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PLOS One logoLink to PLOS One
. 2025 May 28;20(5):e0325081. doi: 10.1371/journal.pone.0325081

A recent update on the morphological classification of intraductal papillary neoplasm of the bile duct: Correlation with postoperative prognosis and pathological features

Daisuke Noguchi 1, Naohisa Kuriyama 1,*, Yuji Kozuka 2, Haruna Komatubara 1, Tatsuya Sakamoto 1, Takahiro Ito 1, Aoi Hayasaki 1, Yusuke Iizawa 1, Takehiro Fujii 1, Akihiro Tanemura 1, Yasuhiro Murata 1, Masashi Kishiwada 1, Shugo Mizuno 1
Editor: Sean Bennett3
PMCID: PMC12118913  PMID: 40434997

Abstract

Purpose

We proposed a novel morphological classification for intraductal papillary neoplasm of the bile duct (IPNB) and evaluated its association with postoperative prognosis.

Methods

Forty-two IPNB patients who underwent surgical resection were classified morphologically into three types—branched (n = 10), main duct (n = 26), and mixed (n = 6)—based on preoperative imaging features indicating cystic and/or bile duct involvement. Among them, 32 patients with evaluable specimens were further categorized pathologically into Type 1 (n = 10) and Type 2 (n = 22). Patient characteristics and postoperative outcomes were analyzed.

Results

Intraepithelial neoplasia was more frequently observed in the branched type, whereas invasive carcinoma predominated in the main duct type. In the mixed type, a half of patients involved both intra- and extrahepatic bile ducts, and this type also showed the highest incidence of residual tumor. The mixed type had the poorest 5-year postoperative survival rate (50%), compared to 90% in the main duct type and 100% in the branched type. It also exhibited the highest 5-year recurrence rate (62%). Among IPNB patients with associated invasive carcinoma, tumor infiltration beyond the bile duct wall (p < 0.001) and lymph node metastasis (p = 0.021) were significantly associated with poor prognosis, whereas the anatomical extent of the lesion (intrahepatic, extrahepatic, or both) was not. Morphological classification was significantly correlated with pathological subtypes: the branched type was predominant in Type 1 (60%), while the main duct type predominated in Type 2 (64%) (p = 0.039).

Conclusions

Our novel morphological classification of IPNB correlates with postoperative prognosis and may assist in preoperative planning of surgical strategies for IPNB patients.

Introduction

Intraductal papillary neoplasm of the bile duct (IPNB) was defined by the World Health Organization (WHO) in 2010. The concept of IPNB continues to evolve, and in the latest WHO classification (fifth edition, 2019), it is defined as a grossly visible premalignant neoplasm with intraductal papillary or villous growth of biliary-type epithelium [1]. The prevalence of IPNB is rare, accounting for approximately 4–15 percent of biliary tract tumors, and its pathophysiological characteristics remains incompletely understood [2]. IPNB exhibits unique features distinct from other biliary tract tumors, including papillary growth [3] and mucin production [4], which resemble to those of pancreatic intraductal papillary mucinous neoplasm (IPMN), compared rather than a tumor in biliary tract. And thus, historically, IPNB has been discussed in contrast to pancreatic IPMN due to these similarities [5,6]. In pancreatic IPMN, morphological differences such as branched duct, main duct, and mixed types reflect the degree of malignancy, and based on those morphologies, therapeutic strategies are determined [7]. This is a unique feature among digestive tract tumors. Currently, common criteria for guiding treatment strategies in IPNB have not been established. However, considering IPNB as the counterpart of pancreatic IPMN, on treatment strategy for IPNB, it may be appropriate to refer to morphological classification rather than the TNM classification for biliary tract cancer. Based on this concept, we classified the morphology of IPNB in 2013, reporting their respective characteristics [8]. Several subsequent studies attempting morphological classification like ours have been reported [9–12], but none have yielded including ours results that could guide treatment strategies until now. This may be due to insufficient understanding of tumor characteristics of IPNB, particularly unique features of IPNB that are distinct from pancreatic IPMN such as the complexity of biliary tract anatomy and high malignancy [12].

To further elucidate the clinicopathological characteristics of IPNB and establish a global consensus, a collaborative study on IPNB has been conducted since 2016 by the Japan Biliary Association (JBA) and the Korean Association of Hepato-Biliary-Pancreatic Surgery (KAHBPS) [13]. The newly proposed pathological diagnostic criteria (Type 1 and Type 2 subtypes), based on observations by specialized pathologists, have had the greatest impact on the diagnosis of IPNB in recent years and were adopted in the latest WHO classification of digestive system tumors in 2019 [1].

This study aims to update the morphological classification of IPNB previously reported by us, incorporating the new consensus represented by the Type 1 and Type 2 pathological classifications, and validate its clinical significance in establishing a surgical strategy for IPNB.

Methods

Patient selection

This study protocol was approved by the medical ethics committee of Mie University Hospital (No. H2018-064) and was performed in accordance with the latest revision of the Declaration of Helsinki. Informed consent was waived due to the retrospective nature of the study. Participants were provided with the opportunity to refuse participation through an opt-out process, which was fully explained. All data were fully anonymized before access, under the supervision of the ethics committee. The data were accessed for research purposes on August 3rd, 2024.

From December 1976 to July 2024 at our institution, IPNB patients who underwent surgical resection were analyzed the perioperative characteristics of IPNB, such as age, gender, symptoms, tumor findings, surgical procedure, histology, patient prognosis, and type of recurrence, according to our new classification.

Definition of IPNB and reevaluation of pathological subtypes 1 and 2

In this study, cases pathologically confirmed as IPNB according to the WHO classification were included. For cases diagnosed before the publication of the WHO 4th edition (2010) [14], pathological specimens had been retrospectively re-evaluated based on the WHO 4th edition criteria at the time of our previous study (published in 2013) [8] and confirmed as IPNB. Cases diagnosed after the previous study were pathologically confirmed at the time of diagnosis according to the latest WHO criteria (4th or 5th editions). Notably, the diagnostic criteria for IPNB did not substantially change between the 4th and 5th editions.

IPNB was defined as a pathologically confirmed papillary tumor, irrespective of benignity or malignancy, mucin production, or intrahepatic or extrahepatic location. The degree of dysplasia was classified as low-grade (including adenoma), high-grade (equivalent to carcinoma in situ, CIS), or invasive carcinoma [13]. Cases presenting cystic tumors with ovarian-like stroma (suspected hepatic mucinous cystic neoplasm) or flat epithelial lesions representing biliary intraepithelial neoplasia (BilIN) were excluded from the study cohort by careful pathological discrimination [15]. Superficial intraductal tumor spread was defined as mucosal extension greater than 20 mm from the edge of the main tumor [16].

The pathological subtypes, Type 1 and Type 2, were determined by additional pathological reevaluation based on the WHO 5th edition criteria [1]. This reevaluation was performed by a single board-certified pathologist with over 25 years of experience. Among the 42 IPNB cases, 10 cases were excluded from subtype analysis due to specimen deterioration (S1 Fig). As shown in S2 Fig, Type 1 IPNBs exhibited a well-organized papillary-villous structure with fine fibrovascular cores in a monotonous pattern. Neoplastic cells showed an overall orderly arrangement, with areas of low- to intermediate-grade dysplasia in addition to high-grade dysplasia. In contrast, Type 2 IPNBs demonstrated a more complex histological architecture, including irregular papillary branching and/or solid-tubular components, with neoplastic cells showing nuclear hyperchromasia, stratification, and loss of polarity.

