Skip to main content
Turkish Journal of Chemistry logoLink to Turkish Journal of Chemistry
. 2024 Oct 18;48(6):809–820. doi: 10.55730/1300-0527.3700

Synthesis, structure, Hirshfeld surface analysis, and molecular docking studies of the cocrystal between the Cu(II) complex of salicylic acid and uncoordinated piracetam

Nazokat N YULDASHEVA 1, Ikram I ABDULLAEV 1, Oybek I KHUDOYBERGANOV 1, Lola A GANDJAEVA 1,2, Pirnazar K KODAMBOEV 1, Elyor Sh SAMANDAROV 1, Adkhamjon S NORMAMATOV 3, Abror Kh RUZMETOV 3, Yuldosh Y YAKUBOV 3, C BALAKRISHNAN 4, Bakhtiyar T IBRAGIMOV 5, Aziz B IBRAGIMOV 3,*
PMCID: PMC11706295  PMID: 39780845

Abstract

The cocrystal (or supramolecular complex) between the Cu(II) complex of salicylic acid and uncoordinated piracetam has been synthesized. Its structure is characterized by elemental analysis, FT-IR, UV-Vis spectroscopy, and X-ray crystallography. Spectroscopic methods confirm the formation of the metal complex, while X-ray crystallography establishes the molecular and crystal structure of the obtained compound. The Cu(II) complex of salicylic acid (complex molecule) is a symmetric binuclear compound in the form of a “Chinese lantern” and contains 4 salicylic acid and 2 water molecules. It interacts with uncoordinated piracetam through a complicated system of hydrogen bonds. However, according to Hirshfeld surface analysis, the contribution of the O•••H/H•••O contacts is only 24.9%, while H•••H and H•••C/C•••H contacts account for 67.5%, indicating that intermolecular interactions are mainly hydrophobic. In silico (molecular docking) studies of the cocrystal, the complex molecule, and piracetam’s antifungal, antibacterial, and antiviral activities confirm that the complex molecule demonstrates enhanced biological activities; practically, the inactive piracetam improved all tested types of bioactivities through cocrystal formation. For example, the binding energy in the case of anti-COVID activity is improved from −10.34 to −11.40 kcal/mol. Thus, cocrystal formation based on metal complexes and inactive organic compounds may be promising in drug design.

Keywords: Salicylic acid, piracetam, Cu(II) complex, quantum-mechanical calculations, biological activity

1. Introduction

Cocrystals, formed between an active pharmaceutical ingredient (API) and a cocrystal former (or conformer), are attracting increasing interest within the pharmaceutical community as promising alternatives for solid drug formation. To date, scientists have synthesized various types of uncommon cocrystals containing metal complexes as crystal formers and APIs [13]. These cocrystals offer enhancements to various pharmaceutically relevant properties compared to single-component crystals, including improvement of solubility, dissolution rate, hydration stability, fluorescence performance, and bioavailability [4]. The interaction between the API and the cocrystal former occurs via nonionic and noncovalent intermolecular interactions, such as van der Waals forces and hydrogen bonding. Therefore, the presence of unused hydrogen bond donor and acceptor sites is crucial for cocrystal formation [5,6].

Salicylic acid is utilized across various fields, including agriculture, cosmetics, and emerging pharmaceuticals, due to its diverse biological properties. It is widely recognized as a crucial signaling molecule in regulating plant responses to environmental stress [713]. A literature survey reveals that numerous metal complexes formed with APIs have demonstrated greater efficacy in treating diseases compared to the original ligands alone [14,15].

Piracetam, also known as 2-oxo-pyrrolidineacetamide, is a nootropic drug widely used in the treatment of age-related cognitive decline and various nervous system disorders such as Alzheimer’s disease and dementia [1618]. In the case of Cu(II) salts, salicylic acid tends to form binuclear tetrasalicylate metal complexes [19]. Due to the four uncoordinated hydroxy groups of the complex molecule, it can easily form cocrystals with APIs, such as piracetam. With its dual amide moieties, piracetam provides an appropriate model of a pharmaceutical compound for exploring cocrystal formation. It is of great interest to estimate the biological action of the complex molecule with salicylic acid, its cocrystal with piracetam, and piracetam itself. In this work, we synthesized a cocrystal based on salicylic acid and piracetam, determined its structure, and compared its antimicrobial and antiviral activities using an in silico (molecular docking) approach.

2. Materials and methods

All the used chemicals were obtained from Sigma-Aldrich (St. Louis, MO, USA) and used as received. The elemental percent compositions of compounds were determined with an elemental analyzer (CHNS/O, Unicube, Elementar, Jeddah, Saudi Arabia) using the Dumas method. Fourier transform infrared (FTIR) spectra were recorded on an IRTracer-100 FTIR spectrophotometer (Shimadzu, Tokyo, Japan) in the range of 4000–400 cm−1 with recording accuracy of 1 cm−1. Spectral data were processed using LabSolution IR software (Shimadzu). Electronic transitions in the compound were investigated using UV spectrophotometry (Cary 5000 UV-Vis-NIR, Agilent Technologies, Santa Clara, CA, USA) in the wavelength range of 200–1100 nm.

2.1. X-ray crystallography

Reflection sets for X-ray diffraction experiments were obtained at 293 K on an XtaLAB Synergy HyPix3000 diffractometer (Rigaku, Tokyo, Japan; microfocus sealed X-ray tube, single source at home/near, PhotonJet (Cu (λ = 1.54184 Å), X-ray source mirror monochromator, detector resolution of 100,000 pixels mm−1, ω-scans). Experimental data were collected using the CrysAlisPro program [20]. Absorption correction was applied by the multiscan method using the same program. The structure was solved by direct method using the SHELXT program package [21] and refined by full-matrix least squares using the SHELXL program [22]. All nonhydrogen atoms were refined anisotropically. Molecular drawings were plotted with the MERCURY program package [23]. The crystallographic data and details of the structural refinement are given in Table 1. Crystallographic data were deposited in the Cambridge Crystallographic Data Centre (Deposition Number: 2344454).

Table 1.

Crystal data and structural refinement of the cocrystal.

CCDC 2344454
Empirical formula C8.50H8.50Cu0.50 N0.50O4
Moiety formula 0.25(C28H24Cu2O14),0.25(C6H10N2O2)
Formula weight 213.43
Temperature (K) 293(2)
Radiation type CuKα (1.54184 Å)
Crystal system Triclinic
Space group P-1
a, b, c (Å) 10.4249(1), 10.5644(1), 17.3440(2)
α, β, γ (°) 98.995(1), 97.220(1), 91.423(1)
Volume (Å3) 1869.76(3)
Z 8
Density (calculated) (Mg/m3) 1.516
Absorption coefficient (mm−1) 2.057
F(000) 876
Crystal size (mm3) 0.140 x 0.120 x 0.110
Theta range for data collection 2.5970 to 71.4480°
Index ranges −12 ≤ h ≤ 11, −12 ≤ k ≤ 12, −20 ≤ l ≤ 21
Reflections collected 7172
Independent reflections 5915 [R(int) = 0.0303]
Data/restraints/parameters 7172 / 1 / 496
Goodness-of-fit on F2 1.098
Absorption correction multiscan
Max. and min. transmission 0.762 and 1.000
Refinement method Full-matrix least-squares on F2
Final R indices [I>2sigma(I)] R1 = 0.0350, wR2 = 0.0938
R indices (all data) R1 = 0.0432, wR2 = 0.1014
Extinction coefficient 0.00080(9)
Largest diff. peak and hole (e.Å−3) 0.349 and −0.351

2.2. Synthesis

2-Hydroxybenzoic acid (0.276 g, 2 mmol) was dissolved completely in 30 mL of ethanol by stirring. Subsequently, a solution of 0.142 g (1 mmol) of 2-oxo-1-pyrrolidine acetamide in 10 mL of ethanol was poured into the previous solution and thoroughly mixed. The resulting solution was then slowly added to a solution of 0.2 g (1 mmol) of copper acetate monohydrate in 20 mL of water while stirring. The resulting solution was placed in a thermostat at a constant temperature of 22 °C. After 11 days, green crystals were formed with a yield of 72% (0.31 mg). Elemental analysis for C34H34Cu2O16N2 (854 g/mol; Calcd: C 47.77%; O 30.0%; H 4.0%; N 3.28%; Found: C 45.83%; O 28.96%; H 4.2%; N 3.32%).

