Abstract
p204, a member of the interferon-inducible p200 family of murine proteins, is primarily nucleolar. We generated cell lines in which p204 was inducible by muristerone. This induction resulted in retardation of cell proliferation and inhibition of rRNA transcription in vivo. Interferon treatment, resulting in p204 induction and retardation of proliferation, also caused inhibition of rRNA transcription in vivo. p204 also inhibited rRNA transcription in vitro. This inhibition was overcome by addition of UBF1, the rRNA-specific transcription factor. A direct interaction between p204 and UBF1 was revealed in vitro in pull-down assays, and in vivo by co-immunoprecipitation from cell extracts. UBF1 bound strongly to at least two regions of p204: the N-terminal segment linked to the conserved 200 amino acid a segment, and the conserved 200 amino acid b segment. Cleavage of the a or b segments into two segments (encoded by single exons) resulted in a strong decrease or loss of binding. The inhibition of rRNA transcription by p204 may be due to the inhibition by p204 of the specific DNA binding of UBF1. This was revealed in electrophoretic mobility shift, magnetic bead and footprinting assays. Thus, p204 serves as a mediator of the inhibition of rRNA transcription by interferon.
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- Beckmann H., Chen J. L., O'Brien T., Tjian R. Coactivator and promoter-selective properties of RNA polymerase I TAFs. Science. 1995 Dec 1;270(5241):1506–1509. doi: 10.1126/science.270.5241.1506. [DOI] [PubMed] [Google Scholar]
- Bell S. P., Jantzen H. M., Tjian R. Assembly of alternative multiprotein complexes directs rRNA promoter selectivity. Genes Dev. 1990 Jun;4(6):943–954. doi: 10.1101/gad.4.6.943. [DOI] [PubMed] [Google Scholar]
- Bell S. P., Learned R. M., Jantzen H. M., Tjian R. Functional cooperativity between transcription factors UBF1 and SL1 mediates human ribosomal RNA synthesis. Science. 1988 Sep 2;241(4870):1192–1197. doi: 10.1126/science.3413483. [DOI] [PubMed] [Google Scholar]
- Bianchi M. E. Interaction of a protein from rat liver nuclei with cruciform DNA. EMBO J. 1988 Mar;7(3):843–849. doi: 10.1002/j.1460-2075.1988.tb02883.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Briggs J. A., Burrus G. R., Stickney B. D., Briggs R. C. Cloning and expression of the human myeloid cell nuclear differentiation antigen: regulation by interferon alpha. J Cell Biochem. 1992 May;49(1):82–92. doi: 10.1002/jcb.240490114. [DOI] [PubMed] [Google Scholar]
- Briggs R. C., Kao W. Y., Dworkin L. L., Briggs J. A., Dessypris E. N., Clark J. Regulation and specificity of MNDA expression in monocytes, macrophages, and leukemia/B lymphoma cell lines. J Cell Biochem. 1994 Dec;56(4):559–567. doi: 10.1002/jcb.240560417. [DOI] [PubMed] [Google Scholar]
- Cassidy B. G., Yang-Yen H. F., Rothblum L. I. Additional RNA polymerase I initiation site within the nontranscribed spacer region of the rat rRNA gene. Mol Cell Biol. 1987 Jul;7(7):2388–2396. doi: 10.1128/mcb.7.7.2388. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Cavanaugh A. H., Hempel W. M., Taylor L. J., Rogalsky V., Todorov G., Rothblum L. I. Activity of RNA polymerase I transcription factor UBF blocked by Rb gene product. Nature. 1995 Mar 9;374(6518):177–180. doi: 10.1038/374177a0. [DOI] [PubMed] [Google Scholar]
- Choubey D., Gutterman J. U. Inhibition of E2F-4/DP-1-stimulated transcription by p202. Oncogene. 1997 Jul 17;15(3):291–301. doi: 10.1038/sj.onc.1201184. [DOI] [PubMed] [Google Scholar]
- Choubey D., Lengyel P. Binding of an interferon-inducible protein (p202) to the retinoblastoma protein. J Biol Chem. 1995 Mar 17;270(11):6134–6140. doi: 10.1074/jbc.270.11.6134. [DOI] [PubMed] [Google Scholar]
