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. 1998 Oct 1;17(19):5796–5804. doi: 10.1093/emboj/17.19.5796

Accumulation of mitochondrially synthesized Saccharomyces cerevisiae Cox2p and Cox3p depends on targeting information in untranslated portions of their mRNAs.

M E Sanchirico 1, T D Fox 1, T L Mason 1
PMCID: PMC1170907  PMID: 9755179

Abstract

The essential products of the yeast mitochondrial translation system are seven hydrophobic membrane proteins and Var1p, a hydrophilic protein in the small ribosomal subunit. Translation of the membrane proteins depends on nuclearly encoded, mRNA-specific translational activators that recognize the 5'-untranslated leaders of their target mRNAs. These translational activators are themselves membrane associated and could therefore tether translation to the inner membrane. In this study, we tested whether chimeric mRNAs with the untranslated sequences normally present on the mRNA encoding soluble Var1p, can direct functional expression of coding sequences specifying the integral membrane proteins Cox2p and Cox3p. DNA sequences specifying these chimeric mRNAs were inserted into mtDNA at the VAR1 locus and expressed in strains containing a nuclearly localized plasmid that supplies a functional form of Var1p, imported from the cytoplasm. Although cells expressing these chimeric mRNAs actively synthesized both membrane proteins, they were severely deficient in cytochrome c oxidase activity and in the accumulation of Cox2p and Cox3p, respectively. These data strongly support the physiological importance of interactions between membrane-bound mRNA-specific translational activators and the native 5'-untranslated leaders of the COX2 and COX3 mRNAs for localizing productive synthesis of Cox2p and Cox3p to the inner membrane.

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Selected References

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  1. Anderson D. M., Schneewind O. A mRNA signal for the type III secretion of Yop proteins by Yersinia enterocolitica. Science. 1997 Nov 7;278(5340):1140–1143. doi: 10.1126/science.278.5340.1140. [DOI] [PubMed] [Google Scholar]
  2. Attardi G., Schatz G. Biogenesis of mitochondria. Annu Rev Cell Biol. 1988;4:289–333. doi: 10.1146/annurev.cb.04.110188.001445. [DOI] [PubMed] [Google Scholar]
  3. Brown N. G., Costanzo M. C., Fox T. D. Interactions among three proteins that specifically activate translation of the mitochondrial COX3 mRNA in Saccharomyces cerevisiae. Mol Cell Biol. 1994 Feb;14(2):1045–1053. doi: 10.1128/mcb.14.2.1045. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Chicurel M. E., Singer R. H., Meyer C. J., Ingber D. E. Integrin binding and mechanical tension induce movement of mRNA and ribosomes to focal adhesions. Nature. 1998 Apr 16;392(6677):730–733. doi: 10.1038/33719. [DOI] [PubMed] [Google Scholar]
  5. Cohen A, Mayfield SP. Translational regulation of gene expression in plants. Curr Opin Biotechnol. 1997 Apr 1;8(2):189–194. doi: 10.1016/s0958-1669(97)80101-2. [DOI] [PubMed] [Google Scholar]
  6. Corsi A. K., Schekman R. Mechanism of polypeptide translocation into the endoplasmic reticulum. J Biol Chem. 1996 Nov 29;271(48):30299–30302. doi: 10.1074/jbc.271.48.30299. [DOI] [PubMed] [Google Scholar]
