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. 2025 Feb 28;10(Pt 2):x250143. doi: 10.1107/S2414314625001439

3-(2-Eth­oxy-2-oxoeth­yl)-4,5,6,7,8,9-hexa­hydrocyclo­octa­[d][1,2,3]selena­diazol-3-ium bromide

Dieter Schollmeyer a, Heiner Detert a,*
Editor: M Bolteb
PMCID: PMC11904625  PMID: 40092355

The title compound features a selena­diazole five-membered ring attached to a cyclo­octene ring. A bromine anion is located in the vicinity of the selenium atom [3.0197 (5) Å].

Keywords: crystal structure, selenium, heterocycle, medium-sized ring

Abstract

The title compound, C12H19N2O2Se+·Br, features a selena­diazole five-membered ring attached to a cyclo­octene ring. A bromine anion is located in the vicinity of the selenium atom [3.0197 (5) Å]graphic file with name x-10-x250143-scheme1-3D1.jpg

Structure description

1,2,3-Selena­diazo­les are known as precursors for alkynes, especially strained cyclo­alkynes (Bissinger et al., 1988; Detert & Meier, 1997). Jaffari et al. (1970) reported benzo-annulated selena­diazo­lium salts, and the first 1,2,3-selena­diazo­lium salt was described by Butler & Fox (2001). Recently, N-methyl­ated selena­diazo­les were characterized by us (Schollmeyer & Detert, 2016, 2017).

The mol­ecular structure of the title compound (Fig. 1) is composed of a cyclo­octene ring with a boat-twist conformation, a 1,2,3-selena­diazole ring, an ethyl­acetate unit, and a bromide anion in the vicinity of the selenium atom. The selena­diazole ring is planar with a maximum deviation of 0.018 (3) Å from the mean plane at N2 whereas N3 is slightly below the ring. In spite of the conformational freedom, the ester unit, C12–C17, is almost planar; here the maximum deviation from the mean plane is 0.117 (2) Å at O15. These planes subtend a dihedral angle of 77.24 (14)°. The cyclo­octene ring adopts a distorted boat-chair conformation (Evans & Boeyens, 1988). The bromide ion is located in the vicinity of the selenium atom [3.0197 (5) Å], opposite to the carbonyl group and slightly below the selena­diazole plane [0.5364 (3) Å]. The packing is shown in Fig. 2.

Figure 1.

Figure 1

View (Macrae et al., 2020) of the title compound. Displacement ellipsoids are drawn at the 50% probability level.

Figure 2.

Figure 2

Part of the packing diagram. View along a-axis direction (Spek, 2020).

Synthesis and crystallization

The title compound was prepared by adding ethyl bromo­acetate (2.5 ml) to a solution of cyclo­octeno-1,2,3-selena­diazole (0.9 g, 4 mmol) (Meier & Voigt, 1972) in nitro­methane (12 ml). The mixture was kept for one month at room temperature under exclusion of light. Two isomeric selena­diazo­lium salts in a 2.5:1 ratio were formed (1H-NMR), the main isomer was isolated by evaporation of the solvent and chromatography on silica gel using chloro­form/propanol-2 as eluent. Yield: 0.65 g of the pure title compound (43%), m.p.: 435 K. IR (KBr): 2975, 2912, 2855, 1733, 1711, 1522, 1472, 1447, 1368, 1339, 1240, 1220, 1022 cm−1.1H-NMR (CDCl3, 400 MHz): 5.63 (s, 2 H, N—CH2; 13C-satellites, J = 148 Hz), 4.26, (q, J = 7.5 Hz, OCH2), 3.75 (pseudo-t, 2 H, 10-CH2), 3.17 (pseudo-t, 2 H, 5-CH2), 1.90 (qui, 2 H, 9-CH2), 1.78 (qui, 2 H, 6-CH2), 1.40 (m, 4 H, CH2), 1.26 ppm (t, 3 H, CH3). NOE: Irradiation into 5.63: positive NOE at 3.17, 1.78 ppm. 175.6 (C11, Se-satellites, 1JC–Se = 160 Hz), 164.0 (C=O), 154.4 (C-4) 64.4 (OCH2), 61.0 (NCH2), 31.2 (C-9), 30.5 (C-10), 28.2 (C-6), 26.8 (C-5), 25.6 (C-7), 24.8 (C-7), 13.9 (CH3) ppm. Numbering of atoms according to scheme 1. MS: (EI): 685 (19%, Se2Br-isotope pattern), (C12H19O2N2Se)2Br+); 381 (4%, M+).