3. Results and discussion

3.1. FTIR spectra

In Figure 1, the vibrational spectrum of functional groups and chemical bonds within the composition of the copper coordination compound under the influence of infrared light is illustrated. This analysis revealed valence (ν) and deformation (δ) vibrations present in the functional groups and chemical bonds of the compound.

Figure 1.

Figure 1

Infrared spectrum of the cocrystal.

In the IR spectroscopic range spanning from 3500 cm−1 to 2800 cm−1, several weak peaks exhibited broadening due to light absorption, indicating average intensity. Notably, the absorption peak at 3222 cm−1 corresponded to the valence vibrations of the −OH group, participating in both intermolecular and intramolecular hydrogen bonding.

The asymmetric valence vibrations of the carboxyl group within salicylic acid in the compound displayed strong intensity in the νas region at 1597 cm−1. Additionally, symmetric valence vibrations were observed in the νs region at 1382 cm−1as – νs = 215 > 200). These observations indicated that the oxygen atoms of the carboxyl group within the compound were coordinated in a monodentate fashion to the metal. Moreover, strong infrared light absorption was observed at 1456 cm−1 in the valence vibrations of the aromatic ring [24,25].

Within the lower range of the IR spectra, absorptions of relatively strong intensity were observed. In this spectral region, various vibrations corresponding to the bonds formed between copper metal and the ligands were identified. Specifically, at 667 cm−1, the donor–acceptor bond between water and the metal was observed, while vibrations associated with the bonds between the carboxyl group and the metal were recorded at 607 cm−1 and 432 cm−1, respectively [26].

3.2. UV-Vis spectra

Based on the spectra (Figures 2a and 2b), it was determined that the salicylate ligands within the metal complex act as electron donors and are involved in ligand-to-metal charge transfer processes. These transitions occur when electrons move from the ligand orbitals to the high-energy copper d-orbitals (t2g→eg). Consequently, absorption maxima were observed at longer wavelengths of electromagnetic radiation, specifically at λmax = 770 nm (12,987 cm−1) [27].

Figure 2.

Figure 2

a, b) UV spectra of the cocrystal.

Furthermore, within the wavelength range of λmax = 297 nm (33,670 cm−1) used in the spectrophotometric analysis, metal-to-ligand charge transfer phenomena were observed in the molecule. This process involves transitions to energetically favorable orbitals.

Similarly, within the region of λmax = 201 nm (49,751 cm−1), corresponding to shorter wavelengths, n→p* transitions of the carbonyl group within the salicylate ligand were observed.

3.3. X-ray crystallography

The crystal data and details of data collection and refinement are summarized in Table 1. The asymmetric part of the unit cell consists of three fragments (Figure 3a). They are halves of the two complex molecules and one piracetam (2-(2-oxopyrrolidin-1-yl)acetamide) molecule because complex molecules are located on inversion centers while the uncoordinated piracetam molecule occupies the total position of the unit cell (Figure 3b). Both complex molecules are in the form of a “Chinese lantern,” in which symmetry centers are located between the Cu(II) ions. The dimeric Cu1 and Cu2 ions of independent complex molecules I and II chelate four salicylic acid molecules through oxygen atoms of the carboxylate group and coordinate two water molecules. Oxygen atoms O2, O3, O5, and O6 of molecule I (atoms O8, O9, O11, and O12 for molecule II) are in equatorial positions while oxygen atom O15 (O16 for molecule II) of the water molecule occupies an axial position [28]. Bond lengths of equatorial atoms are in the range of 1.954–1.984 Å, whereas bond distances of axial atoms are 2.120 and 2.106 Å due to Janh–Teller effect. The selected bond lengths, angles, and torsion angles are listed in Tables S1, S2, and S3, respectively. The intermetallic distances of the dimers are 2.643 and 2.621 Å, which are close to the distance in the previously reported copper(II) complex [29]. Orthogonal bond angles vary from 88.09(7)° to 98.74(7)°. Therefore, the coordination polyhedrons of metal atoms are distorted square pyramids. The bond length distortion index is 0.02465 and the effective coordination number is 4.8399. The stereoscopic view of the coordinate polyhedron (Figure 4) and polyhedral geometric parameters are given below (Table 2).

Figure 3.

Figure 3

Asymmetry unit (a) and ORTEP structure (b) of the cocrystal (hydrogen atoms are omitted for clarity and the thermal ellipsoids are drawn at the 30% probability level).

Figure 4.

Figure 4

Stereoscopic view of the coordination polyhedron in the cocrystal.

Table 2.

Polyhedral geometric parameters for Cu(1) and Cu(2).

Bond Distances (Å) Bond Distances (Å)
Cu(1)-O(6) 1.9719(19) Cu(2)-O(8) 1.9539(18)
Cu(1)-O(15) 2.1204(17) Cu(2)-O(16) 2.1060(19)
Cu(1)-O(2) 1.9723(19) Cu(2)-O(11) 1.9660(19)
Cu(1)-O(3) 1.9682(18) Cu(2)-O(12) 1.9845(17)
Cu(1)-O(5) 1.9535(18) Cu(2)-O(9) 1.9745(17)
Average bond length (Å) 1.9973 1.9970
Polyhedral volume (Å3) 5.9283 5.8781
Distortion index (bond length) 0.02465 0.02185
Effective coordination number 4.8399 4.8687

The hydrogen bonds are listed in Table 3. Hydrogen bonding and weak van der Waals interactions mainly construct a supramolecular architecture. The salicylic acid ligand hydroxyl group makes short intramolecular hydrogen bonds with a distance of 1.822 Å [H(1)•••O(2)]. The 2-(2-oxopyrrolidin-1-yl)acetamide molecule amino group bridged with the two crystallographically independent molecules via N-H•••O hydrogen bonds and the corresponding distances are 3.049(3) Å (N(2)•••O(3)) for the Cu1 molecule and 3.006(3) Å (N(2)•••O(10)) for the Cu2 molecule (Figure 5a).

Table 3.

Geometric details of hydrogen bonding [Å and °] in the cocrystal.

D-H•••A d(D-H) d(H•••A) d(D•••A) <(DHA)
N(2)-H(2A)•••O(3) 0.86 2.201 3.049(3) 169
N(2)-H(2B)•••O(10) 0.86 2.188 3.006(3) 158.9
O(1)-H(1)•••O(2) 0.82 1.822 2.538(3) 145.1
O(4)-H(4)•••O(6) 0.82 1.920 2.626(3) 143.7
O(7)-H(7)•••O(9) 0.82 1.897 2.597(3) 142.6
O(10)-H(10)•••O(12) 0.82 1.861 2.574(2) 144.7
O(15)-H(15A)•••O(14) 0.853 1.940 2.722(3) 152
O(15)-H(15B)•••O(13) 0.853 2.019 2.827(3) 157.7
O(16)-H(16A)•••O(13) 0.85 1.929 2.770(3) 169.9
O(16)-H(16B)•••O(1) 0.85 2.012 2.833(3) 162

Symmetry transformations used to generate equivalent atoms: 1-x,-y,1-z, 1-x,1-y,-z, 1-x,1-y,1-z

Figure 5.

Figure 5

Molecular packing interactions of the O-H•••O (a, b) and π•••π (c) type (most hydrogens are omitted for clarity).

