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. 2024 Oct 14;93(3):1090–1103. doi: 10.1002/mrm.30333

Parallel transmit hybrid pulse design for controlled on‐resonance magnetization transfer in R 1 mapping at 7T

David Leitão 1,, Raphael Tomi‐Tricot 2,3, Philippa Bridgen 4,5, Pierluigi Di Cio 4,5, Patrick Liebig 6, Rene Gumbrecht 6, Dieter Ritter 6, Sharon Giles 1,5, Joseph V Hajnal 1,3, Shaihan J Malik 1,3
PMCID: PMC11680742  PMID: 39402761

Abstract

Purpose

This work proposes a “hybrid” RF pulse design method for parallel transmit (pTx) systems to simultaneously control flip angle and root‐mean‐squared B1+ (B1rms). These pulses are generally only designed for flip angle, however, this can lead to uncontrolled B1rms, which then leads to variable magnetization transfer (MT) effects. We demonstrate the hybrid design approach for quantitative imaging where both flip angle and B1rms are important.

Theory and Methods

A dual cost function optimization is performed containing the normalized mean squared errors of the flip angle and B1rms distributions weighted by a parameter λ. Simulations were conducted to study the behavior of both properties when simultaneously optimizing them. In vivo experiments on a 7T MRI system with an 8‐channel pTx head coil were carried out to study the effect of the hybrid design approach on variable flip angle R1(= 1/T1) mapping.

Results

Simulations showed that both flip angle and B1rms can be homogenized simultaneously without detriment to either when compared to an individual optimization. By homogenizing flip angle and B1rms, R1 maps were more uniform (coefficient of variation 6.6% vs. 13.0%) compared to those acquired with pulses that only homogenized flip angle.

Conclusion

The proposed hybrid design homogenizes on‐resonance MT effects while homogenizing the flip angle distribution, with only a small detriment in the latter compared to a pulse that just homogenizes flip angle. This improved R1 mapping by controlling incidental MT effects, yielding more uniform R1 maps.

Keywords: B1+ inhomogeneity, magnetization transfer, parallel transmit, RF pulse design, ultra high field

1. INTRODUCTION

Ultra‐high field (UHF) imaging (≥7T) offers increased SNR, which can be translated to higher resolutions. 1 , 2 However, the higher associated Larmor frequency leads to spatially inhomogeneous RF magnetic (B1+) fields, 3 , 4 which can severely impact image quality. Several solutions have been proposed to address this 5 , 6 , 7 , 8 including parallel transmission 7 , 8 , 9 , 10 (pTx) whereby the RF system is split into multiple independently controlled channels. Optimizing the relative amplitude/phase of every channel to homogenize the created B1+ field, known as RF shimming, 11 , 12 , 13 can require large number of channels for full 3D coverage, 11 therefore, advanced RF pulse designs are usually combined with pTx. Conventional pulse designs 14 , 15 , 16 typically control the nutation of the magnetization for mobile protons (free‐water and fat) that exhibit prolonged transverse magnetization decay times (T2), that is, the flip angle produced by an RF pulse, which is based on dynamics described by the Bloch equation. 17

Biological tissues also contain a pool of “semisolid” magnetization associated with protons in macromolecules 18 and bound water. These protons typically have very short T2 (˜10 μs) making them unobservable to most MRI; their dynamics are also not well‐described by the Bloch equation because they exhibit non‐exponential decays, as captured by the recently proposed generalized Bloch model. 19 For RF pulses whose durations are significantly longer than the semisolid T2 (which is the case for most pulses on human imaging systems), a binary spin‐bath (BSB) formulation 20 , 21 provides a good model. According to the BSB model the semisolid magnetization has no transverse magnetization and its longitudinal magnetization is saturated according to the root‐mean‐squared B1+ (B1rms) created by the RF pulses. Although in practice the semisolid magnetization is not directly observed, it exchanges magnetization with the free‐water pool, an effect known as magnetization transfer 22 , 23 (MT). Hence, RF pulses that produce spatially non‐uniform B1rms can produce spatially non‐uniform contrast, mediated by MT. The recently proposed parallel transmit pulse design for saturation homogeneity (“PUSH”) method 24 addressed this effect by controlling the B1rms distribution produced by the RF pulse. PUSH was applied to design saturation pulses for generation of MT contrast; in this scenario, the direct effect 23 on the free‐water magnetization, that is, the flip angle, was ignored because the pulses were applied off‐resonance.

In general, most MRI experiments apply pulses on‐resonance, whether for excitation, refocusing, or inversion. Although in most cases one just considers the flip angle of such pulses, they also saturate the semisolid magnetization according to B1rms. This effect is typically smaller than that of the flip angle, nevertheless studies have shown that such “incidental” on‐resonance MT effects are a confound for different sequences including quantitative MT, 25 , 26 , 27 , 28 single pool relaxometry R1 (=1/T1) mapping using variable flip angle 28 , 29 , 30 , 31 (VFA) and inversion recovery 32 (IR), or even multiple spin echo 33 (MSE) sequences. In the case of the VFA method, it has been shown 30 that the apparent relaxation rate (R^1) varies with the applied B1rms:

R^1=R1f+kfs1ksfR1s+ksf+πg(Δ)γB1rms2, (1)

where R1f and R1s are the longitudinal exchange rates of the free‐water (f) and semisolid (s) pools, kfs (and ksf) is the exchange rate from pool f to s (and from pool s to f), g is the semisolid absorption line‐shape at RF frequency offset Δ and γ is the gyromagnetic ratio. The dependence of R^1 on B1rms leads to spatially varying R^1 if B1rms is itself spatially inhomogeneous.

