Abstract
The beta-oxidation of saturated fatty acids in Saccharomyces cerevisiae is confined exclusively to the peroxisomal compartment of the cell. Processing of mono- and polyunsaturated fatty acids with the double bond at an even position requires, in addition to the basic beta-oxidation machinery, the contribution of the NADPH-dependent enzyme 2,4-dienoyl-CoA reductase. Here we show by biochemical cell fractionation studies that this enzyme is a typical constituent of peroxisomes. As a consequence, the beta-oxidation of mono- and polyunsaturated fatty acids with double bonds at even positions requires stoichiometric amounts of intraperoxisomal NADPH. We suggest that NADP-dependent isocitrate dehydrogenase isoenzymes function in an NADP redox shuttle across the peroxisomal membrane to keep intraperoxisomal NADP reduced. This is based on the finding of a third NADP-dependent isocitrate dehydrogenase isoenzyme, Idp3p, next to the already known mitochondrial and cytosolic isoenzymes, which turned out to be present in the peroxisomal matrix. Our proposal is strongly supported by the observation that peroxisomal Idp3p is essential for growth on the unsaturated fatty acids arachidonic, linoleic and petroselinic acid, which require 2, 4-dienoyl-CoA reductase activity. On the other hand, growth on oleate which does not require 2,4-dienoyl-CoA reductase, and NADPH is completely normal in Deltaidp3 cells.
Full Text
The Full Text of this article is available as a PDF (712.4 KB).
Selected References
These references are in PubMed. This may not be the complete list of references from this article.
- Bremer J., Wojtczak A. B. Factors controlling the rate of fatty acid -oxidation in rat liver mitochondria. Biochim Biophys Acta. 1972 Dec 8;280(4):515–530. doi: 10.1016/0005-2760(72)90131-2. [DOI] [PubMed] [Google Scholar]
- Dieuaide-Noubhani M., Novikov D., Baumgart E., Vanhooren J. C., Fransen M., Goethals M., Vandekerckhove J., Van Veldhoven P. P., Mannaerts G. P. Further characterization of the peroxisomal 3-hydroxyacyl-CoA dehydrogenases from rat liver. Relationship between the different dehydrogenases and evidence that fatty acids and the C27 bile acids di- and tri-hydroxycoprostanic acids are metabolized by separate multifunctional proteins. Eur J Biochem. 1996 Sep 15;240(3):660–666. doi: 10.1111/j.1432-1033.1996.0660h.x. [DOI] [PubMed] [Google Scholar]
- Dommes P., Dommes V., Kunau W. H. beta-Oxidation in Candida tropicalis. Partial purification and biological function of an inducible 2,4-dienoyl coenzyme A reductase. J Biol Chem. 1983 Sep 25;258(18):10846–10852. [PubMed] [Google Scholar]
- Einerhand A. W., Kos W. T., Distel B., Tabak H. F. Characterization of a transcriptional control element involved in proliferation of peroxisomes in yeast in response to oleate. Eur J Biochem. 1993 May 15;214(1):323–331. doi: 10.1111/j.1432-1033.1993.tb17927.x. [DOI] [PubMed] [Google Scholar]
- Elgersma Y., Tabak H. F. Proteins involved in peroxisome biogenesis and functioning. Biochim Biophys Acta. 1996 Oct 29;1286(3):269–283. doi: 10.1016/s0304-4157(96)00012-3. [DOI] [PubMed] [Google Scholar]
- Elgersma Y., Vos A., van den Berg M., van Roermund C. W., van der Sluijs P., Distel B., Tabak H. F. Analysis of the carboxyl-terminal peroxisomal targeting signal 1 in a homologous context in Saccharomyces cerevisiae. J Biol Chem. 1996 Oct 18;271(42):26375–26382. doi: 10.1074/jbc.271.42.26375. [DOI] [PubMed] [Google Scholar]
