Abstract
Mitochondrial DNA (mtDNA) sequence variation was examined in Finns, Swedes and Tuscans by PCR amplification and restriction analysis. About 99% of the mtDNAs were subsumed within 10 mtDNA haplogroups (H, I, J, K, M, T, U, V, W, and X) suggesting that the identified haplogroups could encompass virtually all European mtDNAs. Because both hypervariable segments of the mtDNA control region were previously sequenced in the Tuscan samples, the mtDNA haplogroups and control region sequences could be compared. Using a combination of haplogroup-specific restriction site changes and control region nucleotide substitutions, the distribution of the haplogroups was surveyed through the published restriction site polymorphism and control region sequence data of Caucasoids. This supported the conclusion that most haplogroups observed in Europe are Caucasoid-specific, and that at least some of them occur at varying frequencies in different Caucasoid populations. The classification of almost all European mtDNA variation in a number of well defined haplogroups could provide additional insights about the origin and relationships of Caucasoid populations and the process of human colonization of Europe, and is valuable for the definition of the role played by mtDNA backgrounds in the expression of pathological mtDNA mutations
Full Text
The Full Text of this article is available as a PDF (1.5 MB).
Selected References
These references are in PubMed. This may not be the complete list of references from this article.
- Anderson S., Bankier A. T., Barrell B. G., de Bruijn M. H., Coulson A. R., Drouin J., Eperon I. C., Nierlich D. P., Roe B. A., Sanger F. Sequence and organization of the human mitochondrial genome. Nature. 1981 Apr 9;290(5806):457–465. doi: 10.1038/290457a0. [DOI] [PubMed] [Google Scholar]
- Astrinidis A., Kouvatsi A. Mitochondrial DNA polymorphism in northern Greece. Hum Biol. 1994 Aug;66(4):601–611. [PubMed] [Google Scholar]
- Bandelt H. J., Forster P., Sykes B. C., Richards M. B. Mitochondrial portraits of human populations using median networks. Genetics. 1995 Oct;141(2):743–753. doi: 10.1093/genetics/141.2.743. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Barbujani G., Bertorelle G., Capitani G., Scozzari R. Geographical structuring in the mtDNA of Italians. Proc Natl Acad Sci U S A. 1995 Sep 26;92(20):9171–9175. doi: 10.1073/pnas.92.20.9171. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Bertranpetit J., Sala J., Calafell F., Underhill P. A., Moral P., Comas D. Human mitochondrial DNA variation and the origin of Basques. Ann Hum Genet. 1995 Jan;59(Pt 1):63–81. doi: 10.1111/j.1469-1809.1995.tb01606.x. [DOI] [PubMed] [Google Scholar]
- Brockington M., Sweeney M. G., Hammans S. R., Morgan-Hughes J. A., Harding A. E. A tandem duplication in the D-loop of human mitochondrial DNA is associated with deletions in mitochondrial myopathies. Nat Genet. 1993 May;4(1):67–71. doi: 10.1038/ng0593-67. [DOI] [PubMed] [Google Scholar]
- Cann R. L., Stoneking M., Wilson A. C. Mitochondrial DNA and human evolution. Nature. 1987 Jan 1;325(6099):31–36. doi: 10.1038/325031a0. [DOI] [PubMed] [Google Scholar]
- Cavalli-Sforza L. L., Piazza A. Human genomic diversity in Europe: a summary of recent research and prospects for the future. Eur J Hum Genet. 1993;1(1):3–18. doi: 10.1159/000472383. [DOI] [PubMed] [Google Scholar]
- Chen Y. S., Torroni A., Excoffier L., Santachiara-Benerecetti A. S., Wallace D. C. Analysis of mtDNA variation in African populations reveals the most ancient of all human continent-specific haplogroups. Am J Hum Genet. 1995 Jul;57(1):133–149. [PMC free article] [PubMed] [Google Scholar]
- Comas D., Päbo S., Bertranpetit J. Heteroplasmy in the control region of human mitochondrial DNA. Genome Res. 1995 Aug;5(1):89–90. doi: 10.1101/gr.5.1.89. [DOI] [PubMed] [Google Scholar]
- Di Rienzo A., Wilson A. C. Branching pattern in the evolutionary tree for human mitochondrial DNA. Proc Natl Acad Sci U S A. 1991 Mar 1;88(5):1597–1601. doi: 10.1073/pnas.88.5.1597. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Giles R. E., Blanc H., Cann H. M., Wallace D. C. Maternal inheritance of human mitochondrial DNA. Proc Natl Acad Sci U S A. 1980 Nov;77(11):6715–6719. doi: 10.1073/pnas.77.11.6715. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Graven L., Passarino G., Semino O., Boursot P., Santachiara-Benerecetti S., Langaney A., Excoffier L. Evolutionary correlation between control region sequence and restriction polymorphisms in the mitochondrial genome of a large Senegalese Mandenka sample. Mol Biol Evol. 1995 Mar;12(2):334–345. doi: 10.1093/oxfordjournals.molbev.a040206. [DOI] [PubMed] [Google Scholar]
