Abstract
Neutral theory predicts a positive correlation between the amount of polymorphism within species and evolutionary rate. Previous tests of this prediction using both allozyme and DNA data have led to conflicting conclusions about the influence of selection and mutation drift. It is argued here that quantitative conclusions about the adequacy of neutral theory can be obtained by analyzing genetic data pooled from many sources. Using this approach, a large database containing information on allozyme variation in over 1500 species is used to examine the relationship between heterozygosity and genetic distance. The results provide support for the hypothesis that a major percentage of protein variation can be explained by variation in neutral mutation rate, and a minor percentage by strong selection.
Full Text
The Full Text of this article is available as a PDF (1.4 MB).
Selected References
These references are in PubMed. This may not be the complete list of references from this article.
- Begun D. J., Aquadro C. F. Molecular population genetics of the distal portion of the X chromosome in Drosophila: evidence for genetic hitchhiking of the yellow-achaete region. Genetics. 1991 Dec;129(4):1147–1158. doi: 10.1093/genetics/129.4.1147. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Brady J. P., Richmond R. C., Oakeshott J. G. Cloning of the esterase-5 locus from Drosophila pseudoobscura and comparison with its homologue in D. melanogaster. Mol Biol Evol. 1990 Nov;7(6):525–546. doi: 10.1093/oxfordjournals.molbev.a040624. [DOI] [PubMed] [Google Scholar]
- Chakraborty R., Fuerst P. A., Nei M. Statistical Studies on Protein Polymorphism in Natural Populations II. Gene Differentiation between Populations. Genetics. 1978 Feb;88(2):367–390. doi: 10.1093/genetics/88.2.367. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Chakraborty R., Fuerst P. A., Nei M. Statistical Studies on Protein Polymorphism in Natural Populations. III. Distribution of Allele Frequencies and the Number of Alleles per Locus. Genetics. 1980 Apr;94(4):1039–1063. doi: 10.1093/genetics/94.4.1039. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Chakraborty R., Hedrick P. W. Heterozygosity and genetic distance of proteins. Nature. 1983 Aug 25;304(5928):755–756. doi: 10.1038/304755a0. [DOI] [PubMed] [Google Scholar]
- Chakraborty R. Relationship between heterozygosity and genetic distance in the three major races of man. Am J Phys Anthropol. 1984 Nov;65(3):249–258. doi: 10.1002/ajpa.1330650304. [DOI] [PubMed] [Google Scholar]
- Dover G. A. Three into two won't go. Nature. 1988 Jan 14;331(6152):121–122. doi: 10.1038/331121a0. [DOI] [PubMed] [Google Scholar]
- Fuerst P. A., Chakraborty R., Nei M. Statistical studies on protein polymorphism in natural populations. I. Distribution of single locus heterozygosity. Genetics. 1977 Jun;86(2 Pt 1):455–483. [PMC free article] [PubMed] [Google Scholar]
- Gillespie J. H. Could natural selection account for molecular evolution and polymorphism? Genome. 1989;31(1):311–315. doi: 10.1139/g89-049. [DOI] [PubMed] [Google Scholar]
- Gillespie J. H. The molecular clock may be an episodic clock. Proc Natl Acad Sci U S A. 1984 Dec;81(24):8009–8013. doi: 10.1073/pnas.81.24.8009. [DOI] [PMC free article] [PubMed] [Google Scholar]
- KIMURA M., CROW J. F. THE NUMBER OF ALLELES THAT CAN BE MAINTAINED IN A FINITE POPULATION. Genetics. 1964 Apr;49:725–738. doi: 10.1093/genetics/49.4.725. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Kimura M. The neutral theory of molecular evolution and the world view of the neutralists. Genome. 1989;31(1):24–31. doi: 10.1139/g89-009. [DOI] [PubMed] [Google Scholar]
- Lewontin R. C. Twenty-five years ago in Genetics: electrophoresis in the development of evolutionary genetics: milestone or millstone? Genetics. 1991 Aug;128(4):657–662. doi: 10.1093/genetics/128.4.657. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Livshits G., Nei M. Relationships between intrapopulational and interpopulational genetic diversity in man. Ann Hum Biol. 1990 Nov-Dec;17(6):501–513. doi: 10.1080/03014469000001272. [DOI] [PubMed] [Google Scholar]
- Martín-Campos J. M., Comerón J. M., Miyashita N., Aguadé M. Intraspecific and interspecific variation at the y-ac-sc region of Drosophila simulans and Drosophila melanogaster. Genetics. 1992 Apr;130(4):805–816. doi: 10.1093/genetics/130.4.805. [DOI] [PMC free article] [PubMed] [Google Scholar]
- McDonald J. H., Kreitman M. Adaptive protein evolution at the Adh locus in Drosophila. Nature. 1991 Jun 20;351(6328):652–654. doi: 10.1038/351652a0. [DOI] [PubMed] [Google Scholar]
- Mukherjee M., Skibinski D. O., Ward R. D. A simulation study of the neutral evolution of heterozygosity and genetic distance. Heredity (Edinb) 1987 Jun;58(Pt 3):413–423. doi: 10.1038/hdy.1987.70. [DOI] [PubMed] [Google Scholar]
- Ohta T., Kimura M. A model of mutation appropriate to estimate the number of electrophoretically detectable alleles in a finite population. Genet Res. 1973 Oct;22(2):201–204. doi: 10.1017/s0016672300012994. [DOI] [PubMed] [Google Scholar]
- Ohta T., Tachida H. Theoretical study of near neutrality. I. Heterozygosity and rate of mutant substitution. Genetics. 1990 Sep;126(1):219–229. doi: 10.1093/genetics/126.1.219. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Ohta T. Theoretical study of near neutrality. II. Effect of subdivided population structure with local extinction and recolonization. Genetics. 1992 Apr;130(4):917–923. doi: 10.1093/genetics/130.4.917. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Riley M. A. Nucleotide sequence of the Xdh region in Drosophila pseudoobscura and an analysis of the evolution of synonymous codons. Mol Biol Evol. 1989 Jan;6(1):33–52. doi: 10.1093/oxfordjournals.molbev.a040529. [DOI] [PubMed] [Google Scholar]
- Tachida H. A study on a nearly neutral mutation model in finite populations. Genetics. 1991 May;128(1):183–192. doi: 10.1093/genetics/128.1.183. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Woodwark M., Skibinski D. O., Ward R. D. A study of interlocus allozyme heterozygosity correlations: implications for neutral theory. Heredity (Edinb) 1992 Aug;69(Pt 2):190–198. doi: 10.1038/hdy.1992.113. [DOI] [PubMed] [Google Scholar]