Compound 1 is the anhydrous form of the known crystal 2-amino-5-iodopyridinium bromide monohydrate and crystallizes in layers inclined ∼40° to the ab face. Hydrogen bonding between the amino and pyridinium ions to the bromide ion acceptor stabilizes the layers. Compound 2 is a salt of 2-amino-5-iodopyridium and a trihalidocobaltate(II) ion with one coordinated 2-amino-5-iodopyridine ligand. The halide ions are mixed Cl/Br with differing occupancies.
Keywords: crystal structure, 2-amino-5-iodopyridine, Co(II)
Abstract
Reaction of 2-amino-5-iodopyridine (5IAP) with concentrated HBr at room temperature yielded 2-amino-5-iodopyridinium bromide, C5H6IN2+·Br− or (5IAPH)Br. The complex formed pale-yellow crystals, which exhibit significant hydrogen bonding between the amino and pyridinium N—H donors and bromide ion acceptors. Halogen bonding is also observed. Similarly, reaction of 5IAP with cobalt(II) chloride in mixed HCl/HBr in 1-propanol yielded 2-amino-5-iodopyridinium (2-amino-5-iodopyridine-κN1)bromido/chlorido(0.51/2.48)cobalt(II), (C5H6IN2)[CoBr0.51Cl2.48(C5H5IN2)] or (5-IAPH)[(5IAP)CoCl2.48Br0.51], as blue block-shaped crystals. Two of the three halide positions exhibit mixed occupancy [Cl/Br = 0.797 (5):0.203 (5) and 0.689 (6):0.311 (6)], while the third position is occupied solely by a chloride ion. Extensive hydrogen and halogen bonding is observed.
1. Chemical context
The effects of randomness have been of particular interest in physics and chemistry. In particular, they have been considered regarding quantum information (Khrennikov, 2016 ▸), band theory (Coey et al., 2005 ▸) and perturbation of the crystal lattice (Mackenzie, 1964 ▸; Anderson, 1958 ▸). With respect to magnetism, studies have looked at the relationship between randomness and spin glasses (Toulouse, 1986 ▸), amorphous magnets (Coey, 1978 ▸) and valence-bond solids (Kimchi et al., 2018 ▸).
Superexchange in magnetic systems can be studied through the production of families of closely related compounds where small changes in the structure can be correlated with their effects on the magnetic properties of the materials. We have looked at the production of such complexes, especially those based upon salts of subsituted 2-aminopyridine for some time (Araujo-Martinez et al., 2023 ▸; Coffey et al., 2000 ▸; Landee et al., 2001 ▸; Woodward et al., 2002 ▸). One such compound, 2-amino-5-iodopyridine, has been involved in the production of a magnetic ladder (Landee et al., 2001 ▸) and a family of CuII halides complexes (Huynh et al., 2023 ▸).
One difficulty in the studies of randomness in such materials is the introduction of randomness into an otherwise ordered system. Crystallization is intrinsically a self-purifying process and attempts to introduce randomness through introduction of dopants into a system may be frustrated by exclusion of the ‘impurity’ during crystallization (Fujiwara et al. 1995 ▸). We have recently discovered a system, based upon 2-amino-5-iodopyridine (5IAP), where randomness can be introduced to the system via introduction of a mixture of halide ions; (5IAPH)2[CoCl4–xBrx]·H2O (Mukda et al., 2024 ▸) where 5IAPH is 2-amino-5-iodopyridinium. In the course of those investigations, we isolated the related compound (5IAPH)[(5IAP)CoCl3–xBrx] and here report its structure and the structure of the related salt (5IAPH)Br.
2. Structural commentary
(5IAPH)Br (1) crystallized in the triclinic space group P
and comprises one 5IAPH cation and one bromide anion in the asymmetric unit (Fig. 1 ▸). The 5IAPH ring is planar (mean deviation of constituent atoms = 0.012 Å) with the amino substituent lying 0.070 (1) Å out of that plane. The iodine atom is displaced significantly further out of the plane, 0.199 (1) Å, toward the same face. The amino substituent deviates only slightly from sp2-hybridization [sum of ∠s = 360 (2)°]. The plane of the NH2 group is nearly co-planar with the 5IAPH ring [6.8 (15)°] as expected due to conjugation.
Figure 1.
The asymmetric unit of 1 shown as 50% probability ellipsoids (hydrogen atoms are shown as spheres of arbitrary size). Only those hydrogen atoms whose positions were refined are labeled.
(5IAPH)[(5IAP)CoCl3–xBrx] (2) crystallized in the monoclinic space group P21/n. The asymmetric unit is shown in Fig. 2 ▸ and comprises one 5IAPH cation and one [(5IAP)CoCl3–xBrx] anion. The 5IAPH cation is nearly identical to that observed in 1, with a high degree of planarity in the ring (±0.007 Å), the sum of the angles about the amino nitrogen atom being 359 (2)° and the amino group being nearly co-planar with the 5IAPH ring [deviation = 8.9 (16)°]. As with 1, the amino nitrogen atom [0.013 (5) Å] and iodine atom [0.086 (1) Å] are displaced slightly from the plane of the ring, again both toward the same face. The anionic unit comprises one CoII ion with a 5IAP ring coordinated through the pyridine nitrogen atom and three coordinated halide ions. The halide ions are mixed Cl/Br with refined occupancies of Cl1/Br1 [0.797 (5)/0.203 (5)] and Cl3/Br3 [0.689 (6)/0.311 (6)]. Attempts to refine the position of Cl2 as mixed Cl/Br resulted in an occupancy of Cl2 of 1.0 within error; no bromide ion was included in that position in the final refinement. The Co—X bond lengths are all similar (∼2.3 Å) regardless of halide ion (Table 1 ▸). The CoII ion is only slightly distorted from tetrahedral with bond angles ranging from 105.1 (3) to 116.9 (3)°. The 5IAP ring is comparable to the 5IAPH ring in terms of planarity (mean deviation = 0.006 Å) and displacement of N12 and I15 [0.09 (1) Å and 0.077 (1) Å, respectively]. The amino group is again planar, but inclined 17 (2)° relative to the 5IAP plane, likely to accommodate the intramolecular N12—H12A⋯Cl2 hydrogen bond [D⋯A = 3.282 (6) Å; Table 3].