Refinement

Crystal data, data collection and structure refinement details are summarized in Table 1.

Table 1. Experimental details.

Crystal data
Chemical formula C12H19N2O2Se+·Br
M r 382.16
Crystal system, space group Triclinic, PInline graphic
Temperature (K) 120
a, b, c (Å) 8.4924 (7), 9.3927 (7), 9.7799 (8)
α, β, γ (°) 71.379 (6), 86.439 (7), 74.119 (6)
V3) 710.78 (10)
Z 2
Radiation type Mo Kα
μ (mm−1) 5.45
Crystal size (mm) 0.37 × 0.35 × 0.18
 
Data collection
Diffractometer Stoe IPDS 2T
Absorption correction Integration [X-RED32 (Stoe, & Cie, 2020), absorption correction by Gaussian integration, analogous to Coppens (1970)]
Tmin, Tmax 0.163, 0.405
No. of measured, independent and observed [I > 2σ(I)] reflections 6548, 3370, 3085
R int 0.030
(sin θ/λ)max−1) 0.659
 
Refinement
R[F2 > 2σ(F2)], wR(F2), S 0.035, 0.096, 1.10
No. of reflections 3370
No. of parameters 164
H-atom treatment H-atom parameters constrained
Δρmax, Δρmin (e Å−3) 1.39, −0.84

Computer programs: X-AREA WinXpose, Recipe, Integrate (Stoe & Cie, 2020), SHELXT2014 (Sheldrick, 2015a), SHELXL2019/3 (Sheldrick, 2015b), PLATON (Spek, 2020) and Mercury (Macrae et al., 2020).

Supplementary Material

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S2414314625001439/bt4164sup1.cif

x-10-x250143-sup1.cif (233.9KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S2414314625001439/bt4164Isup2.hkl

x-10-x250143-Isup2.hkl (268.9KB, hkl)
x-10-x250143-Isup3.cml (5.5KB, cml)

Supporting information file. DOI: 10.1107/S2414314625001439/bt4164Isup3.cml

CCDC reference: 2424352

Additional supporting information: crystallographic information; 3D view; checkCIF report

full crystallographic data

3-(2-Ethoxy-2-oxoethyl)-4,5,6,7,8,9-hexahydrocycloocta[d][1,2,3]selenadiazol-3-ium bromide . Crystal data

C12H19N2O2Se+·Br F(000) = 380
Mr = 382.16 Dx = 1.786 Mg m3
Triclinic, P1 Melting point: 435 K
a = 8.4924 (7) Å Mo Kα radiation, λ = 0.71073 Å
b = 9.3927 (7) Å Cell parameters from 10409 reflections
c = 9.7799 (8) Å θ = 2.5–28.4°
α = 71.379 (6)° µ = 5.45 mm1
β = 86.439 (7)° T = 120 K
γ = 74.119 (6)° Block, colorless
V = 710.78 (10) Å3 0.37 × 0.35 × 0.18 mm
Z = 2

3-(2-Ethoxy-2-oxoethyl)-4,5,6,7,8,9-hexahydrocycloocta[d][1,2,3]selenadiazol-3-ium bromide . Data collection

Stoe IPDS 2T diffractometer 3370 independent reflections
Radiation source: sealed X-ray tube, 12x0.4mm long-fine focus 3085 reflections with I > 2σ(I)
Detector resolution: 6.67 pixels mm-1 Rint = 0.030
rotation method, ω scans θmax = 27.9°, θmin = 2.5°
Absorption correction: integration [X-Red32 (Stoe, & Cie, 2020), absorption correction by Gaussian integration, analogous to Coppens (1970)] h = −9→11
Tmin = 0.163, Tmax = 0.405 k = −12→12
6548 measured reflections l = −12→12

3-(2-Ethoxy-2-oxoethyl)-4,5,6,7,8,9-hexahydrocycloocta[d][1,2,3]selenadiazol-3-ium bromide . Refinement

