A layered crystal structure built up from alternating cationic and (anionic + water of crystallization) supramolecular planes parallel to (100) is described for the title hydrated salt.
Keywords: crystal structure, benzimidazole, gallic acid, hydrate, hydrogen bonds
Abstract
The characterized organic trihydrate title salt, C17H17N4+·C7H5O5−·3H2O or (HL)+(Gal)−·3H2O, with L = 1,3-bis(1H-benzimidazol-2-yl)propane (C17H16N4) and HGal = 3,4,5-trihydroxybenzoic acid (gallic acid, C7H6O5), crystallizes with two formulas per asymmetric unit. One-half of the cations in the crystal feature a bent shape, with the central propyl chain having a gauche conformation, and the other half is nearly linear, with a trans propyl chain. Both cations form two independent herringbone layers in the crystal, which allow efficient π–π interactions between aromatic rings of the benzimidazole moieties. These layers are parallel to (100), and anions and water molecules of crystallization intercalate between these cationic planes. All potential donor groups for hydrogen bonding (NH and OH groups) actually form hydrogen bonds, ensuring a good cohesion between layers of cations and anions, stacked along [100].
Structure description
The title salt was isolated during an exploratory synthetic effort aiming to describe the ability of gallic acid (3,4,5-trihydroxybenzoic acid, HGal) to co-crystallize with imidazole, benzimidazole derivatives and related bases. According to the ΔpKa rule, the formation of true cocrystals rather than salts is quite unpredictable for such acid–base pairs: with pKa ≃ 5.3 for the conjugate acid of benzimidazole and pKa ≃ 4.5 for gallic acid, ΔpKa ≃ 0.8 falls in the grey zone of the ΔpKa rule (Cruz-Cabeza, 2012 ▸). Indeed cocrystals based on HGal were reported, for example with metronidazole (Zheng et al., 2019 ▸) or penciclovir (Yuan et al., 2020 ▸), while a gallate salt was obtained with 2-methyl-benzimidazole (Sosa-Rivadeneyra et al., 2024 ▸). We also reported recently the structure of a salt cocrystal in which HGal partially transfers protons to a bis-benzimidazole compound (Palacios Rodríguez et al., 2023 ▸). The herein reported structure is closely related to this salt cocrystal, as it represents the salt part of the salt cocrystal.
The chemical formula of the title compound is (HL)+(Gal)−·3H2O where L is 1,3-bis(1H-benzimidazol-2-yl)propane. The asymmetric unit contains twice this formula (Z′ = 2; Fig. 1 ▸), with all molecules placed in general positions. This is probably a consequence of the stabilization of two conformers for the cations HL+. The first independent cation, C1–C17, displays an angular shape, with the central propyl chain having a gauche conformation [C2—C3—C4—C5 = −69.39 (16)°]. The dihedral angle between benzimidazole rings in this cation is 86.50 (2)°. In contrast, the other cation, C18—C34, is nearly planar, with a trans propyl chain [C19—C20—C21—C22 = −177.07 (19)°], and a dihedral angle of 4.55 (6)° between benzimidazole rings. Gallate ions also display different conformations, mainly for the carboxylic group, which is twisted by 14.34 (4) or 48.75 (5)° with respect to the benzene ring.
Figure 1.
The molecular structure (asymmetric unit), with displacement ellipsoids at the 30% probability level.
Both cations are arranged in such a way that independent two-dimensional patterns are formed, favouring π–π contacts. Gauche cations form a herringbone pattern, characterized by aromatic rings giving face-to-face interactions with separations of 3.608 (1) and 3.674 (1) Å (Fig. 2 ▸, top). These cations are segregated in planes parallel to (100). Another herringbone plane is formed by trans-conformed cations, which is parallel to the previous one, and displays a more acute stepper angle (Fig. 2 ▸, bottom). In this plane, short π–π contacts range from 3.580 (1) to 3.646 (1) Å. Gallate anions and water molecules are sandwiched between gauche- and trans-cation layers (Fig. 3 ▸). The resulting crystal structure, based on charged supramolecular planes stacked along the largest unit cell axis, is entirely different from that observed for (HL+·Gal−)2·L·(ethyl acetate)2.94, in which the supramolecular structure is cylindrical and no π–π contacts stabilize the structure (Palacios Rodríguez et al., 2023 ▸). This could be a direct consequence of the solvent used for crystallization: (HL+·Gal−)2·L·(ethyl acetate)2.94 was crystallized from ethyl acetate, a poor donor/acceptor for hydrogen bonding, while the title compound (HL)+(Gal)−·3H2O was obtained from a methanol solution. The insertion a water molecules in the structure is attributed to the fact that non-dried methanol was used. Moreover, with such non-controlled experimental conditions, it has been reported that the formation of pharmaceutical cocrystal hydrates can be obtained under conditions of high relative humidity (Karki et al., 2007 ▸).
Figure 2.
Herringbone arrangements observed for HL+ cations in the crystal, with shortest π–π separations between aromatic rings. The top panel is for cations having a bent shape, due to the gauche conformation of the central propyl chain, and the bottom panel is for linear cations featuring a trans propyl chain. Both projections are nearly normal to [100].
Figure 3.
The crystal packing, as viewed down crystallographic c axis, emphasizing the layered structure, with alternating cationic and anionic planes. Water molecules are shown using a ball-and-stick representation to emphasize their positions between cationic planes.
The presence of H2O in the herein reported structure is essential for crystal cohesion. Indeed, all NH and OH groups in the crystal behave as donors for hydrogen bonding, forming an extensive three-dimensional network of hydrogen bonds (Table 1 ▸). Almost all hydrogen bonds are significant in terms of stabilization energy: 22 of 24 contacts have a D—H⋯A angle greater than 150°, and H⋯A separations range from 1.71 (2) to 2.330 (18) Å. According to the ‘graph-sets’ tool available in Mercury (Macrae et al., 2020 ▸), all ring motifs are of level 3 (or higher) and include between three and ten molecules. The smallest motif,
(12), involves one cation, one anion and one water molecule, and rings as large as
(68) are formed, involving three neighbouring supramolecular layers in the crystal.
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N1—H1⋯O1i | 0.818 (18) | 2.330 (18) | 3.0706 (17) | 150.9 (16) |
| N3—H3⋯O12 | 0.885 (17) | 1.830 (18) | 2.6968 (17) | 166.0 (16) |
| N4—H4⋯O6 | 0.878 (17) | 1.884 (18) | 2.7290 (15) | 160.9 (16) |
| N5—H5⋯O9 | 0.87 (2) | 2.18 (2) | 3.0248 (17) | 162.9 (18) |
| N7—H7A⋯O7ii | 0.879 (19) | 1.84 (2) | 2.7045 (15) | 165.7 (18) |
| N8—H8A⋯O15 | 0.919 (19) | 1.78 (2) | 2.676 (2) | 165.3 (18) |
| O3—H3C⋯O8iii | 0.90 (2) | 1.95 (2) | 2.7201 (14) | 142.6 (19) |
| O4—H4C⋯O6 | 0.93 (2) | 2.18 (2) | 2.9509 (14) | 139.8 (19) |
| O5—H5A⋯O13 | 0.92 (2) | 1.71 (2) | 2.6263 (14) | 173 (2) |
| O8—H8B⋯O2iv | 0.87 (2) | 1.75 (2) | 2.6171 (13) | 174 (2) |
| O9—H9A⋯O14 | 0.82 (2) | 1.81 (2) | 2.6193 (15) | 168.4 (19) |
| O10—H10A⋯O13 | 0.86 (2) | 1.83 (2) | 2.6808 (13) | 168 (2) |
| O11—H11A⋯O6 | 0.88 (3) | 2.04 (3) | 2.9148 (17) | 174 (3) |
| O11—H11B⋯O16v | 0.96 (3) | 1.91 (3) | 2.865 (2) | 175 (3) |
| O12—H12A⋯O1i | 0.95 (3) | 1.86 (3) | 2.7796 (17) | 162 (2) |
| O12—H12B⋯O3vi | 0.83 (3) | 2.14 (3) | 2.9254 (18) | 158 (2) |
| O13—H13A⋯N2 | 0.923 (19) | 1.81 (2) | 2.7348 (15) | 175.0 (17) |
| O13—H13B⋯O7ii | 0.856 (19) | 1.89 (2) | 2.7249 (13) | 165.5 (18) |
| O14—H14A⋯O1vii | 0.94 (3) | 1.96 (3) | 2.8608 (18) | 160 (2) |
| O14—H14B⋯O11ii | 0.97 (3) | 1.85 (3) | 2.814 (2) | 177 (2) |
| O15—H15A⋯O2viii | 0.77 (5) | 2.10 (5) | 2.865 (2) | 171 (5) |
| O15—H15B⋯O16 | 0.86 (5) | 1.91 (5) | 2.742 (2) | 165 (4) |
| O16—H16A⋯O4ix | 0.91 (3) | 2.22 (3) | 3.0444 (18) | 150 (2) |
| O16—H16B⋯N6 | 1.01 (3) | 1.80 (3) | 2.800 (2) | 167 (2) |
Symmetry codes: (i)
; (ii)
; (iii)
; (iv)
; (v)
; (vi)
; (vii)
; (viii)
; (ix)
.