In this work, we propose a generalized “hybrid” RF pulse design method that optimizes both flip angle and B1rms distributions simultaneously and demonstrate its utility for designing pulses for VFA R1 mapping at 7T.

2. THEORY

2.1. Hybrid design

Conventionally, pTx pulse designs target a desired rotation, or flip angle α, of the free‐water magnetization:

{b^,g^}argminb,gα(b,g)αdesW2, (2)

where b and g are vectors representing the RF and gradient waveforms respectively, αdes is a vector with the desired flip angle, and W is a diagonal matrix with spatial error weightings. We calculate α using the small tip angle (STA) approximation similarly to the spatial domain method from Grissom et al. 34 Discretizing space in Ns samples and time in Nt samples, the Ns×1 transverse magnetization vector m is given by:

m=q=1NchdiagsqAbq, (3)

where sq is a Ns×1 vector with the transmit sensitivities of the qth channel (transformed into a Ns×Ns diagonal matrix), bq is a Nt×1 vector with the time samples of the RF waveform in the qth channel, and A is the Ns×Nt system matrix whose elements are given by:

Amn=iγm0ΔteiγΔB0rmtnτeirm×ktn, (4)

where i2=1 is the imaginary unit, m0 is the equilibrium magnetization, Δt is the time discretization step, ΔB0rm is the off‐resonance at coordinates rm=xmymzmT, τ is the pulse duration and k is a 3×Nt matrix with the excitation k‐space trajectory. 35 Note that αm/m0 under the STA, therefore, Eq. (2) targets the magnitude of the magnetization and ignores the excitation phase.

The recently proposed PUSH design instead targets a desired saturation of semisolid magnetization by controlling B1rms (referred to as β in the optimization):

{b^}argminbβ(b)βdesW2, (5)

where βdes is the desired B1rms, and β is given by:

βm=1TRn=1NtΔtq=1Nchsqrmbqtn2, (6)

where TR is the repetition time. This work considers simple repeating gradient‐recalled sequences where averaging over TR gives the sequence B1rms, although this could be extended to different sequences and pulse types as necessary.

Here, we explore a “hybrid pulse design” method that simultaneously controls α and β using a dual cost function optimization that also includes operational constraints on hardware and specific absorption rate (SAR) for a model subject:

{b^,g^}argminb,g(1λ)α(b,g)αdesw2αdesw2+λβ(b)βdesw2βdesw2s.t.SARglobal(b)SARglobal,max,SAR10g,v(b)SAR10g,max,1vNVOP,𝒫q(b)𝒫max,1qNch,bqVmax,1qNch,|g|Gampmax,dgdtGslewmax., (7)

where SARglobal,max is the global SAR limit, SAR10g,max is the 10 g local SAR limit, 𝒫max is the maximum average power, Vmax is the maximum RF voltage per channel, Gampmax is the maximum gradient amplitude and Gslewmax is the maximum slew rate. Local SAR is calculated using a virtual observation point (VOP) compressed model 36 with NVOP total observation points. The proposed design consists of one term that is the normalized mean squared error of the flip angle weighted by 1λ and another that is the normalized mean squared error of the B1rms weighted by λ.

Compared to the more conventional pulse design (Eq. [2]) that usually just targets a desired flip angle αdes, the hybrid (HY) design (Eq. [7]) introduces two new parameters: λ and βdes. The balancing parameter λ allows adjustment to a flip angle only (FA) optimization (λ=0) or to a B1rms only (i.e., PUSH) optimization (λ=1). We explore HY optimizations where λ(0,1). In these cases, λ trades‐off between the flip angle and B1rms errors in what is called the Pareto front, and its choice depends on the acceptable error for each one.

2.2. Lower bound βmin

The properties α and β from an RF pulse are related, so when choosing targets αdes and βdes in Eq. (7) for λ(0,1) it is important to ensure that both targets are consistent. Consider an RF pulse applied on‐resonance without any gradients or off‐resonance and with duration τ and waveform B1+(t); its flip angle is:

α=γ0τB1+(t)dt=γB1peakτ01btdtp1=γB1peakτp1, (8)

where B1peak is the peak B1+(t) and bt is the RF waveform normalized to unit duration and amplitude. At the same time the B1rms produced by this pulse is:

β=1TR0τB1+(t)2dt=τTRB1peak|2×01bt2dtp2=τTRB1peakp2, (9)

Combining Eqs. (8) and (9) establishes a relationship between the two:

α=γp1TRτp2β. (10)

Equivalence is only met if bt is real (i.e., pulse is on‐resonance), and there are no off‐resonance and/or applied gradient fields. In the more general case, magnetization can nutate back and forth between the longitudinal axis and transverse plane because of the aforementioned effects such that the final achieved flip angle is less than that given by Eq. (10), resulting in the following inequality:

αγp1TRτp2β. (11)

Therefore, a minimum B1rms is needed to achieve any target αdes:

βmin=p2γp1TRταdes. (12)

For any design problem it will be necessary to choose βdesβmin to ensure that a feasible solution exists.