Figure 2.
The asymmetric unit of 2 shown as 50% probability ellipsoids (hydrogen atoms are shown as spheres of arbitrary size). Only those hydrogen atoms whose positions were refined are labeled.
Table 1. Selected geometric parameters (Å, °) for 2.
| Co1—N11 | 2.034 (4) | Co1—Br1 | 2.328 (11) |
| Co1—Cl2 | 2.2648 (15) | Co1—Cl1 | 2.329 (6) |
| Co1—Cl3 | 2.306 (11) | Co1—Br3 | 2.342 (8) |
| N11—Co1—Cl2 | 111.63 (13) | N11—Co1—Cl1 | 105.87 (18) |
| N11—Co1—Cl3 | 105.1 (3) | Cl2—Co1—Cl1 | 109.17 (16) |
| Cl2—Co1—Cl3 | 108.0 (2) | Cl3—Co1—Cl1 | 116.9 (3) |
3. Supramolecular features
Compound 1. Extensive hydrogen (Table 2 ▸) and halogen bonding with the bromide ion as acceptor are present in the structure (Fig. 3 ▸). The hydrogen bonds are typical with D⋯A distances ranging from 3.2136 (12) to 3.4924 (13) Å and D—H⋯A angles of 150.8 (18) to 165.5 (18)°. Each bromide ion serves as an acceptor of three hydrogen bonds from the pyridinium N—H and both protons on the amino group. The latter generates inversion-related pairs of 5IAPH ions bridged by the bromide ions (Fig. 3 ▸). A Type II halogen bond is also present with parameters dI15C⋯Br1 = 3.88 (1) Å and ∠C15—I15C⋯Br1 = 154.6 (4)°. Further halogen bonding is observed in the packing structure (Fig. 4 ▸). Sheets of 5IAPH and bromide ions are linked parallel to the a axis by Type I halogen bonds between inversion-related iodine atoms; dI15⋯I15A = 3.81 (1) Å and ∠C15—I15⋯I15A = 130.6 (3)° [symmetry code: (A) 1 − x, 1 − y, 1 − z].
Table 2. Hydrogen-bond geometry (Å, °) for 1.
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N11—H11⋯Br1 | 0.80 (2) | 2.49 (2) | 3.2136 (12) | 150.8 (18) |
| N12—H12A⋯Br1i | 0.86 (2) | 2.55 (2) | 3.3556 (12) | 155.5 (17) |
| N12—H12B⋯Br1ii | 0.85 (2) | 2.67 (2) | 3.4924 (13) | 165.5 (18) |
Symmetry codes: (i)
; (ii)
.
Figure 3.
Halogen and hydrogen bonding in 1 (atoms are shown as spheres of arbitrary size). Dashed lines represent hydrogen and halogen bonds. Only those atoms involved in halogen or hydrogen bonding are labeled. Symmetry codes: Br1A = −x, 1 − y, −z; Br1B = x, y + 1 z; N12B = −x, 2 − y, −z; I15C = 1 − x, y, z − 1.
Figure 4.
The structure of 1 viewed parallel to the b axis (atoms are shown as spheres of arbitrary size). Dashed lines represent hydrogen and halogen bonds.
Compound 2. As with 1, 2 exhibits multiple hydrogen (Table 3 ▸) and halogen bonds (Fig. 5 ▸). The hydrogen bonds are typical with dD⋯A = 3.282 (6)–3.341 (10) Å and ∠D—H⋯A = 151 (5)–176 (5)°. Type II halogen bonds are also observed between both the 5IAP ligand [dI15⋯Cl1 = 3.464 (3) Å, ∠C15—I15⋯Cl1 = 171.8 (3)°] and the 5IAPH cation [dI25⋯Cl1 = 3.511 (3) Å, ∠C15—I15⋯Cl1 = 175.5 (4)°. Unlike 1, no I⋯I halogen bonds are observed. Similar to 1, the structure forms layers of hydrogen and halogen bridged ions parallel to the ac face diagonal (Fig. 6 ▸). Unlike 1, there are no direct linkages between those layers.
Table 3. Hydrogen-bond geometry (Å, °) for 2.
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N12—H12A⋯Cl2 | 0.85 (6) | 2.47 (7) | 3.282 (6) | 160 (5) |
| N12—H12B⋯Br1i | 0.86 (7) | 2.44 (7) | 3.291 (12) | 170 (6) |
| N22—H22A⋯Br1ii | 0.87 (7) | 2.55 (7) | 3.338 (12) | 151 (5) |
| N22—H22B⋯Br3iii | 0.97 (6) | 2.37 (7) | 3.341 (10) | 176 (5) |
Symmetry codes: (i)
; (ii)
; (iii)
.
Figure 5.