Refinement on F2 Primary atom site location: dual
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.035 H-atom parameters constrained
wR(F2) = 0.096 w = 1/[σ2(Fo2) + (0.0549P)2 + 1.110P] where P = (Fo2 + 2Fc2)/3
S = 1.10 (Δ/σ)max = 0.001
3370 reflections Δρmax = 1.39 e Å3
164 parameters Δρmin = −0.84 e Å3
0 restraints

3-(2-Ethoxy-2-oxoethyl)-4,5,6,7,8,9-hexahydrocycloocta[d][1,2,3]selenadiazol-3-ium bromide . Special details

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Hydrogen atoms were refined as riding on their parent atoms with C—H = 0.99 Å for methylene groups and with C—H = 0.98 Å for methyl groups. Isotropic displacement parameters of the H atoms were set to 1.2Ueq(C) or 1.5Ueq(Cmethyl).

3-(2-Ethoxy-2-oxoethyl)-4,5,6,7,8,9-hexahydrocycloocta[d][1,2,3]selenadiazol-3-ium bromide . Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Br1 0.49934 (4) 0.22173 (3) 1.21107 (3) 0.02302 (10)
Se1 0.34890 (3) 0.21865 (3) 0.94061 (3) 0.01662 (10)
O14 0.1838 (3) 0.4488 (2) 0.4557 (2) 0.0206 (4)
O15 0.0967 (3) 0.2826 (2) 0.3758 (2) 0.0178 (4)
N2 0.2602 (3) 0.1785 (3) 0.7980 (3) 0.0173 (5)
N3 0.3497 (3) 0.2043 (3) 0.6843 (3) 0.0144 (4)
C4 0.4827 (3) 0.2615 (3) 0.6848 (3) 0.0143 (5)
C5 0.5890 (3) 0.2910 (3) 0.5563 (3) 0.0164 (5)
H5A 0.626019 0.384490 0.548184 0.020*
H5B 0.522922 0.313715 0.468181 0.020*
C6 0.7403 (4) 0.1532 (3) 0.5634 (3) 0.0187 (5)
H6A 0.704205 0.056317 0.590697 0.022*
H6B 0.785283 0.168197 0.465499 0.022*
C7 0.8790 (3) 0.1298 (3) 0.6690 (3) 0.0197 (6)
H7A 0.977802 0.055683 0.648121 0.024*
H7B 0.905037 0.230735 0.650026 0.024*
C8 0.8431 (4) 0.0691 (3) 0.8295 (3) 0.0191 (5)
H8A 0.940889 −0.013424 0.878496 0.023*
H8B 0.752247 0.019621 0.838569 0.023*
C9 0.7976 (3) 0.1894 (3) 0.9106 (3) 0.0187 (5)
H9A 0.893461 0.229792 0.911700 0.022*
H9B 0.776542 0.135081 1.012018 0.022*
C10 0.6482 (3) 0.3294 (3) 0.8502 (3) 0.0163 (5)
H10A 0.614406 0.385169 0.922162 0.020*
H10B 0.679218 0.402734 0.761909 0.020*
C11 0.5076 (3) 0.2798 (3) 0.8151 (3) 0.0139 (5)
C12 0.2965 (3) 0.1714 (3) 0.5601 (3) 0.0167 (5)
H12A 0.237092 0.089818 0.594280 0.020*
H12B 0.393413 0.131917 0.507588 0.020*
C13 0.1851 (3) 0.3189 (3) 0.4589 (3) 0.0161 (5)
C16 −0.0031 (4) 0.4150 (4) 0.2620 (4) 0.0263 (7)
H16A 0.064370 0.484369 0.207894 0.032*
H16B −0.094754 0.476150 0.304881 0.032*
C17 −0.0676 (4) 0.3498 (4) 0.1638 (4) 0.0245 (6)
H17A −0.131725 0.435342 0.084350 0.037*
H17B −0.137472 0.284484 0.217717 0.037*
H17C 0.024140 0.286559 0.124624 0.037*