  7. Costanzo M. C., Fox T. D. Control of mitochondrial gene expression in Saccharomyces cerevisiae. Annu Rev Genet. 1990;24:91–113. doi: 10.1146/annurev.ge.24.120190.000515. [DOI] [PubMed] [Google Scholar]
  8. Costanzo M. C., Fox T. D. Product of Saccharomyces cerevisiae nuclear gene PET494 activates translation of a specific mitochondrial mRNA. Mol Cell Biol. 1986 Nov;6(11):3694–3703. doi: 10.1128/mcb.6.11.3694. [DOI] [PMC free article] [PubMed] [Google Scholar]
  9. Costanzo M. C., Fox T. D. Specific translational activation by nuclear gene products occurs in the 5' untranslated leader of a yeast mitochondrial mRNA. Proc Natl Acad Sci U S A. 1988 Apr;85(8):2677–2681. doi: 10.1073/pnas.85.8.2677. [DOI] [PMC free article] [PubMed] [Google Scholar]
  10. Costanzo M. C., Fox T. D. Suppression of a defect in the 5' untranslated leader of mitochondrial COX3 mRNA by a mutation affecting an mRNA-specific translational activator protein. Mol Cell Biol. 1993 Aug;13(8):4806–4813. doi: 10.1128/mcb.13.8.4806. [DOI] [PMC free article] [PubMed] [Google Scholar]
  11. Costanzo M. C., Seaver E. C., Fox T. D. At least two nuclear gene products are specifically required for translation of a single yeast mitochondrial mRNA. EMBO J. 1986 Dec 20;5(13):3637–3641. doi: 10.1002/j.1460-2075.1986.tb04693.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  12. Daum G., Gasser S. M., Schatz G. Import of proteins into mitochondria. Energy-dependent, two-step processing of the intermembrane space enzyme cytochrome b2 by isolated yeast mitochondria. J Biol Chem. 1982 Nov 10;257(21):13075–13080. [PubMed] [Google Scholar]
  13. Deshler J. O., Highett M. I., Schnapp B. J. Localization of Xenopus Vg1 mRNA by Vera protein and the endoplasmic reticulum. Science. 1997 May 16;276(5315):1128–1131. doi: 10.1126/science.276.5315.1128. [DOI] [PubMed] [Google Scholar]
  14. Douglas M., Finkelstein D., Butow R. A. Analysis of products of mitochondrial protein synthesis in yeast: genetic and biochemical aspects. Methods Enzymol. 1979;56:58–66. doi: 10.1016/0076-6879(79)56009-1. [DOI] [PubMed] [Google Scholar]
  15. Dowhan W., Bibus C. R., Schatz G. The cytoplasmically-made subunit IV is necessary for assembly of cytochrome c oxidase in yeast. EMBO J. 1985 Jan;4(1):179–184. doi: 10.1002/j.1460-2075.1985.tb02334.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  16. Dunstan H. M., Green-Willms N. S., Fox T. D. In vivo analysis of Saccharomyces cerevisiae COX2 mRNA 5'-untranslated leader functions in mitochondrial translation initiation and translational activation. Genetics. 1997 Sep;147(1):87–100. doi: 10.1093/genetics/147.1.87. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Elble R. A simple and efficient procedure for transformation of yeasts. Biotechniques. 1992 Jul;13(1):18–20. [PubMed] [Google Scholar]
  18. Fearon K., Mason T. L. Structure and regulation of a nuclear gene in Saccharomyces cerevisiae that specifies MRP7, a protein of the large subunit of the mitochondrial ribosome. Mol Cell Biol. 1988 Sep;8(9):3636–3646. doi: 10.1128/mcb.8.9.3636. [DOI] [PMC free article] [PubMed] [Google Scholar]
  19. Folley L. S., Fox T. D. Site-directed mutagenesis of a Saccharomyces cerevisiae mitochondrial translation initiation codon. Genetics. 1991 Nov;129(3):659–668. doi: 10.1093/genetics/129.3.659. [DOI] [PMC free article] [PubMed] [Google Scholar]