Proposal for a morphologic classification of IPNB: Branched, main duct, and mixed type

IPNB patients were classified into three types—branched, main duct, and mixed—according to our newly proposed morphological criteria, which are based on a combination of cystic and bile duct imaging features (Fig 1A). Fig 1B illustrates each type.

Fig 1. Criteria for the morphologic classification of IPNB.

Fig 1

The IPNBs were morphologically classified into three types: branched, main duct, and mixed types, based on the specific criteria. (A) This criteria combine two independent factors: cystic and bile duct characteristics, which are assessed through preoperative imaging studies. (B) The representative schemas for each morphologic type. Abbreviations: IPNB, intraductal papillary neoplasm of the bile duct.

Given the close embryological relationship between the biliary tract and the pancreas [17], IPNB can be morphologically classified in a manner analogous to pancreatic IPMN, into branched, main duct, and mixed types [18]. Based on the international criteria for pancreatic IPMN [19], we first defined IPNBs with cystic lesions as the branched type, those with non-obstructive ductal dilatation as the main duct type, and those exhibiting both features as the mixed type. Based on these representative cases, cystic lesions were considered the “cystic factor,” a defining feature of the branched type, while bile duct dilatation without tumor obstruction was considered the “bile duct factor,” a defining feature of the main duct type. Bile duct wall thickening—sometimes accompanied by invasion into surrounding organs and mimicking cholangiocarcinoma [11]—was considered the feature to originate from large bile ducts, and thus, categorized as part of the bile duct factor. Classification criteria for the three morphological subtypes were then established based on the combination of these two factors. Representative clinical cases for each subtype are presented in S3, S4, and S5 Figs.

Statistical analysis

Continuous variables were expressed as median and interquartile ranges and were compared using the Mann-Whitney U test for 2-group. Categorical variables were summarized as numbers and percentages and were compared using Pearson’s Chi-square/ Fisher test. In the survival analysis of this study, disease-specific survival (DSS) was defined by excluding deaths such as in-hospital mortality or deaths due to other causes to evaluate the oncological prognosis of IPNB. The cumulative recurrence rate was analyzed based on the event of recurrence and the time from surgery. Survival and recurrence curves were generated using the Kaplan–Meier method, and differences between the groups were compared using the log-rank test. In statistical comparisons of perioperative variables among multiple groups, a consistent reference group was used: the branched type among morphological subtypes, intrahepatic lesions among tumor lesion extent, and invasion limited to the mucosa or fibromuscular layer among pathological tumor depth. All tests were two-sided, and p value < 0.05 was considered statistically significant. All analyses were performed using IBM SPSS Statistics version 29 (IBM Corporation, Armonk, NY).

Results

Clinical and pathological characteristics among three morphologic subtypes of IPNB: Branched, main duct, and mixed

Among all 42 patients with IPNB, 10 (23%) were classified as the branched type, 26 (62%) as the main duct type, and 6 (15%) as the mixed type (Table 1). Half of the patients with the mixed type experienced symptoms such as cholangitis, jaundice, or abdominal pain. Tumor lesion extent significantly differed among the three morphologic types (p < 0.001 for branched vs. main duct; p = 0.012 for branched vs. mixed). All lesions in the branched type were confined to the liver. In contrast, 69% of main duct type cases had extrahepatic tumors, and only 4% showed intrahepatic involvement. Among the mixed type, 17% had tumors in the extrahepatic bile duct, 33% in the intrahepatic duct, and 50% had lesions extending to both regions. Mural nodules were observed in 83% of all IPNB cases (n = 35), with detection rates of 90%, 77%, and 100% in the branched, main duct, and mixed types, respectively. All patients with the branched type underwent hepatectomy, with one case requiring additional extrahepatic bile duct resection. Similarly, all patients with the mixed type underwent hepatectomy, and half of them also required extrahepatic bile duct resection. In the main duct type group, 35% underwent hepatectomy, 62% underwent pancreaticoduodenectomy, and 4% underwent extrahepatic bile duct resection alone. Regarding pathological findings, low-grade intraepithelial neoplasia was more frequently observed in the branched type, whereas invasive carcinoma was more prevalent in the main duct type. Among IPNBs with associated invasive carcinoma, tumor invasion beyond the bile duct wall was observed in 0% of branched, 18% of main duct, and 25% of mixed types. In this population, the rate of residual tumor was significantly higher in the mixed type than in the branched type (75% vs. 0%, p = 0.048). Lymph node metastasis was identified in four patients (18%), all of whom had main duct type IPNB.

Table 1. Patient demographics according to morphologic classification.

Variables Branched (n = 10) Main duct (n = 26) Mixed (n = 6)
Age (y.o.) 72 [66–75] 73 [66–76] 72 [60–77]
Gender (Male/ Female) 4 (40) / 6 (60) 17 (65) / 9 (35) 4 (67) / 2 (33)
Preoperative biliary drainage (%) 0 (0) 2 (8) 1 (17)
Symptoms (%)
Cholangitis 1 (10) 4 (15) 3 (50)
Jaundice 0 (0) 4 (15) 3 (50)
Fever 1 (10) 1 (4) 1 (17)
Abdominal pain 0 (0) 1 (4) 3 (50)
Elevation of hepatobiliary enzyme 1 (10) 6 (23) 2 (33)
Tumor findings by preoperative image study (%)
Lesion extent § : Intrahepatic/ Extrahepatic/ Both 10 (100) / 0 (0) / 0 (0) 1 (4) / 18 (69) / 7 (27) 2 (33) / 1 (17) / 3 (50)
Cyst 10 (100) 0 (0) 6 (100)
Bile duct dilation without obstruction 0 (0) 3 (12) 5 (83)
Bile duct wall thickness 0 (0) 26 (100) 3 (50)
Mural nodule 9 (90) 20 (77) 6 (100)
Lymph node swelling by image study 0 (0) 3 (12) 0 (0)
Operative procedure (%)
Hepatectomy 9 (90) 1 (4) 3 (50)
Hepatectomy with extra bile duct resection 1 (10) 8 (31) 3 (50)
Pancreaticoduodenectomy 0 (0) 16 (62) 0 (0)
Extra bile duct resection alone 0 (0) 1 (4) 0 (0)
Pathological findings (%)
Low grade intraepithelial neoplasia 5 (50) 1 (4) 1 (17)
High grade intraepithelial neoplasia (equivalent to CIS) 0 (0) 3 (12) 1 (17)
Invasive carcinoma 5 (50) 22 (85) 4 (67)
Invasion depth: M/ FM/ SS/ SE or SI 4 (80) / 1 (20) / 0 (0) / 0 (0) 5 (23) / 6 (27) / 5 (23) / 6 (27) 2 (50) / 1 (25) / 0 (0) / 1 (25)
Superficial extension 1 (20) 9 (41) 2 (50)
Lymph node metastasis 0 (0) 4 (18) 0 (0)
Residual tumor of R1 or 2 † 0 (0) 4 (18) 3 (75)
Pathological subtypes * (%) n = 10 n = 16 n = 6
Type 1/ Type 2 6 (60) / 4 (40) 2 (12) / 14 (88) 2 (33) / 4 (67)

Abbreviations: CIS, carcinoma in situ; IPNB, intraductal papillary neoplasm of the bile duct

§

Tumor lesion extent significantly differed among the three morphologic types: p < 0.001 for branched vs. main duct; p = 0.012 for branched vs. mixed.

†

The incidence of residual tumor was highest in the mixed type and was significantly higher than that in the branched type (p = 0.048).

*Thirty-two patients with evaluable specimens were diagnosed with pathological subtypes.