3. METHODS

3.1. Simulations

To explore the proposed design, excitation pulses were designed offline using the kT‐points 14 method (5 RF rectangular sub‐pulses of 200 μs duration and 100 μs gradient blips) for a variety of scenarios: all combinations from αdes = 15°, βdes0.5βmin,4βmin in steps of 0.1βmin (βmin = 0.415 μT), and λ[0,1] in 51 logarithmically spaced steps (denser in the bounds and sparser in the middle) were optimized. These optimizations used 3D brain transmit maps from an 8‐channel pTx system (details below) and were solved using a multi‐start strategy with 100 random seeds on a desktop computer (Intel i9‐10 900X @ 3.70 GHz, 64 GB of RAM, 16 cores) with MATLAB R2020b (The MathWorks). The solutions were analyzed in terms of their normalized root mean square error (NRMSE) for α and β.

For comparison, the circular polarized (CP) mode and RF shimming solutions for αdes = 15° were also calculated and analyzed.

3.2. Experiments

All experiments were performed using a 7T scanner (MAGNETOM Terra, Siemens Healthcare) in prototype research configuration, with an 8Tx/32Rx head coil (Nova Medical).

3.2.1. Dual Flip Angle R1 mapping

The proposed design was used to optimize excitation pulses for R1 mapping in a dual flip angle (DFA) experiment. 37 This application was considered because of its sensitivity to incidental MT effects (Eq. [1]), such that the B1rms distribution is expected to affect the spatial distribution of R^1.

The DFA method is a special case of VFA where only two spoiled gradient echo images (SPGR) are acquired, here, with flip angles αdes = {3°, 15°} (optimal for T1 1300 ms and TR = 8 ms 38 ). When holding TR constant, as done here, the Ernst equation can be linearized and R1 fitting can be performed via a voxelwise linear regression:

y=mx+bsSPGRsinα=E1sSPGRtanα+M01E1, (13a)
R^1=log(m)TR, (13b)

where m=E1=expTR×R1 is the slope of the linear regression, sSPGR are the measured magnitude SPGR signals and α are the flip angles. Voxelwise fitting was performed using α calculated from a Bloch simulation of the RF pulses and applying the incomplete spoiling correction proposed by Baudrexel et al. 39

Six healthy volunteers (25–36 years old, 2 males) were scanned in accordance with local ethical approval. The SPGR volumes (sagittal orientation, FOVAP×RL×FH = 240 × 240 × 192 mm3, resolution 1×1×1mm3, TR = 8 ms, TE = 3 ms, bandwidth =500Hz/Px), GRAPPA 40 acceleration factor of 2×2 with 32×32 (PE × SL directions, respectively) reference lines were acquired with 20 s of dummy pulses to reach steady state and stabilize the RF power amplifier output, 24 , 41 resulting in Tacq = 1 min 59 s per volume. All images were registered using FSL FLIRT 42 before R1 fitting and an additional MP2RAGE 43 acquired at the same resolution was used for segmentation with SPM12. 44 R1 mapping was repeated using different pulse types as described below, consisting of acquiring the two flip angle SPGRs for each pulse type (Figure 1).

FIGURE 1.

FIGURE 1

Protocol for in the in vivo experiments, chronologically from left to right. First (in yellow), B1+ and B0 mapping were performed, with a series of small flip angle spoiled gradient echo images (SPGRs) for relative B1+ maps of all transmit channels, and a quantitative B1+ and B0 map obtained with a multi‐echo actual flip angle imaging (AFI) acquisition. Second (in blue), an MP2RAGE was acquired to provide an independent anatomical reference. Last (in orange), R1 mapping was performed for different pulse types, consisting of acquiring two SPGRs (α = {3°, 15°}) for each pulse type. The dashed area represents the time spent performing the pulse design, which was done on the scanner for each SPGR before its acquisition.

3.2.2. Excitation pulse and data analysis

Before the pulse design, B1+ and B0 mapping was performed using a combination of a quantitative actual flip angle imaging 45 , 46 (AFI) map (Tacq = 2 min18 s; sagittal orientation, FOVAP×RL×FH=240×240×240mm3, resolution 5×5×5mm3, TR1/2 = 25/125 ms, α = 60°, TE = {0.75, 1.75, 10}ms, bandwidth =1000Hz/Px, GRAPPA 40 acceleration factor of 2 with 12 (phase encoding direction) reference lines, slice partial Fourier 6/8, elliptical scanning shutter, 10 s of dummy pulses) and relative per channel estimates via low flip angle SPGR images 47 (Tacq = 45 s each; sagittal orientation, FOVAP×RL×FH=240×240×224mm3, resolution 4×4×4mm3, TR = 10 ms, TE = 1 ms, bandwidth =1000Hz/Px, 10 s of dummy pulses), as per Figure 1. These maps were then used in the pulse design as described in Section 3.3, before acquiring data for the DFA experiment with the appropriate pulses; pulse calculation was fully scanner‐integrated within a MATLAB framework (R2012b) from the scanner vendor (release Syngo.MR VE12U‐SP01). The optimization was solved using a multi‐start strategy with 10 random starts on the system's console (Intel Xeon E5‐1620 v3 @ 3.5G Hz, 32 GB of RAM, 4 cores), taking 20 s.