- Choubey D., Lengyel P. Interferon action: cytoplasmic and nuclear localization of the interferon-inducible 52-kD protein that is encoded by the Ifi 200 gene from the gene 200 cluster. J Interferon Res. 1993 Feb;13(1):43–52. doi: 10.1089/jir.1993.13.43. [DOI] [PubMed] [Google Scholar]
- Choubey D., Lengyel P. Interferon action: nucleolar and nucleoplasmic localization of the interferon-inducible 72-kD protein that is encoded by the Ifi 204 gene from the gene 200 cluster. J Cell Biol. 1992 Mar;116(6):1333–1341. doi: 10.1083/jcb.116.6.1333. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Choubey D., Li S. J., Datta B., Gutterman J. U., Lengyel P. Inhibition of E2F-mediated transcription by p202. EMBO J. 1996 Oct 15;15(20):5668–5678. [PMC free article] [PubMed] [Google Scholar]
- Choubey D., Snoddy J., Chaturvedi V., Toniato E., Opdenakker G., Thakur A., Samanta H., Engel D. A., Lengyel P. Interferons as gene activators. Indications for repeated gene duplication during the evolution of a cluster of interferon-activatable genes on murine chromosome 1. J Biol Chem. 1989 Oct 15;264(29):17182–17189. [PubMed] [Google Scholar]
- Comai L., Tanese N., Tjian R. The TATA-binding protein and associated factors are integral components of the RNA polymerase I transcription factor, SL1. Cell. 1992 Mar 6;68(5):965–976. doi: 10.1016/0092-8674(92)90039-f. [DOI] [PubMed] [Google Scholar]
- Comai L., Zomerdijk J. C., Beckmann H., Zhou S., Admon A., Tjian R. Reconstitution of transcription factor SL1: exclusive binding of TBP by SL1 or TFIID subunits. Science. 1994 Dec 23;266(5193):1966–1972. doi: 10.1126/science.7801123. [DOI] [PubMed] [Google Scholar]
- Datta B., Li B., Choubey D., Nallur G., Lengyel P. p202, an interferon-inducible modulator of transcription, inhibits transcriptional activation by the p53 tumor suppressor protein, and a segment from the p53-binding protein 1 that binds to p202 overcomes this inhibition. J Biol Chem. 1996 Nov 1;271(44):27544–27555. doi: 10.1074/jbc.271.44.27544. [DOI] [PubMed] [Google Scholar]
- Datta B., Min W., Burma S., Lengyel P. Increase in p202 expression during skeletal muscle differentiation: inhibition of MyoD protein expression and activity by p202. Mol Cell Biol. 1998 Feb;18(2):1074–1083. doi: 10.1128/mcb.18.2.1074. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Dawson M. J., Elwood N. J., Johnstone R. W., Trapani J. A. The IFN-inducible nucleoprotein IFI 16 is expressed in cells of the monocyte lineage, but is rapidly and markedly down-regulated in other myeloid precursor populations. J Leukoc Biol. 1998 Oct;64(4):546–554. doi: 10.1002/jlb.64.4.546. [DOI] [PubMed] [Google Scholar]
- Dawson M. J., Trapani J. A., Briggs R. C., Nicholl J. K., Sutherland G. R., Baker E. The closely linked genes encoding the myeloid nuclear differentiation antigen (MNDA) and IFI16 exhibit contrasting haemopoietic expression. Immunogenetics. 1995;41(1):40–43. doi: 10.1007/BF00188431. [DOI] [PubMed] [Google Scholar]
- Dawson M. J., Trapani J. A. HIN-200: a novel family of IFN-inducible nuclear proteins expressed in leukocytes. J Leukoc Biol. 1996 Sep;60(3):310–316. doi: 10.1002/jlb.60.3.310. [DOI] [PubMed] [Google Scholar]
- DeYoung K. L., Ray M. E., Su Y. A., Anzick S. L., Johnstone R. W., Trapani J. A., Meltzer P. S., Trent J. M. Cloning a novel member of the human interferon-inducible gene family associated with control of tumorigenicity in a model of human melanoma. Oncogene. 1997 Jul 24;15(4):453–457. doi: 10.1038/sj.onc.1201206. [DOI] [PubMed] [Google Scholar]
- Gariglio M., De Andrea M., Lembo M., Ravotto M., Zappador C., Valente G., Landolfo S. The murine homolog of the HIN 200 family, Ifi 204, is constitutively expressed in myeloid cells and selectively induced in the monocyte/macrophage lineage. J Leukoc Biol. 1998 Nov;64(5):608–614. doi: 10.1002/jlb.64.5.608. [DOI] [PubMed] [Google Scholar]