- Elgersma Y., van Roermund C. W., Wanders R. J., Tabak H. F. Peroxisomal and mitochondrial carnitine acetyltransferases of Saccharomyces cerevisiae are encoded by a single gene. EMBO J. 1995 Jul 17;14(14):3472–3479. doi: 10.1002/j.1460-2075.1995.tb07353.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Elgersma Y., van Roermund C. W., Wanders R. J., Tabak H. F. Peroxisomal and mitochondrial carnitine acetyltransferases of Saccharomyces cerevisiae are encoded by a single gene. EMBO J. 1995 Jul 17;14(14):3472–3479. doi: 10.1002/j.1460-2075.1995.tb07353.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Gietz R. D., Sugino A. New yeast-Escherichia coli shuttle vectors constructed with in vitro mutagenized yeast genes lacking six-base pair restriction sites. Gene. 1988 Dec 30;74(2):527–534. doi: 10.1016/0378-1119(88)90185-0. [DOI] [PubMed] [Google Scholar]
- Gould S. J., Keller G. A., Schneider M., Howell S. H., Garrard L. J., Goodman J. M., Distel B., Tabak H., Subramani S. Peroxisomal protein import is conserved between yeast, plants, insects and mammals. EMBO J. 1990 Jan;9(1):85–90. doi: 10.1002/j.1460-2075.1990.tb08083.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Haselbeck R. J., McAlister-Henn L. Isolation, nucleotide sequence, and disruption of the Saccharomyces cerevisiae gene encoding mitochondrial NADP(H)-specific isocitrate dehydrogenase. J Biol Chem. 1991 Feb 5;266(4):2339–2345. [PubMed] [Google Scholar]
- Hettema E. H., van Roermund C. W., Distel B., van den Berg M., Vilela C., Rodrigues-Pousada C., Wanders R. J., Tabak H. F. The ABC transporter proteins Pat1 and Pat2 are required for import of long-chain fatty acids into peroxisomes of Saccharomyces cerevisiae. EMBO J. 1996 Aug 1;15(15):3813–3822. [PMC free article] [PubMed] [Google Scholar]
- Hiltunen J. K. Peroxisomes and beta-oxidation of long-chain unsaturated carboxylic acids. Scand J Clin Lab Invest Suppl. 1991;204:33–46. doi: 10.3109/00365519109104593. [DOI] [PubMed] [Google Scholar]
- Jiang L. L., Kobayashi A., Matsuura H., Fukushima H., Hashimoto T. Purification and properties of human D-3-hydroxyacyl-CoA dehydratase: medium-chain enoyl-CoA hydratase is D-3-hydroxyacyl-CoA dehydratase. J Biochem. 1996 Sep;120(3):624–632. doi: 10.1093/oxfordjournals.jbchem.a021458. [DOI] [PubMed] [Google Scholar]
- Karpichev I. V., Luo Y., Marians R. C., Small G. M. A complex containing two transcription factors regulates peroxisome proliferation and the coordinate induction of beta-oxidation enzymes in Saccharomyces cerevisiae. Mol Cell Biol. 1997 Jan;17(1):69–80. doi: 10.1128/mcb.17.1.69. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Kunau W. H., Bühne S., de la Garza M., Kionka C., Mateblowski M., Schultz-Borchard U., Thieringer R. Comparative enzymology of beta-oxidation. Biochem Soc Trans. 1988 Jun;16(3):418–420. doi: 10.1042/bst0160418. [DOI] [PubMed] [Google Scholar]
- Kunau W. H., Dommes V., Schulz H. beta-oxidation of fatty acids in mitochondria, peroxisomes, and bacteria: a century of continued progress. Prog Lipid Res. 1995;34(4):267–342. doi: 10.1016/0163-7827(95)00011-9. [DOI] [PubMed] [Google Scholar]
- Leenders F., Tesdorpf J. G., Markus M., Engel T., Seedorf U., Adamski J. Porcine 80-kDa protein reveals intrinsic 17 beta-hydroxysteroid dehydrogenase, fatty acyl-CoA-hydratase/dehydrogenase, and sterol transfer activities. J Biol Chem. 1996 Mar 8;271(10):5438–5442. doi: 10.1074/jbc.271.10.5438. [DOI] [PubMed] [Google Scholar]