The DFA R1 mapping experiment was conducted using three types of excitation pulses: (1) CP pulse; (2) flip angle optimized pulse with λ=0, referred to as FA pulse; (3) HY optimized pulse with λ=0.5 and βdes=1.2βmin, referred to as HY pulse.

Their implementation is described in Section 3.3. For all six subjects an R1 map was acquired using the above three types of excitation pulses. Additionally, for four of these subjects a test–retest of R1 mapping was performed with the FA and HY pulses. For the retest, the pulses were redesigned by performing a new optimization from the same B1+ and B0 maps, but using a different set of random starting points.

The R1 maps and their distributions in white matter (WM), gray matter (GM) and CSF were compared across all subjects and pulse types. For a voxel‐based analysis, all R1 maps were warped into a common Montreal Neurological Institute (MNI) space using DARTEL 48 as implemented in the hMRI toolbox, 49 and the coefficient of variation (CoV) across subjects was calculated for each pulse type. Furthermore, the test–retest R1 map acquisitions were compared to assess reproducibility.

3.3. Pulse design implementation

The design in Eq. (7) was performed for the excitation pulse types described in Subsection 3.2.2. The CP pulse consisted of a single rectangular RF pulse 200 μs long, whose amplitude was optimized to minimize the flip angle mean squared error with respect to the target. The FA and HY pulses consisted of 5 kT‐points 14 as in the simulations (200 μs RF rectangular sub‐pulses and 100 μs gradient blips), resulting in βdes=1.2βmin = {0.08 μT, 0.42 μT} for the HY pulses with αdes = {3°, 15°}, respectively. The optimization was solved using a multi‐start strategy in MATLAB with the interior‐point algorithm from the fmincon routine, providing first and second order analytical derivatives, and the following constraints: SAR10g,max=20W/kg (using vendor provided SAR model with NVOP=8) in first level SAR mode 50 ; Vmax=207V,𝒫max=24W, Gampmax=30mTm1, Gslewmax=80Tm1s1. To speed‐up the optimization, the number of voxels was compressed using k‐means clustering similarly to Tomi‐Tricot et al. 51 Voxels inside a brain mask (obtained using FSL BET 52 ) were classified according to their transmit sensitivities, off‐resonance and position, in a total of 500 clusters. The centroid of each cluster was then used as representative of the cluster properties, and the cluster size was used in the weighting matrix W (Eq. (7)).

4. RESULTS

4.1. Simulations

Figure 2 shows the flip angle and B1rms maps achieved with the different excitation pulses. As expected, the CP pulse has a central brightening inhomogeneity in both properties, whereas FA pulse has a very uniform flip angle map, but inhomogeneous B1rms distribution. When using HY pulse both flip angle and B1rms become uniform. Figure S1 shows that the maps obtained with a magnitude least squares RF shim are very similar to those of the CP pulse.

FIGURE 2.

FIGURE 2

Left column: transmit radiofrequency amplitude and gradients for the considered pulse types (top row: circular polarized (CP) mode pulse; middle row: flip angle optimized kT‐points pulse; bottom row: hybrid [HY] optimized kT‐points pulse). Their resulting flip angle and B1rms maps are shown in the middle and right columns, respectively, with the average ± SD of each property depicted below. Target flip angle 15° in all cases, target B1rms 0.42 μT for the HY pulse (λ = 0.5).

Figure 3A shows the Pareto fronts representing the trade‐off between the two terms of the proposed cost function (Eq. [7]). For βdes<βmin the errors in α and β increase substantially when λ{0,1} (see Figure 3B), but for βdesβmin the Pareto front resembles the L‐curve from regularization problems with most solutions located in the corner. This clustering of solutions occurs as the total NRMSE becomes practically constant for λ(0,1) as can be seen in Figure 3B. Moreover, as βdes increases up to 1.2βmin, the total NRMSE decreases driven by lower NRMSE (α) and then plateaus until βdes approaches 1 μT where it reaches SAR limits and increases the NRMSE of β, as can be seen in Figure 3C. Figure S2 expands the visualization of the cost function by plotting the NRMSE of α and β for all βdes and λ.

FIGURE 3.

FIGURE 3

(A) Pareto fronts of the proposed dual cost function for several targets βdes, including a blown‐up subfigure on the top right corner. (B) Total normalized root mean square error (NRMSE) as a function of λ for several targets βdes. (C) α, β, and total NRMSE as a function of βdes (x‐axis on top) and βdes/βmin (x‐axis on bottom) for λ=0.5; the gray area represents unfeasible targets where the circular polarized (CP) pulse would violate the specific absorption rate (SAR) limits.