  20. Fox T. D., Costanzo M. C., Strick C. A., Marykwas D. L., Seaver E. C., Rosenthal J. K. Translational regulation of mitochondrial gene expression by nuclear genes of Saccharomyces cerevisiae. Philos Trans R Soc Lond B Biol Sci. 1988 May 31;319(1193):97–105. doi: 10.1098/rstb.1988.0034. [DOI] [PubMed] [Google Scholar]
  21. Fox T. D., Folley L. S., Mulero J. J., McMullin T. W., Thorsness P. E., Hedin L. O., Costanzo M. C. Analysis and manipulation of yeast mitochondrial genes. Methods Enzymol. 1991;194:149–165. doi: 10.1016/0076-6879(91)94013-3. [DOI] [PubMed] [Google Scholar]
  22. Fox T. D., Sanford J. C., McMullin T. W. Plasmids can stably transform yeast mitochondria lacking endogenous mtDNA. Proc Natl Acad Sci U S A. 1988 Oct;85(19):7288–7292. doi: 10.1073/pnas.85.19.7288. [DOI] [PMC free article] [PubMed] [Google Scholar]
  23. Gillham N. W., Boynton J. E., Hauser C. R. Translational regulation of gene expression in chloroplasts and mitochondria. Annu Rev Genet. 1994;28:71–93. doi: 10.1146/annurev.ge.28.120194.000443. [DOI] [PubMed] [Google Scholar]
  24. Groot G. S., Mason T. L., Van Harten-Loosbroek N. Var1 is associated with the small ribosomal subunit of mitochondrial ribosomes in yeast. Mol Gen Genet. 1979 Jul 24;174(3):339–342. doi: 10.1007/BF00267808. [DOI] [PubMed] [Google Scholar]
  25. Haffter P., McMullin T. W., Fox T. D. A genetic link between an mRNA-specific translational activator and the translation system in yeast mitochondria. Genetics. 1990 Jul;125(3):495–503. doi: 10.1093/genetics/125.3.495. [DOI] [PMC free article] [PubMed] [Google Scholar]
  26. Haffter P., McMullin T. W., Fox T. D. Functional interactions among two yeast mitochondrial ribosomal proteins and an mRNA-specific translational activator. Genetics. 1991 Feb;127(2):319–326. doi: 10.1093/genetics/127.2.319. [DOI] [PMC free article] [PubMed] [Google Scholar]
  27. He S., Fox T. D. Membrane translocation of mitochondrially coded Cox2p: distinct requirements for export of N and C termini and dependence on the conserved protein Oxa1p. Mol Biol Cell. 1997 Aug;8(8):1449–1460. doi: 10.1091/mbc.8.8.1449. [DOI] [PMC free article] [PubMed] [Google Scholar]
  28. Hill J. E., Myers A. M., Koerner T. J., Tzagoloff A. Yeast/E. coli shuttle vectors with multiple unique restriction sites. Yeast. 1986 Sep;2(3):163–167. doi: 10.1002/yea.320020304. [DOI] [PubMed] [Google Scholar]
  29. Hudspeth M. E., Ainley W. M., Shumard D. S., Butow R. A., Grossman L. I. Location and structure of the var1 gene on yeast mitochondrial DNA: nucleotide sequence of the 40.0 allele. Cell. 1982 Sep;30(2):617–626. doi: 10.1016/0092-8674(82)90258-6. [DOI] [PubMed] [Google Scholar]
  30. Ito H., Fukuda Y., Murata K., Kimura A. Transformation of intact yeast cells treated with alkali cations. J Bacteriol. 1983 Jan;153(1):163–168. doi: 10.1128/jb.153.1.163-168.1983. [DOI] [PMC free article] [PubMed] [Google Scholar]
  31. LOWRY O. H., ROSEBROUGH N. J., FARR A. L., RANDALL R. J. Protein measurement with the Folin phenol reagent. J Biol Chem. 1951 Nov;193(1):265–275. [PubMed] [Google Scholar]
  32. Lithgow T., Cuezva J. M., Silver P. A. Highways for protein delivery to the mitochondria. Trends Biochem Sci. 1997 Apr;22(4):110–113. doi: 10.1016/s0968-0004(97)01007-4. [DOI] [PubMed] [Google Scholar]