Halogen and hydrogen bonding in 2 (atoms are shown as spheres of arbitrary size). Dashed lines represent hydrogen and halogen bonds. Only those atoms involved in halogen or hydrogen bonding are labeled. Symmetry codes: N12A =
− x, y +
, −z − 0.5; N21E/N22E = 1 − x, 2 − y, −1 − z; N22C = x −
,
− y, z + 0.5; I15B = −x, 2 − y, −z.
Figure 6.
The structure of 2 viewed parallel to the b axis (atoms are shown as spheres of arbitrary size). Dashed lines represent hydrogen and halogen bonds.
4. Database survey
The structures of a few salts of 5-IAPH have been reported. Copper(II) complexes include (5IAPH)[CuCl3(H2O)2]Cl (Abdalrahman et al., 2013 ▸), two polymorphs of (5IAPH)2[CuCl4] (Giantsidis et al., 2002 ▸) and (5IAPH)2[CuBr4]H2O (Landee et al., 2001 ▸). Several Hg and Zn salts of 5IAPH have also been reported (Khavasi et al., 2020 ▸), along with an MnII salt (Carnevale et al., 2021 ▸). Copper complexes of 5IAP itself are also known including [(5IAP)2CuX2], X = Cl, Br, [(5IAP)2CuBr2]2, [(5IAP)3CuCl2], (Huynh et al., 2023 ▸) and [(5IAP)2CuBr(OMe)]2 (Araujo-Martinez et al., 2023 ▸).
Compound 1 may be most conveniently compared to its corresponding hydrate and chloride analogue (Polson et al., 2013 ▸). The C—N bond lengths in 1 are slightly shorter than observed in the hydrated salt (∼0.01–0.12 Å) and chloride analogue. Bond angles in 1 vary ±2° compared to the hydrated bromide salt, but not in any regular fashion, while they are comparable to those observed in the chloride complex within error.
With respect to compound 2, although there no related compounds of 5-IAP, there are a number of reported structures including the [LMX3]− ion where L is a pyridine-based ligand. Several of these involve PtII (Adams et al., 2005 ▸; Bel’skii et al., 1990 ▸; Rochon & Melanson, 1980 ▸; Melanson & Rochon, 1976 ▸) or CoII (Bogdanovic et al., 2001 ▸; Crane et al., 2004 ▸). The closest comparisons appear to be compounds of CuII (Healy et al., 1985 ▸; Savariault et al., 1988 ▸) or CoII (Hahn et al., 1997 ▸) with the formulae (LH)[LMX3] (L = phenazine or quinoline for Cu, pyridine for Co). Similar hydrogen bonding is observed in all three compounds, but the absence of the iodine atom on the L group eliminates the halogen bonding observed in both 1 and 2. Only in the quinolinium trichloridocuprate compound (Savariault et al., 1988 ▸) are all of the aromatic rings approximately parallel, but even so the overall structure is that of dimers, rather than the extended sheet structure seen in 1 and 2. With respect to the geometry at the metal ion, only the cobalt complex is similar with its slightly distorted tetrahedral geometry (as compared to the two strongly Jahn–Teller-distorted Cu complexes) and slightly shorter Co—Cl bond lengths (average = 2.24 Å).
5. Synthesis and crystallization
Compound 1: 2-Amino-5-iodopyridine (0.842g, 3.83 mmol) was dissolved in 10 mL of 9 M HBr and left to evaporate. After about one month, crystals of 1 were isolated by filtration (0.623g, 56%).
Compound 2: HCl (0.0415 g, 12 M) and HBr (0.242 g. 9 M) were added to 2-amino-5-iodopyridine (0.439 g) creating a yellow solid. The solid was dissolved in 15 ml of 1-propanol and then cobalt(II) chloride hexahydrate (0.245 g) was added creating a dark-blue solution. After ten days, blue crystals were recovered by filtration. The crystals were predominantly lighter blue plates of (5IAPH)2[CoCl4–xBrx]·H2O (Mukda et al., 2024 ▸), with a few dark-blue rhombic prisms mixed in. The dark-blue prisms were separated by hand and identified as compound 2 by X-ray diffraction.
6. Refinement
Crystal data, data collection and structure refinement details are summarized in Table 4 ▸. All non-hydrogen atoms were refined anisotropically. Hydrogen atoms bonded to carbon atoms were placed geometrically and refined with a riding model and Uiso(H) = 1.2Ueq(C). Hydrogen atoms bonded to nitrogen atoms were located in a Fourier map and their positions refined with Uiso(H) = 1.2Ueq(N). Occupancies of the mixed halogen sites (X1 and X3) in 2 were allowed to refine freely. Mixed occupancy at the X2 site in 2 was initially assumed, but the bromide occupancy refined to zero within experimental error and the potential bromide ion was removed in the final refinement. Pseudo-isotropic restraints (ISOR) were applied to the lower occupancy ion, Br1.