The Cu1 coordinated water molecules bridged via O-H•••O hydrogen bonds with the nearest two 2-oxopyrrolidin-1-yl)acetamide molecules and the distances are 2.827(3) and 2.722(3) Å for O(15)•••O(13) and O(15)•••O(14), respectively. The Cu2 coordinated water molecules are bridged via O-H•••O hydrogen bonds with 2-oxopyrrolidin-1-yl)acetamide and the Cu1 complex molecule with the distances of 2.770(3) Å (O(16)•••O(13)) and 2.833(3) Å (O(16)•••O(1)) (Figure 5b). The centroid–centroid contact distance is ~3.87 Å with an angle of 20.98°. The stacking arrangement resembles slipped packing with a ring horizontal displacement ranging from 1.370 Å to 1.401 Å and the plane–plane distance is 3.678 Å (Figure 5c).

3.4. Hirshfeld surface analysis

Examinations of intermolecular interactions in crystals become quantitative with Hirshfield surface analysis. This method reveals how close neighboring atoms are on both the internal (di) and external (de) surfaces surrounding each point on the Hirshfield surface. These unique features have proven valuable in understanding the selectivity and specificity of intermolecular forces that influence how molecules pack together.

Generating these surfaces involves dividing the crystal’s space using the Hirshfield ratio. This ratio defines the procrystal, essentially a blueprint for the crystal structure, based on a promolecule with electron density of 0.5. The normalized contact distance, represented by dnorm, is calculated by considering both internal and external perspectives relative to the surface, as the following equation demonstrates:

dnorm=di-rivdWrivdW+de-revdWrevdW

Here, de represents the distance from the surface to the closest nucleus outside, while di signifies the distance to the nearest one inside. rvdW stands for the van der Waals radius of the specific atom.

These distances contribute to the informative dnorm parameter, visualized as a color gradient surface of red to white to blue. Red areas depict intermolecular contacts happening closer than their van der Waals radii, highlighting close interactions. Conversely, blue regions indicate contacts exceeding those radii, signifying a larger gap between molecules. White areas represent the combined van der Waals radii of the involved atoms.

To calculate short-range contacts within the crystal lattice, Crystal Explorer version 21.5 was employed [30]. This software was also used to analyze the crystal structures of Hirshfield surfaces and generate the corresponding two-dimensional (2D) fingerprint plots [31].

In our research, we investigated the arrangement of one molecule of piracetam positioned between two molecules of a binuclear coordination compound consisting of copper metal and salicylic acid. This arrangement played a role in the overall surface formation to some extent. It is worth noting that the piracetam molecule remained neutral, similar to rare cocrystals. This finding aligns with the observations made by Ruzmetov et al. [32].

To comprehensively capture the interactions within the molecular crystals, we utilized the entire compound molecule for the calculation of the Hirshfeld surface. The primary objective was to provide a comprehensive representation of the molecular interactions. The Hirshfeld surface of the compound was mapped by calculating the normalized contact distance dnorm and the resulting surface was visualized using indicator colors such as red, white, and blue. The obtained results revealed a range of recorded interactions in molecular crystals, spanning atomic sizes from −0.6259 (indicated by red) to 2.0808 (indicated by blue).

The total Hirshfeld surface area was determined to be 1665.66 Å2, with a specific surface area of 1132.36 Å2. Notably, the interactions within the molecular crystals prominently involved oxygen atoms, as illustrated in Figure 6.

Figure 6.

Figure 6

The Hirshfeld surface of the cocrystal.

Analysis of the 2D fingerprint plot of the compound’s Hirshfeld surface (Figure 7) revealed the dominance of hydrogen–hydrogen (H•••H) interactions, contributing approximately 47% of the overall surface. Notably, these interactions play a crucial role in crystal packing. Additionally, significant contributions are observed from O•••H/H•••O interactions (24.9%), primarily involving oxygen atoms acting as hydrogen bond acceptors and donors. These interactions further enhance the stability of the crystal structure. Additionally, hydrogen–carbon interactions (H•••C/C•••H) account for 20.5% of the surface formation. Interactions involving carbon atoms (C•••C) and oxygen–carbon contacts (O•••C/C•••O) play a minor role (4.5% and 2.5%, respectively). Interestingly, the fingerprint plot reveals minimal contributions from hydrogen–nitrogen interactions (H•••N/N•••H, 0.6%) and oxygen–oxygen interactions (O•••O, 0.1%).

Figure 7.

Figure 7

The 2D fingerprint plot of the cocrystal.

The analysis of the Hirshfeld surfaces of a chemical compound incorporated several indicators, namely di, de, shape index, curvedness, and fragment patches (Figure 8). It is noteworthy that di ranged from 0.7246 to 3.2227, while de ranged from 0.7668 to 3.3372. The observation that di < de suggests a higher electron density within the Hirshfeld surface of the crystal.

Figure 8.

Figure 8

Important parameters of the Hirshfeld surfaces: di, de, shape index, curvature, and fragment patch.

Additionally, the shape index exhibited values ranging from −0.9995 to 0.9977 in terms of atomic dimensions. It is important to highlight that the shape index revealed a distance of 2.074 Å between the C3 and C23 atoms, indicating that the aromatic ring in the molecule is positioned opposite the generalized p orbital. This arrangement leads to π–π coverage between the opposing C atoms.

The curvedness values ranged between −4.104 and 0.866. A high negative value denotes significant concavity and nonconvexity on the Hirshfeld surface, whereas a positive value signifies a moderately convex region. In other words, a positive value indicates that the surface protrudes slightly outward.

3.5. Molecular docking

Molecular docking studies were conducted to assess the potential antifungal, antibacterial, and antiviral activities of the investigated compounds in interaction with proteins of microorganisms and viruses [33,34]. The 3D geometry of the cocrystal was taken from the cif-file of the compound, whereas the 3D geometry of the piracetam was prepared using Avogadro software [35]. The structures of proteins tLeuRS (PDB ID: 2V0C), E. coli gyrase B (PDB ID: 6F86), C. albicans (PDB ID: 2QZX), and the main protease (Mpro) of SARS-CoV-19 (PDB ID: 6LU7) were obtained from the PDB database [36] as pdb files and their structures were cleaned of additional molecules using the Biovia DS visualizer program (Dassault Systèmes, Vélizy-Villacoublay, France). The structures of compounds 13 (Figures 9a–9c) and cleaned proteins were converted to pdbqt files in the AutoDockTools-1.5.7 program package and these pdbqt files were used for molecular docking studies with the AutoDock 4.2 program [37]. Previously used active sites (x-, y-, and z-centers of the active sites) of proteins [38,39] were selected for molecular docking studies in this work. The molecular docking results were visualized with the Biovia DS visualizer program [40].

Figure 9.

Figure 9

a–c) Structures of the compounds for molecular docking studies.

Compound 1 was designed as a hydrogen bonding system and its structural integrity was maintained throughout the molecular docking studies. In all cases, the binding energy of compound 1 was found to be optimal compared to that of compounds 2 and 3 (Table 4). The highest binding energy for compound 1 was observed while determining its antiviral activity, with a value of BE = −11.40 kcal/mol. Compound 2 also exhibited relatively good results against SARS-CoV-2 Mpro, with binding energy of −10.34 kcal/mol, indicating its potential efficacy (Table 3). The compounds fit well in the active site of the protein. In Figure 10a and Figure 10b, the localization of 2 in the active site is illustrated, along with its interaction with amino acid residues through H-bonds.

Table 4.

Binding energies of the compounds.