  33. Maleszka R., Skelly P. J., Clark-Walker G. D. Rolling circle replication of DNA in yeast mitochondria. EMBO J. 1991 Dec;10(12):3923–3929. doi: 10.1002/j.1460-2075.1991.tb04962.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  34. Mason T. L., Poyton R. O., Wharton D. C., Schatz G. Cytochrome c oxidase from bakers' yeast. I. Isolation and properties. J Biol Chem. 1973 Feb 25;248(4):1346–1354. [PubMed] [Google Scholar]
  35. McMullin T. W., Fox T. D. COX3 mRNA-specific translational activator proteins are associated with the inner mitochondrial membrane in Saccharomyces cerevisiae. J Biol Chem. 1993 Jun 5;268(16):11737–11741. [PubMed] [Google Scholar]
  36. McMullin T. W., Haffter P., Fox T. D. A novel small-subunit ribosomal protein of yeast mitochondria that interacts functionally with an mRNA-specific translational activator. Mol Cell Biol. 1990 Sep;10(9):4590–4595. doi: 10.1128/mcb.10.9.4590. [DOI] [PMC free article] [PubMed] [Google Scholar]
  37. Michaelis U., Körte A., Rödel G. Association of cytochrome b translational activator proteins with the mitochondrial membrane: implications for cytochrome b expression in yeast. Mol Gen Genet. 1991 Nov;230(1-2):177–185. doi: 10.1007/BF00290666. [DOI] [PubMed] [Google Scholar]
  38. Mulero J. J., Fox T. D. Alteration of the Saccharomyces cerevisiae COX2 mRNA 5'-untranslated leader by mitochondrial gene replacement and functional interaction with the translational activator protein PET111. Mol Biol Cell. 1993 Dec;4(12):1327–1335. doi: 10.1091/mbc.4.12.1327. [DOI] [PMC free article] [PubMed] [Google Scholar]
  39. Mulero J. J., Fox T. D. PET111 acts in the 5'-leader of the Saccharomyces cerevisiae mitochondrial COX2 mRNA to promote its translation. Genetics. 1993 Mar;133(3):509–516. doi: 10.1093/genetics/133.3.509. [DOI] [PMC free article] [PubMed] [Google Scholar]
  40. Mulero J. J., Fox T. D. Reduced but accurate translation from a mutant AUA initiation codon in the mitochondrial COX2 mRNA of Saccharomyces cerevisiae. Mol Gen Genet. 1994 Feb;242(4):383–390. doi: 10.1007/BF00281787. [DOI] [PubMed] [Google Scholar]
  41. Müller P. P., Reif M. K., Zonghou S., Sengstag C., Mason T. L., Fox T. D. A nuclear mutation that post-transcriptionally blocks accumulation of a yeast mitochondrial gene product can be suppressed by a mitochondrial gene rearrangement. J Mol Biol. 1984 Jun 5;175(4):431–452. doi: 10.1016/0022-2836(84)90178-5. [DOI] [PubMed] [Google Scholar]
  42. Na J. G., Pinto I., Hampsey M. Isolation and characterization of SUA5, a novel gene required for normal growth in Saccharomyces cerevisiae. Genetics. 1992 Aug;131(4):791–801. doi: 10.1093/genetics/131.4.791. [DOI] [PMC free article] [PubMed] [Google Scholar]
  43. Neupert W. Protein import into mitochondria. Annu Rev Biochem. 1997;66:863–917. doi: 10.1146/annurev.biochem.66.1.863. [DOI] [PubMed] [Google Scholar]
  44. Ng D. T., Walter P. Protein translocation across the endoplasmic reticulum. Curr Opin Cell Biol. 1994 Aug;6(4):510–516. doi: 10.1016/0955-0674(94)90069-8. [DOI] [PubMed] [Google Scholar]
  45. Poutre C. G., Fox T. D. PET111, a Saccharomyces cerevisiae nuclear gene required for translation of the mitochondrial mRNA encoding cytochrome c oxidase subunit II. Genetics. 1987 Apr;115(4):637–647. doi: 10.1093/genetics/115.4.637. [DOI] [PMC free article] [PubMed] [Google Scholar]
  46. Rapoport T. A., Jungnickel B., Kutay U. Protein transport across the eukaryotic endoplasmic reticulum and bacterial inner membranes. Annu Rev Biochem. 1996;65:271–303. doi: 10.1146/annurev.bi.65.070196.001415. [DOI] [PubMed] [Google Scholar]