Table 4. Experimental details.
| 1 | 2 | |
|---|---|---|
| Crystal data | ||
| Chemical formula | C5H6IN2+·Br− | (C5H6IN2)[CoBr0.51Cl2.48(C5H5IN2)] |
| M r | 300.93 | 629.20 |
| Crystal system, space group | Triclinic, P
|
Monoclinic, P21/n |
| Temperature (K) | 100 | 100 |
| a, b, c (Å) | 5.2152 (2), 7.8039 (3), 10.1294 (4) | 9.6998 (7), 13.5527 (8), 13.8518 (11) |
| α, β, γ (°) | 93.3762 (12), 104.1108 (11), 96.4297 (12) | 90, 107.336 (3), 90 |
| V (Å3) | 395.71 (3) | 1738.2 (2) |
| Z | 2 | 4 |
| Radiation type | Mo Kα | Mo Kα |
| μ (mm−1) | 9.01 | 6.10 |
| Crystal size (mm) | 0.24 × 0.21 × 0.08 | 0.11 × 0.07 × 0.06 |
| Data collection | ||
| Diffractometer | Bruker D8 Venture dual wavelength Mo/Cu | Bruker D8 Venture dual wavelength Mo/Cu |
| Absorption correction | Multi-scan (SADABS; Krause et al., 2015 ▸) | Multi-scan (SADABS; Krause et al., 2015 ▸) |
| Tmin, Tmax | 0.605, 0.746 | 0.413, 0.492 |
| No. of measured, independent and observed [I > 2σ(I)] reflections | 13418, 2412, 2346 | 15915, 4318, 3139 |
| R int | 0.025 | 0.048 |
| (sin θ/λ)max (Å−1) | 0.714 | 0.668 |
| Refinement | ||
| R[F2 > 2σ(F2)], wR(F2), S | 0.012, 0.029, 1.11 | 0.040, 0.090, 1.09 |
| No. of reflections | 2412 | 4318 |
| No. of parameters | 91 | 216 |
| No. of restraints | 0 | 6 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.48, −0.50 | 1.22, −0.78 |
Supplementary Material
Crystal structure: contains datablock(s) 1, 2, publication_text. DOI: 10.1107/S2056989024010259/zn2039sup1.cif
Structure factors: contains datablock(s) 1. DOI: 10.1107/S2056989024010259/zn20391sup2.hkl
Structure factors: contains datablock(s) 2. DOI: 10.1107/S2056989024010259/zn20392sup3.hkl
Additional supporting information: crystallographic information; 3D view; checkCIF report
Acknowledgments
Funding for Open Access publication by the Gustaf H. Carlson Fund and support for BAM from the Bernard and Vera Kopelman Fund are gratefully acknowledged.
supplementary crystallographic information
2-Amino-5-iodopyridinium bromide (1). Crystal data
| C5H6IN2+·Br− | Z = 2 |
| Mr = 300.93 | F(000) = 276 |
| Triclinic, P1 | Dx = 2.526 Mg m−3 |
| a = 5.2152 (2) Å | Mo Kα radiation, λ = 0.71073 Å |
| b = 7.8039 (3) Å | Cell parameters from 9950 reflections |
| c = 10.1294 (4) Å | θ = 2.6–30.5° |
| α = 93.3762 (12)° | µ = 9.01 mm−1 |
| β = 104.1108 (11)° | T = 100 K |
| γ = 96.4297 (12)° | Block, yellow |
| V = 395.71 (3) Å3 | 0.24 × 0.21 × 0.08 mm |
2-Amino-5-iodopyridinium bromide (1). Data collection
| Bruker D8 VENTURE dual wavelength Mo/Cu diffractometer | 2412 independent reflections |
| Radiation source: microfocus sealed X-ray tube, Incoatec Iµs 3.0 | 2346 reflections with I > 2σ(I) |
| HELIOS double bounce multilayer mirror monochromator | Rint = 0.025 |
| φ and ω scans | θmax = 30.5°, θmin = 2.1° |
| Absorption correction: multi-scan (SADABS; Krause et al., 2015) | h = −7→7 |
| Tmin = 0.605, Tmax = 0.746 | k = −11→11 |
| 13418 measured reflections | l = −14→13 |
2-Amino-5-iodopyridinium bromide (1). Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.012 | Hydrogen site location: mixed |
| wR(F2) = 0.029 | H atoms treated by a mixture of independent and constrained refinement |
| S = 1.11 | w = 1/[σ2(Fo2) + 0.2575P] where P = (Fo2 + 2Fc2)/3 |
| 2412 reflections | (Δ/σ)max = 0.002 |
| 91 parameters | Δρmax = 0.48 e Å−3 |
| 0 restraints | Δρmin = −0.50 e Å−3 |
2-Amino-5-iodopyridinium bromide (1). Special details
| Experimental. Data collections for compounds 1 and 2 were carried out with a Bruker D8 Venture Photon III diffractometer employing Mo-Kα radiation (λ = 0.71073Å). The data were collected using Bruker Instrument Service v8.5.0.27 & APEX4 v2022.10-1 and reduced using Bruker SAINT v8.40b (Bruker, 2022). Absorption corrections were performed using SADABS (Krause, 2015). The structure was solved using SHELXS-2014 (Sheldrick, 2008) and refined using SHELXL-2019 (Sheldrick, 2015). |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