Synthesis and crystallization
A solution of 1,3-bis(1H-benzo[d]imidazol-2-yl)propane (L, 12.4 mg, 0.045 mmol) and gallic acid (HGal, 7.6 mg, 0.045 mmol) in 10 ml of methanol was heated at boiling temperature until dissolution of the reactants. After filtration, the solution was left at room temperature for slow evaporation of the solvent, giving brown crystals suitable for single-crystal X-ray diffraction analysis.
Refinement
Crystal data, data collection and structure refinement details are summarized in Table 2 ▸.
Table 2. Experimental details.
| Crystal data | |
| Chemical formula | C17H17N4+·C7H5O5−·3H2O |
| M r | 500.50 |
| Crystal system, space group | Monoclinic, P21/c |
| Temperature (K) | 296 |
| a, b, c (Å) | 19.1096 (3), 13.69762 (18), 18.5399 (2) |
| β (°) | 96.4031 (12) |
| V (Å3) | 4822.66 (11) |
| Z | 8 |
| Radiation type | Mo Kα |
| μ (mm−1) | 0.11 |
| Crystal size (mm) | 0.66 × 0.49 × 0.12 |
| Data collection | |
| Diffractometer | Xcalibur, Atlas, Gemini |
| Absorption correction | Multi-scan (CrysAlis PRO; Rigaku OD, 2022 ▸) |
| Tmin, Tmax | 0.906, 1.000 |
| No. of measured, independent and observed [I > 2σ(I)] reflections | 115888, 14720, 10544 |
| R int | 0.077 |
| (sin θ/λ)max (Å−1) | 0.714 |
| Refinement | |
| R[F2 > 2σ(F2)], wR(F2), S | 0.049, 0.145, 1.04 |
| No. of reflections | 14720 |
| No. of parameters | 722 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.54, −0.29 |
Supplementary Material
Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S2414314625002561/bt4166sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S2414314625002561/bt4166Isup2.hkl
Supporting information file. DOI: 10.1107/S2414314625002561/bt4166Isup3.cml
CCDC reference: 2432736
Additional supporting information: crystallographic information; 3D view; checkCIF report
full crystallographic data
2-[3-(1H-Benzimidazol-2-yl)propyl]-1H-benzimidazol-3-ium 3,4,5-trihydroxybenzoate trihydrate . Crystal data
| C17H17N4+·C7H5O5−·3H2O | F(000) = 2112 |
| Mr = 500.50 | Dx = 1.379 Mg m−3 |
| Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
| a = 19.1096 (3) Å | Cell parameters from 34690 reflections |
| b = 13.69762 (18) Å | θ = 1.8–32.0° |
| c = 18.5399 (2) Å | µ = 0.11 mm−1 |
| β = 96.4031 (12)° | T = 296 K |
| V = 4822.66 (11) Å3 | Trapezoid, brown |
| Z = 8 | 0.66 × 0.49 × 0.12 mm |
2-[3-(1H-Benzimidazol-2-yl)propyl]-1H-benzimidazol-3-ium 3,4,5-trihydroxybenzoate trihydrate . Data collection
| Xcalibur, Atlas, Gemini diffractometer | 14720 independent reflections |
| Radiation source: Sealed X-ray tube | 10544 reflections with I > 2σ(I) |
| Detector resolution: 10.5564 pixels mm-1 | Rint = 0.077 |
| ω scans | θmax = 30.5°, θmin = 1.8° |
| Absorption correction: multi-scan (CrysAlisPro; Rigaku OD, 2022) | h = −27→27 |
| Tmin = 0.906, Tmax = 1.000 | k = −19→19 |
| 115888 measured reflections | l = −26→26 |
2-[3-(1H-Benzimidazol-2-yl)propyl]-1H-benzimidazol-3-ium 3,4,5-trihydroxybenzoate trihydrate . Refinement
| Refinement on F2 | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: mixed |
| R[F2 > 2σ(F2)] = 0.049 | H atoms treated by a mixture of independent and constrained refinement |
| wR(F2) = 0.145 | w = 1/[σ2(Fo2) + (0.0739P)2 + 0.6719P] where P = (Fo2 + 2Fc2)/3 |
| S = 1.04 | (Δ/σ)max = 0.001 |
| 14720 reflections | Δρmax = 0.54 e Å−3 |
| 722 parameters | Δρmin = −0.29 e Å−3 |
| 0 restraints | Extinction correction: SHELXL-2019/3 (Sheldrick, 2015b), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
| 0 constraints | Extinction coefficient: 0.00053 (19) |
| Primary atom site location: dual |
2-[3-(1H-Benzimidazol-2-yl)propyl]-1H-benzimidazol-3-ium 3,4,5-trihydroxybenzoate trihydrate . Special details
| Refinement. All O- and N-bonded H atoms were found in difference maps and refined with free coordinates, while C-bonded H atoms were placed in calculated positions. H atoms were refined with calculated isotropic displacement parameters, using Uiso(H) = xUeq(parent atoms), x = 1.5 if the parent atom is O, and x = 1.2 otherwise. No geometric restraints were applied, in order to obtain unbiased dimensions for hydrogen bonds. |
2-[3-(1H-Benzimidazol-2-yl)propyl]-1H-benzimidazol-3-ium 3,4,5-trihydroxybenzoate trihydrate . Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| N1 | 0.55021 (6) | 0.85336 (9) | 0.51878 (6) | 0.0410 (3) | |
| H1 | 0.5912 (10) | 0.8474 (13) | 0.5106 (10) | 0.049* | |
| N2 | 0.43524 (6) | 0.82506 (8) | 0.51117 (6) | 0.0372 (2) | |
| N3 | 0.52713 (6) | 0.73150 (9) | 0.23807 (6) | 0.0376 (2) | |
| H3 | 0.5667 (9) | 0.7051 (12) | 0.2585 (9) | 0.045* | |
| N4 | 0.41720 (6) | 0.77296 (8) | 0.21795 (6) | 0.0369 (2) | |
| H4 | 0.3718 (9) | 0.7759 (12) | 0.2215 (9) | 0.044* | |