- Gribaudo G., Ravaglia S., Guandalini L., Riera L., Gariglio M., Landolfo S. Molecular cloning and expression of an interferon-inducible protein encoded by gene 203 from the gene 200 cluster. Eur J Biochem. 1997 Oct 1;249(1):258–264. doi: 10.1111/j.1432-1033.1997.t01-1-00258.x. [DOI] [PubMed] [Google Scholar]
- Haglund R. E., Rothblum L. I. Isolation, fractionation and reconstitution of a nuclear extract capable of transcribing ribosomal DNA. Mol Cell Biochem. 1987 Jan;73(1):11–20. doi: 10.1007/BF00229371. [DOI] [PubMed] [Google Scholar]
- Hanada K., Song C. Z., Yamamoto K., Yano K., Maeda Y., Yamaguchi K., Muramatsu M. RNA polymerase I associated factor 53 binds to the nucleolar transcription factor UBF and functions in specific rDNA transcription. EMBO J. 1996 May 1;15(9):2217–2226. [PMC free article] [PubMed] [Google Scholar]
- Hannan K. M., Rothblum L. I., Jefferson L. S. Regulation of ribosomal DNA transcription by insulin. Am J Physiol. 1998 Jul;275(1 Pt 1):C130–C138. doi: 10.1152/ajpcell.1998.275.1.C130. [DOI] [PubMed] [Google Scholar]
- Hannan R. D., Rothblum L. I. Regulation of ribosomal DNA transcription during neonatal cardiomyocyte hypertrophy. Cardiovasc Res. 1995 Oct;30(4):501–510. [PubMed] [Google Scholar]
- Hempel W. M., Cavanaugh A. H., Hannan R. D., Taylor L., Rothblum L. I. The species-specific RNA polymerase I transcription factor SL-1 binds to upstream binding factor. Mol Cell Biol. 1996 Feb;16(2):557–563. doi: 10.1128/mcb.16.2.557. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Herwig S., Strauss M. The retinoblastoma protein: a master regulator of cell cycle, differentiation and apoptosis. Eur J Biochem. 1997 Jun 15;246(3):581–601. doi: 10.1111/j.1432-1033.1997.t01-2-00581.x. [DOI] [PubMed] [Google Scholar]
- Hisatake K., Nishimura T., Maeda Y., Hanada K., Song C. Z., Muramatsu M. Cloning and structural analysis of cDNA and the gene for mouse transcription factor UBF. Nucleic Acids Res. 1991 Sep 11;19(17):4631–4637. doi: 10.1093/nar/19.17.4631. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Jantzen H. M., Admon A., Bell S. P., Tjian R. Nucleolar transcription factor hUBF contains a DNA-binding motif with homology to HMG proteins. Nature. 1990 Apr 26;344(6269):830–836. doi: 10.1038/344830a0. [DOI] [PubMed] [Google Scholar]
- Jantzen H. M., Chow A. M., King D. S., Tjian R. Multiple domains of the RNA polymerase I activator hUBF interact with the TATA-binding protein complex hSL1 to mediate transcription. Genes Dev. 1992 Oct;6(10):1950–1963. doi: 10.1101/gad.6.10.1950. [DOI] [PubMed] [Google Scholar]
- Johnstone R. W., Kerry J. A., Trapani J. A. The human interferon-inducible protein, IFI 16, is a repressor of transcription. J Biol Chem. 1998 Jul 3;273(27):17172–17177. doi: 10.1074/jbc.273.27.17172. [DOI] [PubMed] [Google Scholar]
- Kihm A. J., Hershey J. C., Haystead T. A., Madsen C. S., Owens G. K. Phosphorylation of the rRNA transcription factor upstream binding factor promotes its association with TATA binding protein. Proc Natl Acad Sci U S A. 1998 Dec 8;95(25):14816–14820. doi: 10.1073/pnas.95.25.14816. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Koul D., Lapushin R., Xu H. J., Mills G. B., Gutterman J. U., Choubey D. p202 prevents apoptosis in murine AKR-2B fibroblasts. Biochem Biophys Res Commun. 1998 Jun 18;247(2):379–382. doi: 10.1006/bbrc.1998.8804. [DOI] [PubMed] [Google Scholar]