Association between the morphologic classification and the pathologic subtypes of Type 1 and 2

32 patients without evaluable pathological specimens for the pathological classification were divided into Type 1 (n = 10) and Type 2 (n = 22) (S1 Fig). As shown in S1 Table, general background characteristics such as age, gender, and symptoms were comparable between Type 1 and Type 2. In Type 1, 70% of lesions were located intrahepatically, while only 27% of Type 2 lesions were intrahepatic (40% were in the extrahepatic duct) (p = 0.072). Over 80% of Type 2 lesions exhibited invasive carcinoma, compared to 30% in Type 1 (p = 0.007). Analyzing the association between morphological and pathological subtypes, 60% of pathological Type 1 IPNB were categorized as the branched type, 20% as the main duct type, and 20% as the mixed type. In pathological Type 2 IPNB, the predominant morphological type was the main duct type (64%), with the branched type and mixed type each accounting for 18% (p = 0.039).

Postoperative survival by morphology and lesion extent in all IPNB cases

In postoperative DSS in patients with the branched type IPNB, there were no postoperative deaths. The 1-, 3-, and 5-year DSS rates for patients with the main duct type were 96%, 90%, and 90%, respectively. No significant difference was observed in DSS between the branched and main duct types. However, the mixed type exhibited significantly lower 1-, 3-, and 5-year DSS rates of 100%, 50%, and 50%, respectively, compared to the branched type (p = 0.044, Fig 2A). As shown in Fig 2B, DSS did not show significant differences among the three groups based on tumor lesion extent (p = 0.167 between intrahepatic and extrahepatic bile duct lesions, p = 0.222 between intrahepatic and both lesions).

Fig 2. Postoperative survival by morphology and lesion extent in all IPNB cases.

Fig 2

DSS in patients with IPNB was compared according to (A) morphological subtype—branched, main duct, and mixed—and (B) anatomical extent of the tumor—confined to the intrahepatic bile duct, extrahepatic bile duct, or both. No disease-specific deaths occurred in the branched type. There was no significant difference in DSS between the branched and main duct types. In contrast, the mixed type showed significantly worse 1-, 3-, and 5-year DSS compared to the branched type (p = 0.044). DSS did not significantly differ among the groups based on tumor extent. Abbreviations: DSS, disease-specific survival; IPNB, intraductal papillary neoplasm of the bile duct.

Postoperative survival by pathological tumor progression factors in IPNB with associated invasive carcinoma

In thirty-one patients with IPNB with associated invasive carcinoma, DSS was compared based on pathological tumor progression factors. All patients with tumors confined to the mucosal (M) or fibromuscular (FM) layers survived without disease-specific death for 5 years after surgery. In contrast, patients with tumor invasion beyond the bile duct wall (serosal exposure [SE] or serosal invasion [SI]) had 1-, 3-, and 5-year DSS rates of 83%, 0%, and 0%, respectively, which were significantly lower (p < 0.001; Fig 3A). Patients with tumor extension to the subserosal (SS) or serosal (S) layers also had lower DSS compared to those with M or FM invasion (p = 0.037), although the difference became more evident after 5 years postoperatively. In patients with lymph node metastasis, the 1-, 3-, and 5-year DSS were significantly lower compared to those without lymph node metastasis. The DSS rates were 96%, 91%, and 91% versus 100%, 67%, and 67%, respectively (p = 0.021, Fig 3B). In patients with residual tumor (R1 or R2), the 1-, 3-, and 5-year DSS were 86%, 64%, and 64%, respectively. Although these rates were lower than those in patients who underwent curative resection, the difference was not statistically significant (p = 0.119, Fig 3C).

Fig 3. Postoperative survival by pathological tumor progression factors in IPNB with associated invasive carcinoma.

Fig 3

In patients with invasive IPNB, DSS was analyzed according to pathological indicators of tumor progression: (A) invasion depth, (B) lymph node metastasis, and (C) residual tumor status. Patients with tumor invasion beyond the bile duct wall (SE or SI) had a 5-year DSS rate of 0%, significantly lower than those with M or FM invasion (p < 0.001). The presence of lymph node metastasis was also associated with significantly worse 5-year DSS (p = 0.021). Patients with residual tumor (R1 or R2) had lower 5-year DSS than those with curative (R0) resection, although this difference did not reach statistical significance (p = 0.119). Abbreviations: DSS, disease-specific survival; IPNB, intraductal papillary neoplasm of the bile duct Tumor depth: M (mucosal)/ FM (fibromuscular)/ SS (subserosa)/ SE (serosal exposure)/ SI (serosal invasion).

Postoperative recurrence by morphology in IPNB with associated invasive carcinoma

The association between postoperative recurrence and morphological subtypes was evaluated in patients with invasive IPNB. No recurrence was observed in the branched type. In contrast, the mixed type showed a high recurrence incidence, with 1-, 3-, and 5-year cumulative recurrence rates of 25%, 25%, and 62%, respectively (p = 0.074 vs. branched type, Fig 4). In the main duct type, the recurrence risk was intermediate, with 1-, 3-, and 5-year cumulative recurrence rates of 6%, 6%, and 13%, respectively, and no significant difference compared to the branched type (p = 0.246).

Fig 4. Postoperative recurrence by morphology in IPNB with associated invasive carcinoma.

Fig 4

The association between postoperative recurrence and morphological subtypes was evaluated in patients with invasive IPNB. No recurrence was observed in the branched type. In contrast, the mixed type showed a high 5-year recurrence rate of 62%. The main duct type had an intermediate risk, with a 5-year cumulative recurrence rate of 13%. Abbreviations: IPNB, intraductal papillary neoplasm of the bile duct.

Discussion

The clinical significance of our proposed morphological classification for IPNB lies in three key aspects: (i) preoperative diagnostic capability, (ii) prognostic relevance based on morphological differences, and (iii) simplicity and practicality of the criteria. Given the need for straightforward application in clinical settings, our classification—based solely on cystic and bile duct factors—is highly practical (Fig 1). Notably, it is the first to demonstrate a relationship with pathological classification.

Previous morphological classifications of IPNB considered the lesion location (intrahepatic vs. extrahepatic) as a key factor [8,10,12]. In contrast, our new morphological criteria do not take lesion location into account. This is based on the understanding that IPNB can arise not only from biliary epithelial cells but also from peribiliary glands (PBGs) [20]—accessory glands distributed along both intrahepatic and extrahepatic bile ducts, which contribute to secretion and epithelial repair [18,21]. Lesions derived from biliary epithelium, when arising in small bile ducts (after the segmental branches), typically may present as the branched type and be in the intrahepatic bile ducts. In contrast, PBG-derived lesions may occur irrespective of intrahepatic or extrahepatic bile duct, as PBGs are present throughout the biliary tract. This location-independent approach allowed our classification to include atypical cases that present solely with mural nodules or wall thickening in the bile duct, without cystic changes or non-obstructive ductal dilatation. Previously, such lesions were classified differently based on their anatomical location rather than their morphological features. We believe that these lesions are fundamentally similar in morphology. Therefore, by classifying them into the main duct type based solely on the presence of the bile duct factor, regardless of lesion location, our new criteria resolve this inconsistency (S4 FigB).