2-Amino-5-iodopyridinium bromide (1). Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| N11 | 0.5947 (2) | 0.68193 (15) | 0.18178 (12) | 0.0141 (2) | |
| H11 | 0.482 (4) | 0.603 (3) | 0.145 (2) | 0.017* | |
| C12 | 0.5464 (3) | 0.84605 (17) | 0.16387 (13) | 0.0128 (2) | |
| N12 | 0.3196 (2) | 0.87844 (17) | 0.08228 (13) | 0.0164 (2) | |
| H12A | 0.197 (4) | 0.801 (3) | 0.034 (2) | 0.020* | |
| H12B | 0.292 (4) | 0.983 (3) | 0.081 (2) | 0.020* | |
| C13 | 0.7459 (3) | 0.98060 (17) | 0.23485 (14) | 0.0141 (2) | |
| H13 | 0.722951 | 1.097926 | 0.221414 | 0.017* | |
| C14 | 0.9711 (3) | 0.94205 (17) | 0.32251 (14) | 0.0146 (2) | |
| H14 | 1.103592 | 1.032609 | 0.371018 | 0.017* | |
| I15 | 1.33221 (2) | 0.70519 (2) | 0.48691 (2) | 0.01678 (3) | |
| C15 | 1.0075 (3) | 0.76766 (17) | 0.34127 (13) | 0.0140 (2) | |
| C16 | 0.8176 (3) | 0.64035 (18) | 0.26754 (14) | 0.0149 (2) | |
| H16 | 0.841544 | 0.522265 | 0.276282 | 0.018* | |
| Br1 | 0.23627 (3) | 0.31109 (2) | 0.14445 (2) | 0.01608 (4) |
2-Amino-5-iodopyridinium bromide (1). Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| N11 | 0.0168 (5) | 0.0103 (5) | 0.0141 (5) | −0.0016 (4) | 0.0035 (4) | −0.0002 (4) |
| C12 | 0.0149 (6) | 0.0121 (5) | 0.0118 (5) | 0.0003 (4) | 0.0051 (4) | 0.0005 (4) |
| N12 | 0.0150 (5) | 0.0149 (5) | 0.0171 (5) | 0.0000 (4) | 0.0008 (4) | 0.0008 (4) |
| C13 | 0.0167 (6) | 0.0106 (5) | 0.0145 (6) | 0.0010 (4) | 0.0029 (5) | 0.0020 (4) |
| C14 | 0.0149 (6) | 0.0127 (6) | 0.0147 (6) | −0.0005 (4) | 0.0023 (5) | 0.0007 (5) |
| I15 | 0.01575 (5) | 0.01769 (5) | 0.01789 (5) | 0.00603 (3) | 0.00364 (3) | 0.00494 (3) |
| C15 | 0.0154 (6) | 0.0144 (6) | 0.0136 (6) | 0.0035 (5) | 0.0053 (5) | 0.0033 (5) |
| C16 | 0.0193 (6) | 0.0125 (6) | 0.0145 (6) | 0.0029 (5) | 0.0063 (5) | 0.0029 (5) |
| Br1 | 0.01538 (6) | 0.01065 (6) | 0.01964 (7) | −0.00109 (4) | 0.00095 (5) | 0.00055 (5) |
2-Amino-5-iodopyridinium bromide (1). Geometric parameters (Å, º)
| N11—C12 | 1.3469 (17) | C13—C14 | 1.3638 (19) |
| N11—C16 | 1.3553 (18) | C13—H13 | 0.9500 |
| N11—H11 | 0.80 (2) | C14—C15 | 1.4125 (18) |
| C12—N12 | 1.3271 (18) | C14—H14 | 0.9500 |
| C12—C13 | 1.4155 (18) | I15—C15 | 2.0815 (14) |
| N12—H12A | 0.86 (2) | C15—C16 | 1.3628 (19) |
| N12—H12B | 0.85 (2) | C16—H16 | 0.9500 |
| C12—N11—C16 | 123.45 (12) | C12—C13—H13 | 120.0 |
| C12—N11—H11 | 119.3 (14) | C13—C14—C15 | 120.09 (12) |
| C16—N11—H11 | 117.1 (14) | C13—C14—H14 | 120.0 |
| N12—C12—N11 | 120.62 (13) | C15—C14—H14 | 120.0 |
| N12—C12—C13 | 121.90 (12) | C16—C15—C14 | 118.68 (13) |
| N11—C12—C13 | 117.49 (12) | C16—C15—I15 | 120.29 (10) |
| C12—N12—H12A | 124.8 (13) | C14—C15—I15 | 120.93 (10) |
| C12—N12—H12B | 116.8 (14) | N11—C16—C15 | 120.10 (12) |
| H12A—N12—H12B | 118.3 (19) | N11—C16—H16 | 119.9 |
| C14—C13—C12 | 120.10 (12) | C15—C16—H16 | 119.9 |
| C14—C13—H13 | 120.0 | ||
| C16—N11—C12—N12 | −177.42 (13) | C13—C14—C15—C16 | 1.8 (2) |
| C16—N11—C12—C13 | 2.67 (19) | C13—C14—C15—I15 | −174.50 (10) |
| N12—C12—C13—C14 | 177.04 (13) | C12—N11—C16—C15 | 0.0 (2) |
| N11—C12—C13—C14 | −3.05 (19) | C14—C15—C16—N11 | −2.25 (19) |
| C12—C13—C14—C15 | 0.9 (2) | I15—C15—C16—N11 | 174.05 (10) |
2-Amino-5-iodopyridinium bromide (1). Hydrogen-bond geometry (Å, º)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N11—H11···Br1 | 0.80 (2) | 2.49 (2) | 3.2136 (12) | 150.8 (18) |
| N12—H12A···Br1i | 0.86 (2) | 2.55 (2) | 3.3556 (12) | 155.5 (17) |
| N12—H12B···Br1ii | 0.85 (2) | 2.67 (2) | 3.4924 (13) | 165.5 (18) |
Symmetry codes: (i) −x, −y+1, −z; (ii) x, y+1, z.