| C1 | 0.49459 (7) | 0.80468 (10) | 0.48456 (7) | 0.0354 (3) | |
| C2 | 0.50350 (7) | 0.73891 (11) | 0.42227 (7) | 0.0414 (3) | |
| H2A | 0.533825 | 0.685033 | 0.439461 | 0.050* | |
| H2B | 0.526999 | 0.774747 | 0.386800 | 0.050* | |
| C3 | 0.43522 (8) | 0.69805 (11) | 0.38527 (7) | 0.0414 (3) | |
| H3A | 0.401692 | 0.750812 | 0.375210 | 0.050* | |
| H3B | 0.415691 | 0.652436 | 0.417694 | 0.050* | |
| C4 | 0.44582 (8) | 0.64570 (10) | 0.31390 (7) | 0.0401 (3) | |
| H4A | 0.483627 | 0.598510 | 0.322936 | 0.048* | |
| H4B | 0.403179 | 0.610461 | 0.296658 | 0.048* | |
| C5 | 0.46305 (7) | 0.71502 (10) | 0.25702 (7) | 0.0355 (3) | |
| C6 | 0.52320 (7) | 0.80228 (10) | 0.18440 (7) | 0.0363 (3) | |
| C7 | 0.57440 (8) | 0.84553 (12) | 0.14697 (8) | 0.0472 (3) | |
| H7 | 0.621668 | 0.828365 | 0.155748 | 0.057* | |
| C8 | 0.55114 (10) | 0.91515 (12) | 0.09623 (9) | 0.0534 (4) | |
| H8 | 0.583527 | 0.945422 | 0.069696 | 0.064* | |
| C9 | 0.48050 (10) | 0.94136 (12) | 0.08362 (8) | 0.0533 (4) | |
| H9 | 0.467233 | 0.989058 | 0.049086 | 0.064* | |
| C10 | 0.42940 (9) | 0.89916 (11) | 0.12051 (8) | 0.0465 (3) | |
| H10 | 0.382221 | 0.916829 | 0.111873 | 0.056* | |
| C11 | 0.45284 (7) | 0.82876 (10) | 0.17126 (7) | 0.0361 (3) | |
| C12 | 0.52597 (7) | 0.91080 (10) | 0.57163 (7) | 0.0386 (3) | |
| C13 | 0.55887 (9) | 0.97515 (13) | 0.62200 (9) | 0.0538 (4) | |
| H13 | 0.607032 | 0.987016 | 0.625226 | 0.065* | |
| C14 | 0.51623 (11) | 1.02099 (13) | 0.66740 (9) | 0.0595 (4) | |
| H14 | 0.536547 | 1.064161 | 0.702378 | 0.071* | |
| C15 | 0.44410 (10) | 1.00457 (12) | 0.66236 (8) | 0.0529 (4) | |
| H15 | 0.417313 | 1.037534 | 0.693492 | 0.063* | |
| C16 | 0.41135 (8) | 0.94012 (11) | 0.61192 (8) | 0.0439 (3) | |
| H16 | 0.363096 | 0.928962 | 0.608597 | 0.053* | |
| C17 | 0.45356 (7) | 0.89261 (10) | 0.56630 (7) | 0.0349 (3) | |
| N5 | 0.09472 (7) | 0.38806 (10) | 0.36023 (8) | 0.0495 (3) | |
| H5 | 0.1403 (11) | 0.3806 (14) | 0.3680 (10) | 0.059* | |
| N6 | −0.01011 (7) | 0.45637 (11) | 0.36410 (8) | 0.0521 (3) | |
| N7 | 0.10001 (7) | 0.85178 (10) | 0.56524 (7) | 0.0456 (3) | |
| H7A | 0.1453 (10) | 0.8453 (13) | 0.5791 (10) | 0.055* | |
| N8 | −0.00373 (7) | 0.80897 (10) | 0.51594 (8) | 0.0483 (3) | |
| H8A | −0.0379 (10) | 0.7772 (14) | 0.4859 (10) | 0.058* | |
| C18 | 0.06447 (8) | 0.78607 (11) | 0.52270 (8) | 0.0455 (3) | |
| C19 | 0.09867 (9) | 0.70444 (14) | 0.48780 (12) | 0.0624 (5) | |
| H19A | 0.132165 | 0.674085 | 0.524166 | 0.075* | |
| H19B | 0.125282 | 0.731627 | 0.450975 | 0.075* | |
| C20 | 0.05109 (8) | 0.62524 (12) | 0.45272 (9) | 0.0492 (3) | |
| H20A | 0.019172 | 0.652790 | 0.413636 | 0.059* | |
| H20B | 0.023248 | 0.597311 | 0.488226 | 0.059* | |
| C21 | 0.09585 (10) | 0.54661 (15) | 0.42316 (14) | 0.0730 (6) | |
| H21A | 0.125815 | 0.577390 | 0.390850 | 0.088* | |
| H21B | 0.126381 | 0.519348 | 0.463457 | 0.088* | |
| C22 | 0.05788 (8) | 0.46473 (12) | 0.38334 (9) | 0.0488 (3) | |
| C23 | 0.04746 (8) | 0.32482 (11) | 0.32295 (8) | 0.0448 (3) | |
| C24 | 0.05564 (9) | 0.23748 (13) | 0.28724 (10) | 0.0566 (4) | |
| H24 | 0.099755 | 0.209510 | 0.285394 | 0.068* | |
| C25 | −0.00474 (10) | 0.19407 (14) | 0.25462 (11) | 0.0628 (4) | |
| H25 | −0.001440 | 0.135152 | 0.230306 | 0.075* | |
| C26 | −0.07055 (10) | 0.23635 (15) | 0.25720 (11) | 0.0656 (5) | |
| H26 | −0.110197 | 0.205101 | 0.234366 | 0.079* | |
| C27 | −0.07857 (9) | 0.32305 (15) | 0.29257 (10) | 0.0609 (4) | |
| H27 | −0.122870 | 0.350593 | 0.294063 | 0.073* | |
| C28 | −0.01816 (8) | 0.36856 (12) | 0.32624 (8) | 0.0460 (3) | |
| C29 | 0.05361 (7) | 0.92069 (11) | 0.58757 (8) | 0.0439 (3) | |
| C30 | 0.06356 (9) | 1.00275 (13) | 0.63086 (9) | 0.0548 (4) | |
| H30 | 0.108105 | 1.021570 | 0.651519 | 0.066* | |
| C31 | 0.00397 (9) | 1.05547 (14) | 0.64194 (10) | 0.0592 (4) | |
| H31 | 0.008415 | 1.111115 | 0.670836 | 0.071* | |
| C32 | −0.06267 (9) | 1.02692 (14) | 0.61067 (11) | 0.0597 (4) | |
| H32 | −0.101573 | 1.063905 | 0.619671 | 0.072* | |
| C33 | −0.07269 (8) | 0.94611 (13) | 0.56710 (10) | 0.0559 (4) | |
| H33 | −0.117224 | 0.927811 | 0.546088 | 0.067* | |
| C34 | −0.01281 (8) | 0.89285 (11) | 0.55594 (8) | 0.0447 (3) | |
| C35 | 0.27578 (7) | 1.15743 (9) | 0.54421 (6) | 0.0327 (2) | |
| C36 | 0.26578 (6) | 1.11098 (9) | 0.47017 (6) | 0.0311 (2) | |
| C37 | 0.26289 (7) | 1.16953 (9) | 0.40831 (7) | 0.0347 (3) | |
| H37 | 0.269002 | 1.236684 | 0.412910 | 0.042* | |
| C38 | 0.25090 (7) | 1.12754 (9) | 0.33992 (7) | 0.0347 (3) | |
| C39 | 0.24579 (7) | 1.02643 (9) | 0.33266 (7) | 0.0349 (3) | |
| C40 | 0.24977 (7) | 0.96838 (9) | 0.39459 (7) | 0.0353 (3) | |
| C41 | 0.25794 (7) | 1.01032 (9) | 0.46320 (7) | 0.0341 (3) | |
| H41 | 0.258181 | 0.971322 | 0.504286 | 0.041* | |