- Leighton F., Poole B., Beaufay H., Baudhuin P., Coffey J. W., Fowler S., De Duve C. The large-scale separation of peroxisomes, mitochondria, and lysosomes from the livers of rats injected with triton WR-1339. Improved isolation procedures, automated analysis, biochemical and morphological properties of fractions. J Cell Biol. 1968 May;37(2):482–513. doi: 10.1083/jcb.37.2.482. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Loftus T. M., Hall L. V., Anderson S. L., McAlister-Henn L. Isolation, characterization, and disruption of the yeast gene encoding cytosolic NADP-specific isocitrate dehydrogenase. Biochemistry. 1994 Aug 16;33(32):9661–9667. doi: 10.1021/bi00198a035. [DOI] [PubMed] [Google Scholar]
- Luo Y., Karpichev I. V., Kohanski R. A., Small G. M. Purification, identification, and properties of a Saccharomyces cerevisiae oleate-activated upstream activating sequence-binding protein that is involved in the activation of POX1. J Biol Chem. 1996 May 17;271(20):12068–12075. doi: 10.1074/jbc.271.20.12068. [DOI] [PubMed] [Google Scholar]
- Marzioch M., Erdmann R., Veenhuis M., Kunau W. H. PAS7 encodes a novel yeast member of the WD-40 protein family essential for import of 3-oxoacyl-CoA thiolase, a PTS2-containing protein, into peroxisomes. EMBO J. 1994 Oct 17;13(20):4908–4918. doi: 10.1002/j.1460-2075.1994.tb06818.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Matsuo H., Strauss J. F., 3rd Peroxisome proliferators and retinoids affect JEG-3 choriocarcinoma cell function. Endocrinology. 1994 Sep;135(3):1135–1145. doi: 10.1210/endo.135.3.8070357. [DOI] [PubMed] [Google Scholar]
- Moser H. W. Peroxisomal disorders. Clin Biochem. 1991 Aug;24(4):343–351. doi: 10.1016/0009-9120(91)80009-r. [DOI] [PubMed] [Google Scholar]
- Munujos P., Coll-Cantí J., González-Sastre F., Gella F. J. Assay of succinate dehydrogenase activity by a colorimetric-continuous method using iodonitrotetrazolium chloride as electron acceptor. Anal Biochem. 1993 Aug 1;212(2):506–509. doi: 10.1006/abio.1993.1360. [DOI] [PubMed] [Google Scholar]
- Nada M. A., Roe C. R., Schulz H. Radioactive assay of 2,4-dienoyl-coenzyme A reductase. Anal Biochem. 1992 Feb 14;201(1):62–67. doi: 10.1016/0003-2697(92)90174-6. [DOI] [PubMed] [Google Scholar]
- Novikov D. K., Vanhove G. F., Carchon H., Asselberghs S., Eyssen H. J., Van Veldhoven P. P., Mannaerts G. P. Peroxisomal beta-oxidation. Purification of four novel 3-hydroxyacyl-CoA dehydrogenases from rat liver peroxisomes. J Biol Chem. 1994 Oct 28;269(43):27125–27135. [PubMed] [Google Scholar]
- Osmundsen H., Bremer J., Pedersen J. I. Metabolic aspects of peroxisomal beta-oxidation. Biochim Biophys Acta. 1991 Sep 11;1085(2):141–158. doi: 10.1016/0005-2760(91)90089-z. [DOI] [PubMed] [Google Scholar]
- Qin Y. M., Poutanen M. H., Helander H. M., Kvist A. P., Siivari K. M., Schmitz W., Conzelmann E., Hellman U., Hiltunen J. K. Peroxisomal multifunctional enzyme of beta-oxidation metabolizing D-3-hydroxyacyl-CoA esters in rat liver: molecular cloning, expression and characterization. Biochem J. 1997 Jan 1;321(Pt 1):21–28. doi: 10.1042/bj3210021. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Reddy J. K., Mannaerts G. P. Peroxisomal lipid metabolism. Annu Rev Nutr. 1994;14:343–370. doi: 10.1146/annurev.nu.14.070194.002015. [DOI] [PubMed] [Google Scholar]
- Rottensteiner H., Kal A. J., Filipits M., Binder M., Hamilton B., Tabak H. F., Ruis H. Pip2p: a transcriptional regulator of peroxisome proliferation in the yeast Saccharomyces cerevisiae. EMBO J. 1996 Jun 17;15(12):2924–2934. [PMC free article] [PubMed] [Google Scholar]
- Rydström J., Da Cruz A. T., Ernster L. Steady-state kinetics of mitochondrial nicotinamide nucleotide transhydrogenase. 2. The energy-linked reaction. Eur J Biochem. 1971 Nov 11;23(2):212–219. doi: 10.1111/j.1432-1033.1971.tb01611.x. [DOI] [PubMed] [Google Scholar]