2-Amino-5-iodopyridinium (2-amino-5-iodopyridine-κN1)bromido/chlorido(0.51/2.48)cobalt(II) (2) . Crystal data
| (C5H6IN2)[CoBr0.51Cl2.48(C5H5IN2)] | F(000) = 1169 |
| Mr = 629.20 | Dx = 2.404 Mg m−3 |
| Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
| a = 9.6998 (7) Å | Cell parameters from 5517 reflections |
| b = 13.5527 (8) Å | θ = 2.7–28.3° |
| c = 13.8518 (11) Å | µ = 6.10 mm−1 |
| β = 107.336 (3)° | T = 100 K |
| V = 1738.2 (2) Å3 | Block, blue |
| Z = 4 | 0.11 × 0.07 × 0.06 mm |
2-Amino-5-iodopyridinium (2-amino-5-iodopyridine-κN1)bromido/chlorido(0.51/2.48)cobalt(II) (2) . Data collection
| Bruker D8 VENTURE dual wavelength Mo/Cu diffractometer | 4318 independent reflections |
| Radiation source: microfocus sealed X-ray tube, Incoatec Iµs 3.0 | 3139 reflections with I > 2σ(I) |
| HELIOS double bounce multilayer mirror monochromator | Rint = 0.048 |
| φ and ω scans | θmax = 28.3°, θmin = 2.2° |
| Absorption correction: multi-scan (SADABS; Krause et al., 2015) | h = −12→10 |
| Tmin = 0.413, Tmax = 0.492 | k = −18→16 |
| 15915 measured reflections | l = −14→18 |
2-Amino-5-iodopyridinium (2-amino-5-iodopyridine-κN1)bromido/chlorido(0.51/2.48)cobalt(II) (2) . Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.040 | Hydrogen site location: mixed |
| wR(F2) = 0.090 | H atoms treated by a mixture of independent and constrained refinement |
| S = 1.09 | w = 1/[σ2(Fo2) + (0.0334P)2 + 3.1822P] where P = (Fo2 + 2Fc2)/3 |
| 4318 reflections | (Δ/σ)max = 0.001 |
| 216 parameters | Δρmax = 1.22 e Å−3 |
| 6 restraints | Δρmin = −0.77 e Å−3 |
2-Amino-5-iodopyridinium (2-amino-5-iodopyridine-κN1)bromido/chlorido(0.51/2.48)cobalt(II) (2) . Special details
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
2-Amino-5-iodopyridinium (2-amino-5-iodopyridine-κN1)bromido/chlorido(0.51/2.48)cobalt(II) (2) . Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | Occ. (<1) | |
| Co1 | 0.13812 (7) | 0.97174 (5) | −0.26955 (6) | 0.01941 (17) | |
| Br1 | 0.3650 (11) | 1.0006 (8) | −0.1556 (9) | 0.034 (4) | 0.203 (5) |
| Cl1 | 0.3649 (7) | 0.9995 (3) | −0.1548 (5) | 0.0174 (19) | 0.797 (5) |
| Cl2 | 0.16479 (13) | 0.92952 (9) | −0.42118 (10) | 0.0202 (3) | |
| Br3 | −0.0247 (7) | 1.1037 (7) | −0.2947 (4) | 0.0155 (17) | 0.311 (6) |
| Cl3 | −0.0261 (11) | 1.0994 (9) | −0.2955 (7) | 0.039 (4) | 0.689 (6) |
| N11 | 0.0486 (4) | 0.8604 (3) | −0.2101 (3) | 0.0177 (9) | |
| N12 | 0.1448 (5) | 0.7359 (4) | −0.2837 (4) | 0.0255 (11) | |
| H12A | 0.170 (6) | 0.779 (5) | −0.319 (5) | 0.031* | |
| H12B | 0.146 (7) | 0.677 (5) | −0.305 (5) | 0.031* | |
| C12 | 0.0668 (5) | 0.7640 (4) | −0.2239 (4) | 0.0205 (11) | |
| C13 | 0.0025 (6) | 0.6924 (4) | −0.1763 (4) | 0.0250 (13) | |
| H13 | 0.012753 | 0.624131 | −0.188153 | 0.030* | |
| C14 | −0.0742 (5) | 0.7219 (4) | −0.1134 (4) | 0.0245 (12) | |
| H14 | −0.116299 | 0.674373 | −0.080308 | 0.029* | |
| I15 | −0.19969 (4) | 0.87761 (3) | −0.00022 (3) | 0.02480 (11) | |
| C15 | −0.0903 (5) | 0.8235 (4) | −0.0978 (4) | 0.0221 (12) | |
| C16 | −0.0286 (5) | 0.8888 (4) | −0.1475 (4) | 0.0218 (12) | |
| H16 | −0.040037 | 0.957340 | −0.137836 | 0.026* | |
| N21 | 0.8337 (5) | 0.8524 (3) | −0.4898 (4) | 0.0220 (10) | |
| H21 | 0.882 (6) | 0.896 (4) | −0.522 (4) | 0.026* | |
| C22 | 0.8517 (5) | 0.7548 (4) | −0.5034 (4) | 0.0206 (11) | |
| N22 | 0.9307 (5) | 0.7271 (4) | −0.5612 (4) | 0.0280 (11) | |