Since IPNB is a precancerous lesion that can progress to invasive cancer [22], early detection and surgical resection are essential. However, a definitive surgical strategy has yet to be established. Drawing inspiration from the association between morphology and prognosis in pancreatic IPMN [19], we investigated whether our morphological classification could similarly predict the prognosis of IPNB. Among previous studies that attempted to classify IPNB morphology [9–12,23,24], ours is the first to successfully demonstrate a correlation between morphological subtype and postoperative prognosis. While Luvira et al. [9] stratified prognosis, their study excluded IPNBs in the extrahepatic bile duct—a major limitation. Among our classification—branched, main duct, and mixed—the mixed type had the poorest survival outcomes (Fig 2A). One possible explanation is the higher risk of residual tumor in the mixed type. Due to the extensive spread of lesions—half of which involved both intrahepatic and extrahepatic bile ducts—achieving R0 resection is often difficult (residual tumor rate significantly higher than in the branched type, p = 0.048; Table 1). However, lesion extent alone does not appear to fully account for the poor prognosis associated with the mixed type. As shown in Fig 2B, there were no significant differences in DSS among patients with intrahepatic, extrahepatic, or both intra- and extrahepatic tumor involvement. This suggests that our classification reflects not only the anatomical extent of the tumor but also underlying biological characteristics—for example, its association with pathological subtypes. We next examined the relationship between prognosis and cancer staging. In invasive IPNB, tumor stage is determined according to different classification systems based on tumor location—namely, intrahepatic, perihilar, or distal bile duct cancer—making direct comparison across cases impractical. Instead, we focused on two common oncologic factors: depth of invasion and lymph node metastasis, which can serve as surrogates for pathological staging. As shown in Fig 3, both were strongly associated with poor prognosis and, in terms of p-values, were even more predictive than morphological subtype. However, as these factors are only assessable postoperatively, our morphological classification offers a major advantage by enabling preoperative prognostic assessment and supporting treatment strategy.

We propose several practical implications of our morphological classification for surgeons. While the choice of surgical procedure (e.g., hepatic resection or pancreaticoduodenectomy) primarily depends on the anatomical location and extent of the tumor, our classification can aid in determining the appropriate resection extent. It serves as a rationale for surgical aggressiveness when considering highly invasive procedures such as hepatopancreatoduodenectomy. For example, mixed-type IPNB, associated with poor prognosis, may require wider surgical margins. In contrast, branched-type IPNB, which typically exhibits limited invasion and lower malignancy, may allow for more limited resection and is often amenable to minimally invasive approaches such as robotic or laparoscopic surgery. Postoperatively, the classification may also inform the need for adjuvant therapy and surveillance. The mixed type demonstrated a significantly higher recurrence rate, with over half of the patients experiencing recurrence within five years (Fig 4). In contrast, no recurrence was observed in the branched type, even when invasive components were present. These findings suggest that mixed-type IPNB may benefit from adjuvant therapy and intensive follow-up, while such measures might be unnecessary in the branched type. Crucially, this classification provides prognostic information preoperatively, supporting personalized treatment planning from the outset. Surveillance strategies like pancreatic IPMN are not recommended, even for the branched type. We encountered a case initially classified as branched type that progressed over 14 years to mixed type with diffuse bile duct involvement (S7 and S8 Figs). Given the difficulty of curative resection in advanced mixed-type IPNB, timely surgery is advisable.

To objectively evaluate the still poorly understood nature of IPNB, the pathological subtypes, Type 1 and Type 2, were proposed [13]. Some differences between these subtypes have been reported, with Type 2 showing higher malignancy (over 80% of Type 2 exhibiting invasive carcinoma compared to 30% in Type 1, p = 0.007, S1 Table). Many previous studies have reported worse postoperative survival in Type 2 IPNB compared to Type 1 [25–28]. Although our results did not show statistical significance, the disease-specific survival in Type 2 was lower than in Type 1, with a 5-year survival rate of 100% for Type 1 versus 76% for Type 2 (S6 Fig). While this pathological classification should be more critical in future clinical settings as a basis, it has limitations for preoperative management since the types can only be determined postoperatively. Our novel morphological classification is, to the best of our knowledge, the first tool to demonstrate a correlation between morphological and pathological features. In our cohort, Type 1 exhibited more branched type morphology than Type 2 (60% vs. 18%), while Type 2 exhibited more main duct type morphology than Type 1 (64% vs. 20%) (p = 0.039, S1 Table). Our morphological classification may complement the pathological classification by predicting its subtype preoperatively.

Limitations of this study include its retrospective, single-center design; however, the most critical limitation is the small cohort size. While we demonstrated an association between our morphological classification and patient prognosis, the small number of cases—particularly the limited number of mixed-type IPNBs with poor prognosis (n = 6)—precludes definitive conclusions about its generalizability. For instance, to establish the classification as an independent prognostic factor, it would be necessary to compare it with known pathological risk factors such as depth of invasion and lymph node metastasis using multivariate analysis, which is not feasible given the current sample size. Nonetheless, we believe that the concept and criteria of our novel morphological classification are of significant value and hold considerable potential in the clinical setting. Future multicenter studies with larger cohorts are needed to objectively validate the significance and reliability of this classification system.

In conclusion, we classified IPNB into three morphological types—branched, main duct, and mixed—drawing inspiration from the classification of pancreatic IPMN. This classification demonstrated a clear correlation with postoperative prognosis and may help guide surgical strategies tailored to each morphological type in patients with IPNB.

Supporting information

S1 Table. Patient demographics according to pathological subtype.

Abbreviations: CIS, carcinoma in situ; IPNB, intraductal papillary neoplasm of the bile duct.

(DOCX)

pone.0325081.s001.docx (29.3KB, docx)
S1 Fig. Study flow.

Abbreviation: BilIN, Biliary intraepithelial neoplasia; lPNB, intraductal papillary neoplasm of the bile duct.

(TIFF)

pone.0325081.s002.tiff (8.9MB, tiff)
S2 Fig. Histopathological features of the pathological subtypes of IPNB: Type 1 or 2.

(A) Pathological Type 1 of IPNB. (A-a) A monotonous pattern of well-organized papillary-villous growth with a fine fibrovascular core appears within the cyst. Neoplastic cells show an overall well-organized arrangement. (A-b) A component of low to intermediate dysplasia is present. (B) Pathological Type 2 of IPNB. (B-a) In the dilated bile duct, various papillary architectures with thick fibrovascular stalks exhibit complex, irregular, and heterogeneous growth. (B-b) Neoplastic cells display nuclear hyperchromasia, stratification, and disordered polarity. Most cells show high-grade dysplasia. Abbreviation: lPNB, intraductal papillary neoplasm of the bile duct.

(TIFF) (TIFF)

pone.0325081.s003.tiff (8.8MB, tiff)
S3 Fig. Typical case of the branched-type IPNB.

(A) CT imaging revealed a cystic lesion between liver segments 3 and 4 (arrowheads), with an enhanced mural nodule present within the cyst (arrow). (B) Endoscopic demonstrated mural nodules that were enhanced with a contrast agent (arrow). (C) ERC showed no bile duct dilation or extracystic lesions. (D) Histological examination identified a papillary growth tumor within the cystic lesion, leading to a diagnosis of IPNB associated with invasive carcinoma. Abbreviations: EUS, endoscopic retrograde cholangiography; IPNB, intraductal papillary neoplasm of the bile duct; US, ultrasound.

(TIFF)

S4 Fig. Typical case of the main duct-type IPNB.

