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. 2025 May 12;147(20):16747–16753. doi: 10.1021/jacs.5c03044

Pd-Catalyzed Photoinduced Interceptive Decarboxylative Allylation

Franz-Lucas Haut #, Filip S Meger #,§, Tomás G Santiago #, Paula Fraňová #, Daniel Kocsi #, Joan V Estornell #,§, Marta Martínez-Belmonte #, Jordi Benet-Buchholz #, Ruben Martin #,§,†,*
PMCID: PMC12100718  PMID: 40354262

Abstract

Herein, we describe a photoinduced Pd-catalyzed interceptive decarboxylative allylation of allyl esters. Our protocol provides a new gateway to enable atom pair swaps or a series of contractions and elongations, thus offering unconventional disconnections and a modular yet broadly applicable tool for rapidly and reliably accessing sp 3 architectures in drug discovery.


graphic file with name ja5c03044_0008.jpg


The ability to rapidly and reliably generate molecular complexity from simple precursors is central in organic synthesis. A particularly attractive endeavor is the design of techniques that engineer molecules by deleting, incorporating, or swapping atoms in their core structures with predictable site-selectivity. Despite the advances realized with heteroarenes (Scheme , path a), , atom-pair mutations that forge sp 3-fragments predominantly rely on stoichiometric promoters, cyclic amines, or ring-strain release. Given that an increased number of sp 3 -hybridized carbons improves several molecular attributes that contribute to clinical success, a catalytic, yet broadly applicable, transformation that forges sp 3 -architectures from simple acyclic saturated motifs might constitute a rewarding strategy in drug discovery (path b).

1. Atom-Pair Mutations for 2D- and 3D-Space.

1

Driven by the seminal work of Tsuji and Saegusa, Pd-catalyzed decarboxylative allylations (DcA) have reached remarkable levels of sophistication. While interceptive decarboxylative allylations (IDcA) might offer a new vehicle for enabling atom-pair mutations in simple acyclic allyl esters, , these processes currently rely on two-electron manifolds requiring esters with electron-poor groups (Scheme , top left). Notwithstanding the improved modularity of open-shell species for bond formation when compared to two-electron manifolds, a one-electron catalytic IDcA strategy currently constitutes an uncharted cartography (top right). If successful, such a protocol would not only expand the repertoire of atom-pair swap strategies beyond heteroarenes (Scheme , path a) but also offer new retrosynthetic disconnections when forging sp 3 -architectures. We hypothesized that a Pd-catalyzed photoinduced decarboxylation of allyl esters with appropriate olefin acceptors might be suited for our purposes, resulting in two consecutive sp 3 –sp 3 bond-forming reactions with a net loss of CO2 (Scheme , bottom). We anticipated that a photoinduced one-electron decarboxylation of I en route to III might not only overcome existing limitations in classical IDcA but also offer opportunities for accessing new chemical space when building up sp 3 -architectures. Herein, we report the realization of this goal, culminating in a broadly applicable protocol that results in not only an atom-pair swap but also a series of contractions and elongations depending on the substrate and acceptor utilized.

2. Decarboxylative sp 3 Mutations in Allyl Esters.

2

Our investigations began by evaluating the photoinduced IDcA of 1a with 2a (Table ). At the outset of our investigations, it was not clear whether 3a could be easily within reach given the propensity of in situ generated alkyl open species toward undesired homocoupling of allyl radical intermediates, , one-electron DcA (3a″), Giese-type additions (3a′), or unproductive hydrogen-atom transfer (HAT). After some experimentation, a combination of Pd2(dba)3 (1.25 mol %), L1 (3.75 mol %),PC1 (1 mol %), and K2CO3 (1.0 equiv) in DMF (0.1 M) at 20 °C under blue light-emitting diode (LED) irradiation afforded 3a in 80% isolated yield. Although similar yields were obtained with L2 or PPh3 (entries 2 and 3), poor results were found with a Pd/L3 regime. In all of these cases, however, non-negligible amounts of 3a′ and 3a″ were obtained in the crude mixtures. Moreover, not even traces of 3a were obtained with P­(OPh)3 as the ligand (entry 5). In addition, Pd precatalysts, bases, and solvents other than Pd2(dba)3, K2CO3, and DMF resulted in markedly lower yields of 3a (entries 6–10). Likewise, the utilization of 4CzIPN instead of PC1 did not improve the results (entry 11). As anticipated, control experiments revealed that the Pd source, L1, and light irradiation were required for the reaction to occur (entry 12). The lack of reactivity in the absence of photocatalyst reinforces its critical role for accessing III and V via single-electron transfer (SET) events (Scheme ).

1. Optimization of the Reaction Conditions .

graphic file with name ja5c03044_0006.jpg

a

Conditions: 1a (0.10 mmol), 2a (0.12 mmol), PC1 (1 mol %), Pd2(dba)3 (1.25 mol %), L1 (3.75 mol %), and K2CO3 (0.10 mmol) in DMF (0.1 M) at 20 °C under 451 nm blue LED irradiation for 16 h.

b

GC yield using dodecane as internal standard.

c

Isolated yield, 0.2 mmol scale, 4 h.

