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. 1988 Sep;120(1):255–265. doi: 10.1093/genetics/120.1.255

Many Protein Products from a Few Loci: Assignment of Human Salivary Proline-Rich Proteins to Specific Loci

K M Lyons 1, E A Azen 1, P A Goodman 1, O Smithies 1
PMCID: PMC1203496  PMID: 3220251

Abstract

Earlier studies of protein polymorphisms led to the description of 13 linked loci thought to encode the human salivary proline-rich proteins (PRPs). However, more recent studies at the DNA level have shown that there are only six genes which encode PRPs. The present study was undertaken in order to reconcile these observations. Nucleotide and decoded amino acid sequences from each of the six genes were compared with the available protein sequence data for PRPs. This analysis allowed assignment of the PmF, PmS and Pe proteins to the PRB1 locus, the G1 protein to the PRB3 locus, the Po protein to the PRB4 locus, the Ps protein to the PRB2 locus, and the CON1 and CON2 proteins to the PRB4 locus. Correlations between insertion/deletion RFLPs and PRP protein phenotypes were observed for the PmF, PmS, Gl and CON2 proteins. Our overall analysis indicates that in many instances several proteins previously considered to be the products of separate loci are actually proteolytic cleavage products of a large precursor specified by one or other of the six genes identified at the DNA level. Our analysis also demonstrates that some of the ``null'' alleles proposed to occur at 11 of the 13 loci in the earlier genetic studies, are actually productive alleles having alterations at proteolytic cleavage sites within the relevant precursor protein. The absence of cleavage leads to the persistence of longer precursor peptides not resolved electrophoretically, concurrently with an absence of the smaller PRPs seen when cleavage occurs.