(A) A main duct-type IPNB with a mural nodule in the extrahepatic bile duct. (A-a) A mural nodule (arrowhead) was detected in the intrapancreatic bile duct on CT. (A-b) ERC demonstrated diffuse dilation of the entire bile duct proximal to the tumor. (A-c) The resected specimen obtained by pancreaticoduodenectomy showed a solid white tumor (*). (A-d) Histologically, the tumor exhibited a papillary architecture with heterogeneous growth patterns and was diagnosed as high-grade intraepithelial neoplasia (equivalent to CIS). (B) A main duct-type IPNB with localized wall thickening in the intrahepatic bile duct. (B-a) CT revealed wall thickening (arrowhead) and localized bile duct dilation (arrow) in the posterior branch. (B-b) PET-CT demonstrated FDG uptake in the lesion along the dilated posterior branch (arrow). (B-c) ERC showed wall thickening (arrowheads) in the corresponding area. (B-d) In the resected specimen, thickening of the posterior bile duct wall and a papillary tumor with mucin production were observed. (B-e) Histologically, the lesion consisted of papillary tumor cells, including invasive adenocarcinoma with heterogeneous growth patterns, leading to the diagnosis of IPNB with associated invasive carcinoma. Abbreviations: CIS, carcinoma in situ; CT, computed tomography; ERC, endoscopic retrograde cholangiography; FDG, fluorodeoxyglucose; PET, positron emission tomography; IPNB, intraductal papillary neoplasm of the bile duct.

(TIFF)

pone.0325081.s005.tiff (9.2MB, tiff)
S5 Fig. Typical case of the mixed-type IPNB.

The mixed type IPNB is characterized by both cystic and bile duct features. (A) CT showed a multilobular cystic lesion (arrowheads) extensively occupying in the left lobe. (B) In MRCP, entire bile duct dilation without obstruction was identified besides the intrahepatic cystic lesion (arrowheads). (C) ERC showed defects in biliary truct and a bulging papilla of Vater, resulting from hypersecretion of mucin. (D) Resected specimen of the left lobe exhibited a multilobular cystic lesion with diagnosis of IPNB with associated invasive carcinoma. Abbreviations: CT, computed tomography; ERC, endoscopic retrograde cholangiography; MRCP, magnetic resonance cholangiopancreatography; IPNB, intraductal papillary neoplasm of the bile duct.

(TIFF)

S6 Fig. Postoperative survival by the pathological subtypes in all IPNB cases.

Postoperative DSS in patients with IPNB was compared according to pathological subtypes. Although the 1-, 3-, and 5-year survival rates in Type 2 (95%, 76%, and 76%, respectively) were lower than those in Type 1, the difference was not statistically significant (p = 0.151). Abbreviations: DSS, disease-specific survival; IPNB, intraductal papillary neoplasm of the bile duct.

(TIFF)

pone.0325081.s007.tiff (8.6MB, tiff)
S7 Fig. A 14-year follow-up case of mixed type: At the time of diagnosis.

A 57-year-old female. (A) An intrahepatic cyst (arrowhead) was incidentally detected on CT. The lesion was in segments 5–8 and exhibited a mural nodule (yellow arrow). (B) Abdominal ultrasonography revealed an enhanced mural nodule (yellow arrow) within the cystic lesion (arrowhead), and a biopsy was performed on the nodule. (C) The biopsy specimen showed no evidence of malignancy. Since there were no abnormal features in the bile duct, such as dilation or wall thickening, she was diagnosed with branched-type IPNB. Although surgery was planned, the patient chose surveillance due to the absence of malignant findings. Abbreviations: IPNB, intraductal papillary neoplasm of the bile duct.

(TIFF)

pone.0325081.s008.tiff (8.6MB, tiff)
S8 Fig. A 14-year follow-up case of mixed type: At the time of surgery.

(A) (B) Fourteen years later, the cystic lesion (arrowhead) and the mural nodule (yellow arrow) had enlarged on CT. Additionally, dilatation of both the intrahepatic bile duct (blue arrowhead) and the extrahepatic bile duct (*) was observed. (C) Cholangiography revealed a cystic lesion (arrowhead) connected to the bile duct and dilated bile ducts without obstruction (*). (D) Cholangioscopy demonstrated mucin secretion and an intraluminally growing papillary tumor in the right main hepatic duct. Morphologically, the lesion was diagnosed as the mixed-type IPNB due to the presence of both the cystic lesion and bile duct dilatation without obstruction. Right hepatectomy and caudate lobectomy with extrahepatic bile duct resection were performed. (E) In the specimen, a mucin-producing papillary tumor (yellow arrow) was identified within the cystic lesion (arrowhead). While most of the cyst wall epithelium was adenoma, the tumor was an adenocarcinoma infiltrating the fibromuscular layer. Abbreviations: IPNB, intraductal papillary neoplasm of the bile duct.

(TIFF)

pone.0325081.s009.tiff (8.8MB, tiff)
S1 Data. Dataset of resected IPNB cases.

(XLSX)

pone.0325081.s010.xlsx (16KB, xlsx)
S2 Data. Dataset used for pathological subtype analysis.

(XLSX)

pone.0325081.s011.xlsx (15.4KB, xlsx)

Acknowledgments

Not applicable.

Data Availability

All relevant data are within the manuscript and its Supporting Information files.

Funding Statement

The author(s) received no specific funding for this work.