Next, we turned our attention to assessing the generality of our photoinduced IDcA of allyl esters. As shown in Table , our protocol could accommodate a variety of functional groups, including alcohols (1s), aryl halides (3q, 5d, 5e) or boronic esters (5o), among others. In addition, the reaction could be conducted with allyl esters containing heterocyclic cores such as tetrahydropyrans (3b), piperidines (3c, 3d), oxetanes (3e), or caged structures (3f). Importantly, our method was amenable to scale-up, delivering 3d in 78% yield at 5 mmol scale. Equally interesting is the ability to promote rapid diversification of various α-amino acids, resulting in a formal homologation that results in the corresponding γ-amino acid congeners 3h3o in one step with yields up to 95%. Moreover, α-keto esters or α-oxy esters could also be utilized as counterparts; while the former led to 3t in 57% yield, the use of the latter enabled the incorporation of two-carbon fragments in advanced compounds such as bezafibrate (3q) or ciprofibrate (3r). In addition, the preparation of 3s illustrates that the reaction not only tolerates alcohol motifs but might also be leveraged as a new entry point to prepare lactones in one pot. The successful preparation of 3u3w stands as a testament that sp 3sp 3 bond formation can be conducted at primary alkyl sites, albeit in lower yields. As shown for 4a4d, allyl esters bearing 1,1-disubstituted olefins posed no problems. Next, we evaluated the influence of the electron acceptor on the reaction. As shown in Table , a variety of 2-aryl acrylates could be used as acceptors, delivering the targeted products 5a5g in good yields, even with advanced synthetic intermediates (5h). Although one might argue that the coexistence of halogen atoms and low-valent Pd species might interfere with the targeted photoinduced IDcA strategy, this was not the case, and 3q, 4b, 5d, and 5e were all prepared in good yields, thus providing additional functional handles for further transformations via conventional metal-catalyzed cross-couplings. As illustrated by the successful preparation of 5i and 5j, our protocol could be extended to 2-alkyl acrylates with a similar ease. Equally effective was the reaction with electron acceptors bearing ketones (5m), amides (5l), or boronic esters (5o). A simple exposure to TFA in the former afforded 1-pyrroline 5n in 71% yield, whereas the latter provides an additional handle for subsequent manipulation via conventional C–B cleavage. Even the utilization of simple monosubstituted styrenes posed no problems, delivering 5p in 50% yield. The synthesis of 5k is particularly important, as it formally enables the incorporation of an α-amino acid function by means of a decarboxylative olefin insertion into simple allyl esters. Interestingly, high yields and linear selectivities (E/Z = 20:1) could be obtained regardless of whether E/Z-disubstituted olefins (1y) or α-branched congeners (1x) were utilized in the allyl ester backbone, a phenomenon previously observed in two-electron manifolds (Table , bottom). Further studies revealed the successful incorporation of substrates bearing carbamates (6a6d), halogens (6e), or silyl ethers (6f). Even the presence of styrenes or cyclohexenes did not interfere with productive IDcA reaction, giving rise to the targeted compounds 6g and 6h in good yields.

2. Formal Atom Pair Swap via Photoinduced One-Electron IDcA of Allyl Esters with Olefin Acceptors .

graphic file with name ja5c03044_0007.jpg

a

Allyl ester (0.20 mmol), olefin acceptor (1.20 equiv), Pd2(dba)3 (1.25 mol %), L1 (3.75 mol %), PC1 (1 mol %), and K2CO3 (1 equiv) in DMF (0.1 M) at 20 °C under 451 nm blue LED irradiation (1 W) for 12–18 h. Isolated yields are an average of at least two independent runs.

b

4 h reaction time.

c

PC1 (2.5 mol %).

d

Pd2(dba)3 (2.5 mol %) and L1 (7.5 mol %).

e

5 mmol scale with two 427 nm Kessil lamp irradiation (45 W) for 18 h.

f

PC1 (5.0 mol %) with 427 nm 45W blue-LED irradiation for 72 h.

g

2a (3.0 equiv).

h

Utilizing 4CzIPN (2.5 mol %).

i

Boc deprotection with TFA at rt for 1 h.

j

2o (2.5 equiv), and no K2CO3 was utilized.

k

Utilizing α-branched allyl ester as precursor.

l

Utilizing (E)-linear allyl esters as precursors.

m

Utilizing (Z)-linear allyl esters as precursor.

Encouraged by these results, we anticipated that our strategy could be expanded beyond an atom-pair swap in conventional IDcA reactions. As shown in Scheme , this turned out to be the case. Specifically, the utilization of pyruvic acid derivative (7a) resulted in a one-atom contraction via CO and CO2 extrusion, leading to 8a in 57% yield. In addition, a two-atom contraction could be within reach from 7b, giving rise to 8b via 2-fold extrusion of CO2. Moreover, a two-atom elongation could be accomplished by utilizing 1,3-diene 2b as acceptor, resulting in the incorporation of a four-carbon fragment. The modularity and versatility of our strategy are further illustrated in Scheme . Specifically, exposure of boron-containing 5o to NaBO3·4H2O resulted in 8d in 60% yield. Similarly, a Hofmann rearrangement of 5l bearing an amide function cleanly delivered 8e. These results are particularly noteworthy given that the means to access 8d and 8e can formally be visualized as a polarity-mismatched radical addition, which readily incorporates the enol form of acetophenone or an enamine as counterparts in an IDcA-type scenario. The flexibility of our protocol is further illustrated in the preparation of 8h via two consecutive photoinduced IDcA events that forge four different sp 3 –sp 3 linkages.