- Kuhn A., Deppert U., Grummt I. A 140-base-pair repetitive sequence element in the mouse rRNA gene spacer enhances transcription by RNA polymerase I in a cell-free system. Proc Natl Acad Sci U S A. 1990 Oct;87(19):7527–7531. doi: 10.1073/pnas.87.19.7527. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Kuhn A., Grummt I. Dual role of the nucleolar transcription factor UBF: trans-activator and antirepressor. Proc Natl Acad Sci U S A. 1992 Aug 15;89(16):7340–7344. doi: 10.1073/pnas.89.16.7340. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Kuhn A., Voit R., Stefanovsky V., Evers R., Bianchi M., Grummt I. Functional differences between the two splice variants of the nucleolar transcription factor UBF: the second HMG box determines specificity of DNA binding and transcriptional activity. EMBO J. 1994 Jan 15;13(2):416–424. doi: 10.1002/j.1460-2075.1994.tb06276.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Lai J. S., Herr W. Ethidium bromide provides a simple tool for identifying genuine DNA-independent protein associations. Proc Natl Acad Sci U S A. 1992 Aug 1;89(15):6958–6962. doi: 10.1073/pnas.89.15.6958. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Landolfo S., Gariglio M., Gribaudo G., Lembo D. The Ifi 200 genes: an emerging family of IFN-inducible genes. Biochimie. 1998 Aug-Sep;80(8-9):721–728. doi: 10.1016/s0300-9084(99)80025-x. [DOI] [PubMed] [Google Scholar]
- Lembo M., Sacchi C., Zappador C., Bellomo G., Gaboli M., Pandolfi P. P., Gariglio M., Landolfo S. Inhibition of cell proliferation by the interferon-inducible 204 gene, a member of the Ifi 200 cluster. Oncogene. 1998 Mar 26;16(12):1543–1551. doi: 10.1038/sj.onc.1201677. [DOI] [PubMed] [Google Scholar]
- Lengyel P. Biochemistry of interferons and their actions. Annu Rev Biochem. 1982;51:251–282. doi: 10.1146/annurev.bi.51.070182.001343. [DOI] [PubMed] [Google Scholar]
- Maeda Y., Hisatake K., Kondo T., Hanada K., Song C. Z., Nishimura T., Muramatsu M. Mouse rRNA gene transcription factor mUBF requires both HMG-box1 and an acidic tail for nucleolar accumulation: molecular analysis of the nucleolar targeting mechanism. EMBO J. 1992 Oct;11(10):3695–3704. doi: 10.1002/j.1460-2075.1992.tb05454.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Mason S. W., Sander E. E., Grummt I. Identification of a transcript release activity acting on ternary transcription complexes containing murine RNA polymerase I. EMBO J. 1997 Jan 2;16(1):163–172. doi: 10.1093/emboj/16.1.163. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Min W., Ghosh S., Lengyel P. The interferon-inducible p202 protein as a modulator of transcription: inhibition of NF-kappa B, c-Fos, and c-Jun activities. Mol Cell Biol. 1996 Jan;16(1):359–368. doi: 10.1128/mcb.16.1.359. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Mitchell P. J., Wang C., Tjian R. Positive and negative regulation of transcription in vitro: enhancer-binding protein AP-2 is inhibited by SV40 T antigen. Cell. 1987 Sep 11;50(6):847–861. doi: 10.1016/0092-8674(87)90512-5. [DOI] [PubMed] [Google Scholar]
- O'Mahony D. J., Xie W. Q., Smith S. D., Singer H. A., Rothblum L. I. Differential phosphorylation and localization of the transcription factor UBF in vivo in response to serum deprivation. In vitro dephosphorylation of UBF reduces its transactivation properties. J Biol Chem. 1992 Jan 5;267(1):35–38. [PubMed] [Google Scholar]
- Osheim Y. N., Mougey E. B., Windle J., Anderson M., O'Reilly M., Miller O. L., Jr, Beyer A., Sollner-Webb B. Metazoan rDNA enhancer acts by making more genes transcriptionally active. J Cell Biol. 1996 Jun;133(5):943–954. doi: 10.1083/jcb.133.5.943. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Paalman M. H., Henderson S. L., Sollner-Webb B. Stimulation of the mouse rRNA gene promoter by a distal spacer promoter. Mol Cell Biol. 1995 Aug;15(8):4648–4656. doi: 10.1128/mcb.15.8.4648. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Putnam C. D., Copenhaver G. P., Denton M. L., Pikaard C. S. The RNA polymerase I transactivator upstream binding factor requires its dimerization domain and high-mobility-group (HMG) box 1 to bend, wrap, and positively supercoil enhancer DNA. Mol Cell Biol. 1994 Oct;14(10):6476–6488. doi: 10.1128/mcb.14.10.6476. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Schnapp A., Grummt I. Transcription complex formation at the mouse rDNA promoter involves the stepwise association of four transcription factors and RNA polymerase I. J Biol Chem. 1991 Dec 25;266(36):24588–24595. [PubMed] [Google Scholar]