References

  • 1.Klimstra DS, Lam AK, Paradis V, Schirmacher P. Tumors of the gallbladder and extrahepatic bile ducts. In: WHO classification of Tumors editorial board. WHO classification of Tumors of digestive system. 5th edition. Lyon, France: IARC Press; 2019. [Google Scholar]
  • 2.Fujikura K, Fukumoto T, Ajiki T, Otani K, Kanzawa M, Akita M, et al. Comparative clinicopathological study of biliary intraductal papillary neoplasms and papillary cholangiocarcinomas. Histopathology. 2016;69(6):950–61. doi: 10.1111/his.13037 [DOI] [PubMed] [Google Scholar]
  • 3.Chen TC, Nakanuma Y, Zen Y, Chen MF, Jan YY, Yeh TS, et al. Intraductal papillary neoplasia of the liver associated with hepatolithiasis. Hepatology. 2001;34(4 Pt 1):651–8. doi: 10.1053/jhep.2001.28199 [DOI] [PubMed] [Google Scholar]
  • 4.Han JK, Lee JM. Intrahepatic intraductal cholangiocarcinoma. Abdom Imaging. 2004;29(5):558–64. doi: 10.1007/s00261-004-0189-0 [DOI] [PubMed] [Google Scholar]
  • 5.Nakanuma Y, Kakuda Y, Uesaka K. Characterization of intraductal papillary neoplasm of the bile duct with respect to the histopathologic similarities to pancreatic intraductal papillary mucinous neoplasm. Gut Liver. 2019;13(6):617–27. doi: 10.5009/gnl18476 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 6.Rocha FG, Lee H, Katabi N, DeMatteo RP, Fong Y, D’Angelica MI, et al. Intraductal papillary neoplasm of the bile duct: a biliary equivalent to intraductal papillary mucinous neoplasm of the pancreas?. Hepatology. 2012;56(4):1352–60. doi: 10.1002/hep.25786 [DOI] [PubMed] [Google Scholar]
  • 7.Jabłońska B, Szmigiel P, Mrowiec S. Pancreatic intraductal papillary mucinous neoplasms: current diagnosis and management. World J Gastrointest Oncol. 2021;13(12):1880–95. doi: 10.4251/wjgo.v13.i12.1880 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 8.Kato H, Tabata M, Azumi Y, Osawa I, Kishiwada M, Hamada T, et al. Proposal for a morphological classification of intraductal papillary neoplasm of the bile duct (IPN-B). J Hepatobiliary Pancreat Sci. 2013;20(2):165–72. doi: 10.1007/s00534-012-0513-y [DOI] [PubMed] [Google Scholar]
  • 9.Luvira V, Somsap K, Pugkhem A, Eurboonyanun C, Luvira V, Bhudhisawasdi V, et al. Morphological classification of intraductal papillary neoplasm of the bile duct with survival correlation. Asian Pac J Cancer Prev. 2017;18(1):207–13. doi: 10.22034/APJCP.2017.18.1.207 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 10.Ying S, Ying M, Liang W, Wang Z, Wang Q, Chen F, et al. Morphological classification of intraductal papillary neoplasm of the bile duct. Eur Radiol. 2018;28(4):1568–78. doi: 10.1007/s00330-017-5123-2 [DOI] [PubMed] [Google Scholar]
  • 11.Park HJ, Kim SY, Kim HJ, Lee SS, Hong GS, Byun JH, et al. Intraductal papillary neoplasm of the bile duct: clinical, imaging, and pathologic features. AJR Am J Roentgenol. 2018;211(1):67–75. doi: 10.2214/AJR.17.19261 [DOI] [PubMed] [Google Scholar]
  • 12.Kim JR, Lee K-B, Kwon W, Kim E, Kim S-W, Jang J-Y. Comparison of the clinicopathologic characteristics of intraductal papillary neoplasm of the bile duct according to morphological and anatomical classifications. J Korean Med Sci. 2018;33(42):e266. doi: 10.3346/jkms.2018.33.e266 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 13.Nakanuma Y, Jang K-T, Fukushima N, Furukawa T, Hong S-M, Kim H, et al. A statement by the Japan-Korea expert pathologists for future clinicopathological and molecular analyses toward consensus building of intraductal papillary neoplasm of the bile duct through several opinions at the present stage. J Hepatobiliary Pancreat Sci. 2018;25(3):181–7. doi: 10.1002/jhbp.532 [DOI] [PubMed] [Google Scholar]
  • 14.Bosman FT, Carneiro F, Hruban RH, Theise ND. Tumors of the gallbladder and extrahepatic bile ducts. In: WHO classification of tumors editorial board. WHO classification of tumors of digestive system. 4th edition. Lyon, France: IARC Press; 2010. [Google Scholar]
  • 15.Sato Y, Sasaki M, Harada K, Aishima S, Fukusato T, Ojima H, et al. Pathological diagnosis of flat epithelial lesions of the biliary tract with emphasis on biliary intraepithelial neoplasia. J Gastroenterol. 2014;49(1):64–72. doi: 10.1007/s00535-013-0810-5 [DOI] [PubMed] [Google Scholar]
  • 16.Sakamoto E, Nimura Y, Hayakawa N, Kamiya J, Kondo S, Nagino M, et al. The pattern of infiltration at the proximal border of hilar bile duct carcinoma: a histologic analysis of 62 resected cases. Ann Surg. 1998;227(3):405–11. doi: 10.1097/00000658-199803000-00013 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 17.Nakanuma Y, Hoso M, Sanzen T, Sasaki M. Microstructure and development of the normal and pathologic biliary tract in humans, including blood supply. Microsc Res Tech. 1997;38(6):552–70. doi: 10.1002/(sici)1097-0029(19970915)38:6<552::aid-jemt2>3.0.co;2-h [DOI] [PubMed] [Google Scholar]
  • 18.Nakanuma Y. A novel approach to biliary tract pathology based on similarities to pancreatic counterparts: is the biliary tract an incomplete pancreas?. Pathol Int. 2010;60(6):419–29. doi: 10.1111/j.1440-1827.2010.02543.x [DOI] [PubMed] [Google Scholar]
  • 19.Tanaka M, Fernández-Del Castillo C, Kamisawa T, Jang JY, Levy P, Ohtsuka T, et al. Revisions of international consensus Fukuoka guidelines for the management of IPMN of the pancreas. Pancreatology. 2017;17(5):738–53. doi: 10.1016/j.pan.2017.07.007 [DOI] [PubMed] [Google Scholar]
  • 20.Nakagawa H, Hayata Y, Yamada T, Kawamura S, Suzuki N, Koike K. Peribiliary glands as the cellular origin of biliary tract cancer. Int J Mol Sci. 2018;19(6):1745. doi: 10.3390/ijms19061745 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 21.Nakanuma Y, Harada K, Sasaki M, Sato Y. Proposal of a new disease concept “biliary diseases with pancreatic counterparts”. Anatomical and pathological bases. Histol Histopathol. 2014;29(1):1–10. doi: 10.14670/HH-29.1 [DOI] [PubMed] [Google Scholar]
  • 22.Ainechi S, Lee H. Updates on precancerous lesions of the biliary tract: biliary precancerous lesion. Arch Pathol Lab Med. 2016;140(11):1285–9. doi: 10.5858/arpa.2015-0396-RS [DOI] [PubMed] [Google Scholar]
  • 23.Yeh T-S, Tseng J-H, Chiu C-T, Liu N-J, Chen T-C, Jan Y-Y, et al. Cholangiographic spectrum of intraductal papillary mucinous neoplasm of the bile ducts. Ann Surg. 2006;244(2):248–53. doi: 10.1097/01.sla.0000217636.40050.54 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 24.Kim H, Lim JH, Jang KT, Kim MJ, Lee J, Lee JY, et al. Morphology of intraductal papillary neoplasm of the bile ducts: radiologic-pathologic correlation. Abdom Imaging. 2011;36(4):438–46. doi: 10.1007/s00261-010-9636-2 [DOI] [PubMed] [Google Scholar]
  • 25.Kubota K, Jang J-Y, Nakanuma Y, Jang K-T, Haruyama Y, Fukushima N, et al. Clinicopathological characteristics of intraductal papillary neoplasm of the bile duct: a Japan-Korea collaborative study. J Hepatobiliary Pancreat Sci. 2020;27(9):581–97. doi: 10.1002/jhbp.785 [DOI] [PubMed] [Google Scholar]
  • 26.Aoki Y, Mizuma M, Hata T, Aoki T, Omori Y, Ono Y, et al. Intraductal papillary neoplasms of the bile duct consist of two distinct types specifically associated with clinicopathological features and molecular phenotypes. J Pathol. 2020;251(1):38–48. doi: 10.1002/path.5398 [DOI] [PubMed] [Google Scholar]
  • 27.Uemura S, Higuchi R, Yazawa T, Izumo W, Matsunaga Y, Shiihara M, et al. Prognostic factors for surgically resected intraductal papillary neoplasm of the bile duct: a retrospective cohort study. Ann Surg Oncol. 2021;28(2):826–34. doi: 10.1245/s10434-020-08835-6 [DOI] [PubMed] [Google Scholar]
  • 28.Nakanuma Y, Uesaka K, Okamura Y, Terada T, Fukumura Y, Kakuda Y, et al. Reappraisal of pathological features of intraductal papillary neoplasm of bile duct with respect to the type 1 and 2 subclassifications. Hum Pathol. 2021;111:21–35. doi: 10.1016/j.humpath.2021.01.002 [DOI] [PubMed] [Google Scholar]

Decision Letter 0

Sean Bennett

17 Mar 2025

PONE-D-25-06283A Recent Update on the Morphological Classification of Intraductal Papillary Neoplasm of the Bile Duct: Correlation with Postoperative Prognosis and Pathological FeaturesPLOS ONE

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Reviewer #1: The manuscript “A Recent Update on the Morphological Classification of Intraductal Papillary Neoplasm of the Bile Duct: Correlation with Postoperative Prognosis and Pathological Features” by Noguchi et al. examines 42 IPNBs and classifies them using a morphological system derived through radiologic characterization of IPNBs as branched type, main duct type, or mixed. They also classified them using the Japanese-Korean / WHO system as type 1 or type 2 based on histopathology. The authors evaluated post-operative survival based on several clinical-pathologic parameters, including by their proposed morphologic system. They found that mixed type IPNBs had worse survival compared to the others.