- Schulz H. Beta oxidation of fatty acids. Biochim Biophys Acta. 1991 Jan 28;1081(2):109–120. doi: 10.1016/0005-2760(91)90015-a. [DOI] [PubMed] [Google Scholar]
- Seedorf U., Brysch P., Engel T., Schrage K., Assmann G. Sterol carrier protein X is peroxisomal 3-oxoacyl coenzyme A thiolase with intrinsic sterol carrier and lipid transfer activity. J Biol Chem. 1994 Aug 19;269(33):21277–21283. [PubMed] [Google Scholar]
- Smith P. K., Krohn R. I., Hermanson G. T., Mallia A. K., Gartner F. H., Provenzano M. D., Fujimoto E. K., Goeke N. M., Olson B. J., Klenk D. C. Measurement of protein using bicinchoninic acid. Anal Biochem. 1985 Oct;150(1):76–85. doi: 10.1016/0003-2697(85)90442-7. [DOI] [PubMed] [Google Scholar]
- Van der Leij I., Franse M. M., Elgersma Y., Distel B., Tabak H. F. PAS10 is a tetratricopeptide-repeat protein that is essential for the import of most matrix proteins into peroxisomes of Saccharomyces cerevisiae. Proc Natl Acad Sci U S A. 1993 Dec 15;90(24):11782–11786. doi: 10.1073/pnas.90.24.11782. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Van der Leij I., Van den Berg M., Boot R., Franse M., Distel B., Tabak H. F. Isolation of peroxisome assembly mutants from Saccharomyces cerevisiae with different morphologies using a novel positive selection procedure. J Cell Biol. 1992 Oct;119(1):153–162. doi: 10.1083/jcb.119.1.153. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Velculescu V. E., Zhang L., Vogelstein B., Kinzler K. W. Serial analysis of gene expression. Science. 1995 Oct 20;270(5235):484–487. doi: 10.1126/science.270.5235.484. [DOI] [PubMed] [Google Scholar]
- Voorn-Brouwer T., van der Leij I., Hemrika W., Distel B., Tabak H. F. Sequence of the PAS8 gene, the product of which is essential for biogenesis of peroxisomes in Saccharomyces cerevisiae. Biochim Biophys Acta. 1993 Nov 16;1216(2):325–328. doi: 10.1016/0167-4781(93)90166-b. [DOI] [PubMed] [Google Scholar]
- Wanders R. J., IJlst L., van Gennip A. H., Jakobs C., de Jager J. P., Dorland L., van Sprang F. J., Duran M. Long-chain 3-hydroxyacyl-CoA dehydrogenase deficiency: identification of a new inborn error of mitochondrial fatty acid beta-oxidation. J Inherit Metab Dis. 1990;13(3):311–314. doi: 10.1007/BF01799383. [DOI] [PubMed] [Google Scholar]
- Wanders R. J., Schutgens R. B., Barth P. G. Peroxisomal disorders: a review. J Neuropathol Exp Neurol. 1995 Sep;54(5):726–739. doi: 10.1097/00005072-199509000-00016. [DOI] [PubMed] [Google Scholar]
- Yamamoto S., Atomi H., Ueda M., Tanaka A. Novel NADP-linked isocitrate dehydrogenase present in peroxisomes of n-alkane-utilizing yeast, Candida tropicalis: comparison with mitochondrial NAD-linked isocitrate dehydrogenase. Arch Microbiol. 1995 Feb;163(2):104–111. doi: 10.1007/BF00381783. [DOI] [PubMed] [Google Scholar]
- Zhang J. W., Lazarow P. B. PEB1 (PAS7) in Saccharomyces cerevisiae encodes a hydrophilic, intra-peroxisomal protein that is a member of the WD repeat family and is essential for the import of thiolase into peroxisomes. J Cell Biol. 1995 Apr;129(1):65–80. doi: 10.1083/jcb.129.1.65. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Zhao W. N., McAlister-Henn L. Expression and gene disruption analysis of the isocitrate dehydrogenase family in yeast. Biochemistry. 1996 Jun 18;35(24):7873–7878. doi: 10.1021/bi9605189. [DOI] [PubMed] [Google Scholar]
- van den Bosch H., Schutgens R. B., Wanders R. J., Tager J. M. Biochemistry of peroxisomes. Annu Rev Biochem. 1992;61:157–197. doi: 10.1146/annurev.bi.61.070192.001105. [DOI] [PubMed] [Google Scholar]