Figure 4 shows the distributions of α and β for the excitation pulses studied. The distribution for CP pulse lies on the line defined by Eq. (10) showing large dispersion in both α and β, which are perfectly correlated because one is proportional to the other in this case. The FA pulse (λ=0) produces a narrow distribution of α, but wide distribution of β because the latter is not controlled by the calculation. Moreover, the B1rms optimized pulse (λ=1) has a narrow distribution of β, but wide distribution of α. The HY pulse (λ=0.5) achieves both narrow α and β distributions.

FIGURE 4.

FIGURE 4

Contours of the flip angle α and root‐mean‐squared B1+ β spatial distributions for several pulses: circular polarized (CP) pulse and pTx pulses optimized with λ={0,0.5,1} representing a flip angle (FA) optimization (λ=0), a hybrid (HY) optimization (λ=0.5) and a B1rms optimization (λ=1). The gray area represents unfeasible points according to Eqs. (11) and (12), whereas the boundary represents the relationship between α and β valid for any static RF shimming solution (including CP mode; Eq. [10]). The distribution contours were slightly smoothed to aid visualization. The dashed black lines depict the two targets αdes = 15° and βdes = 0.42 μT (Eq. [7]).

4.2. Experiments

Figure 5 shows the R^1 maps for one subject estimated using different pulses; the corresponding α and β maps are given in Figure S3 and the R^1 maps for all subjects are in Figure S4. With CP mode the R^1 values are fairly uniform, but noisy in the center (green arrow; see zoom‐ins), corresponding to the area of higher α and β intensity. The noisy R^1 estimation is no longer present with the FA pulses, but severe shading is observed (blue arrows). Finally, using HY pulses R^1 estimation stays precise and no shading is observed. The histograms of the R^1 distribution in Figure 6 show tall and narrower distributions in WM and GM with CP and HY pulses, as well as similar mean R^1 in GM, but HY pulses having a higher mean R^1 in WM. Moreover, FA pulses cause a broader R^1 distribution in WM and GM, with mean R^1 also different from the other pulses. In CSF, all pulse types show similar mean and dispersion of R^1.

FIGURE 5.

FIGURE 5

Transverse, coronal and sagittal slices of the R^1 maps from subject B using circular polarized (CP) pulses (left column), flip angle (FA) pulses (middle column) and hybrid (HY) pulses (right column). Below each sagittal slice is the average ± SD of R^1 in white matter (WM) for the respective pulse type.

FIGURE 6.

FIGURE 6

Histograms of the R^1 distribution from subject B in (A) white matter, (B) gray matter and (C) CSF for three pulse types: circular polarized (CP), flip angle (FA), and hybrid (HY).

The WM distribution of R^1 for all subjects is in Figure 7. Both CP and HY pulses show consistent R^1 distributions across all subjects, with mean R^1 being smaller for CP pulses, whereas FA pulses exhibit a big variability in the location and dispersion of the distributions. The CoV of R^1 across subjects is shown in Figure 8 after diffeomorphic registration of all maps to the MNI space. The CP and HY pulses exhibit a smaller R^1 CoV in WM, whereas FA pulses have the largest CoV that changes over the WM (blue arrow) because of different shadings across subjects.

FIGURE 7.

FIGURE 7

R^1 distribution in white matter for all subjects using (A) circular polarized (CP) pulses, (B) flip angle (FA) pulses, and (C) hybrid (HY) pulses.

FIGURE 8.

FIGURE 8

Coefficient of variation (CoV) of the normalized R^1 maps across all subjects for each pulse type: circular polarized (CP) pulses (left column), flip angle (FA) pulses (middle column) and hybrid (HY) pulses (right column). Below each sagittal slice is the average CoV of R^1 in white matter (WM) for the respective pulse type.

The R^1 maps from subject C for the scan‐rescan test are in Figure 9. With FA pulses the R^1 maps obtained in the two scans show considerable differences as indicated by the green and blue arrows, resulting in a different mean R^1 in WM (0.713s−1 vs. 0.834s−1). Moreover, HY pulses yielded similar R^1 maps in the two scans, with both looking equally uniform and practically the same mean R^1 in WM (0.783s−1 vs. 0.769s−1). Figure 10 shows the R^1 distributions in WM for all subjects across the two scans. Overall, FA designs yield a different distribution when scanning the same subject with new pulses and that is non‐unimodal in some cases. When using different HY pulses the distributions are unimodal and very close to each other. In three of four cases, we observed a shift toward larger R^1 values observed in the second HY pulse scan, which was performed later during each scanning session.

FIGURE 9.

FIGURE 9

R^1 maps from two independent scans for one subject using flip angle (FA) pulses (left) and hybrid (HY) pulses (right). The average ± SD of R^1 in white matter (WM) is shown below the sagittal slice of each scan. Different pulses were used in each scan. The maps shown belong to subject C.

FIGURE 10.

FIGURE 10

Dual‐sided violin plots of the R^1 distribution in white matter (WM) for the first scan (top side of the violin) and the second scan (bottom side of the violin) for four subjects. Distributions obtained with (A) flip angle (FA) pulses and (B) hybrid (HY) pulses.