3-(2-Ethoxy-2-oxoethyl)-4,5,6,7,8,9-hexahydrocycloocta[d][1,2,3]selenadiazol-3-ium bromide . Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Br1 0.02640 (17) 0.02727 (17) 0.01503 (16) −0.00549 (12) 0.00133 (12) −0.00775 (12)
Se1 0.01565 (15) 0.02022 (16) 0.01349 (16) −0.00509 (11) 0.00309 (10) −0.00490 (11)
O14 0.0246 (10) 0.0171 (9) 0.0214 (10) −0.0071 (8) −0.0009 (8) −0.0062 (8)
O15 0.0195 (10) 0.0160 (9) 0.0174 (10) −0.0055 (8) −0.0041 (8) −0.0030 (8)
N2 0.0151 (11) 0.0218 (11) 0.0152 (11) −0.0053 (9) 0.0007 (9) −0.0056 (9)
N3 0.0135 (10) 0.0147 (10) 0.0158 (11) −0.0046 (8) 0.0007 (8) −0.0050 (8)
C4 0.0124 (11) 0.0122 (11) 0.0166 (12) −0.0033 (9) 0.0003 (9) −0.0021 (9)
C5 0.0161 (12) 0.0181 (12) 0.0147 (13) −0.0068 (10) 0.0014 (10) −0.0032 (10)
C6 0.0173 (12) 0.0230 (13) 0.0172 (13) −0.0063 (11) 0.0046 (10) −0.0081 (11)
C7 0.0139 (12) 0.0205 (13) 0.0232 (15) −0.0033 (10) 0.0026 (11) −0.0062 (11)
C8 0.0179 (13) 0.0187 (13) 0.0173 (13) −0.0028 (10) −0.0016 (10) −0.0027 (10)
C9 0.0163 (12) 0.0225 (13) 0.0173 (13) −0.0046 (10) −0.0031 (10) −0.0060 (11)
C10 0.0178 (12) 0.0155 (12) 0.0169 (13) −0.0060 (10) −0.0007 (10) −0.0053 (10)
C11 0.0149 (12) 0.0117 (11) 0.0138 (12) −0.0025 (9) 0.0022 (9) −0.0037 (9)
C12 0.0184 (13) 0.0168 (12) 0.0173 (13) −0.0061 (10) 0.0002 (10) −0.0074 (10)
C13 0.0170 (12) 0.0194 (12) 0.0145 (12) −0.0088 (10) 0.0033 (10) −0.0059 (10)
C16 0.0371 (17) 0.0187 (13) 0.0204 (15) −0.0025 (12) −0.0127 (13) −0.0043 (11)
C17 0.0245 (15) 0.0270 (15) 0.0213 (15) −0.0055 (12) −0.0067 (12) −0.0064 (12)

3-(2-Ethoxy-2-oxoethyl)-4,5,6,7,8,9-hexahydrocycloocta[d][1,2,3]selenadiazol-3-ium bromide . Geometric parameters (Å, º)