Compound Receptor (PDB ID) Binding energy (BE), kcal/mol H-bond contacting residues
1 tLeuRS (2V0C) −9.26 THR247, THR248, ARG249, GLN296, LEU329, ARG346
2 tLeuRS (2V0C) −8.87 GLU292, ARG295, GLN296, TYR327, LEU329
3 tLeuRS (2V0C) −5.57 LYS290, GLU294, ARG295, ARG300, THR303
1 E.Coli (6F86) −8.41 ASN46, VAL120
2 E.Coli (6F86) −8.30 GLU42, ASP49, ILE94, SER121
3 E.Coli (6F86) −4.76 ASP73, THR165, VAL167
1 C.Albicans (2QZX) −8.89 LYS83, TYR84, GLY85, ASP303
2 C.Albicans (2QZX) −8.37 ASP86, ARG299
3 C.Albicans (2QZX) −5.28 THR33, PHE128, LEU194
1 Mpro (6LU7) −11.40 ASN142, GLY143, HIS164, GLU166
2 Mpro (6LU7) −10.34 LEU141, ASN142, SER144, CYS145, HIS164, GLN189
3 Mpro (6LU7) −4.63 GLY143, SER144, HIS163

Figure 10.

Figure 10

Compound 2 in the active site of protein 6LU7 (a) and its interactions by H-bonds (b).

The receptor protein tLeuRS (PDB ID: 2V0C) was previously used by Zhang and colleagues [41,42] in antifungal studies of some selected compounds. Interactions between compounds 13 and this protein were evaluated to assess their potential antifungal activity. The binding energy of compound 1 (−9.26 kcal/mol) suggests potential for exhibiting antifungal activity. Hydroxyl groups and water molecules of compound 2 can act as H-bond donors and they may interact with H-bond acceptors, such as carbonyl groups (C=O) found in amino acid residues (Figures 11a and 11b).

Figure 11a.

Figure 11a

Compound 2 in the active site of protein 2V0C (a) and its interactions with H-bonds (b).

4. Conclusion

The cocrystal of the Cu(II) complex of salicylic acid and piracetam has been synthesized and structurally characterized. The binuclear Cu(II) complex of salicylic acid (metal complex), which adopts a “Chinese lantern” structure, interacts with uncoordinated piracetam through a complicated system of hydrogen bonds. In silico (molecular docking) studies of the cocrystal, the metal complex, and piracetam’s biological actions were conducted using AutoDock 4.2. These research results indicated that the metal complex exhibits enhanced antifungal, antibacterial, and antiviral activities. Although piracetam is practically inactive on its own, it enhances all tested bioactivities when the cocrystal is formed with the Cu(II) complex of salicylic acid, improving the binding energy from −10.34 to −11.40 kcal/mol. Therefore, the formation of cocrystals based on metal complexes and inactive organic compounds may hold promise in drug design.

Data availability

Data availability is not applicable to this study.

Supplementary Information

Table S1.

Selected bond lengths [Å] for the cocrystal.

Bond Length [Å] Bond Length [Å] Bond Length [Å]
Cu2-Cu2 2.6208(6) N1-C32 1.335(3) C1-C6 1.394(4)
Cu2-O12 1.9845(16) N1-C33 1.446(3) C34-C33 1.516(3)
Cu2-O11 1.9659(16) N1-C29 1.461(3) C2-C3 1.385(4)
Cu2-O9 1.9744(17) O1-C2 1.356(3) C16-C17 1.390(4)
Cu2-O8 1.9539(17) O10-C23 1.349(3) C23-C24 1.397(4)
Cu2-O16 2.1062(17) O7-C16 1.343(4) C9-C10 1.391(4)
Cu1-Cu1 2.6428(6) O14-C34 1.225(3) C31-C30 1.496(5)
Cu1-O3 1.9682(16) O4-C9 1.363(4) C6-C5 1.382(4)
Cu1-O2 1.9722(16) N2-C34 1.319(3) C20-C19 1.373(4)
Cu1-O6 1.9719(17) C7-C1 1.477(3) C27-C26 1.381(4)
Cu1-O15 2.1203(17) C28-C22 1.478(3) C13-C12 1.384(4)
Cu1-O5 1.9536(16) C8-C14 1.480(3) C29-C30 1.519(5)
O12-C28 1.274(3) C8-C9 1.390(4) C10-C11 1.359(5)
O3-C7 1.260(3) C8-C13 1.373(4) C24-C25 1.369(5)
O11-C28 1.261(3) C21-C15 1.482(3) C3-C4 1.373(5)
O2-C7 1.272(3) C22-C23 1.407(3) C26-C25 1.389(5)
O6-C14 1.277(3) C22-C27 1.390(3) C5-C4 1.374(5)
O9-C21 1.271(3) C32-C31 1.499(4) C17-C18 1.349(5)
O8-C21 1.260(3) C15-C16 1.405(4) C18-C19 1.393(5)
O5-C14 1.254(3) C15-C20 1.388(4) C11-C12 1.364(5)
O13-C32 1.235(3) C1-C2 1.400(4)

Symmetry transformations used to generate equivalent atoms.

Table S2.

Selected bond angles [°] for the cocrystal.

Bond Angle [°] Bond Angle [°] Bond Angle [°]
O12-Cu2-Cu2 84.31(5) C21-O9-Cu2 123.11(16) N2-C34-C33 117.8(2)
O12-Cu2-O16 92.18(7) C21-O8-Cu2 123.64(16) N1-C33-C34 116.4(2)
O11-Cu2-Cu2 84.51(5) C14-O5-Cu1 127.46(16) O1-C2-C1 122.6(2)
O11-Cu2-O12 168.79(7) C32-N1-C33 124.6(2) O1-C2-C3 117.3(3)
O11-Cu2-O9 90.70(7) C32-N1-C29 113.5(2) C3-C2-C1 120.0(3)
O11-Cu2-O16 99.00(7) C33-N1-C29 121.6(2) O7-C16-C15 123.2(2)
O9-Cu2-Cu2 84.08(5) O3-C7-O2 123.6(2) O7-C16-C17 117.7(3)
O9-Cu2-O12 88.93(7) O3-C7-C1 119.3(2) C17-C16-C15 119.0(3)
O9-Cu2-O16 96.13(9) O2-C7-C1 117.1(2) O10-C23-C22 122.6(2)
O8-Cu2-Cu2 84.71(5) O12-C28-C22 118.1(2) O10-C23-C24 118.0(2)
O8-Cu2-O12 89.29(7) O11-C28-O12 123.8(2) C24-C23-C22 119.4(3)
O8-Cu2-O11 88.91(8) O11-C28-C22 118.1(2) O4-C9-C8 123.3(2)
O8-Cu2-O9 168.76(7) C9-C8-C14 122.8(2) O4-C9-C10 117.2(3)
O8-Cu2-O16 95.03(9) C13-C8-C14 118.4(2) C8-C9-C10 119.5(3)
O16-Cu2-Cu2 176.49(6) C13-C8-C9 118.7(2) C30-C31-C32 104.3(2)
O3-Cu1-Cu1 88.46(5) O6-C14-C8 118.2(2) C5-C6-C1 120.1(3)
O3-Cu1-O2 167.95(7) O5-C14-O6 123.9(2) C19-C20-C15 121.3(3)
O3-Cu1-O6 88.09(7) O5-C14-C8 117.9(2) C26-C27-C22 121.5(3)
O3-Cu1-O15 98.74(7) O9-C21-C15 118.0(2) C8-C13-C12 121.6(3)
O2-Cu1-Cu1 79.51(5) O8-C21-O9 124.3(2) N1-C29-C30 103.0(2)
O2-Cu1-O15 93.31(7) O8-C21-C15 117.7(2) C11-C10-C9 120.1(3)
O6-Cu1-Cu1 86.49(5) C23-C22-C28 121.4(2) C25-C24-C23 120.4(3)
O6-Cu1-O2 90.45(8) C27-C22-C28 119.8(2) C4-C3-C2 119.5(3)
O6-Cu1-O15 95.99(7) C27-C22-C23 118.7(2) C27-C26-C25 119.0(3)
O15-Cu1-Cu1 172.44(6) O13-C32-N1 124.2(2) C4-C5-C6 119.7(3)
O5-Cu1-Cu1 81.49(5) O13-C32-C31 126.9(2) C18-C17-C16 121.0(3)
O5-Cu1-O3 89.64(8) N1-C32-C31 108.9(2) C24-C25-C26 120.9(3)
O5-Cu1-O2 89.28(8) C16-C15-C21 121.8(2) C3-C4-C5 121.4(3)
O5-Cu1-O6 167.81(7) C20-C15-C21 119.3(2) C17-C18-C19 120.8(3)
O5-Cu1-O15 96.18(7) C20-C15-C16 118.8(2) C20-C19-C18 119.0(3)
C28-O12-Cu2 123.16(15) C2-C1-C7 121.0(2) C10-C11-C12 121.3(3)
C7-O3-Cu1 119.15(15) C6-C1-C7 119.8(2) C11-C12-C13 118.7(3)
C28-O11-Cu2 124.22(15) C6-C1-C2 119.2(2) C31-C30-C29 105.8(3)
C7-O2-Cu1 129.26(16) O14-C34-N2 124.1(2)
C14-O6-Cu1 120.22(16) O14-C34-C33 118.1(2)