5. DISCUSSION

This work presents a novel pTx pulse design that simultaneously controls the spatial distributions of flip angle and B1rms produced by an RF pulse. These dictate the rotation of the free‐water magnetization and the saturation of the semisolid magnetization, respectively, being relevant to applications affected directly or indirectly by MT effects. Here, we showed how the proposed design improves consistency of R1 mapping at 7T by controlling incidental MT effects.

Although RF shimming is a straightforward solution to homogenize both flip angle (α) and B1rms (β) distributions by targeting B1+ (or B1+), 12 , 13 performance for full 3D coverage using our 8‐channel Tx head coil is often similar to that of CP mode 11 (e.g., Figure S1). Current pTx pulse designs overcome this limitation by instead targeting the flip angle or B1rms distribution produced by an RF pulse, but not both—this results in a wide distribution of the disregarded property as shown in Figure 4. Although for off‐resonance saturation pulses it is sufficient to consider the distribution of B1rms, but not flip angle variation (as in the PUSH method 24 ), for on‐resonance pulses both properties are important in determining the magnetization dynamics of systems with MT. The proposed HY design is a generalization of conventional pulse designs that only consider α and the PUSH design 24 that only considers β by performing a dual cost function optimization.

5.1. HY optimization performance

The HY optimization introduces two new parameters compared to a FA optimization: (1) βdes, the target B1rms; and (2) λ, the balancing parameter. Theory shows that a lower bound on β can be derived based on the desired on‐resonance flip angle αdes. Simulation results in Figure 3 show that for HY optimizations (λ(0,1)) the NRMSE of α and β reduce considerably when increasing βdes until 1.2βmin, after which it plateaus until βdes reaches the SAR limits and then the NRMSE of β increases sharply. In this case, the NRMSE of α does not increase because its target αdes is achievable within βdes, that is, βdes>βmin. The threshold 1.2βmin is likely to depend on several factors (e.g., coil properties) the volume being imaged and specific properties of the pulse design.

Simulations showed that the pulse design appears to be insensitive to balancing parameter λ, with the NRMSE of α and β only changing considerably when λ1 and λ0, respectively. This implies that the optimization finds solutions with simultaneously uniform α and β without having to perform substantial trade‐offs; therefore, an even balancing λ=0.5 was used for the experiments. The insensitivity to λ meant that most of the points in the Pareto front (Figure 3A) were concentrated in a corner, resembling the L‐curve behavior seen in other regularized optimizations. 34 The local SAR was also found be largely insensitive to λ when this is >0, depending mostly on βdes (results not shown).

The performance of the proposed design in 3D is mostly limited by the β optimization. This was observed in the PUSH study 24 that also reported worse homogeneity in 3D imaging because of the limited variability in the head‐foot direction provided by the coil used. Although for flip angle optimization this can be mitigated by using gradient encoding, β only depends on the transmit sensitivities and RF waveforms. Nevertheless, this key difference provides greater control in achieving both αdes and βdes targets as gradients are a degree of freedom that differentiate the two.

5.2. DFA R1 mapping

The HY pulse design was used for R1 mapping with the DFA method that is known to be sensitive to incidental MT effects. 28 , 29 , 30 , 31 Although flip angle inhomogeneities can be corrected in the fit (Eq. [13]) and cause “noisy”/imprecise estimation because of ill‐conditioned fitting, incidental MT effects created by β cannot be corrected in single pool VFA experiments and cause bias. 28 , 29 , 30 , 31 The impact of flip angle inhomogeneity was observed in Figure 5 where R^1 was noisy in the central regions with CP pulses, which disappeared when using FA and HY pulses. However, the inhomogeneous β produced by the FA pulses introduced severe spatial inhomogeneity of R^1. By homogenizing β with the HY pulses the shading was suppressed while preserving a precise estimation because of a homogeneous α. These findings were verified in the CoV of the normalized R^1 maps across all subjects (Figure 8), with HY pulses having a small SD similar to that of CP pulses, and last, FA pulses exhibiting the largest variability because of different shadings among subjects. The WM distribution of R^1 in Figure 7 also showed that FA pulses yielded the least consistent distributions across all subjects, whereas CP and HY pulses gave very similar distributions. This can be explained by the fact that both CP and HY pulses deliver a similar β for each subject, whereas with FA pulses this can change as is not controlled by the optimization.

The R1 mapping reproducibility improved substantially when using HY pulses (Figure 9). Both sets of HY pulses yielded similar R^1 maps, whereas with FA pulses test–retest R^1 maps showed large differences in the estimated values. For all subjects the WM distribution of R^1 changed considerably between the two scans with FA pulses, but retained a consistent unimodal distribution with HY pulses. However, with the latter there was generally a shift in R^1 toward longer values in the second scan. A separate phantom experiment revealed some small deviations in the amplitude of the RF power amplifiers (RFPA) (Figure S5) over time that could explain this shift because (by definition) the second scan was always performed later in the scanning session. We and others have reported some instability relating to RF power drifting specifically on this RFPA model and generation 24 , 41 — 20 seconds of dummycycles were used to minimize this effect as far as possible, but it seems this was not a complete solution.