| H22A | 0.946 (7) | 0.665 (5) | −0.571 (5) | 0.034* | |
| H22B | 0.962 (6) | 0.775 (5) | −0.602 (5) | 0.034* | |
| C23 | 0.7858 (5) | 0.6896 (4) | −0.4513 (4) | 0.0223 (12) | |
| H23 | 0.796975 | 0.620461 | −0.457159 | 0.027* | |
| C24 | 0.7061 (5) | 0.7247 (4) | −0.3925 (4) | 0.0215 (12) | |
| H24 | 0.662676 | 0.680358 | −0.357108 | 0.026* | |
| C25 | 0.6888 (5) | 0.8281 (4) | −0.3847 (4) | 0.0220 (12) | |
| I25 | 0.56035 (4) | 0.88657 (3) | −0.30094 (3) | 0.02550 (11) | |
| C26 | 0.7535 (5) | 0.8891 (4) | −0.4331 (4) | 0.0202 (11) | |
| H26 | 0.743268 | 0.958429 | −0.427857 | 0.024* |
2-Amino-5-iodopyridinium (2-amino-5-iodopyridine-κN1)bromido/chlorido(0.51/2.48)cobalt(II) (2) . Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| Co1 | 0.0173 (3) | 0.0176 (4) | 0.0231 (4) | −0.0007 (3) | 0.0057 (3) | 0.0006 (3) |
| Br1 | 0.011 (5) | 0.054 (6) | 0.042 (8) | 0.000 (4) | 0.014 (4) | 0.006 (5) |
| Cl1 | 0.026 (4) | 0.0045 (18) | 0.021 (3) | 0.0005 (17) | 0.006 (2) | −0.0007 (17) |
| Cl2 | 0.0173 (5) | 0.0213 (7) | 0.0214 (7) | 0.0003 (5) | 0.0050 (5) | 0.0009 (5) |
| Br3 | 0.017 (3) | 0.020 (3) | 0.009 (2) | 0.004 (2) | 0.0037 (19) | 0.002 (2) |
| Cl3 | 0.047 (6) | 0.019 (4) | 0.053 (6) | 0.000 (3) | 0.018 (4) | −0.001 (3) |
| N11 | 0.0156 (19) | 0.015 (2) | 0.021 (2) | −0.0005 (17) | 0.0038 (17) | 0.0003 (18) |
| N12 | 0.035 (3) | 0.019 (3) | 0.023 (3) | 0.002 (2) | 0.010 (2) | −0.002 (2) |
| C12 | 0.016 (2) | 0.018 (3) | 0.024 (3) | 0.002 (2) | 0.002 (2) | −0.005 (2) |
| C13 | 0.023 (3) | 0.021 (3) | 0.025 (3) | −0.001 (2) | −0.001 (2) | −0.003 (2) |
| C14 | 0.018 (2) | 0.026 (3) | 0.024 (3) | −0.008 (2) | −0.001 (2) | 0.005 (2) |
| I15 | 0.02164 (18) | 0.0306 (2) | 0.0235 (2) | −0.00515 (15) | 0.00868 (14) | −0.00071 (16) |
| C15 | 0.015 (2) | 0.024 (3) | 0.025 (3) | −0.003 (2) | 0.002 (2) | −0.003 (2) |
| C16 | 0.019 (2) | 0.020 (3) | 0.024 (3) | −0.001 (2) | 0.002 (2) | −0.002 (2) |
| N21 | 0.021 (2) | 0.020 (2) | 0.025 (3) | −0.0046 (19) | 0.0050 (19) | −0.0008 (19) |
| C22 | 0.015 (2) | 0.021 (3) | 0.024 (3) | 0.000 (2) | 0.002 (2) | −0.003 (2) |
| N22 | 0.025 (2) | 0.023 (3) | 0.038 (3) | 0.000 (2) | 0.014 (2) | −0.003 (2) |
| C23 | 0.020 (2) | 0.017 (3) | 0.028 (3) | −0.003 (2) | 0.003 (2) | 0.001 (2) |
| C24 | 0.016 (2) | 0.021 (3) | 0.025 (3) | −0.004 (2) | 0.003 (2) | 0.003 (2) |
| C25 | 0.013 (2) | 0.030 (3) | 0.018 (3) | −0.001 (2) | −0.002 (2) | −0.004 (2) |
| I25 | 0.01950 (17) | 0.0274 (2) | 0.0308 (2) | 0.00454 (15) | 0.00938 (15) | 0.00033 (16) |
| C26 | 0.018 (2) | 0.017 (3) | 0.025 (3) | 0.003 (2) | 0.005 (2) | −0.004 (2) |
2-Amino-5-iodopyridinium (2-amino-5-iodopyridine-κN1)bromido/chlorido(0.51/2.48)cobalt(II) (2) . Geometric parameters (Å, º)
| Co1—N11 | 2.034 (4) | C15—C16 | 1.364 (8) |
| Co1—Cl2 | 2.2648 (15) | C16—H16 | 0.9500 |
| Co1—Cl3 | 2.306 (11) | N21—C26 | 1.354 (7) |
| Co1—Br1 | 2.328 (11) | N21—C22 | 1.354 (7) |
| Co1—Cl1 | 2.329 (6) | N21—H21 | 0.95 (6) |
| Co1—Br3 | 2.342 (8) | C22—N22 | 1.318 (7) |
| N11—C12 | 1.339 (6) | C22—C23 | 1.409 (8) |
| N11—C16 | 1.359 (7) | N22—H22A | 0.87 (7) |
| N12—C12 | 1.333 (7) | N22—H22B | 0.97 (6) |
| N12—H12A | 0.85 (6) | C23—C24 | 1.364 (8) |
| N12—H12B | 0.86 (7) | C23—H23 | 0.9500 |
| C12—C13 | 1.418 (8) | C24—C25 | 1.420 (8) |
| C13—C14 | 1.363 (8) | C24—H24 | 0.9500 |
| C13—H13 | 0.9500 | C25—C26 | 1.333 (8) |
| C14—C15 | 1.410 (8) | C25—I25 | 2.095 (6) |