  47. Rochaix J. D. Post-transcriptional regulation of chloroplast gene expression in Chlamydomonas reinhardtii. Plant Mol Biol. 1996 Oct;32(1-2):327–341. doi: 10.1007/BF00039389. [DOI] [PubMed] [Google Scholar]
  48. Rouslin W., Schatz G. Interdependence between promitochondrial and cytoplasmic protein synthesis during respiratory adaptation in baker's yeast. Biochem Biophys Res Commun. 1969 Dec 4;37(6):1002–1007. doi: 10.1016/0006-291x(69)90231-9. [DOI] [PubMed] [Google Scholar]
  49. Saavedra C., Reyero M. I., Zouros E. Male-dependent doubly uniparental inheritance of mitochondrial DNA and female-dependent sex-ratio in the mussel Mytilus galloprovincialis. Genetics. 1997 Apr;145(4):1073–1082. doi: 10.1093/genetics/145.4.1073. [DOI] [PMC free article] [PubMed] [Google Scholar]
  50. Sanchirico M., Tzellas A., Fox T. D., Conrad-Webb H., Periman P. S., Mason T. L. Relocation of the unusual VAR1 gene from the mitochondrion to the nucleus. Biochem Cell Biol. 1995 Nov-Dec;73(11-12):987–995. doi: 10.1139/o95-106. [DOI] [PubMed] [Google Scholar]
  51. Schatz G., Dobberstein B. Common principles of protein translocation across membranes. Science. 1996 Mar 15;271(5255):1519–1526. doi: 10.1126/science.271.5255.1519. [DOI] [PubMed] [Google Scholar]
  52. Smooker P. M., Wright J. F., Linnane A. W., Lukins H. B. A mitochondrial intergenic mutation affecting processing of specific yeast mitochondrial transcripts. Nucleic Acids Res. 1988 Oct 11;16(19):9081–9095. doi: 10.1093/nar/16.19.9081. [DOI] [PMC free article] [PubMed] [Google Scholar]
  53. Steele D. F., Butler C. A., Fox T. D. Expression of a recoded nuclear gene inserted into yeast mitochondrial DNA is limited by mRNA-specific translational activation. Proc Natl Acad Sci U S A. 1996 May 28;93(11):5253–5257. doi: 10.1073/pnas.93.11.5253. [DOI] [PMC free article] [PubMed] [Google Scholar]
  54. Terpstra P., Butow R. A. The role of var1 in the assembly of yeast mitochondrial ribosomes. J Biol Chem. 1979 Dec 25;254(24):12662–12669. [PubMed] [Google Scholar]
  55. Tzagoloff A., Myers A. M. Genetics of mitochondrial biogenesis. Annu Rev Biochem. 1986;55:249–285. doi: 10.1146/annurev.bi.55.070186.001341. [DOI] [PubMed] [Google Scholar]
  56. Walter P., Lingappa V. R. Mechanism of protein translocation across the endoplasmic reticulum membrane. Annu Rev Cell Biol. 1986;2:499–516. doi: 10.1146/annurev.cb.02.110186.002435. [DOI] [PubMed] [Google Scholar]
  57. Wickner W., Leonard M. R. Escherichia coli preprotein translocase. J Biol Chem. 1996 Nov 22;271(47):29514–29516. doi: 10.1074/jbc.271.47.29514. [DOI] [PubMed] [Google Scholar]
  58. Wiesenberger G., Costanzo M. C., Fox T. D. Analysis of the Saccharomyces cerevisiae mitochondrial COX3 mRNA 5' untranslated leader: translational activation and mRNA processing. Mol Cell Biol. 1995 Jun;15(6):3291–3300. doi: 10.1128/mcb.15.6.3291. [DOI] [PMC free article] [PubMed] [Google Scholar]
  59. Zerges W., Rochaix J. D. Low density membranes are associated with RNA-binding proteins and thylakoids in the chloroplast of Chlamydomonas reinhardtii. J Cell Biol. 1998 Jan 12;140(1):101–110. doi: 10.1083/jcb.140.1.101. [DOI] [PMC free article] [PubMed] [Google Scholar]

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