Overall, the results indicated that homogenizing α with traditional FA pulse design led to worse R^1 maps compared to CP pulses by introducing a strong shading across the maps. The HY design solves this problem by homogenizing β, which homogenizes the MT bias and, therefore, results in uniform R^1 maps. Interestingly, despite β produced by CP mode being inhomogeneous, R^1 maps using this mode showed less bias than FA design. One possible reason was that the CP pulses applied here were shorter and did not involve gradients blips compared to the FA and HY kT‐points pulses that could make them less sensitive to errors in the B1+ and B0 maps 53 as well as eddy currents. 54 VFA experiments are sensitive to other sources of bias, such as incomplete spoiling. 55 We sought to minimize this by using the correction factor for proposed by Baudrexel et al., 39 and reduced scanning time to mitigate motion. Nevertheless, any intra‐scan and inter‐scan motion can affect R1 mapping by changing the receive sensitivity, 56 but also the B1+ and B0 fields, 57 which in turn changes the α and β maps produced by the RF pulses, and these effects would be less predictable for the pTx methods used than CP mode.

This said, we also believe that the relatively good performance of CP mode compared with the pTx methods in our results is likely down to the choice of flip angles and how the signal biases appearing in each of the two separate component images interacted to cause a bias in the measured R1. To test this we conducted an experiment using other nominal flip angles, which yielded less self‐consistent R^1 maps when using CP mode (Figure S6). Ultimately there will be circumstances in which CP mode can give reasonable results, and pTx is not necessary; this is a matter that must be addressed on a study specific basis. However, our results show that if a pTx design is used, then the presented HY method provides an effective means for mitigating incidental MT effects, and these effects can result in quite severe artefacts if using more standard flip angle based design methods.

5.3. Assumptions, extensions, and other applications

The impact of homogenizing β is smaller than homogenizing α because of (1) the semisolid magnetization being a fraction of the free‐water magnetization; and (2) the semisolid magnetization having virtually no transverse magnetization to create signal, so it is only via exchange with the free‐water magnetization that it produces a visible effect. Nevertheless, this can be important for quantitative methods like MPM, 58 quantitative MT, 25 and IR based R1 mapping methods 32 , 59 where shading in R1 mapping have also been observed with MP2RAGE. 60

Here, we explored DFA R1 mapping with each pulse designed to use the smallest reasonable amount of B1rms (βdes=1.2βmin), but the design could also be used to create the same B1rms for all pulses as in the controlled saturation MT approach. 30 Moreover, the design approach can be used generally, both for alternative k‐space trajectories to kT‐points (e.g., spiral nonselective, 15 spokes, 61 , 62 etc.) or high tip angle designs such as for inversion or refocusing pulses, as well as for universal pulses. 63 For the case of high tip angle pulses, longer pulse durations may be necessary such that relaxation and exchange can no longer be neglected. In that scenario, the magnetization response of both pools becomes intertwined, violating the assumption in the PUSH design that the pools are independent during RF exposure. This scenario would require more complex designs that are beyond the scope of this study.

6. CONCLUSION

This work proposed a novel HY optimization of RF pulses to homogenize both their flip angle and B1rms distributions simultaneously. Simulations showed that it is possible to obtain pulses with both uniform flip angle and B1rms without big detriment of each property compared to an individual optimization. As an exemplar, we applied the approach to single pool R1 mapping and showed that the HY optimized pulses produce clearly more uniform estimates than flip angle optimized pulses, because of this effect. In this application, the HY pulse design provides a way to spatially control MT effects, therefore, its bias, to achieve uniform R^1 estimation, as well as to control the flip angles that impact estimation precision. The HY design method is general and could be used in other scenarios such as other quantitative imaging methods, or for non‐quantitative sequences where incidental MT effects have a significant effect on contrast.

FUNDING INFORMATION

National Institute for Health Research (NIHR) Biomedical Research Centre based at Guy's and St Thomas' NHS Foundation Trust and King's College London and/or the NIHR Clinical Research Facility, funded by the King's College London & Imperial College London EPSRC Centre for Doctoral Training in Medical Imaging [EP/L015226/1], by core funding from the Wellcome/EPSRC Centre for Medical Engineering [WT203148/Z/16/Z] and by a Wellcome Trust Collaboration in Science Award [WT201526/Z/16/Z].

CONFLICT OF INTEREST STATEMENT

R.T.T., P.L., R.G., and D.R. work for Siemens Healthcare.

Supporting information

Figure S1. Results obtained with a magnitude least squares (MLS) RF shimming solution. Left column: polar plot with the amplitude (Volts) and phases (radians) of the MLS RF shim (filled circles), compared to those of the CP pulse (empty circles). Middle column: respective flip angle map. Right column: respective B1rms map.

Figure S2. Surfaces of the two terms in the pulse design cost function: (A) NRMSE of the flip angle and (B) NRMSE of the B1rms, for all optimized values of λ and βdes.

Figure S3. Flip angle (left column) and B1rms (right column) maps of each pulse type (CP, FA optimized, HY optimized) for the two SPGRs acquired to estimate the R^1 map in Figure 5. Top and bottom rows correspond to the SPGRs acquired with αdes = 3° and αdes = 15°, respectively.