| O1 | 0.32408 (6) | 1.21949 (8) | 0.55594 (6) | 0.0507 (3) | |
| O2 | 0.23473 (6) | 1.13157 (8) | 0.58882 (5) | 0.0456 (2) | |
| O3 | 0.24418 (7) | 1.17940 (8) | 0.27628 (5) | 0.0503 (3) | |
| H3C | 0.2437 (11) | 1.2442 (18) | 0.2827 (12) | 0.075* | |
| O4 | 0.23704 (7) | 0.98745 (8) | 0.26442 (5) | 0.0509 (3) | |
| H4C | 0.2448 (11) | 0.9203 (17) | 0.2666 (12) | 0.076* | |
| O5 | 0.24291 (7) | 0.87063 (7) | 0.38227 (6) | 0.0525 (3) | |
| H5A | 0.2628 (11) | 0.8359 (17) | 0.4219 (13) | 0.079* | |
| C42 | 0.25350 (6) | 0.71858 (8) | 0.17515 (6) | 0.0291 (2) | |
| C43 | 0.25385 (6) | 0.63616 (8) | 0.22838 (6) | 0.0273 (2) | |
| C44 | 0.24764 (6) | 0.54077 (8) | 0.20308 (6) | 0.0305 (2) | |
| H44 | 0.242484 | 0.528655 | 0.153415 | 0.037* | |
| C45 | 0.24910 (7) | 0.46333 (8) | 0.25170 (6) | 0.0310 (2) | |
| C46 | 0.25561 (6) | 0.48180 (8) | 0.32612 (6) | 0.0288 (2) | |
| C47 | 0.26286 (6) | 0.57789 (8) | 0.35153 (6) | 0.0302 (2) | |
| C48 | 0.26155 (6) | 0.65504 (8) | 0.30281 (6) | 0.0305 (2) | |
| H48 | 0.265776 | 0.718937 | 0.319694 | 0.037* | |
| O6 | 0.27500 (5) | 0.80143 (6) | 0.19854 (5) | 0.0387 (2) | |
| O7 | 0.23446 (5) | 0.70082 (7) | 0.10908 (5) | 0.0376 (2) | |
| O8 | 0.24400 (6) | 0.36817 (6) | 0.23073 (5) | 0.0468 (3) | |
| H8B | 0.2433 (11) | 0.3648 (15) | 0.1836 (13) | 0.070* | |
| O9 | 0.25344 (5) | 0.40454 (6) | 0.37215 (5) | 0.0369 (2) | |
| H9A | 0.2689 (10) | 0.4163 (14) | 0.4144 (11) | 0.055* | |
| O10 | 0.26956 (6) | 0.58675 (7) | 0.42477 (5) | 0.0461 (3) | |
| H10A | 0.2798 (11) | 0.6453 (16) | 0.4390 (11) | 0.069* | |
| O11 | 0.23828 (10) | 0.94991 (12) | 0.08817 (8) | 0.0787 (4) | |
| H11A | 0.2465 (16) | 0.906 (2) | 0.1228 (18) | 0.118* | |
| H11B | 0.2023 (17) | 0.987 (2) | 0.1081 (17) | 0.118* | |
| O12 | 0.64430 (7) | 0.66889 (11) | 0.31948 (7) | 0.0594 (3) | |
| H12A | 0.6632 (13) | 0.7109 (18) | 0.3574 (14) | 0.089* | |
| H12B | 0.6785 (14) | 0.6568 (19) | 0.2968 (14) | 0.089* | |
| O13 | 0.29935 (5) | 0.75961 (7) | 0.48875 (5) | 0.03507 (19) | |
| H13A | 0.3455 (10) | 0.7797 (13) | 0.4988 (10) | 0.053* | |
| H13B | 0.2836 (9) | 0.7643 (13) | 0.5301 (10) | 0.053* | |
| O14 | 0.31027 (8) | 0.41737 (10) | 0.50706 (6) | 0.0626 (3) | |
| H14A | 0.3083 (13) | 0.357 (2) | 0.5319 (14) | 0.094* | |
| H14B | 0.2845 (14) | 0.461 (2) | 0.5353 (14) | 0.094* | |
| O15 | −0.11852 (9) | 0.73643 (15) | 0.43842 (15) | 0.1198 (9) | |
| H15A | −0.147 (2) | 0.775 (3) | 0.427 (2) | 0.180* | |
| H15B | −0.128 (2) | 0.681 (3) | 0.418 (2) | 0.180* | |
| O16 | −0.13294 (8) | 0.56909 (11) | 0.35690 (9) | 0.0709 (4) | |
| H16A | −0.1558 (15) | 0.562 (2) | 0.3116 (16) | 0.106* | |
| H16B | −0.0854 (16) | 0.536 (2) | 0.3645 (15) | 0.106* |
2-[3-(1H-Benzimidazol-2-yl)propyl]-1H-benzimidazol-3-ium 3,4,5-trihydroxybenzoate trihydrate . Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| N1 | 0.0319 (5) | 0.0501 (7) | 0.0416 (6) | −0.0034 (5) | 0.0066 (5) | −0.0024 (5) |
| N2 | 0.0371 (6) | 0.0425 (6) | 0.0326 (5) | −0.0037 (5) | 0.0058 (4) | −0.0039 (4) |
| N3 | 0.0360 (6) | 0.0433 (6) | 0.0336 (5) | 0.0031 (5) | 0.0044 (4) | 0.0000 (4) |
| N4 | 0.0338 (5) | 0.0386 (6) | 0.0379 (5) | −0.0027 (4) | 0.0020 (4) | −0.0025 (4) |
| C1 | 0.0369 (6) | 0.0383 (6) | 0.0314 (6) | −0.0017 (5) | 0.0050 (5) | 0.0021 (5) |
| C2 | 0.0419 (7) | 0.0472 (8) | 0.0357 (6) | 0.0017 (6) | 0.0073 (5) | −0.0041 (6) |
| C3 | 0.0450 (7) | 0.0451 (7) | 0.0353 (6) | −0.0038 (6) | 0.0103 (5) | −0.0035 (5) |
| C4 | 0.0480 (7) | 0.0376 (7) | 0.0357 (6) | −0.0034 (6) | 0.0091 (5) | −0.0029 (5) |
| C5 | 0.0378 (6) | 0.0369 (6) | 0.0318 (6) | −0.0028 (5) | 0.0038 (5) | −0.0073 (5) |
| C6 | 0.0407 (7) | 0.0377 (6) | 0.0309 (6) | −0.0007 (5) | 0.0049 (5) | −0.0039 (5) |
| C7 | 0.0461 (8) | 0.0524 (8) | 0.0451 (8) | −0.0020 (6) | 0.0140 (6) | −0.0008 (6) |
| C8 | 0.0675 (10) | 0.0501 (9) | 0.0458 (8) | −0.0057 (8) | 0.0210 (7) | 0.0031 (7) |
| C9 | 0.0748 (11) | 0.0446 (8) | 0.0405 (7) | −0.0003 (7) | 0.0059 (7) | 0.0060 (6) |
| C10 | 0.0518 (8) | 0.0433 (7) | 0.0424 (7) | 0.0022 (6) | −0.0032 (6) | 0.0008 (6) |
| C11 | 0.0397 (7) | 0.0365 (6) | 0.0315 (6) | −0.0025 (5) | 0.0016 (5) | −0.0053 (5) |
| C12 | 0.0415 (7) | 0.0392 (7) | 0.0350 (6) | −0.0058 (5) | 0.0038 (5) | 0.0022 (5) |
| C13 | 0.0526 (9) | 0.0544 (9) | 0.0529 (9) | −0.0165 (7) | −0.0005 (7) | −0.0075 (7) |
| C14 | 0.0825 (12) | 0.0467 (9) | 0.0481 (9) | −0.0158 (8) | 0.0018 (8) | −0.0122 (7) |
| C15 | 0.0768 (11) | 0.0429 (8) | 0.0408 (7) | 0.0014 (7) | 0.0151 (7) | −0.0046 (6) |
| C16 | 0.0483 (8) | 0.0458 (8) | 0.0393 (7) | 0.0008 (6) | 0.0119 (6) | −0.0011 (6) |
| C17 | 0.0396 (6) | 0.0354 (6) | 0.0297 (5) | −0.0029 (5) | 0.0045 (5) | 0.0013 (5) |
| N5 | 0.0361 (6) | 0.0516 (7) | 0.0598 (8) | 0.0016 (5) | 0.0005 (5) | −0.0060 (6) |
