Abstract
Recombination rates have been examined in two-point crosses of various defined cyc1 mutations that cause the loss or nonfunction of iso-1-cytochrome c in the yeast Saccharomyces cerevisiae. Recombinants arising by three different means were investigated, including X-ray induced mitotic recombination, spontaneous mitotic recombination, and meiotic recombination. Heteroallelic diploid strains were derived by crossing cyc1 mutants containing a series of alterations at or near the same site to cyc1 mutants containing alterations at variouis distances. Marked disproportionalities between physical distances and recombination frequencies were observed with certain cyc1 mutations, indicating that certain mismatched bases can significantly affect recombination. The marker effects were more pronounced when the two mutational sites of the heteroalleles were within about 20 base pairs, but separated by at least 4 base pairs. Two alleles, cyc1-163 and cyc1-166, which arose by G·C->C·G transversions at nucleotide positions 3 and 194, respectively, gave rise to especially high rates of recombination. Other mutations having different substitutions at the same nucleotide positions were not associated with abnormally high recombination frequencies. We suggest that these marker effects are due to the lack of repair of either G/G or C/C mismatched base pairs, while the other mismatched base pair of the heteroallele undergoes substantial repair. Furthermore, we suggest that diminished recombination frequencies are due to the concomitant repair of both mismatches within the same DNA tract.
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- Ahn B. Y., Livingston D. M. Mitotic gene conversion lengths, coconversion patterns, and the incidence of reciprocal recombination in a Saccharomyces cerevisiae plasmid system. Mol Cell Biol. 1986 Nov;6(11):3685–3693. doi: 10.1128/mcb.6.11.3685. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Bishop D. K., Kolodner R. D. Repair of heteroduplex plasmid DNA after transformation into Saccharomyces cerevisiae. Mol Cell Biol. 1986 Oct;6(10):3401–3409. doi: 10.1128/mcb.6.10.3401. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Claverys J. P., Lacks S. A. Heteroduplex deoxyribonucleic acid base mismatch repair in bacteria. Microbiol Rev. 1986 Jun;50(2):133–165. doi: 10.1128/mr.50.2.133-165.1986. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Claverys J. P., Méjean V., Gasc A. M., Sicard A. M. Mismatch repair in Streptococcus pneumoniae: relationship between base mismatches and transformation efficiencies. Proc Natl Acad Sci U S A. 1983 Oct;80(19):5956–5960. doi: 10.1073/pnas.80.19.5956. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Dicarprio L., Hastings P. J. Gene conversion and intragenic recombination at the SUP6 locus and the surrounding region in Saccharomyces cerevisiae. Genetics. 1976 Dec;84(4):697–721. doi: 10.1093/genetics/84.4.697. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Dohet C., Wagner R., Radman M. Repair of defined single base-pair mismatches in Escherichia coli. Proc Natl Acad Sci U S A. 1985 Jan;82(2):503–505. doi: 10.1073/pnas.82.2.503. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Fogel S., Mortimer R., Lusnak K., Tavares F. Meiotic gene conversion: a signal of the basic recombination event in yeast. Cold Spring Harb Symp Quant Biol. 1979;43(Pt 2):1325–1341. doi: 10.1101/sqb.1979.043.01.152. [DOI] [PubMed] [Google Scholar]
- Golin J. E., Esposito M. S. Coincident gene conversion during mitosis in saccharomyces. Genetics. 1984 Jul;107(3):355–365. doi: 10.1093/genetics/107.3.355. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Golin J. E., Esposito M. S. Mitotic recombination: mismatch correction and replicational resolution of Holliday structures formed at the two strand stage in Saccharomyces. Mol Gen Genet. 1981;183(2):252–263. doi: 10.1007/BF00270626. [DOI] [PubMed] [Google Scholar]
- Golin J. E., Falco S. C., Margolskee J. P. Coincident gene conversion events in yeast that involve a large insertion. Genetics. 1986 Dec;114(4):1081–1094. doi: 10.1093/genetics/114.4.1081. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Hampsey D. M., Das G., Sherman F. Amino acid replacements in yeast iso-1-cytochrome c. Comparison with the phylogenetic series and the tertiary structure of related cytochromes c. J Biol Chem. 1986 Mar 5;261(7):3259–3271. [PubMed] [Google Scholar]
- Hastings P. J. Measurement of restoration and conversion: its meaning for the mismatch repair hypothesis of conversion. Cold Spring Harb Symp Quant Biol. 1984;49:49–53. doi: 10.1101/sqb.1984.049.01.008. [DOI] [PubMed] [Google Scholar]