This paper represents an update on an earlier publication by this institution from 2013 and it includes more cases now. However, some fundamental flaws remain that make me skeptical of the validity of their proposed classification.

1) The mixed type only had 6 cases, a very small sample size that barely resulted in statistical differences on survival analysis. With so few cases, it is impossible to do meaningful multivariate regressions. My concern is that the mixed type may simply represent a more advanced stage disease, whereby tumour has expanded beyond its main duct or branch duct origin to involve adjacent regions. Although size or span can be difficult to measure in these types of lesions, I wonder if these are simply “larger” or at least more advanced stage tumours. In other words, I’m skeptical that the mixed morphology is an independent prognosticator that couldn’t be supplanted by other related, existing parameters such as size or stage.

2) There is some overlap between the intrahepatic versus extrahepatic anatomic classification as well as the type 1 and type 2 pathologic classifications with the proposed morphologic classification. Kim et al (reference 12) showed that intrahepatic versus extrahepatic location did not correlate with survival in a larger sample size. The authors argue that their morphologic system does correlate with survival due to more extensive spread in the mixed type. Couldn’t a similar classification be made for “mixed intra-hepatic and extrahepatic involvement” instead? Do mixed intra and extra-hepatic tumours have different prognosis from those only involving intra or only involving extra?

3) The authors posit that the branch duct tumours are originating from peri-biliary glands, but since all the branch ducts tumours were intrahepatic, couldn’t they just be from smaller branches of intrahepatic ducts, rather than peri-biliary glands?

4) With respect to survival analysis, disease specific survival is defined as per usual. However, the most common definition of “recurrence free survival” includes all deaths, but the authors chose to use a “recurrence-free disease-specific survival”, which is not a common oncologic outcome measure. I wonder if this very specific definition was chosen preferentially after multiple survival parameters were analyzed.

5) Although the authors argue that the more aggressive nature of the mixed type could guide surgical management, the bulk of surgical decision making is still based on anatomical location, which dictates whether hepatectomy, bile duct resection, or pancreaticoduodenectomy is performed.

In summary, although the finding that a mixed main/branched duct morphology potentially signals worse prognosis, this study has two main limitations. One is that the sample size for this category is very small (n=6). Secondly, the authors have not demonstrated that this morphology based system represents an independent prognosticator distinct from size or stage.

Reviewer #2: Thank you for asking me to review this paper by Noguchi and colleagues. The authors have reviewed 42 cases of IPNB (32 cases available for path review). The have proposed a new morphological classification and examined its clinical impact.

Overall, I found this paper to be interesting. The morphological classification is of value, although I suspect it will need a far larger study for this to be taken up into practice. It is very difficult to conclude much from a 42 patient study. I have made recommendations for improvement:

-How did you identify cases of IPNB? Was this from existing pathology records? From a database? By re-reviewing all existing cases of biliary tract tumors? How did you identify patients with IPNB prior to 2010, prior to the WHO definition being published? Did you review pathological specimens retrospectively? Did you search your institutional pathological database with keywords? This should be explained fully.

-In the methods, it would be best not to repeat definitions, but rather to present methods by which you went about determining whether a patient had IPNB and its assigned WHO subtype. This is not described and certainly should be. More importantly, was this done retrospectively by re-reviewing all identified cases? How many pathologists re-reviewed the slides?

-Please remove all data from the methods. (e.g. paragraph presenting typical cases of sub-types of IPNB, with number of cases, this belongs in the results)

-Please remove figure captions from the main manuscript, as it is very hard to read through properly.

-I would suggest removing p-values from table 1, as the number of patients is very small and the extreme number of hypothesis testing is not useful and subject to chance findings.

-What drives the differences in postoperative oncologic outcomes between branch-, main-, and mixed-type lesions? Is it simply a matter of complete surgical resection? If so, there really is not much of a difference, other than mixed lesions being more diffuse and difficult to resect fully.

-Recurrence/oncologic outcomes should be limited to invasive cancer cases of course.

-It is not clear to me how surgeons should use this classification? Does this influence the decision to resect patients?

-There are far too many figures for the sample size.

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Reviewer #2: Yes:  Guillaume Martel

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PLoS One. 2025 May 28;20(5):e0325081. doi: 10.1371/journal.pone.0325081.r003

Author response to Decision Letter 0


2 May 2025

Reviewer #1

General Comment:

The manuscript “A Recent Update on the Morphological Classification of Intraductal Papillary Neoplasm of the Bile Duct: Correlation with Postoperative Prognosis and Pathological Features” by Noguchi et al. examines 42 IPNBs and classifies them using a morphological system derived through radiologic characterization of IPNBs as branched type, main duct type, or mixed. They also classified them using the Japanese-Korean / WHO system as type 1 or type 2 based on histopathology. The authors evaluated postoperative survival based on several clinical-pathologic parameters, including by their proposed morphologic system. They found that mixed type IPNBs had worse survival compared to the others.

This paper represents an update on an earlier publication by this institution from 2013 and it includes more cases now. However, some fundamental flaws remain that make me skeptical of the validity of their proposed classification.

Our response to the general comment:

We sincerely appreciate your thoughtful and thorough evaluation of our manuscript. In this revised version, we have carefully addressed each of your comments and provided additional clarification to support the validity of our proposed morphological classification. We hope that our responses and revisions adequately address your concerns and improve the quality of the manuscript.

Comment 1: The mixed type only had 6 cases, a very small sample size that barely resulted in statistical differences on survival analysis. With so few cases, it is impossible to do meaningful multivariate regressions. My concern is that the mixed type may simply represent a more advanced stage disease, whereby tumor has expanded beyond its main duct or branch duct origin to involve adjacent regions. Although size or span can be difficult to measure in these types of lesions, I wonder if these are simply “larger” or at least more advanced stage tumors. In other words, I’m skeptical that the mixed morphology is an independent prognosticator that couldn’t be supplanted by other related, existing parameters such as size or stage.

Comment 2: There is some overlap between the intrahepatic versus extrahepatic anatomic classification as well as the type 1 and type 2 pathologic classifications with the proposed morphologic classification. Kim et al (reference 12) showed that intrahepatic versus extrahepatic location did not correlate with survival in a larger sample size. The authors argue that their morphologic system does correlate with survival due to more extensive spread in the mixed type. Couldn’t a similar classification be made for “mixed intrahepatic and extrahepatic involvement” instead? Do mixed intra and extra-hepatic tumours have different prognosis from those only involving intra or only involving extra?

Our response to the comment 1 and 2:

Your insightful comment highlighted a fundamental concern: the possibility that the poor prognosis observed in the mixed-type IPNB may simply reflect the adverse outcomes associated with larger or more extensively spreading tumors. If so, the need for a new morphological classification would be questionable. To address this concern appropriately, a comparison between our morphological classification and established indicators of tumor progression—such as tumor size or staging—would be required, ideally through multivariate analysis. However, as you also pointed out, the small sample size—the greatest limitation of our study—does not tolerate this statistical approach.