| N6 | 0.0370 (6) | 0.0601 (8) | 0.0593 (8) | 0.0018 (6) | 0.0062 (5) | −0.0065 (6) |
| N7 | 0.0347 (6) | 0.0530 (7) | 0.0470 (7) | 0.0068 (5) | −0.0043 (5) | −0.0031 (5) |
| N8 | 0.0349 (6) | 0.0508 (7) | 0.0576 (8) | 0.0022 (5) | −0.0021 (5) | −0.0050 (6) |
| C18 | 0.0387 (7) | 0.0486 (8) | 0.0479 (8) | 0.0040 (6) | −0.0006 (6) | −0.0005 (6) |
| C19 | 0.0428 (8) | 0.0587 (10) | 0.0837 (13) | 0.0053 (7) | −0.0021 (8) | −0.0204 (9) |
| C20 | 0.0428 (8) | 0.0547 (9) | 0.0499 (8) | −0.0002 (7) | 0.0046 (6) | −0.0064 (7) |
| C21 | 0.0437 (9) | 0.0670 (12) | 0.1053 (16) | 0.0046 (8) | −0.0051 (9) | −0.0332 (11) |
| C22 | 0.0392 (7) | 0.0531 (9) | 0.0538 (8) | 0.0011 (6) | 0.0038 (6) | −0.0050 (7) |
| C23 | 0.0411 (7) | 0.0486 (8) | 0.0444 (7) | −0.0036 (6) | 0.0037 (6) | 0.0028 (6) |
| C24 | 0.0540 (9) | 0.0527 (9) | 0.0630 (10) | 0.0015 (7) | 0.0057 (8) | −0.0018 (8) |
| C25 | 0.0681 (11) | 0.0561 (10) | 0.0645 (10) | −0.0119 (9) | 0.0085 (9) | −0.0095 (8) |
| C26 | 0.0567 (10) | 0.0724 (12) | 0.0672 (11) | −0.0215 (9) | 0.0044 (8) | −0.0088 (9) |
| C27 | 0.0401 (8) | 0.0767 (12) | 0.0661 (11) | −0.0092 (8) | 0.0072 (7) | −0.0058 (9) |
| C28 | 0.0393 (7) | 0.0545 (9) | 0.0445 (7) | −0.0052 (6) | 0.0064 (6) | 0.0020 (6) |
| C29 | 0.0386 (7) | 0.0526 (8) | 0.0399 (7) | 0.0068 (6) | 0.0012 (5) | 0.0013 (6) |
| C30 | 0.0464 (8) | 0.0643 (10) | 0.0519 (9) | 0.0023 (7) | −0.0023 (7) | −0.0102 (8) |
| C31 | 0.0571 (10) | 0.0621 (10) | 0.0589 (10) | 0.0063 (8) | 0.0080 (8) | −0.0122 (8) |
| C32 | 0.0483 (9) | 0.0616 (10) | 0.0710 (11) | 0.0117 (8) | 0.0153 (8) | −0.0025 (9) |
| C33 | 0.0361 (7) | 0.0602 (10) | 0.0715 (11) | 0.0057 (7) | 0.0062 (7) | −0.0013 (8) |
| C34 | 0.0379 (7) | 0.0486 (8) | 0.0471 (8) | 0.0030 (6) | 0.0029 (6) | 0.0018 (6) |
| C35 | 0.0389 (6) | 0.0273 (5) | 0.0310 (5) | 0.0043 (5) | 0.0007 (5) | 0.0023 (4) |
| C36 | 0.0330 (6) | 0.0290 (5) | 0.0311 (5) | 0.0014 (4) | 0.0029 (4) | 0.0011 (4) |
| C37 | 0.0420 (7) | 0.0262 (5) | 0.0361 (6) | −0.0002 (5) | 0.0061 (5) | 0.0032 (5) |
| C38 | 0.0419 (7) | 0.0310 (6) | 0.0315 (6) | 0.0025 (5) | 0.0057 (5) | 0.0070 (5) |
| C39 | 0.0408 (6) | 0.0325 (6) | 0.0305 (6) | 0.0023 (5) | 0.0002 (5) | 0.0015 (5) |
| C40 | 0.0441 (7) | 0.0264 (6) | 0.0344 (6) | 0.0013 (5) | −0.0003 (5) | 0.0013 (4) |
| C41 | 0.0435 (7) | 0.0279 (6) | 0.0304 (6) | 0.0005 (5) | 0.0015 (5) | 0.0047 (4) |
| O1 | 0.0561 (6) | 0.0516 (6) | 0.0435 (5) | −0.0157 (5) | 0.0018 (5) | −0.0086 (5) |
| O2 | 0.0578 (6) | 0.0472 (6) | 0.0334 (5) | −0.0042 (5) | 0.0114 (4) | 0.0003 (4) |
| O3 | 0.0840 (8) | 0.0333 (5) | 0.0340 (5) | 0.0042 (5) | 0.0084 (5) | 0.0103 (4) |
| O4 | 0.0819 (8) | 0.0373 (5) | 0.0315 (5) | 0.0053 (5) | −0.0029 (5) | −0.0017 (4) |
| O5 | 0.0904 (8) | 0.0260 (5) | 0.0381 (5) | 0.0017 (5) | −0.0065 (5) | −0.0002 (4) |
| C42 | 0.0245 (5) | 0.0295 (5) | 0.0332 (5) | −0.0008 (4) | 0.0024 (4) | 0.0047 (4) |
| C43 | 0.0284 (5) | 0.0253 (5) | 0.0282 (5) | −0.0012 (4) | 0.0027 (4) | 0.0022 (4) |
| C44 | 0.0369 (6) | 0.0287 (5) | 0.0260 (5) | −0.0013 (4) | 0.0040 (4) | −0.0006 (4) |
| C45 | 0.0393 (6) | 0.0232 (5) | 0.0309 (5) | −0.0006 (4) | 0.0048 (4) | −0.0020 (4) |
| C46 | 0.0335 (6) | 0.0247 (5) | 0.0282 (5) | −0.0007 (4) | 0.0043 (4) | 0.0023 (4) |
| C47 | 0.0371 (6) | 0.0277 (5) | 0.0259 (5) | −0.0030 (4) | 0.0044 (4) | −0.0013 (4) |
| C48 | 0.0382 (6) | 0.0236 (5) | 0.0297 (5) | −0.0029 (4) | 0.0031 (4) | −0.0014 (4) |
| O6 | 0.0449 (5) | 0.0267 (4) | 0.0435 (5) | −0.0046 (4) | 0.0004 (4) | 0.0055 (4) |
| O7 | 0.0393 (5) | 0.0422 (5) | 0.0307 (4) | −0.0077 (4) | 0.0011 (3) | 0.0071 (4) |
| O8 | 0.0875 (8) | 0.0230 (4) | 0.0298 (4) | −0.0028 (4) | 0.0067 (5) | −0.0031 (3) |
| O9 | 0.0537 (6) | 0.0272 (4) | 0.0295 (4) | −0.0034 (4) | 0.0033 (4) | 0.0043 (3) |
| O10 | 0.0817 (8) | 0.0313 (5) | 0.0252 (4) | −0.0098 (5) | 0.0055 (4) | −0.0021 (3) |
| O11 | 0.1061 (12) | 0.0686 (9) | 0.0664 (9) | 0.0174 (8) | 0.0319 (8) | 0.0241 (7) |
| O12 | 0.0491 (7) | 0.0839 (9) | 0.0438 (6) | 0.0090 (6) | −0.0017 (5) | −0.0066 (6) |
| O13 | 0.0400 (5) | 0.0350 (5) | 0.0302 (4) | −0.0022 (4) | 0.0038 (4) | −0.0040 (3) |
| O14 | 0.0956 (10) | 0.0511 (7) | 0.0407 (6) | 0.0071 (7) | 0.0048 (6) | 0.0052 (5) |
| O15 | 0.0562 (9) | 0.0945 (13) | 0.196 (2) | 0.0233 (8) | −0.0446 (11) | −0.0667 (14) |
| O16 | 0.0526 (7) | 0.0784 (9) | 0.0787 (9) | 0.0016 (6) | −0.0064 (6) | −0.0155 (7) |
2-[3-(1H-Benzimidazol-2-yl)propyl]-1H-benzimidazol-3-ium 3,4,5-trihydroxybenzoate trihydrate . Geometric parameters (Å, º)
| N1—C1 | 1.3514 (17) | C24—C25 | 1.377 (3) |
| N1—C12 | 1.3766 (18) | C24—H24 | 0.9300 |
| N1—H1 | 0.818 (18) | C25—C26 | 1.390 (3) |
| N2—C1 | 1.3162 (17) | C25—H25 | 0.9300 |