3. Beyond Conventional IDcA Reactions.

3

4. Postmodification Events.

4

a NaBO3·4H2O (3 equiv), THF:H2O (1:1, 0.075 M), rt, 6 h.

b PhI­(OAc)2 (1.2 equiv), KOH (2 equiv), MeOH (0.1 M), 60 °C, 30 min.

c BCl3 (3.3 equiv), CH2Cl2 (0.1 M), 0 °C, 4 h.

d (i) Allyl bromide (2.5 equiv), K2CO3 (2.5 equiv), DMF (0.3 M), rt, 18 h; (ii) allyl ester (0.2 mmol), 2a (1.2 equiv), Pd2(dba)3 (2.50 mol %), L1 (7.50 mol %), 4CzIPN (5 mol %), K2CO3 (1 equiv) in DMF (0.1 M) at 20 °C under 451 nm blue LED irradiation (1 W) for 18 h.

Next, we turned our attention to studying the underpinnings of our photoinduced IDcA reaction (Scheme ). To this end, we evaluated the reactivity of 9a with Pd-1 and Pd-2 which were easily synthesized by simple salt metathesis of allylPdCl dimer with AgOPiv followed by addition of L2 or L3. Interestingly, low yields of 8a were obtained regardless of whether Pd-1 was utilized in a stoichiometric or catalytic manner, likely due to the inherent low stability of the monoligated Pd center. It is worth noting, however, that the reaction could be significantly improved in the presence of 10 mol % of L2 (85% yield) or L3 (77% yield). These results reinforce the notion that coordination of two phosphine fragments to the Pd center is particularly important for the reaction to occur, an observation that likely suggests the intermediacy of cationic π-allyl complexes (II, Scheme ) via dissociation of the pivalate fragment at the coordination sphere of the Pd center. This observation was indirectly corroborated by obtaining substantial amounts of 8a by exposure of 9a to Pd-2 (5 mol %). The formation of III (Scheme ) was inferred from radical-clock experiments, exclusively leading to 10a from 9b. Moreover, the radical-polar crossover via V (Scheme ) was assessed by exposure of 1h to (3,3,3-trifluoroprop-1-en-2-yl)­benzene 11a, resulting in clean formation of 12a by rapid β-fluoride elimination from VI.

5. Preliminary Mechanistic Studies.

5

a All reactions conducted at 0.10 mmol scale in MeCN (0.1 M) at 20 °C under 451 nm blue LED irradiation (1 W) for 4 h. Full conversion of 9a or Pd-1 was observed in all cases.

b 0.025 mmol scale, PC1 (10 mol %).

In summary, we have developed a de novo Pd-catalyzed photoinduced one-electron IDcA for simple acyclic allyl esters. The method is characterized by its mild conditions and broad scope, offering a new entry point to enable either a formal atom-pair swap or a series of atom contractions and elongations, depending on the substrate and electron-acceptor utilized. This strategy not only expands our repertoire in IDcA reactions but also facilitates rapid and reliable access to architectures of relevance in medicinal chemistry via unconventional bond disconnections. Further extensions to other related processes are underway in our laboratory.

Supplementary Material

ja5c03044_si_001.pdf (14.5MB, pdf)

Acknowledgments

We thank ICIQ, FEDER/MCI PID2021-123801NB-I00, PID 2019-110008GB-I00, and MCI/AIE (Severo Ochoa Excellence Accreditation 2002–2023, CEX2019-000925-S) and European Union’s Horizon 2020 research and innovation program (grant agreement 883756) for financial support. F.-L.H. thanks the Alexander von Humboldt Foundation for a Feodor Lynen Research Fellowship. P.F., F.S.M., and J.V.E. thank the Slovak Academic Information Agency (SAIA) for a research mobility grant and for predoctoral fellowships (PRE2022-101700 and FPU22/02453). We sincerely thank the ICIQ X-ray Diffraction, NMR, and Mass Spectrometry units.

Glossary

ABBREVIATIONS

Cbz

carbazole

Mes

mesityl

dba

dibenzylideneacetone

dmdba

bis­(3,5,3,5-dimethoxy­dibenzylideneacetone)

TFA

trifluoroacetic acid

PIDA

(diacetoxyiodo)­benzene

The Supporting Information is available free of charge at https://pubs.acs.org/doi/10.1021/jacs.5c03044.

  • Experimental procedures; spectral and crystallographic data (PDF)

F.-L.H. and F.S.M. contributed equally.

The authors declare no competing financial interest.

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