- Schnapp A., Schnapp G., Erny B., Grummt I. Function of the growth-regulated transcription initiation factor TIF-IA in initiation complex formation at the murine ribosomal gene promoter. Mol Cell Biol. 1993 Nov;13(11):6723–6732. doi: 10.1128/mcb.13.11.6723. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Schnapp G., Schnapp A., Rosenbauer H., Grummt I. TIF-IC, a factor involved in both transcription initiation and elongation of RNA polymerase I. EMBO J. 1994 Sep 1;13(17):4028–4035. doi: 10.1002/j.1460-2075.1994.tb06719.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Seither P., Iben S., Grummt I. Mammalian RNA polymerase I exists as a holoenzyme with associated basal transcription factors. J Mol Biol. 1998 Jan 9;275(1):43–53. doi: 10.1006/jmbi.1997.1434. [DOI] [PubMed] [Google Scholar]
- Stark G. R., Kerr I. M., Williams B. R., Silverman R. H., Schreiber R. D. How cells respond to interferons. Annu Rev Biochem. 1998;67:227–264. doi: 10.1146/annurev.biochem.67.1.227. [DOI] [PubMed] [Google Scholar]
- Tannenbaum C. S., Major J., Ohmori Y., Hamilton T. A. A lipopolysaccharide-inducible macrophage gene (D3) is a new member of an interferon-inducible gene cluster and is selectively expressed in mononuclear phagocytes. J Leukoc Biol. 1993 May;53(5):563–568. doi: 10.1002/jlb.53.5.563. [DOI] [PubMed] [Google Scholar]
- Trapani J. A., Dawson M., Apostolidis V. A., Browne K. A. Genomic organization of IFI16, an interferon-inducible gene whose expression is associated with human myeloid cell differentiation: correlation of predicted protein domains with exon organization. Immunogenetics. 1994;40(6):415–424. doi: 10.1007/BF00177824. [DOI] [PubMed] [Google Scholar]
- Voit R., Kuhn A., Sander E. E., Grummt I. Activation of mammalian ribosomal gene transcription requires phosphorylation of the nucleolar transcription factor UBF. Nucleic Acids Res. 1995 Jul 25;23(14):2593–2599. doi: 10.1093/nar/23.14.2593. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Voit R., Schnapp A., Kuhn A., Rosenbauer H., Hirschmann P., Stunnenberg H. G., Grummt I. The nucleolar transcription factor mUBF is phosphorylated by casein kinase II in the C-terminal hyperacidic tail which is essential for transactivation. EMBO J. 1992 Jun;11(6):2211–2218. doi: 10.1002/j.1460-2075.1992.tb05280.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Voit R., Schäfer K., Grummt I. Mechanism of repression of RNA polymerase I transcription by the retinoblastoma protein. Mol Cell Biol. 1997 Aug;17(8):4230–4237. doi: 10.1128/mcb.17.8.4230. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Weber H., Valenzuela D., Lujber G., Gubler M., Weissmann C. Single amino acid changes that render human IFN-alpha 2 biologically active on mouse cells. EMBO J. 1987 Mar;6(3):591–598. doi: 10.1002/j.1460-2075.1987.tb04795.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Weiler S. R., Gooya J. M., Ortiz M., Tsai S., Collins S. J., Keller J. R. D3: a gene induced during myeloid cell differentiation of Linlo c-Kit+ Sca-1(+) progenitor cells. Blood. 1999 Jan 15;93(2):527–536. [PubMed] [Google Scholar]
- Wolffe A. P. Architectural transcription factors. Science. 1994 May 20;264(5162):1100–1101. doi: 10.1126/science.8178167. [DOI] [PubMed] [Google Scholar]
- Xie J., Briggs J. A., Briggs R. C. Human hematopoietic cell specific nuclear protein MNDA interacts with the multifunctional transcription factor YY1 and stimulates YY1 DNA binding. J Cell Biochem. 1998 Sep 15;70(4):489–506. [PubMed] [Google Scholar]
- Zomerdijk J. C., Beckmann H., Comai L., Tjian R. Assembly of transcriptionally active RNA polymerase I initiation factor SL1 from recombinant subunits. Science. 1994 Dec 23;266(5193):2015–2018. doi: 10.1126/science.7801130. [DOI] [PubMed] [Google Scholar]