- Handt O., Richards M., Trommsdorff M., Kilger C., Simanainen J., Georgiev O., Bauer K., Stone A., Hedges R., Schaffner W. Molecular genetic analyses of the Tyrolean Ice Man. Science. 1994 Jun 17;264(5166):1775–1778. doi: 10.1126/science.8209259. [DOI] [PubMed] [Google Scholar]
- Hedges S. B., Kumar S., Tamura K., Stoneking M. Human origins and analysis of mitochondrial DNA sequences. Science. 1992 Feb 7;255(5045):737–739. doi: 10.1126/science.1738849. [DOI] [PubMed] [Google Scholar]
- Horai S., Kondo R., Nakagawa-Hattori Y., Hayashi S., Sonoda S., Tajima K. Peopling of the Americas, founded by four major lineages of mitochondrial DNA. Mol Biol Evol. 1993 Jan;10(1):23–47. doi: 10.1093/oxfordjournals.molbev.a039987. [DOI] [PubMed] [Google Scholar]
- Hutchin T., Cortopassi G. A mitochondrial DNA clone is associated with increased risk for Alzheimer disease. Proc Natl Acad Sci U S A. 1995 Jul 18;92(15):6892–6895. doi: 10.1073/pnas.92.15.6892. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Lauber J., Marsac C., Kadenbach B., Seibel P. Mutations in mitochondrial tRNA genes: a frequent cause of neuromuscular diseases. Nucleic Acids Res. 1991 Apr 11;19(7):1393–1397. doi: 10.1093/nar/19.7.1393. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Miyata T., Hayashida H., Kikuno R., Hasegawa M., Kobayashi M., Koike K. Molecular clock of silent substitution: at least six-fold preponderance of silent changes in mitochondrial genes over those in nuclear genes. J Mol Evol. 1982;19(1):28–35. doi: 10.1007/BF02100221. [DOI] [PubMed] [Google Scholar]
- Mountain J. L., Hebert J. M., Bhattacharyya S., Underhill P. A., Ottolenghi C., Gadgil M., Cavalli-Sforza L. L. Demographic history of India and mtDNA-sequence diversity. Am J Hum Genet. 1995 Apr;56(4):979–992. [PMC free article] [PubMed] [Google Scholar]
- Nei M., Tajima F. Maximum likelihood estimation of the number of nucleotide substitutions from restriction sites data. Genetics. 1983 Sep;105(1):207–217. doi: 10.1093/genetics/105.1.207. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Passarino G., Semino O., Bernini L. F., Santachiara-Benerecetti A. S. Pre-Caucasoid and Caucasoid genetic features of the Indian population, revealed by mtDNA polymorphisms. Am J Hum Genet. 1996 Oct;59(4):927–934. [PMC free article] [PubMed] [Google Scholar]
- Piazza A. Who are the Europeans? Science. 1993 Jun 18;260(5115):1767–1769. doi: 10.1126/science.8511584. [DOI] [PubMed] [Google Scholar]
- Ritte U., Neufeld E., Prager E. M., Gross M., Hakim I., Khatib A., Bonné-Tamir B. Mitochondrial DNA affinity of several Jewish communities. Hum Biol. 1993 Jun;65(3):359–385. [PubMed] [Google Scholar]
- Sajantila A., Lahermo P., Anttinen T., Lukka M., Sistonen P., Savontaus M. L., Aula P., Beckman L., Tranebjaerg L., Gedde-Dahl T. Genes and languages in Europe: an analysis of mitochondrial lineages. Genome Res. 1995 Aug;5(1):42–52. doi: 10.1101/gr.5.1.42. [DOI] [PubMed] [Google Scholar]
- Santachiara Benerecetti A. S., Scozzari R., Semino O., Torroni A., Brega A., Wallace D. C. Mitochondrial DNA polymorphisms in Italy. II. Molecular analysis of new and rare morphs from Sardinia and Rome. Ann Hum Genet. 1988 Jan;52(Pt 1):39–56. doi: 10.1111/j.1469-1809.1988.tb01076.x. [DOI] [PubMed] [Google Scholar]
- Semino O., Torroni A., Scozzari R., Brega A., De Benedictis G., Santachiara Benerecetti A. S. Mitochondrial DNA polymorphisms in Italy. III. Population data from Sicily: a possible quantitation of maternal African ancestry. Ann Hum Genet. 1989 May;53(Pt 2):193–202. doi: 10.1111/j.1469-1809.1989.tb01784.x. [DOI] [PubMed] [Google Scholar]
- Semino O., Torroni A., Scozzari R., Brega A., Santachiara Benerecetti A. S. Mitochondrial DNA polymorphisms among Hindus: a comparison with the Tharus of Nepal. Ann Hum Genet. 1991 May;55(Pt 2):123–136. doi: 10.1111/j.1469-1809.1991.tb00405.x. [DOI] [PubMed] [Google Scholar]