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Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Azen E. A., Denniston C. L. Genetic polymorphism of human salivary proline-rich proteins: further genetic analysis. Biochem Genet. 1974 Aug;12(2):109–120. doi: 10.1007/BF00487820. [DOI] [PubMed] [Google Scholar]
  2. Azen E. A., Denniston C. Genetic polymorphism of PIF (parotid isoelectric focusing variant) proteins with linkage to the PPP (parotid proline-rich protein) gene complex. Biochem Genet. 1981 Jun;19(5-6):475–485. doi: 10.1007/BF00484620. [DOI] [PubMed] [Google Scholar]
  3. Azen E. A., Denniston C. Polymorphism of Ps (parotid size variant) and detection of a protein (PmS) related to the Pm (parotid middle band) system with genetic linkage of Ps and Pm to Gl, Db, and Pr genetic determinants. Biochem Genet. 1980 Jun;18(5-6):483–501. doi: 10.1007/BF00484396. [DOI] [PubMed] [Google Scholar]
  4. Azen E. A., Hurley C. K., Denniston C. Genetic polymorphism of the major parotid salivary glycoprotein (Gl) with linkage to the genes for Pr, Db, and Pa. Biochem Genet. 1979 Apr;17(3-4):257–279. doi: 10.1007/BF00498967. [DOI] [PubMed] [Google Scholar]
  5. Azen E. A., Kim H. S., Goodman P., Flynn S., Maeda N. Alleles at the PRH1 locus coding for the human salivary-acidic proline-rich proteins Pa, Db, and PIF. Am J Hum Genet. 1987 Dec;41(6):1035–1047. [PMC free article] [PubMed] [Google Scholar]
  6. Azen E. A., Oppenheim F. G. Genetic polymorphism of proline-rich human salivary proteins. Science. 1973 Jun 8;180(4090):1067–1069. doi: 10.1126/science.180.4090.1067. [DOI] [PubMed] [Google Scholar]
  7. Azen E. A. Salivary peroxidase (SAPX): genetic modification and relationship to the proline-rich (Pr) and acidic (Pa) proteins. Biochem Genet. 1977 Feb;15(1-2):9–29. doi: 10.1007/BF00484545. [DOI] [PubMed] [Google Scholar]
  8. Azen E. A., Yu P. L. Genetic polymorphisms of Pe and Po salivary proteins with probable linkage of their genes to the salivary protein gene complex (SPC). Biochem Genet. 1984 Dec;22(11-12):1065–1080. doi: 10.1007/BF00499632. [DOI] [PubMed] [Google Scholar]
  9. Azen E., Lyons K. M., McGonigal T., Barrett N. L., Clements L. S., Maeda N., Vanin E. F., Carlson D. M., Smithies O. Clones from the human gene complex coding for salivary proline-rich proteins. Proc Natl Acad Sci U S A. 1984 Sep;81(17):5561–5565. doi: 10.1073/pnas.81.17.5561. [DOI] [PMC free article] [PubMed] [Google Scholar]
  10. Bennick A. Structural and genetic aspects of proline-rich proteins. J Dent Res. 1987 Feb;66(2):457–461. doi: 10.1177/00220345870660021201. [DOI] [PubMed] [Google Scholar]
  11. Bond J. S., Butler P. E. Intracellular proteases. Annu Rev Biochem. 1987;56:333–364. doi: 10.1146/annurev.bi.56.070187.002001. [DOI] [PubMed] [Google Scholar]
  12. Friedman R. D., Merritt A. D., Rivas M. L. Genetic studies of human acidic salivary protein (Pa). Am J Hum Genet. 1975 May;27(3):292–303. [PMC free article] [PubMed] [Google Scholar]
  13. Goodman P. A., Yu P. L., Azen E. A., Karn R. C. The human salivary protein complex (SPC): a large block of related genes. Am J Hum Genet. 1985 Jul;37(4):785–797. [PMC free article] [PubMed] [Google Scholar]
  14. Ikemoto S., Minaguchi K., Suzuki K., Tomita K. New Genetic marker in human parotid saliva (pm). Science. 1977 Jul 22;197(4301):378–379. doi: 10.1126/science.877561. [DOI] [PubMed] [Google Scholar]
  15. Karn R. C., Goodman P. A., Yu P. L. Description of a genetic polymorphism of a human proline-rich salivary protein, Pc, and its relationship to other proteins in the salivary protein complex (SPC). Biochem Genet. 1985 Feb;23(1-2):37–51. doi: 10.1007/BF00499111. [DOI] [PubMed] [Google Scholar]
  16. Kauffman D. L., Keller P. J. The basic proline-rich proteins in human parotid saliva from a single subject. Arch Oral Biol. 1979;24(4):249–256. doi: 10.1016/0003-9969(79)90085-2. [DOI] [PubMed] [Google Scholar]
  17. Kauffman D., Wong R., Bennick A., Keller P. Basic proline-rich proteins from human parotid saliva: complete covalent structure of protein IB-9 and partial structure of protein IB-6, members of a polymorphic pair. Biochemistry. 1982 Dec 7;21(25):6558–6562. doi: 10.1021/bi00268a036. [DOI] [PubMed] [Google Scholar]
  18. Kim H. S., Maeda N. Structures of two HaeIII-type genes in the human salivary proline-rich protein multigene family. J Biol Chem. 1986 May 25;261(15):6712–6718. [PubMed] [Google Scholar]
  19. Lyons K. M., Stein J. H., Smithies O. Length polymorphisms in human proline-rich protein genes generated by intragenic unequal crossing over. Genetics. 1988 Sep;120(1):267–278. doi: 10.1093/genetics/120.1.267. [DOI] [PMC free article] [PubMed] [Google Scholar]
  20. Maeda N. Inheritance of the human salivary proline-rich proteins: a reinterpretation in terms of six loci forming two subfamilies. Biochem Genet. 1985 Jun;23(5-6):455–464. doi: 10.1007/BF00499086. [DOI] [PubMed] [Google Scholar]
  21. Maeda N., Kim H. S., Azen E. A., Smithies O. Differential RNA splicing and post-translational cleavages in the human salivary proline-rich protein gene system. J Biol Chem. 1985 Sep 15;260(20):11123–11130. [PubMed] [Google Scholar]
  22. O'Connell P., Lathrop G. M., Law M., Leppert M., Nakamura Y., Hoff M., Kumlin E., Thomas W., Elsner T., Ballard L. A primary genetic linkage map for human chromosome 12. Genomics. 1987 Sep;1(1):93–102. doi: 10.1016/0888-7543(87)90110-8. [DOI] [PubMed] [Google Scholar]
  23. Poncz M., Solowiejczyk D., Harpel B., Mory Y., Schwartz E., Surrey S. Construction of human gene libraries from small amounts of peripheral blood: analysis of beta-like globin genes. Hemoglobin. 1982;6(1):27–36. doi: 10.3109/03630268208996930. [DOI] [PubMed] [Google Scholar]
  24. Saitoh E., Isemura S., Sanada K. Complete amino acid sequence of a basic proline-rich peptide, P-D, from human parotid saliva. J Biochem. 1983 Feb;93(2):495–502. doi: 10.1093/oxfordjournals.jbchem.a134204. [DOI] [PubMed] [Google Scholar]
  25. Schwartz T. W. The processing of peptide precursors. 'Proline-directed arginyl cleavage' and other monobasic processing mechanisms. FEBS Lett. 1986 May 5;200(1):1–10. doi: 10.1016/0014-5793(86)80500-2. [DOI] [PubMed] [Google Scholar]
  26. Shimomura H., Kanai Y., Sanada K. Amino acid sequences of glycopeptides obtained from basic proline-rich glycoprotein of human parotid saliva. J Biochem. 1983 Mar;93(3):857–863. doi: 10.1093/jb/93.3.857. [DOI] [PubMed] [Google Scholar]
  27. Vanin E. F., Henthorn P. S., Kioussis D., Grosveld F., Smithies O. Unexpected relationships between four large deletions in the human beta-globin gene cluster. Cell. 1983 Dec;35(3 Pt 2):701–709. doi: 10.1016/0092-8674(83)90103-4. [DOI] [PubMed] [Google Scholar]
  28. Wahl G. M., Stern M., Stark G. R. Efficient transfer of large DNA fragments from agarose gels to diazobenzyloxymethyl-paper and rapid hybridization by using dextran sulfate. Proc Natl Acad Sci U S A. 1979 Aug;76(8):3683–3687. doi: 10.1073/pnas.76.8.3683. [DOI] [PMC free article] [PubMed] [Google Scholar]

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