| N2—C17 | 1.3942 (16) | C26—C27 | 1.373 (3) |
| N3—C5 | 1.3304 (17) | C26—H26 | 0.9300 |
| N3—C6 | 1.3852 (17) | C27—C28 | 1.397 (2) |
| N3—H3 | 0.885 (17) | C27—H27 | 0.9300 |
| N4—C5 | 1.3344 (17) | C29—C30 | 1.382 (2) |
| N4—C11 | 1.3890 (17) | C29—C34 | 1.391 (2) |
| N4—H4 | 0.878 (17) | C30—C31 | 1.383 (2) |
| C1—C2 | 1.4894 (18) | C30—H30 | 0.9300 |
| C2—C3 | 1.512 (2) | C31—C32 | 1.395 (3) |
| C2—H2A | 0.9700 | C31—H31 | 0.9300 |
| C2—H2B | 0.9700 | C32—C33 | 1.371 (3) |
| C3—C4 | 1.5381 (18) | C32—H32 | 0.9300 |
| C3—H3A | 0.9700 | C33—C34 | 1.392 (2) |
| C3—H3B | 0.9700 | C33—H33 | 0.9300 |
| C4—C5 | 1.4832 (19) | C35—O2 | 1.2528 (16) |
| C4—H4A | 0.9700 | C35—O1 | 1.2558 (16) |
| C4—H4B | 0.9700 | C35—C36 | 1.5057 (17) |
| C6—C11 | 1.3876 (19) | C36—C41 | 1.3914 (17) |
| C6—C7 | 1.393 (2) | C36—C37 | 1.3955 (17) |
| C7—C8 | 1.378 (2) | C37—C38 | 1.3879 (18) |
| C7—H7 | 0.9300 | C37—H37 | 0.9300 |
| C8—C9 | 1.391 (3) | C38—O3 | 1.3708 (15) |
| C8—H8 | 0.9300 | C38—C39 | 1.3939 (18) |
| C9—C10 | 1.380 (2) | C39—O4 | 1.3662 (15) |
| C9—H9 | 0.9300 | C39—C40 | 1.3917 (17) |
| C10—C11 | 1.386 (2) | C40—O5 | 1.3621 (15) |
| C10—H10 | 0.9300 | C40—C41 | 1.3886 (17) |
| C12—C13 | 1.383 (2) | C41—H41 | 0.9300 |
| C12—C17 | 1.3987 (18) | O3—H3C | 0.90 (2) |
| C13—C14 | 1.385 (3) | O4—H4C | 0.93 (2) |
| C13—H13 | 0.9300 | O5—H5A | 0.92 (2) |
| C14—C15 | 1.389 (3) | C42—O7 | 1.2621 (15) |
| C14—H14 | 0.9300 | C42—O6 | 1.2668 (15) |
| C15—C16 | 1.384 (2) | C42—C43 | 1.4990 (15) |
| C15—H15 | 0.9300 | C43—C44 | 1.3888 (16) |
| C16—C17 | 1.3934 (19) | C43—C48 | 1.3956 (16) |
| C16—H16 | 0.9300 | C44—C45 | 1.3903 (16) |
| N5—C22 | 1.360 (2) | C44—H44 | 0.9300 |
| N5—C23 | 1.380 (2) | C45—O8 | 1.3606 (14) |
| N5—H5 | 0.87 (2) | C45—C46 | 1.3947 (16) |
| N6—C22 | 1.3135 (19) | C46—O9 | 1.3630 (14) |
| N6—C28 | 1.392 (2) | C46—C47 | 1.3996 (16) |
| N7—C18 | 1.332 (2) | C47—O10 | 1.3550 (14) |
| N7—C29 | 1.3895 (19) | C47—C48 | 1.3885 (16) |
| N7—H7A | 0.879 (19) | C48—H48 | 0.9300 |
| N8—C18 | 1.3326 (19) | O8—H8B | 0.87 (2) |
| N8—C34 | 1.389 (2) | O9—H9A | 0.82 (2) |
| N8—H8A | 0.919 (19) | O10—H10A | 0.86 (2) |
| C18—C19 | 1.480 (2) | O11—H11A | 0.88 (3) |
| C19—C20 | 1.515 (2) | O11—H11B | 0.96 (3) |
| C19—H19A | 0.9700 | O12—H12A | 0.95 (3) |
| C19—H19B | 0.9700 | O12—H12B | 0.83 (3) |
| C20—C21 | 1.515 (2) | O13—H13A | 0.923 (19) |
| C20—H20A | 0.9700 | O13—H13B | 0.856 (19) |
| C20—H20B | 0.9700 | O14—H14A | 0.94 (3) |
| C21—C22 | 1.487 (2) | O14—H14B | 0.97 (3) |
| C21—H21A | 0.9700 | O15—H15A | 0.77 (5) |
| C21—H21B | 0.9700 | O15—H15B | 0.86 (5) |
| C23—C24 | 1.385 (2) | O16—H16A | 0.91 (3) |
| C23—C28 | 1.397 (2) | O16—H16B | 1.01 (3) |
| C1—N1—C12 | 107.86 (11) | C20—C21—H21A | 108.1 |
| C1—N1—H1 | 125.6 (13) | C22—C21—H21B | 108.1 |
| C12—N1—H1 | 126.4 (13) | C20—C21—H21B | 108.1 |
| C1—N2—C17 | 105.01 (11) | H21A—C21—H21B | 107.3 |
| C5—N3—C6 | 109.30 (12) | N6—C22—N5 | 112.22 (14) |
| C5—N3—H3 | 125.9 (11) | N6—C22—C21 | 127.87 (15) |
| C6—N3—H3 | 124.7 (11) | N5—C22—C21 | 119.87 (14) |
| C5—N4—C11 | 109.12 (11) | N5—C23—C24 | 132.79 (15) |
| C5—N4—H4 | 125.5 (11) | N5—C23—C28 | 104.44 (14) |
| C11—N4—H4 | 125.3 (11) | C24—C23—C28 | 122.76 (14) |
| N2—C1—N1 | 112.64 (12) | C25—C24—C23 | 116.70 (16) |
| N2—C1—C2 | 126.63 (12) | C25—C24—H24 | 121.6 |
| N1—C1—C2 | 120.70 (12) | C23—C24—H24 | 121.6 |
| C1—C2—C3 | 114.09 (11) | C24—C25—C26 | 121.48 (18) |
| C1—C2—H2A | 108.7 | C24—C25—H25 | 119.3 |
| C3—C2—H2A | 108.7 | C26—C25—H25 | 119.3 |
| C1—C2—H2B | 108.7 | C27—C26—C25 | 121.75 (17) |
| C3—C2—H2B | 108.7 | C27—C26—H26 | 119.1 |
| H2A—C2—H2B | 107.6 | C25—C26—H26 | 119.1 |
| C2—C3—C4 | 111.90 (11) | C26—C27—C28 | 117.95 (17) |
| C2—C3—H3A | 109.2 | C26—C27—H27 | 121.0 |
| C4—C3—H3A | 109.2 | C28—C27—H27 | 121.0 |
| C2—C3—H3B | 109.2 | N6—C28—C27 | 130.56 (15) |
| C4—C3—H3B | 109.2 | N6—C28—C23 | 110.07 (13) |
| H3A—C3—H3B | 107.9 | C27—C28—C23 | 119.36 (16) |
| C5—C4—C3 | 111.97 (11) | C30—C29—N7 | 132.42 (14) |
| C5—C4—H4A | 109.2 | C30—C29—C34 | 121.87 (14) |
| C3—C4—H4A | 109.2 | N7—C29—C34 | 105.71 (13) |
| C5—C4—H4B | 109.2 | C29—C30—C31 | 116.66 (15) |
| C3—C4—H4B | 109.2 | C29—C30—H30 | 121.7 |
| H4A—C4—H4B | 107.9 | C31—C30—H30 | 121.7 |
| N3—C5—N4 | 108.90 (12) | C30—C31—C32 | 121.36 (17) |
| N3—C5—C4 | 125.47 (12) | C30—C31—H31 | 119.3 |
| N4—C5—C4 | 125.61 (12) | C32—C31—H31 | 119.3 |
| N3—C6—C11 | 106.44 (11) | C33—C32—C31 | 122.16 (16) |
| N3—C6—C7 | 132.10 (13) | C33—C32—H32 | 118.9 |
| C11—C6—C7 | 121.46 (13) | C31—C32—H32 | 118.9 |
| C8—C7—C6 | 116.32 (15) | C32—C33—C34 | 116.59 (15) |
| C8—C7—H7 | 121.8 | C32—C33—H33 | 121.7 |
| C6—C7—H7 | 121.8 | C34—C33—H33 | 121.7 |
| C7—C8—C9 | 121.76 (15) | N8—C34—C29 | 106.83 (13) |