- Shoffner J. M., Brown M. D., Torroni A., Lott M. T., Cabell M. F., Mirra S. S., Beal M. F., Yang C. C., Gearing M., Salvo R. Mitochondrial DNA variants observed in Alzheimer disease and Parkinson disease patients. Genomics. 1993 Jul;17(1):171–184. doi: 10.1006/geno.1993.1299. [DOI] [PubMed] [Google Scholar]
- Sokal R. R., Oden N. L., Wilson C. Genetic evidence for the spread of agriculture in Europe by demic diffusion. Nature. 1991 May 9;351(6322):143–145. doi: 10.1038/351143a0. [DOI] [PubMed] [Google Scholar]
- Soodyall H., Vigilant L., Hill A. V., Stoneking M., Jenkins T. mtDNA control-region sequence variation suggests multiple independent origins of an "Asian-specific" 9-bp deletion in sub-Saharan Africans. Am J Hum Genet. 1996 Mar;58(3):595–608. [PMC free article] [PubMed] [Google Scholar]
- Stone A. C., Stoneking M. Ancient DNA from a pre-Columbian Amerindian population. Am J Phys Anthropol. 1993 Dec;92(4):463–471. doi: 10.1002/ajpa.1330920405. [DOI] [PubMed] [Google Scholar]
- Stoneking M., Jorde L. B., Bhatia K., Wilson A. C. Geographic variation in human mitochondrial DNA from Papua New Guinea. Genetics. 1990 Mar;124(3):717–733. doi: 10.1093/genetics/124.3.717. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Torroni A., Chen Y. S., Semino O., Santachiara-Beneceretti A. S., Scott C. R., Lott M. T., Winter M., Wallace D. C. mtDNA and Y-chromosome polymorphisms in four Native American populations from southern Mexico. Am J Hum Genet. 1994 Feb;54(2):303–318. [PMC free article] [PubMed] [Google Scholar]
- Torroni A., Miller J. A., Moore L. G., Zamudio S., Zhuang J., Droma T., Wallace D. C. Mitochondrial DNA analysis in Tibet: implications for the origin of the Tibetan population and its adaptation to high altitude. Am J Phys Anthropol. 1994 Feb;93(2):189–199. doi: 10.1002/ajpa.1330930204. [DOI] [PubMed] [Google Scholar]
- Torroni A., Neel J. V., Barrantes R., Schurr T. G., Wallace D. C. Mitochondrial DNA "clock" for the Amerinds and its implications for timing their entry into North America. Proc Natl Acad Sci U S A. 1994 Feb 1;91(3):1158–1162. doi: 10.1073/pnas.91.3.1158. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Torroni A., Schurr T. G., Yang C. C., Szathmary E. J., Williams R. C., Schanfield M. S., Troup G. A., Knowler W. C., Lawrence D. N., Weiss K. M. Native American mitochondrial DNA analysis indicates that the Amerind and the Nadene populations were founded by two independent migrations. Genetics. 1992 Jan;130(1):153–162. doi: 10.1093/genetics/130.1.153. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Torroni A., Sukernik R. I., Schurr T. G., Starikorskaya Y. B., Cabell M. F., Crawford M. H., Comuzzie A. G., Wallace D. C. mtDNA variation of aboriginal Siberians reveals distinct genetic affinities with Native Americans. Am J Hum Genet. 1993 Sep;53(3):591–608. [PMC free article] [PubMed] [Google Scholar]
- Torroni A., Wallace D. C. Mitochondrial DNA variation in human populations and implications for detection of mitochondrial DNA mutations of pathological significance. J Bioenerg Biomembr. 1994 Jun;26(3):261–271. doi: 10.1007/BF00763098. [DOI] [PubMed] [Google Scholar]
- Vigilant L., Stoneking M., Harpending H., Hawkes K., Wilson A. C. African populations and the evolution of human mitochondrial DNA. Science. 1991 Sep 27;253(5027):1503–1507. doi: 10.1126/science.1840702. [DOI] [PubMed] [Google Scholar]
- Wallace D. C. 1994 William Allan Award Address. Mitochondrial DNA variation in human evolution, degenerative disease, and aging. Am J Hum Genet. 1995 Aug;57(2):201–223. [PMC free article] [PubMed] [Google Scholar]
- Ward R. H., Frazier B. L., Dew-Jager K., Päbo S. Extensive mitochondrial diversity within a single Amerindian tribe. Proc Natl Acad Sci U S A. 1991 Oct 1;88(19):8720–8724. doi: 10.1073/pnas.88.19.8720. [DOI] [PMC free article] [PubMed] [Google Scholar]
- de Benedictis G., Rose G., Passarino G., Quagliariello C. Restriction fragment length polymorphism of human mitochondrial DNA in a sample population from Apulia (southern Italy). Ann Hum Genet. 1989 Oct;53(Pt 4):311–318. doi: 10.1111/j.1469-1809.1989.tb01800.x. [DOI] [PubMed] [Google Scholar]
- de la Chapelle A. Disease gene mapping in isolated human populations: the example of Finland. J Med Genet. 1993 Oct;30(10):857–865. doi: 10.1136/jmg.30.10.857. [DOI] [PMC free article] [PubMed] [Google Scholar]