| C14—H14 | 0.9500 | C26—H26 | 0.9500 |
| I15—C15 | 2.084 (6) | ||
| N11—Co1—Cl2 | 111.63 (13) | C16—C15—I15 | 118.9 (4) |
| N11—Co1—Cl3 | 105.1 (3) | C14—C15—I15 | 123.0 (4) |
| Cl2—Co1—Cl3 | 108.0 (2) | N11—C16—C15 | 123.1 (5) |
| N11—Co1—Br1 | 106.4 (3) | N11—C16—H16 | 118.4 |
| Cl2—Co1—Br1 | 109.0 (3) | C15—C16—H16 | 118.4 |
| N11—Co1—Cl1 | 105.87 (18) | C26—N21—C22 | 124.0 (5) |
| Cl2—Co1—Cl1 | 109.17 (16) | C26—N21—H21 | 120 (4) |
| Cl3—Co1—Cl1 | 116.9 (3) | C22—N21—H21 | 116 (4) |
| N11—Co1—Br3 | 106.1 (2) | N22—C22—N21 | 119.1 (5) |
| Cl2—Co1—Br3 | 108.25 (15) | N22—C22—C23 | 124.5 (5) |
| Br1—Co1—Br3 | 115.6 (3) | N21—C22—C23 | 116.4 (5) |
| C12—N11—C16 | 119.2 (5) | C22—N22—H22A | 122 (4) |
| C12—N11—Co1 | 125.2 (4) | C22—N22—H22B | 121 (4) |
| C16—N11—Co1 | 115.5 (3) | H22A—N22—H22B | 117 (6) |
| C12—N12—H12A | 119 (4) | C24—C23—C22 | 120.8 (5) |
| C12—N12—H12B | 124 (4) | C24—C23—H23 | 119.6 |
| H12A—N12—H12B | 114 (6) | C22—C23—H23 | 119.6 |
| N12—C12—N11 | 119.4 (5) | C23—C24—C25 | 119.4 (5) |
| N12—C12—C13 | 120.2 (5) | C23—C24—H24 | 120.3 |
| N11—C12—C13 | 120.4 (5) | C25—C24—H24 | 120.3 |
| C14—C13—C12 | 119.7 (5) | C26—C25—C24 | 119.3 (5) |
| C14—C13—H13 | 120.1 | C26—C25—I25 | 119.4 (4) |
| C12—C13—H13 | 120.1 | C24—C25—I25 | 121.2 (4) |
| C13—C14—C15 | 119.4 (5) | C25—C26—N21 | 120.1 (5) |
| C13—C14—H14 | 120.3 | C25—C26—H26 | 119.9 |
| C15—C14—H14 | 120.3 | N21—C26—H26 | 119.9 |
| C16—C15—C14 | 118.1 (5) | ||
| C16—N11—C12—N12 | −178.7 (5) | I15—C15—C16—N11 | 177.9 (4) |
| Co1—N11—C12—N12 | −2.5 (7) | C26—N21—C22—N22 | 179.2 (5) |
| C16—N11—C12—C13 | 1.9 (7) | C26—N21—C22—C23 | −2.4 (7) |
| Co1—N11—C12—C13 | 178.2 (4) | N22—C22—C23—C24 | 179.7 (5) |
| N12—C12—C13—C14 | 178.4 (5) | N21—C22—C23—C24 | 1.3 (7) |
| N11—C12—C13—C14 | −2.2 (8) | C22—C23—C24—C25 | 0.5 (8) |
| C12—C13—C14—C15 | 1.0 (8) | C23—C24—C25—C26 | −1.5 (8) |
| C13—C14—C15—C16 | 0.4 (8) | C23—C24—C25—I25 | 177.2 (4) |
| C13—C14—C15—I15 | −178.1 (4) | C24—C25—C26—N21 | 0.6 (8) |
| C12—N11—C16—C15 | −0.5 (8) | I25—C25—C26—N21 | −178.2 (4) |
| Co1—N11—C16—C15 | −177.1 (4) | C22—N21—C26—C25 | 1.5 (8) |
| C14—C15—C16—N11 | −0.7 (8) |
2-Amino-5-iodopyridinium (2-amino-5-iodopyridine-κN1)bromido/chlorido(0.51/2.48)cobalt(II) (2) . Hydrogen-bond geometry (Å, º)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N12—H12A···Cl2 | 0.85 (6) | 2.47 (7) | 3.282 (6) | 160 (5) |
| N12—H12B···Br1i | 0.86 (7) | 2.44 (7) | 3.291 (12) | 170 (6) |
| N22—H22A···Br1ii | 0.87 (7) | 2.55 (7) | 3.338 (12) | 151 (5) |
| N22—H22A···I15iii | 0.87 (7) | 3.33 (6) | 3.711 (5) | 110 (5) |
| N22—H22B···Br3iv | 0.97 (6) | 2.37 (7) | 3.341 (10) | 176 (5) |
Symmetry codes: (i) −x+1/2, y−1/2, −z−1/2; (ii) x+1/2, −y+3/2, z−1/2; (iii) x+3/2, −y+3/2, z−1/2; (iv) −x+1, −y+2, −z−1.
Funding Statement
Funding for this research was provided by: Gustaf H. Carlson Fund (grant to Mark M. Turnbull); Bernard and Vera Kopelman Fund (bursary to Benjamin A. Mukda).
References
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) 1, 2, publication_text. DOI: 10.1107/S2056989024010259/zn2039sup1.cif
Structure factors: contains datablock(s) 1. DOI: 10.1107/S2056989024010259/zn20391sup2.hkl
Structure factors: contains datablock(s) 2. DOI: 10.1107/S2056989024010259/zn20392sup3.hkl
Additional supporting information: crystallographic information; 3D view; checkCIF report