| C7—C8—H8 | 119.1 | N8—C34—C33 | 131.82 (15) |
| C9—C8—H8 | 119.1 | C29—C34—C33 | 121.35 (15) |
| C10—C9—C8 | 122.38 (15) | O2—C35—O1 | 125.40 (12) |
| C10—C9—H9 | 118.8 | O2—C35—C36 | 117.21 (11) |
| C8—C9—H9 | 118.8 | O1—C35—C36 | 117.39 (11) |
| C9—C10—C11 | 115.77 (14) | C41—C36—C37 | 119.94 (11) |
| C9—C10—H10 | 122.1 | C41—C36—C35 | 120.32 (11) |
| C11—C10—H10 | 122.1 | C37—C36—C35 | 119.72 (11) |
| C10—C11—C6 | 122.31 (13) | C38—C37—C36 | 120.01 (11) |
| C10—C11—N4 | 131.45 (13) | C38—C37—H37 | 120.0 |
| C6—C11—N4 | 106.24 (11) | C36—C37—H37 | 120.0 |
| N1—C12—C13 | 132.94 (14) | O3—C38—C37 | 124.17 (11) |
| N1—C12—C17 | 104.87 (11) | O3—C38—C39 | 115.65 (11) |
| C13—C12—C17 | 122.20 (14) | C37—C38—C39 | 120.17 (11) |
| C12—C13—C14 | 116.43 (15) | O4—C39—C40 | 122.04 (12) |
| C12—C13—H13 | 121.8 | O4—C39—C38 | 118.54 (11) |
| C14—C13—H13 | 121.8 | C40—C39—C38 | 119.42 (11) |
| C13—C14—C15 | 122.15 (15) | O5—C40—C41 | 123.99 (11) |
| C13—C14—H14 | 118.9 | O5—C40—C39 | 115.34 (11) |
| C15—C14—H14 | 118.9 | C41—C40—C39 | 120.64 (11) |
| C16—C15—C14 | 121.27 (15) | C40—C41—C36 | 119.67 (11) |
| C16—C15—H15 | 119.4 | C40—C41—H41 | 120.2 |
| C14—C15—H15 | 119.4 | C36—C41—H41 | 120.2 |
| C15—C16—C17 | 117.35 (14) | C38—O3—H3C | 113.6 (14) |
| C15—C16—H16 | 121.3 | C39—O4—H4C | 110.0 (14) |
| C17—C16—H16 | 121.3 | C40—O5—H5A | 110.5 (14) |
| C16—C17—N2 | 129.79 (13) | O7—C42—O6 | 123.53 (11) |
| C16—C17—C12 | 120.59 (13) | O7—C42—C43 | 118.25 (10) |
| N2—C17—C12 | 109.61 (11) | O6—C42—C43 | 118.15 (10) |
| C22—N5—C23 | 108.04 (13) | C44—C43—C48 | 120.26 (10) |
| C22—N5—H5 | 125.5 (13) | C44—C43—C42 | 119.49 (10) |
| C23—N5—H5 | 126.5 (13) | C48—C43—C42 | 120.24 (10) |
| C22—N6—C28 | 105.22 (13) | C43—C44—C45 | 120.27 (11) |
| C18—N7—C29 | 109.59 (12) | C43—C44—H44 | 119.9 |
| C18—N7—H7A | 121.7 (12) | C45—C44—H44 | 119.9 |
| C29—N7—H7A | 128.4 (12) | O8—C45—C44 | 123.37 (11) |
| C18—N8—C34 | 108.88 (13) | O8—C45—C46 | 116.88 (10) |
| C18—N8—H8A | 124.5 (12) | C44—C45—C46 | 119.74 (10) |
| C34—N8—H8A | 126.3 (12) | O9—C46—C45 | 118.23 (10) |
| N7—C18—N8 | 108.99 (13) | O9—C46—C47 | 121.88 (10) |
| N7—C18—C19 | 123.26 (14) | C45—C46—C47 | 119.88 (10) |
| N8—C18—C19 | 127.71 (14) | O10—C47—C48 | 125.21 (11) |
| C18—C19—C20 | 117.10 (14) | O10—C47—C46 | 114.60 (10) |
| C18—C19—H19A | 108.0 | C48—C47—C46 | 120.19 (10) |
| C20—C19—H19A | 108.0 | C47—C48—C43 | 119.63 (10) |
| C18—C19—H19B | 108.0 | C47—C48—H48 | 120.2 |
| C20—C19—H19B | 108.0 | C43—C48—H48 | 120.2 |
| H19A—C19—H19B | 107.3 | C45—O8—H8B | 109.2 (14) |
| C19—C20—C21 | 109.17 (13) | C46—O9—H9A | 114.3 (13) |
| C19—C20—H20A | 109.8 | C47—O10—H10A | 112.5 (14) |
| C21—C20—H20A | 109.8 | H11A—O11—H11B | 99 (2) |
| C19—C20—H20B | 109.8 | H12A—O12—H12B | 104 (2) |
| C21—C20—H20B | 109.8 | H13A—O13—H13B | 102.7 (16) |
| H20A—C20—H20B | 108.3 | H14A—O14—H14B | 103 (2) |
| C22—C21—C20 | 116.86 (15) | H15A—O15—H15B | 112 (4) |
| C22—C21—H21A | 108.1 | H16A—O16—H16B | 114 (2) |
| C17—N2—C1—N1 | 0.55 (15) | C25—C26—C27—C28 | 0.2 (3) |
| C17—N2—C1—C2 | −177.43 (13) | C22—N6—C28—C27 | −179.17 (18) |
| C12—N1—C1—N2 | −0.45 (16) | C22—N6—C28—C23 | −0.45 (18) |
| C12—N1—C1—C2 | 177.66 (12) | C26—C27—C28—N6 | 178.48 (17) |
| N2—C1—C2—C3 | 3.7 (2) | C26—C27—C28—C23 | −0.1 (3) |
| N1—C1—C2—C3 | −174.12 (13) | N5—C23—C28—N6 | 0.52 (17) |
| C1—C2—C3—C4 | 170.03 (12) | C24—C23—C28—N6 | −178.67 (15) |
| C2—C3—C4—C5 | −69.39 (16) | N5—C23—C28—C27 | 179.40 (15) |
| C6—N3—C5—N4 | −0.36 (14) | C24—C23—C28—C27 | 0.2 (2) |
| C6—N3—C5—C4 | −178.65 (12) | C18—N7—C29—C30 | −179.43 (17) |
| C11—N4—C5—N3 | 0.53 (14) | C18—N7—C29—C34 | 0.05 (17) |
| C11—N4—C5—C4 | 178.82 (12) | N7—C29—C30—C31 | −179.88 (17) |
| C3—C4—C5—N3 | 101.02 (15) | C34—C29—C30—C31 | 0.7 (2) |
| C3—C4—C5—N4 | −76.99 (16) | C29—C30—C31—C32 | −0.1 (3) |
| C5—N3—C6—C11 | 0.06 (14) | C30—C31—C32—C33 | −0.5 (3) |
| C5—N3—C6—C7 | 179.51 (14) | C31—C32—C33—C34 | 0.6 (3) |
| N3—C6—C7—C8 | −179.78 (14) | C18—N8—C34—C29 | 0.21 (18) |
| C11—C6—C7—C8 | −0.4 (2) | C18—N8—C34—C33 | −179.73 (17) |
| C6—C7—C8—C9 | 0.6 (2) | C30—C29—C34—N8 | 179.40 (15) |
| C7—C8—C9—C10 | −0.5 (3) | N7—C29—C34—N8 | −0.16 (17) |
| C8—C9—C10—C11 | 0.1 (2) | C30—C29—C34—C33 | −0.7 (2) |
| C9—C10—C11—C6 | 0.1 (2) | N7—C29—C34—C33 | 179.79 (15) |
| C9—C10—C11—N4 | 179.24 (14) | C32—C33—C34—N8 | 179.93 (17) |
| N3—C6—C11—C10 | 179.59 (12) | C32—C33—C34—C29 | 0.0 (3) |
| C7—C6—C11—C10 | 0.1 (2) | O2—C35—C36—C41 | −47.51 (17) |
| N3—C6—C11—N4 | 0.26 (14) | O1—C35—C36—C41 | 133.14 (13) |
| C7—C6—C11—N4 | −179.27 (12) | O2—C35—C36—C37 | 131.13 (13) |
| C5—N4—C11—C10 | −179.73 (14) | O1—C35—C36—C37 | −48.22 (17) |
| C5—N4—C11—C6 | −0.49 (14) | C41—C36—C37—C38 | 1.20 (19) |