Se1—N2 1.811 (3) C8—C9 1.533 (4)
Se1—C11 1.850 (3) C8—H8A 0.9900
O14—C13 1.208 (3) C8—H8B 0.9900
O15—C13 1.316 (3) C9—C10 1.541 (4)
O15—C16 1.469 (4) C9—H9A 0.9900
N2—N3 1.303 (3) C9—H9B 0.9900
N3—C4 1.378 (3) C10—C11 1.490 (4)
N3—C12 1.470 (4) C10—H10A 0.9900
C4—C11 1.375 (4) C10—H10B 0.9900
C4—C5 1.498 (4) C12—C13 1.523 (4)
C5—C6 1.541 (4) C12—H12A 0.9900
C5—H5A 0.9900 C12—H12B 0.9900
C5—H5B 0.9900 C16—C17 1.491 (4)
C6—C7 1.538 (4) C16—H16A 0.9900
C6—H6A 0.9900 C16—H16B 0.9900
C6—H6B 0.9900 C17—H17A 0.9800
C7—C8 1.532 (4) C17—H17B 0.9800
C7—H7A 0.9900 C17—H17C 0.9800
C7—H7B 0.9900
N2—Se1—C11 89.04 (12) C10—C9—H9A 108.2
C13—O15—C16 115.5 (2) C8—C9—H9B 108.2
N3—N2—Se1 109.05 (18) C10—C9—H9B 108.2
N2—N3—C4 120.2 (2) H9A—C9—H9B 107.4
N2—N3—C12 115.6 (2) C11—C10—C9 111.8 (2)
C4—N3—C12 124.2 (2) C11—C10—H10A 109.3
C11—C4—N3 112.7 (2) C9—C10—H10A 109.3
C11—C4—C5 125.8 (2) C11—C10—H10B 109.3
N3—C4—C5 121.5 (2) C9—C10—H10B 109.3
C4—C5—C6 113.5 (2) H10A—C10—H10B 107.9
C4—C5—H5A 108.9 C4—C11—C10 124.5 (2)
C6—C5—H5A 108.9 C4—C11—Se1 109.0 (2)
C4—C5—H5B 108.9 C10—C11—Se1 126.3 (2)
C6—C5—H5B 108.9 N3—C12—C13 110.1 (2)
H5A—C5—H5B 107.7 N3—C12—H12A 109.6
C7—C6—C5 115.8 (2) C13—C12—H12A 109.6
C7—C6—H6A 108.3 N3—C12—H12B 109.6
C5—C6—H6A 108.3 C13—C12—H12B 109.6
C7—C6—H6B 108.3 H12A—C12—H12B 108.2
C5—C6—H6B 108.3 O14—C13—O15 126.4 (3)
H6A—C6—H6B 107.4 O14—C13—C12 123.5 (3)
C8—C7—C6 115.6 (2) O15—C13—C12 110.1 (2)
C8—C7—H7A 108.4 O15—C16—C17 107.3 (2)
C6—C7—H7A 108.4 O15—C16—H16A 110.3
C8—C7—H7B 108.4 C17—C16—H16A 110.3
C6—C7—H7B 108.4 O15—C16—H16B 110.3
H7A—C7—H7B 107.4 C17—C16—H16B 110.3
C7—C8—C9 116.7 (2) H16A—C16—H16B 108.5
C7—C8—H8A 108.1 C16—C17—H17A 109.5
C9—C8—H8A 108.1 C16—C17—H17B 109.5
C7—C8—H8B 108.1 H17A—C17—H17B 109.5
C9—C8—H8B 108.1 C16—C17—H17C 109.5
H8A—C8—H8B 107.3 H17A—C17—H17C 109.5
C8—C9—C10 116.3 (2) H17B—C17—H17C 109.5
C8—C9—H9A 108.2
C11—Se1—N2—N3 2.47 (19) C5—C4—C11—C10 −1.3 (4)
Se1—N2—N3—C4 −3.2 (3) N3—C4—C11—Se1 0.0 (3)
Se1—N2—N3—C12 177.90 (18) C5—C4—C11—Se1 −177.0 (2)
N2—N3—C4—C11 2.2 (4) C9—C10—C11—C4 −87.9 (3)
C12—N3—C4—C11 −179.0 (2) C9—C10—C11—Se1 87.2 (3)
N2—N3—C4—C5 179.4 (2) N2—Se1—C11—C4 −1.4 (2)
C12—N3—C4—C5 −1.8 (4) N2—Se1—C11—C10 −177.1 (2)
C11—C4—C5—C6 82.8 (3) N2—N3—C12—C13 93.4 (3)
N3—C4—C5—C6 −94.1 (3) C4—N3—C12—C13 −85.5 (3)
C4—C5—C6—C7 −74.3 (3) C16—O15—C13—O14 4.8 (4)
C5—C6—C7—C8 71.2 (3) C16—O15—C13—C12 −173.6 (2)
C6—C7—C8—C9 −102.0 (3) N3—C12—C13—O14 21.8 (4)
C7—C8—C9—C10 57.4 (3) N3—C12—C13—O15 −159.8 (2)
C8—C9—C10—C11 45.7 (3) C13—O15—C16—C17 169.4 (3)
N3—C4—C11—C10 175.8 (2)

References

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  2. Butler, R. N. & Fox, A. (2001). J. Chem. Soc. Perkin Trans. 1, pp. 394–397.
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  14. Stoe & Cie (2020). X-RED and X-AREA. Stoe & Cie, Darmstadt, Germany.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S2414314625001439/bt4164sup1.cif

x-10-x250143-sup1.cif (233.9KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S2414314625001439/bt4164Isup2.hkl

x-10-x250143-Isup2.hkl (268.9KB, hkl)
x-10-x250143-Isup3.cml (5.5KB, cml)

Supporting information file. DOI: 10.1107/S2414314625001439/bt4164Isup3.cml

CCDC reference: 2424352

Additional supporting information: crystallographic information; 3D view; checkCIF report


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