- Kramer B., Kramer W., Fritz H. J. Different base/base mismatches are corrected with different efficiencies by the methyl-directed DNA mismatch-repair system of E. coli. Cell. 1984 Oct;38(3):879–887. doi: 10.1016/0092-8674(84)90283-6. [DOI] [PubMed] [Google Scholar]
- Kurjan J., Hall B. D. Mutations at the Saccharomyces cerevisiae SUP4 tRNA(Tyr) locus: isolation, genetic fine-structure mapping, and correlation with physical structure. Mol Cell Biol. 1982 Dec;2(12):1501–1513. doi: 10.1128/mcb.2.12.1501. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Lacks S. A., Dunn J. J., Greenberg B. Identification of base mismatches recognized by the heteroduplex-DNA-repair system of Streptococcus pneumoniae. Cell. 1982 Dec;31(2 Pt 1):327–336. doi: 10.1016/0092-8674(82)90126-x. [DOI] [PubMed] [Google Scholar]
- Lieb M., Allen E., Read D. Very short patch mismatch repair in phage lambda: repair sites and length of repair tracts. Genetics. 1986 Dec;114(4):1041–1060. doi: 10.1093/genetics/114.4.1041. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Lieb M. Specific mismatch correction in bacteriophage lambda crosses by very short patch repair. Mol Gen Genet. 1983;191(1):118–125. doi: 10.1007/BF00330898. [DOI] [PubMed] [Google Scholar]
- Lu A. L., Clark S., Modrich P. Methyl-directed repair of DNA base-pair mismatches in vitro. Proc Natl Acad Sci U S A. 1983 Aug;80(15):4639–4643. doi: 10.1073/pnas.80.15.4639. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Luria S. E., Delbrück M. Mutations of Bacteria from Virus Sensitivity to Virus Resistance. Genetics. 1943 Nov;28(6):491–511. doi: 10.1093/genetics/28.6.491. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Moore C. W., Sherman F. Role of DNA sequences in genetic recombination in the iso-1-cytochrome c gene of yeast. I. Discrepancies between physical distances and genetic distances determined by five mapping procedures. Genetics. 1975 Mar;79(3):397–418. doi: 10.1093/genetics/79.3.397. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Muster-Nassal C., Kolodner R. Mismatch correction catalyzed by cell-free extracts of Saccharomyces cerevisiae. Proc Natl Acad Sci U S A. 1986 Oct;83(20):7618–7622. doi: 10.1073/pnas.83.20.7618. [DOI] [PMC free article] [PubMed] [Google Scholar]
- SHERMAN F., ROMAN H. Evidence for two types of allelic recombination in yeast. Genetics. 1963 Feb;48:255–261. doi: 10.1093/genetics/48.2.255. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Schweingruber M. E., Stewart J. W., Sherman F. Primary site and second site revertants of missense mutants of the evolutionarily invariant tryptophan 64 in iso-1-cytochrome c from yeast. J Biol Chem. 1979 May 25;254(10):4132–4143. [PubMed] [Google Scholar]
- Sherman F., Jackson M., Liebman S. W., Schweingruber A. M., Stewart J. W. A deletion map of cyc1 mutants and its correspondence to mutationally altered iso-1-cytochromes c of yeast. Genetics. 1975 Sep;81(1):51–73. doi: 10.1093/genetics/81.1.51. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Sherman F., Stewart J. W., Jackson M., Gilmore R. A., Parker J. H. Mutants of yeast defective in iso-1-cytochrome c. Genetics. 1974 Jun;77(2):255–284. doi: 10.1093/genetics/77.2.255. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Sherman F., Stewart J. W. Variation of mutagenic action on nonsense mutants at different sites in the iso-1-cytochrome c gene of yeast. Genetics. 1974 Sep;78(1):97–113. doi: 10.1093/genetics/78.1.97. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Sicard M., Lefevre J. C., Mostachfi P., Gasc A. M., Sarda C. Localized conversion in Streptococcus pneumoniae recombination: heteroduplex preference. Genetics. 1985 Aug;110(4):557–568. doi: 10.1093/genetics/110.4.557. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Sicard M., Lefèvre J. C., Mostachfi P., Gasc A. M., Méjean V., Claverys J. P. Long- and short-patch gene conversions in Streptococcus pneumoniae transformation. Biochimie. 1985 Mar-Apr;67(3-4):377–384. doi: 10.1016/s0300-9084(85)80084-5. [DOI] [PubMed] [Google Scholar]
- Stewart J. W., Sherman F. Demonstration of UAG as a nonsense codon in bakers' yeast by amino-acid replacements in iso-1-cytochrome c. J Mol Biol. 1972 Jul 28;68(3):429–443. doi: 10.1016/0022-2836(72)90097-6. [DOI] [PubMed] [Google Scholar]
- Stewart J. W., Sherman F., Jackson M., Thomas F. L., Shipman N. Demonstration of the UAA ochre codon in bakers yeast by amino-acid replacements in iso-1-cytochrome c. J Mol Biol. 1972 Jul 14;68(1):83–96. doi: 10.1016/0022-2836(72)90264-1. [DOI] [PubMed] [Google Scholar]
- Wagner R., Dohet C., Jones M., Doutriaux M. P., Hutchinson F., Radman M. Involvement of Escherichia coli mismatch repair in DNA replication and recombination. Cold Spring Harb Symp Quant Biol. 1984;49:611–615. doi: 10.1101/sqb.1984.049.01.069. [DOI] [PubMed] [Google Scholar]