Symmetry transformations used to generate equivalent atoms.

Table S3.

Torsion angles [°] for the cocrystal.

Dihedral bond Angle [°] Dihedral bond Angle [°]
Cu2-O12-C28-O11 −2.1(3) C14-C8-C9-O4 −3.1(4)
Cu2-O12-C28-C22 178.03(14) C14-C8-C9-C10 176.1(3)
Cu2-O11-C28-O12 1.1(3) C14-C8-C13-C12 −176.4(3)
Cu2-O11-C28-C22 −179.10(14) C21-C15-C16-O7 −2.0(4)
Cu2-O9-C21-O8 4.5(3) C21-C15-C16-C17 178.9(3)
Cu2-O9-C21-C15 −174.38(15) C21-C15-C20-C19 −179.0(3)
Cu2-O8-C21-O9 −5.5(3) C22-C23-C24-C25 2.0(4)
Cu2-O8-C21-C15 173.39(15) C22-C27-C26-C25 2.5(5)
Cu1-O3-C7-O2 −0.9(3) C32-N1-C33-C34 93.0(3)
Cu1-O3-C7-C1 178.50(15) C32-N1-C29-C30 −11.5(4)
Cu1-O2-C7-O3 2.1(4) C32-C31-C30-C29 −20.5(4)
Cu1-O2-C7-C1 −177.34(15) C15-C16-C17-C18 0.1(5)
Cu1-O6-C14-O5 5.6(3) C15-C20-C19-C18 0.1(6)
Cu1-O6-C14-C8 −172.56(16) C1-C2-C3-C4 1.3(4)
Cu1-O5-C14-O6 −8.9(4) C1-C6-C5-C4 0.5(5)
Cu1-O5-C14-C8 169.26(16) C33-N1-C32-O13 −7.3(4)
O12-C28-C22-C23 6.7(3) C33-N1-C32-C31 171.6(2)
O12-C28-C22-C27 −171.6(2) C33-N1-C29-C30 175.2(3)
O3-C7-C1-C2 −170.2(2) C2-C1-C6-C5 1.2(4)
O3-C7-C1-C6 9.6(3) C2-C3-C4-C5 0.4(5)
O11-C28-C22-C23 −173.2(2) C16-C15-C20-C19 −0.4(5)
O11-C28-C22-C27 8.5(3) C16-C17-C18-C19 −0.4(7)
O2-C7-C1-C2 9.3(3) C23-C22-C27-C26 −0.3(4)
O2-C7-C1-C6 −171.0(2) C23-C24-C25-C26 0.2(5)
O9-C21-C15-C16 0.0(4) C9-C8-C14-O6 −0.8(4)
O9-C21-C15-C20 178.5(2) C9-C8-C14-O5 −179.1(2)
O8-C21-C15-C16 −179.0(2) C9-C8-C13-C12 1.6(5)
O8-C21-C15-C20 −0.5(4) C9-C10-C11-C12 −2.0(7)
O13-C32-C31-C30 −167.1(3) C6-C1-C2-O1 176.6(2)
N1-C32-C31-C30 14.0(4) C6-C1-C2-C3 −2.1(4)
N1-C29-C30-C31 19.5(4) C6-C5-C4-C3 −1.3(6)
O1-C2-C3-C4 −177.4(3) C20-C15-C16-O7 179.5(3)
O10-C23-C24-C25 −178.0(3) C20-C15-C16-C17 0.4(4)
O7-C16-C17-C18 −179.1(3) C27-C22-C23-O10 178.1(2)
O14-C34-C33-N1 160.0(2) C27-C22-C23-C24 −1.9(4)
O4-C9-C10-C11 −178.7(3) C27-C26-C25-C24 −2.5(6)
N2-C34-C33-N1 −21.9(4) C13-C8-C14-O6 177.2(2)
C7-C1-C2-O1 −3.6(4) C13-C8-C14-O5 −1.1(4)
C7-C1-C2-C3 177.7(2) C13-C8-C9-O4 179.0(3)
C7-C1-C6-C5 −178.6(3) C13-C8-C9-C10 −1.8(4)
C28-C22-C23-O10 −0.3(4) C29-N1-C32-O13 179.6(3)
C28-C22-C23-C24 179.7(2) C29-N1-C32-C31 −1.4(3)
C28-C22-C27-C26 178.0(3) C29-N1-C33-C34 −94.5(3)
C8-C9-C10-C11 2.0(5) C10-C11-C12-C13 1.8(7)
C8-C13-C12-C11 −1.6(6) C17-C18-C19-C20 0.4(7)

Symmetry transformations used to generate equivalent atoms.

Acknowledgment

The authors gratefully acknowledge the Ministry of Higher Education, Science, and Innovation of Uzbekistan for financial support (Project Number F3-20200929348).

Funding Statement

Financial support was received from the Ministry of Higher Education, Science, and Innovation of Uzbekistan (Project Number F3-20200929348).

Footnotes

Informed consent statement: Informed consent was not applicable to this study.

Ethical approval statement: Ethical approval was not applicable to this study.

Conflicts of interest: The authors declare no conflict of interest.

Funding: Financial support was received from the Ministry of Higher Education, Science, and Innovation of Uzbekistan (Project Number F3-20200929348).