Figure S4. Sagittal view of the R^1 maps acquired with CP, FA and HY pulses (top, middle and bottom rows respectively) for all subjects (left to right: subject A, B, C, D, E and F). To navigate through different slices this document needs to be open on a JavaScript‐supporting PDF viewer, such as Adobe Acrobat Reader.

Figure S5. Variation of the (A) amplitude and (B) phase of the 5 sub‐pulses in the same kT‐points pulse over time relative to the 1st scan, where the traces were measured using the directional couplers (DICOs). The bar range for each point represents the standard deviation across the 5 sub‐pulses. The dashed lines in (B) represent the phase drift with respect to the average of all channels.

Figure S6. R^1 maps obtained with CP pulses for different combinations of flip angles: columns are different T1‐weighted images, from αnom = 12° (left), αnom = 15° (middle), to αnom = 18° (right); rows are different PD‐weighted images, from αnom = 2° (top) to αnom = 4° (bottom). Below each sagittal slice is the average ± standard deviation of R^1 in WM for the respective combination of flip angles.

MRM-93-1090-s001.pdf (10.7MB, pdf)

ACKNOWLEDGMENTS

This research was supported by the National Institute for Health Research (NIHR) Biomedical Research Centre based at Guy's and St Thomas' NHS Foundation Trust and King's College London and/or the NIHR Clinical Research Facility, funded by the King's College London & Imperial College London EPSRC Centre for Doctoral Training in Medical Imaging [EP/L015226/1], by core funding from the Wellcome/EPSRC Centre for Medical Engineering [WT203148/Z/16/Z] and by a Wellcome Trust Collaboration in science award [WT201526/Z/16/Z]. For the purpose of Open Access, the Author has applied a CC BY public copyright license to any Author Accepted Manuscript version arising from this submission. The views expressed are those of the author(s) and not necessarily those of the NHS, the NIHR or the Department of Health and Social Care.

Correction added after online publication 25th October 2024. The author has updated the Acknowledgments to include a funding source.

Leitão D, Tomi‐Tricot R, Bridgen P, et al. Parallel transmit hybrid pulse design for controlled on‐resonance magnetization transfer in R 1 mapping at 7T. Magn Reson Med. 2025;93(3):1090‐1103. doi: 10.1002/mrm.30333

DATA AVAILABILITY STATEMENT

According to United Kingdom research councils' Common Principles on Data Policy and Wellcome Trust's Policy on data, software and materials management and sharing, all simulated data supporting this study is openly available at https://github.com/mriphysics/HybridPTx (hash 98fc91d at time of submission). This will exclude proprietary code from SIEMENS, but that can be shared on request by agreement including the vendor, and in vivo MRI data because of the terms of the ethical approval under which they were acquired.

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Figure S1. Results obtained with a magnitude least squares (MLS) RF shimming solution. Left column: polar plot with the amplitude (Volts) and phases (radians) of the MLS RF shim (filled circles), compared to those of the CP pulse (empty circles). Middle column: respective flip angle map. Right column: respective B1rms map.

Figure S2. Surfaces of the two terms in the pulse design cost function: (A) NRMSE of the flip angle and (B) NRMSE of the B1rms, for all optimized values of λ and βdes.

Figure S3. Flip angle (left column) and B1rms (right column) maps of each pulse type (CP, FA optimized, HY optimized) for the two SPGRs acquired to estimate the R^1 map in Figure 5. Top and bottom rows correspond to the SPGRs acquired with αdes = 3° and αdes = 15°, respectively.

Figure S4. Sagittal view of the R^1 maps acquired with CP, FA and HY pulses (top, middle and bottom rows respectively) for all subjects (left to right: subject A, B, C, D, E and F). To navigate through different slices this document needs to be open on a JavaScript‐supporting PDF viewer, such as Adobe Acrobat Reader.

Figure S5. Variation of the (A) amplitude and (B) phase of the 5 sub‐pulses in the same kT‐points pulse over time relative to the 1st scan, where the traces were measured using the directional couplers (DICOs). The bar range for each point represents the standard deviation across the 5 sub‐pulses. The dashed lines in (B) represent the phase drift with respect to the average of all channels.

Figure S6. R^1 maps obtained with CP pulses for different combinations of flip angles: columns are different T1‐weighted images, from αnom = 12° (left), αnom = 15° (middle), to αnom = 18° (right); rows are different PD‐weighted images, from αnom = 2° (top) to αnom = 4° (bottom). Below each sagittal slice is the average ± standard deviation of R^1 in WM for the respective combination of flip angles.

MRM-93-1090-s001.pdf (10.7MB, pdf)

Data Availability Statement

According to United Kingdom research councils' Common Principles on Data Policy and Wellcome Trust's Policy on data, software and materials management and sharing, all simulated data supporting this study is openly available at https://github.com/mriphysics/HybridPTx (hash 98fc91d at time of submission). This will exclude proprietary code from SIEMENS, but that can be shared on request by agreement including the vendor, and in vivo MRI data because of the terms of the ethical approval under which they were acquired.


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