| C1—N1—C12—C13 | −179.66 (16) | C35—C36—C37—C38 | −177.45 (12) |
| C1—N1—C12—C17 | 0.14 (15) | C36—C37—C38—O3 | 177.07 (13) |
| N1—C12—C13—C14 | 179.88 (16) | C36—C37—C38—C39 | −3.7 (2) |
| C17—C12—C13—C14 | 0.1 (2) | O3—C38—C39—O4 | 2.09 (19) |
| C12—C13—C14—C15 | −0.8 (3) | C37—C38—C39—O4 | −177.18 (12) |
| C13—C14—C15—C16 | 0.8 (3) | O3—C38—C39—C40 | −177.97 (12) |
| C14—C15—C16—C17 | −0.2 (2) | C37—C38—C39—C40 | 2.8 (2) |
| C15—C16—C17—N2 | −179.85 (14) | O4—C39—C40—O5 | −1.3 (2) |
| C15—C16—C17—C12 | −0.5 (2) | C38—C39—C40—O5 | 178.80 (13) |
| C1—N2—C17—C16 | 178.96 (14) | O4—C39—C40—C41 | −179.33 (13) |
| C1—N2—C17—C12 | −0.45 (14) | C38—C39—C40—C41 | 0.7 (2) |
| N1—C12—C17—C16 | −179.28 (13) | O5—C40—C41—C36 | 178.87 (13) |
| C13—C12—C17—C16 | 0.5 (2) | C39—C40—C41—C36 | −3.2 (2) |
| N1—C12—C17—N2 | 0.18 (14) | C37—C36—C41—C40 | 2.27 (19) |
| C13—C12—C17—N2 | −179.98 (14) | C35—C36—C41—C40 | −179.09 (12) |
| C29—N7—C18—N8 | 0.08 (18) | O7—C42—C43—C44 | 13.10 (16) |
| C29—N7—C18—C19 | 177.95 (16) | O6—C42—C43—C44 | −164.16 (11) |
| C34—N8—C18—N7 | −0.18 (18) | O7—C42—C43—C48 | −167.98 (11) |
| C34—N8—C18—C19 | −177.93 (17) | O6—C42—C43—C48 | 14.77 (17) |
| N7—C18—C19—C20 | 168.86 (16) | C48—C43—C44—C45 | −0.05 (18) |
| N8—C18—C19—C20 | −13.7 (3) | C42—C43—C44—C45 | 178.87 (11) |
| C18—C19—C20—C21 | −177.53 (18) | C43—C44—C45—O8 | −179.34 (12) |
| C19—C20—C21—C22 | −177.07 (19) | C43—C44—C45—C46 | 1.12 (18) |
| C28—N6—C22—N5 | 0.20 (19) | O8—C45—C46—O9 | −2.70 (17) |
| C28—N6—C22—C21 | 177.97 (19) | C44—C45—C46—O9 | 176.87 (11) |
| C23—N5—C22—N6 | 0.1 (2) | O8—C45—C46—C47 | 178.41 (11) |
| C23—N5—C22—C21 | −177.85 (17) | C44—C45—C46—C47 | −2.02 (18) |
| C20—C21—C22—N6 | 7.4 (3) | O9—C46—C47—O10 | 1.88 (17) |
| C20—C21—C22—N5 | −175.00 (17) | C45—C46—C47—O10 | −179.27 (11) |
| C22—N5—C23—C24 | 178.69 (18) | O9—C46—C47—C48 | −176.98 (11) |
| C22—N5—C23—C28 | −0.39 (17) | C45—C46—C47—C48 | 1.87 (18) |
| N5—C23—C24—C25 | −179.23 (17) | O10—C47—C48—C43 | −179.53 (12) |
| C28—C23—C24—C25 | −0.3 (3) | C46—C47—C48—C43 | −0.81 (18) |
| C23—C24—C25—C26 | 0.3 (3) | C44—C43—C48—C47 | −0.10 (18) |
| C24—C25—C26—C27 | −0.3 (3) | C42—C43—C48—C47 | −179.02 (11) |
2-[3-(1H-Benzimidazol-2-yl)propyl]-1H-benzimidazol-3-ium 3,4,5-trihydroxybenzoate trihydrate . Hydrogen-bond geometry (Å, º)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N1—H1···O1i | 0.818 (18) | 2.330 (18) | 3.0706 (17) | 150.9 (16) |
| N3—H3···O12 | 0.885 (17) | 1.830 (18) | 2.6968 (17) | 166.0 (16) |
| N4—H4···O6 | 0.878 (17) | 1.884 (18) | 2.7290 (15) | 160.9 (16) |
| N5—H5···O9 | 0.87 (2) | 2.18 (2) | 3.0248 (17) | 162.9 (18) |
| N7—H7A···O7ii | 0.879 (19) | 1.84 (2) | 2.7045 (15) | 165.7 (18) |
| N8—H8A···O15 | 0.919 (19) | 1.78 (2) | 2.676 (2) | 165.3 (18) |
| O3—H3C···O8iii | 0.90 (2) | 1.95 (2) | 2.7201 (14) | 142.6 (19) |
| O4—H4C···O6 | 0.93 (2) | 2.18 (2) | 2.9509 (14) | 139.8 (19) |
| O5—H5A···O13 | 0.92 (2) | 1.71 (2) | 2.6263 (14) | 173 (2) |
| O8—H8B···O2iv | 0.87 (2) | 1.75 (2) | 2.6171 (13) | 174 (2) |
| O9—H9A···O14 | 0.82 (2) | 1.81 (2) | 2.6193 (15) | 168.4 (19) |
| O10—H10A···O13 | 0.86 (2) | 1.83 (2) | 2.6808 (13) | 168 (2) |
| O11—H11A···O6 | 0.88 (3) | 2.04 (3) | 2.9148 (17) | 174 (3) |
| O11—H11B···O16v | 0.96 (3) | 1.91 (3) | 2.865 (2) | 175 (3) |
| O12—H12A···O1i | 0.95 (3) | 1.86 (3) | 2.7796 (17) | 162 (2) |
| O12—H12B···O3vi | 0.83 (3) | 2.14 (3) | 2.9254 (18) | 158 (2) |
| O13—H13A···N2 | 0.923 (19) | 1.81 (2) | 2.7348 (15) | 175.0 (17) |
| O13—H13B···O7ii | 0.856 (19) | 1.89 (2) | 2.7249 (13) | 165.5 (18) |
| O14—H14A···O1vii | 0.94 (3) | 1.96 (3) | 2.8608 (18) | 160 (2) |
| O14—H14B···O11ii | 0.97 (3) | 1.85 (3) | 2.814 (2) | 177 (2) |
| O15—H15A···O2viii | 0.77 (5) | 2.10 (5) | 2.865 (2) | 171 (5) |
| O15—H15B···O16 | 0.86 (5) | 1.91 (5) | 2.742 (2) | 165 (4) |
| O16—H16A···O4ix | 0.91 (3) | 2.22 (3) | 3.0444 (18) | 150 (2) |
| O16—H16B···N6 | 1.01 (3) | 1.80 (3) | 2.800 (2) | 167 (2) |
Symmetry codes: (i) −x+1, −y+2, −z+1; (ii) x, −y+3/2, z+1/2; (iii) x, y+1, z; (iv) x, −y+3/2, z−1/2; (v) −x, y+1/2, −z+1/2; (vi) −x+1, y−1/2, −z+1/2; (vii) x, y−1, z; (viii) −x, −y+2, −z+1; (ix) −x, y−1/2, −z+1/2.
Funding Statement
Funding for this research was provided by: Consejo Nacional de Ciencia y Tecnología (scholarship No. 737995 to José Carlos Palacios Rodríguez).
References
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S2414314625002561/bt4166sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S2414314625002561/bt4166Isup2.hkl
Supporting information file. DOI: 10.1107/S2414314625002561/bt4166Isup3.cml
CCDC reference: 2432736
Additional supporting information: crystallographic information; 3D view; checkCIF report