References

  • 1. Buvaylo EA, Kokozay VN, Rubini KV, Olga Y, Skelton BW. Unusual cocrystals made of a Schiff base metal complex and an organic molecule-Close-packing vs. hydrogen bond interactions. Journal of Molecular Structure. 2014;1072:129–136. doi: 10.1016/j.molstruc.2014.04.082. [DOI] [Google Scholar]
  • 2. Gao XS, Dai HJ, Tang Y, Ding MJ, Pei WB, et al. Crystal structures, Photoluminescence, and Magnetism of two novel transition-metal complex cocrystals with three-dimensional H-bonding organic framework or alternating noncovalent anionic and cationic layers. ACS Omega. 2019;4(71):2230–12237. doi: 10.1021/acsomega.9b01584. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 3. Golbedaghi R, Rui F. Coordination aspects in Schiff bases cocrystals. Polyhedron. 2018;155:1–12. doi: 10.1016/j.poly.2018.06.049. [DOI] [Google Scholar]
  • 4. Ouyang J, Liu L, Li Y, Chen M, Zhou L, et al. Cocrystals of carbamazepine: structure, mechanical properties, fluorescence properties, solubility, and dissolution rate. Particuology. 2024;90:20–30. doi: 10.1016/j.partic.2023.11.016. [DOI] [Google Scholar]
  • 5. Du Y, Xia Y, Zhang H, Hong Z. Using terahertz time-domain spectroscopical technique to monitor cocrystal formation between piracetam and 2,5-dihydroxybenzoic acid. Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy. 2013;111:192–195. doi: 10.1016/j.saa.2013.03.081. [DOI] [PubMed] [Google Scholar]
  • 6. Springuel G, Norberg B, Robeyns K, Wouters J, Leyssens T. Advances in pharmaceutical co-crystal screening: effective co-crystal screening through structural resemblance. Crystal Growth & Design. 2012;12(1):475–484. doi: 10.1021/cg201291k. [DOI] [Google Scholar]
  • 7. Mishra S, Roychowdhury R, Ray S, Hada A, Kumar A, et al. Salicylic acid (SA)-mediated plant immunity against biotic stresses: an insight on molecular components and signaling mechanism. Plant Stress. 2024:100427. doi: 10.1016/j.stress.2024.100427. [DOI] [Google Scholar]
  • 8. Weder JE, Dillon CT, Hambley TW, Kennedy BJ, Lay PA, et al. Copper complexes of non-steroidal anti-inflammatory drugs: an opportunity yet to be realized. Coordination Chemistry Reviews. 2002;232(1–2):95–126. doi: 10.1016/S0010-8545(02)00086-3. [DOI] [Google Scholar]
  • 9. Gissawon N, Supalax S, Sira S. A simple capture-release strategy based on an instantly formed mixed metal hydroxide sorbent for determination of salicylic acid in cosmetics. Sustainable Chemistry and Pharmacy. 2019;13:100154. doi: 10.1016/j.scp.2019.100154. [DOI] [Google Scholar]
  • 10. Icbudak H, Olmez H, Yesilel OZ, Arslan F, Naumov P, et al. Syntheses, characterization and crystal structures of novel amine adducts of metal saccharinates, orotates and salicylates. Journal of Molecular Structure. 2003;657(1–3):255–270. doi: 10.1016/S0022-2860(03)00404-6. [DOI] [Google Scholar]
  • 11. Puchoňová M, Mazúr M, Moncol J, Růžičková Z, Valigura D. Dimeric and different polymeric copper (II) salicylates-Crystal structure and spectral properties. Journal of Molecular Structure. 2017;1137:706–713. doi: 10.1016/j.molstruc.2017.02.081. [DOI] [Google Scholar]
  • 12. Choudhary S, Bhat TM, Alwutayd KM, El-Moneim DA, Naaz N. Salicylic acid enhances thermotolerance and antioxidant defense in Trigonella foenum graecum L. under heat stress. Heliyon. 2024;10:6. doi: 10.1016/j.heliyon.2024.e27227. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 13. Ruzmetov A, Ibragimov A. Past, current and future trends of salicylic acid and its derivatives: A bibliometric review of papers from the Scopus database published from 2000 to 2021. ASEAN Journal for Science and Engineering in Materials. 2023;2(1):53–68. [Google Scholar]
  • 14. Rajesh P, Gunasekaran S, Seshadri S, Gnanasambandan T. DFT computational analysis of piracetam. Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy. 2014;132:249–255. doi: 10.1016/j.saa.2014.04.106. [DOI] [PubMed] [Google Scholar]
  • 15. Ruzmetov AK, Ibragimov AB, Myachina OV, Kim RN, Mamasalieva LE, et al. Synthesis, crystal structure, Hirshfeld surface analysis and bioactivity of the Cu mixed-ligand complex with 4-hydroxybenzoic acid and monoehtanolamine. Chemical Data Collections. 2022;38:100845. doi: 10.1016/j.cdc.2022.100845. [DOI] [Google Scholar]
  • 16. Szeleszczuk Ł, Pisklak DM, Gubica T, Matjakowska K, Kaźmierski S, et al. Application of combined solid-state NMR and DFT calculations for the study of piracetam polymorphism. Solid State Nuclear Magnetic Resonance. 2019;97:17–24. doi: 10.1016/j.ssnmr.2018.11.002. [DOI] [PubMed] [Google Scholar]
  • 17. Uniyal A, Singh R, Akhtar A, Bansal Y, Kuhad A, et al. Co-treatment of piracetam with risperidone rescued extinction deficits in experimental paradigms of post-traumatic stress disorder by restoring the physiological alterations in cortex and hippocampus. Pharmacology Biochemistry and Behavior. 2019;185:172763. doi: 10.1016/j.pbb.2019.172763. [DOI] [PubMed] [Google Scholar]
  • 18. Verma DK, Gupta S, Biswas J, Joshi N, Singh A, et al. New therapeutic activity of metabolic enhancer piracetam in treatment of neurodegenerative disease: Participation of caspase independent death factors, oxidative stress, inflammatory responses and apoptosis. Biochimica et Biophysica Acta (BBA)- Molecular Basis of Disease. 2018;1864(6):2078–2096. doi: 10.1016/j.bbadis.2018.03.014. [DOI] [PubMed] [Google Scholar]
  • 19. Ruzmetov A, Ibragimov AB, Yu YA, Shimonishi D, Ibragimov AB, et al. Synthesis, crystal structure and Hirshfeld surface analysis of binuclear Cu (II) complexes from o/p-hydroxybenzoic acid with ethanol and water solution of monoethanolamine. Polyhedron. 2023;242:116491. doi: 10.1016/j.poly.2023.116491. [DOI] [Google Scholar]
  • 20.Rigaku OD. CrysAlis PRO, 2020 Rigaku Oxford Diffraction, Yarnton, England. [Google Scholar]
  • 21. Sheldrick GM. SHELXT-Integrated space-group and crystal-structure determination. Acta Crystallographica Section A: Foundations and Advances. 2015;71(1):3–8. doi: 10.1107/S2053273314026370. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 22. Sheldrick GM. Crystal structure refinement with SHELXL. Acta Crystallographica Section C: Structural Chemistry. 2015;71(1):3–8. doi: 10.1107/S2053229614024218. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 23. Macrae CF, Sovago I, Cottrell SJ, Galek PT, McCabe P, et al. Mercury 4.0: From visualization to analysis, design and prediction. Applied Crystallography. 2020;53(1):226–235. doi: 10.1107/S1600576719014092. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 24. Belkov MV, Skornyakov IV, Tolstorozhev GB, Shadyro OI, Brinkevich SD, et al. Infrared spectra and structure of molecular complexes of aromatic acids; Infrakrasnye spektry i struktura molekulyarnykh kompleksov aromaticheskikh kislot. Zhurnal Prikladnoj Spektroskopii. 2011;78 doi: 10.1007/s10812-012-9535-0. [DOI] [Google Scholar]
  • 25. Belkov MV, Brinkevich SD, Samovich SN, Skornyakov IV, Tolstorozhev GB, et al. Infrared spectra and structure of molecular complexes of aromatic acids. Journal of Applied Spectroscopy. 2012;78:794–801. doi: 10.1007/s10812-012-9535-0. [DOI] [Google Scholar]
  • 26. Marks JH, Timothy BW, Michael AD. Infrared spectroscopy of coordination and solvation in Cu+ (C2H4) n (n= 1–9) complexes. International Journal of Mass Spectrometry. 2019;435:107–113. doi: 10.1016/j.ijms.2018.10.008. [DOI] [Google Scholar]
  • 27. Linert W, Mahmoud N, Abu-Hussen A. Solvatochromism of copper (II) complexes derived from trifluoroacetylacetone and dinitrogen ligands. Archives in Chemical Research. 2019;1(4):1–1. doi: 10.21926/acr.1904001. [DOI] [Google Scholar]
  • 28. Shaban ShY, Ramadan AM, Ibrahim MM, Elshami FI, Eldik R. Square planar versus square pyramidal copper (II) complexes containing N3O moiety: Synthesis, structural characterization, kinetic and catalytic mimicking activity. Inorganica Chimica Acta. 2019;486:608–616. doi: 10.1016/j.ica.2018.11.024. [DOI] [Google Scholar]
  • 29. Rowland JM, Marilyn MO, Pradip KM. Monomeric and dimeric Copper (II) complexes of a novel tripodal peptide ligand: structures stabilized via hydrogen bonding or ligand sharing. Inorganic Chemistry. 2000;39(23):5326–5332. doi: 10.1021/ic000471m. [DOI] [PubMed] [Google Scholar]
  • 30. Spackman PR, Turner MJ, McKinnon JJ, Wolff SK, Grimwood DJ, et al. CrystalExplorer: a program for Hirshfeld surface analysis, visualization and quantitative analysis of molecular crystals. Journal of Applied Crystallography. 2021;54(3):1006–1011. doi: 10.1107/S1600576721002910. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 31. Spackman MA, Jayatilaka D. Hirshfeld surface analysis. CrystEngComm. 2009;11(1):19–32. doi: 10.1039/B818330A. [DOI] [Google Scholar]
  • 32. Ruzmetov A, Ibragimov AB, Yu YA, Shimonishi D, Ibragimov AB, et al. Synthesis, crystal structure and Hirshfeld surface analysis of binuclear Cu (II) complexes from o/p-hydroxybenzoic acid with ethanol and water solution of monoethanolamine. Polyhedron. 2023;242:116491. doi: 10.1016/j.poly.2023.116491. [DOI] [Google Scholar]
  • 33. Çapan İ, Hawash M, Qaoud MT, Levent G, Ezgi Nurdan YT, et al. Synthesis of novel carbazole hydrazine-carbothioamide scaffold as potent antioxidant, anticancer and antimicrobial agents. BMC Chemistry. 2024;18(1):102. doi: 10.1186/s13065-024-01207-1. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 34. Necmi D, Halil GO, Erman D, Gökhan A, Tuğgan A, et al. Quantum computational, spectroscopic investigations on N-(2-((2-chloro-4, 5-dicyanophenyl) amino) ethyl)-4-methylbenzenesulfonamide by DFT/TD-DFT with different solvents, molecular docking and drug-likeness researches. Colloids and Surfaces A: Physicochemical and Engineering Aspects. 2022;638:128311. doi: 10.1016/j.colsurfa.2022.128311. [DOI] [Google Scholar]
  • 35. Hanwell MD, Curtis DE, Lonie DC, Vandermeersch T, Zurek E, et al. Avogadro: an advanced semantic chemical editor, visualization, and analysis platform. Journal of Cheminformatics. 2012;4:1–17. doi: 10.1186/1758-2946-4-17. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 36. Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, et al. The protein data bank. Nucleic Acids Research. 2000;28(1):235–242. doi: 10.1093/nar/28.1.235. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 37. Morris GM, Huey R, Lindstrom W, Sanner MF, Belew RK, et al. AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibility. Journal of Computational Chemistry. 2009;30(16):2785–2791. doi: 10.1002/jcc.21256. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 38. Sanjar K, Bakhrom B, Aziz I, Alisher E, Jamshid A, et al. Antimicrobial activity enhancement and acute toxicity lowering of benzamide through preparation of metal complexes. Journal of Molecular Structure. 2024;1303:137620. doi: 10.1016/j.molstruc.2024.137620. [DOI] [Google Scholar]
  • 39. Avazbek BI, Jamshid MA, Bakhtiyar TI, Alisher GE, Shaxnoz SA, et al. Synthesis, structure, Hirshfeld surface analysis of the new copper complex of 3, 5-dinitrobenzoic acid and docking study of its metal complexes bioactivity. Journal of Molecular Structure. 2023;1292:136105. doi: 10.1016/j.molstruc.2023.136105. [DOI] [Google Scholar]
  • 40.BIOVIA. Dassault Systèmes, BIOVIA Discovery Studio Visualizer v21.1.0.20298. Dassault Systèmes; San Diego, CA: 2021. [Google Scholar]
  • 41. Liu JR, Gao Y, Jin B, Guo D, Deng F, et al. Design, synthesis, antifungal activity, and molecular docking of streptochlorin derivatives containing the nitrile group. Marine Drugs. 2023;21(2):103. doi: 10.3390/md21020103. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 42. He Z, Huang DC, Guo D, Deng F, Sha Q, et al. Synthesis, fungicidal activity and molecular docking studies of tavaborole derivatives. Advanced Agrochem. 2023;2(2):185–195. doi: 10.1016/j.aac.2023.05.004. [DOI] [Google Scholar]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Table S1.

Selected bond lengths [Å] for the cocrystal.

Bond Length [Å] Bond Length [Å] Bond Length [Å]
Cu2-Cu2 2.6208(6) N1-C32 1.335(3) C1-C6 1.394(4)
Cu2-O12 1.9845(16) N1-C33 1.446(3) C34-C33 1.516(3)
Cu2-O11 1.9659(16) N1-C29 1.461(3) C2-C3 1.385(4)
Cu2-O9 1.9744(17) O1-C2 1.356(3) C16-C17 1.390(4)
Cu2-O8 1.9539(17) O10-C23 1.349(3) C23-C24 1.397(4)
Cu2-O16 2.1062(17) O7-C16 1.343(4) C9-C10 1.391(4)
Cu1-Cu1 2.6428(6) O14-C34 1.225(3) C31-C30 1.496(5)
Cu1-O3 1.9682(16) O4-C9 1.363(4) C6-C5 1.382(4)
Cu1-O2 1.9722(16) N2-C34 1.319(3) C20-C19 1.373(4)
Cu1-O6 1.9719(17) C7-C1 1.477(3) C27-C26 1.381(4)
Cu1-O15 2.1203(17) C28-C22 1.478(3) C13-C12 1.384(4)
Cu1-O5 1.9536(16) C8-C14 1.480(3) C29-C30 1.519(5)
O12-C28 1.274(3) C8-C9 1.390(4) C10-C11 1.359(5)
O3-C7 1.260(3) C8-C13 1.373(4) C24-C25 1.369(5)
O11-C28 1.261(3) C21-C15 1.482(3) C3-C4 1.373(5)
O2-C7 1.272(3) C22-C23 1.407(3) C26-C25 1.389(5)
O6-C14 1.277(3) C22-C27 1.390(3) C5-C4 1.374(5)
O9-C21 1.271(3) C32-C31 1.499(4) C17-C18 1.349(5)
O8-C21 1.260(3) C15-C16 1.405(4) C18-C19 1.393(5)
O5-C14 1.254(3) C15-C20 1.388(4) C11-C12 1.364(5)
O13-C32 1.235(3) C1-C2 1.400(4)

Symmetry transformations used to generate equivalent atoms.

Table S2.

Selected bond angles [°] for the cocrystal.

Bond Angle [°] Bond Angle [°] Bond Angle [°]
O12-Cu2-Cu2 84.31(5) C21-O9-Cu2 123.11(16) N2-C34-C33 117.8(2)
O12-Cu2-O16 92.18(7) C21-O8-Cu2 123.64(16) N1-C33-C34 116.4(2)
O11-Cu2-Cu2 84.51(5) C14-O5-Cu1 127.46(16) O1-C2-C1 122.6(2)
O11-Cu2-O12 168.79(7) C32-N1-C33 124.6(2) O1-C2-C3 117.3(3)
O11-Cu2-O9 90.70(7) C32-N1-C29 113.5(2) C3-C2-C1 120.0(3)
O11-Cu2-O16 99.00(7) C33-N1-C29 121.6(2) O7-C16-C15 123.2(2)
O9-Cu2-Cu2 84.08(5) O3-C7-O2 123.6(2) O7-C16-C17 117.7(3)
O9-Cu2-O12 88.93(7) O3-C7-C1 119.3(2) C17-C16-C15 119.0(3)
O9-Cu2-O16 96.13(9) O2-C7-C1 117.1(2) O10-C23-C22 122.6(2)
O8-Cu2-Cu2 84.71(5) O12-C28-C22 118.1(2) O10-C23-C24 118.0(2)
O8-Cu2-O12 89.29(7) O11-C28-O12 123.8(2) C24-C23-C22 119.4(3)
O8-Cu2-O11 88.91(8) O11-C28-C22 118.1(2) O4-C9-C8 123.3(2)
O8-Cu2-O9 168.76(7) C9-C8-C14 122.8(2) O4-C9-C10 117.2(3)
O8-Cu2-O16 95.03(9) C13-C8-C14 118.4(2) C8-C9-C10 119.5(3)
O16-Cu2-Cu2 176.49(6) C13-C8-C9 118.7(2) C30-C31-C32 104.3(2)
O3-Cu1-Cu1 88.46(5) O6-C14-C8 118.2(2) C5-C6-C1 120.1(3)
O3-Cu1-O2 167.95(7) O5-C14-O6 123.9(2) C19-C20-C15 121.3(3)
O3-Cu1-O6 88.09(7) O5-C14-C8 117.9(2) C26-C27-C22 121.5(3)
O3-Cu1-O15 98.74(7) O9-C21-C15 118.0(2) C8-C13-C12 121.6(3)
O2-Cu1-Cu1 79.51(5) O8-C21-O9 124.3(2) N1-C29-C30 103.0(2)
O2-Cu1-O15 93.31(7) O8-C21-C15 117.7(2) C11-C10-C9 120.1(3)
O6-Cu1-Cu1 86.49(5) C23-C22-C28 121.4(2) C25-C24-C23 120.4(3)
O6-Cu1-O2 90.45(8) C27-C22-C28 119.8(2) C4-C3-C2 119.5(3)
O6-Cu1-O15 95.99(7) C27-C22-C23 118.7(2) C27-C26-C25 119.0(3)
O15-Cu1-Cu1 172.44(6) O13-C32-N1 124.2(2) C4-C5-C6 119.7(3)
O5-Cu1-Cu1 81.49(5) O13-C32-C31 126.9(2) C18-C17-C16 121.0(3)
O5-Cu1-O3 89.64(8) N1-C32-C31 108.9(2) C24-C25-C26 120.9(3)
O5-Cu1-O2 89.28(8) C16-C15-C21 121.8(2) C3-C4-C5 121.4(3)
O5-Cu1-O6 167.81(7) C20-C15-C21 119.3(2) C17-C18-C19 120.8(3)
O5-Cu1-O15 96.18(7) C20-C15-C16 118.8(2) C20-C19-C18 119.0(3)
C28-O12-Cu2 123.16(15) C2-C1-C7 121.0(2) C10-C11-C12 121.3(3)
C7-O3-Cu1 119.15(15) C6-C1-C7 119.8(2) C11-C12-C13 118.7(3)
C28-O11-Cu2 124.22(15) C6-C1-C2 119.2(2) C31-C30-C29 105.8(3)
C7-O2-Cu1 129.26(16) O14-C34-N2 124.1(2)
C14-O6-Cu1 120.22(16) O14-C34-C33 118.1(2)

Symmetry transformations used to generate equivalent atoms.

Table S3.

Torsion angles [°] for the cocrystal.

Dihedral bond Angle [°] Dihedral bond Angle [°]
Cu2-O12-C28-O11 −2.1(3) C14-C8-C9-O4 −3.1(4)
Cu2-O12-C28-C22 178.03(14) C14-C8-C9-C10 176.1(3)
Cu2-O11-C28-O12 1.1(3) C14-C8-C13-C12 −176.4(3)
Cu2-O11-C28-C22 −179.10(14) C21-C15-C16-O7 −2.0(4)
Cu2-O9-C21-O8 4.5(3) C21-C15-C16-C17 178.9(3)
Cu2-O9-C21-C15 −174.38(15) C21-C15-C20-C19 −179.0(3)
Cu2-O8-C21-O9 −5.5(3) C22-C23-C24-C25 2.0(4)
Cu2-O8-C21-C15 173.39(15) C22-C27-C26-C25 2.5(5)
Cu1-O3-C7-O2 −0.9(3) C32-N1-C33-C34 93.0(3)
Cu1-O3-C7-C1 178.50(15) C32-N1-C29-C30 −11.5(4)
Cu1-O2-C7-O3 2.1(4) C32-C31-C30-C29 −20.5(4)
Cu1-O2-C7-C1 −177.34(15) C15-C16-C17-C18 0.1(5)
Cu1-O6-C14-O5 5.6(3) C15-C20-C19-C18 0.1(6)
Cu1-O6-C14-C8 −172.56(16) C1-C2-C3-C4 1.3(4)
Cu1-O5-C14-O6 −8.9(4) C1-C6-C5-C4 0.5(5)
Cu1-O5-C14-C8 169.26(16) C33-N1-C32-O13 −7.3(4)
O12-C28-C22-C23 6.7(3) C33-N1-C32-C31 171.6(2)
O12-C28-C22-C27 −171.6(2) C33-N1-C29-C30 175.2(3)
O3-C7-C1-C2 −170.2(2) C2-C1-C6-C5 1.2(4)
O3-C7-C1-C6 9.6(3) C2-C3-C4-C5 0.4(5)
O11-C28-C22-C23 −173.2(2) C16-C15-C20-C19 −0.4(5)
O11-C28-C22-C27 8.5(3) C16-C17-C18-C19 −0.4(7)
O2-C7-C1-C2 9.3(3) C23-C22-C27-C26 −0.3(4)
O2-C7-C1-C6 −171.0(2) C23-C24-C25-C26 0.2(5)
O9-C21-C15-C16 0.0(4) C9-C8-C14-O6 −0.8(4)
O9-C21-C15-C20 178.5(2) C9-C8-C14-O5 −179.1(2)
O8-C21-C15-C16 −179.0(2) C9-C8-C13-C12 1.6(5)
O8-C21-C15-C20 −0.5(4) C9-C10-C11-C12 −2.0(7)
O13-C32-C31-C30 −167.1(3) C6-C1-C2-O1 176.6(2)
N1-C32-C31-C30 14.0(4) C6-C1-C2-C3 −2.1(4)
N1-C29-C30-C31 19.5(4) C6-C5-C4-C3 −1.3(6)
O1-C2-C3-C4 −177.4(3) C20-C15-C16-O7 179.5(3)
O10-C23-C24-C25 −178.0(3) C20-C15-C16-C17 0.4(4)
O7-C16-C17-C18 −179.1(3) C27-C22-C23-O10 178.1(2)
O14-C34-C33-N1 160.0(2) C27-C22-C23-C24 −1.9(4)
O4-C9-C10-C11 −178.7(3) C27-C26-C25-C24 −2.5(6)
N2-C34-C33-N1 −21.9(4) C13-C8-C14-O6 177.2(2)
C7-C1-C2-O1 −3.6(4) C13-C8-C14-O5 −1.1(4)
C7-C1-C2-C3 177.7(2) C13-C8-C9-O4 179.0(3)
C7-C1-C6-C5 −178.6(3) C13-C8-C9-C10 −1.8(4)
C28-C22-C23-O10 −0.3(4) C29-N1-C32-O13 179.6(3)
C28-C22-C23-C24 179.7(2) C29-N1-C32-C31 −1.4(3)
C28-C22-C27-C26 178.0(3) C29-N1-C33-C34 −94.5(3)
C8-C9-C10-C11 2.0(5) C10-C11-C12-C13 1.8(7)
C8-C13-C12-C11 −1.6(6) C17-C18-C19-C20 0.4(7)

Symmetry transformations used to generate equivalent atoms.

Data Availability Statement

Data availability is not applicable to this study.


Articles from Turkish Journal of Chemistry are provided here courtesy of The Scientific and Technological Research Council of Turkey

RESOURCES