To address this issue despite the limited sample size, we conducted survival analyses comparing our morphological classification with indicators of tumor extent and progression. While indirect, we believe this clearly defined approach yields meaningful insights. First, we compared survival outcomes according to anatomical spread—limited to intrahepatic ducts, extrahepatic ducts, or involving both (Figure 2B). Survival did not significantly differ based on anatomical extent alone, suggesting that our morphological classification captures biological characteristics beyond tumor size or extent. Although the underlying factors remain unclear, the observed association with histopathological subtypes may be relevant. At the very least, morphological classification appears to be distinguishable from tumor extent. Second, to evaluate the impact of tumor progression, we focused on patients with invasive IPNB to enhance the validity of comparisons. Invasive IPNBs are treated as cholangiocarcinomas, and staging differs depending on tumor location—intrahepatic, perihilar, or distal bile duct—each with its own criteria. As you correctly noted, stage-based comparisons would be ideal, but due to differing staging systems, meaningful integration was not feasible. Instead, we used two common indicators of progression in bile duct cancers—depth of invasion and lymph node metastasis—to assess their association with prognosis. Both showed stronger statistical associations with prognosis than our morphological classification. However, these indicators are only available postoperatively, whereas our morphological classification can be assessed preoperatively, thus offering a distinct clinical advantage.

Taken together, our morphological classification may offer prognostic value beyond simply reflecting tumor size and its extent, and provide distinct clinical utility from tumor progression indicators by enabling preoperative prediction. The revisions are listed below.

Revisions to Figures:

• In Figure 2, DSS according to tumor extent was added. We also clarified that this analysis included all IPNB patients, distinguishing it from the survival analysis of patients with invasive IPNB shown in Figure 3. The legend for Figure 2 has been revised accordingly.

• In Figure 3, to evaluate the impact of tumor progression, we focused on patients with invasive IPNB in survival analysis according to pathological tumor progression factors. The legend for Figure 3 has been revised accordingly.

Revisions to manuscript:

• On Page 13: In the Results section “Postoperative survival by morphology and lesion extent in all IPNB cases”, we added the results of DSS by tumor extent as follows: As shown in Figure 2B, DSS did not show significant differences among the three groups based on tumor lesion extent (p=0.167 between intrahepatic and extrahepatic bile duct lesions, p=0.222 between intrahepatic and both lesions).

• On Page 14: In the Results section, we added a new subsection titled “Postoperative Survival by Pathological Tumor Progression Factors in IPNB with Associated Invasive Carcinoma,” which includes the following content: In thirty-one patients with IPNB with associated invasive carcinoma, DSS was compared based on pathological tumor progression factors. All patients with tumors confined to the mucosal (M) or fibromuscular (FM) layers survived without disease-specific death for 5 years after surgery. In contrast, patients with tumor invasion beyond the bile duct wall (serosal exposure [SE] or serosal invasion [SI]) had 1-, 3-, and 5-year DSS rates of 80%, 0%, and 0%, respectively, which were significantly lower (p < 0.001; Figure 3A). Patients with tumor extension to the subserosal (SS) or serosal (S) layers also had lower DSS compared to those with M or FM invasion (p = 0.037), although the difference became more evident after 5 years postoperatively. In patients with lymph node metastasis, the 1-, 3-, and 5-year DSS were significantly lower compared to those without lymph node metastasis. The DSS rates were 96%, 91%, and 91% versus 100%, 67%, and 67%, respectively (p=0.021, Figure 3B). In patients with residual tumor (R1 or R2), the 1-, 3-, and 5-year DSS were 86%, 64%, and 64%, respectively. Although these rates were lower than those in patients who underwent curative resection, the difference was not statistically significant (p=0.119, Figure 3C).

• On Page 16, Line 288: In the Discussion section, we emphasized that the morphological classification has significance beyond merely reflecting tumor extent, and that it offers clinical utility by being assessable preoperatively—unlike pathological factors that are strongly associated with prognosis but only available postoperatively. The revised sentences are as follows: However, lesion extent alone does not appear to fully account for the poor prognosis associated with the mixed type. As shown in Figure 2B, there were no significant differences in DSS among patients with intrahepatic, extrahepatic, or both intra- and extrahepatic tumor involvement. This suggests that our classification reflects not only the anatomical extent of the tumor but also underlying biological characteristics—for example, its association with pathological subtypes. We next examined the relationship between prognosis and cancer staging. In invasive IPNB, tumor stage is determined according to different classification systems based on tumor location—namely, intrahepatic, perihilar, or distal bile duct cancer—making direct comparison across cases impractical. Instead, we focused on two common oncologic factors: depth of invasion and lymph node metastasis, which can serve as surrogates for pathological staging. As shown in Figure 3, both were strongly associated with poor prognosis and, in terms of p-values, were even more predictive than morphological subtype. However, as these factors are only assessable postoperatively, our morphological classification offers a major advantage by enabling preoperative prognostic assessment and supporting treatment strategy.

Comment 3: The authors posit that the branch duct tumors are originating from peri-biliary glands, but since all the branch ducts tumors were intrahepatic, couldn’t they just be from smaller branches of intrahepatic ducts, rather than peri-biliary glands?

Our response to the comment 3: Thank you for your insightful comment. We revisited the literature regarding the histogenesis of IPNB and found that its origin is considered to be from both the peribiliary glands (PBGs) and the biliary epithelium (Ref#1). Since PBGs are distributed throughout both the intrahepatic and extrahepatic bile ducts, IPNBs originating from PBGs may potentially exhibit any of the morphological subtypes—branched, main duct, or mixed (Ref#2, #3). The same applies to lesions arising from the biliary epithelium. Therefore, although the precise cellular and tissue origins of IPNB remain to be unveiled, the idea that PBGs origin strictly corresponds to the branched type appears overly simplistic.

As you suggested, IPNBs derived from small bile ducts beyond the segmental ducts are likely to arise intrahepatically and to exhibit a branched-type morphology. We have added your consideration to the Discussion section and clarified that IPNB may arise from two potential origins as follows on Page 15, Line 259: Previous morphological classifications of IPNB considered the lesion location (intrahepatic vs. extrahepatic) as a key factor (8,10,12). In contrast, our new morphological criteria do not take lesion location into account. This is based on the understanding that IPNB can arise not only from biliary epithelial cells but also from peribiliary glands (PBGs) (20)—accessory glands distributed along both intrahepatic and extrahepatic bile ducts, which contribute to secretion and epithelial repair (18,21). Lesions derived from biliary epithelium, when arising in small bile ducts (after the segmental branches), typically may present as the branched type and be in the intrahepatic bile ducts. In contrast, PBG-derived lesions may occur irrespective of intrahepatic or extrahepatic bile duct, as PBGs are present throughout the biliary tract.

References:

#1 Nakagawa H, Hayata Y, Yamada T, Kawamura S, Suzuki N, Koike K. Peribiliary Glands as the Cellular Origin of Biliary Tract Cancer. Int J Mol Sci. 2018;19: 1745. doi:10.3390/ijms19061745

#2 Miyata T, Uesaka K, Nakanuma Y. Cystic and Papillary Neoplasm at the Hepatic Hilum Possibly Originating in the Peribiliary Glands. Case Rep Pathol. 2016;2016: 9130754. doi:10.1155/2016/9130754

#3 Uchida T, Yamamoto Y, Ito T, Okamura Y, Sugiura T, Uesaka K, et al. Cystic micropapillary neoplasm of peribiliary glands with concomitant perihilar cholangiocarcinoma. World J Gastroenterol. 2016;22: 2391–2397. doi:10.3748/wjg.v22.i7.2391)

Comment 4: With respect to survival analysis, disease specific survival is defined as per usual. However, the most common definition of “recurrence free survival” includes all deaths, but the authors chose to use a “recurrence-free disease-specific survival”, which is not a common oncologic outcome measure. I wonder if this very specific definition was chosen preferentially after multiple survival parameters were analyzed.

Our response to the comment 4: We sincerely apologize for the confusion caused. We would like to clarify that the recurrence-free survival (RFS) used in our analysis were not arbitrarily selected. Given that our study cohort includes patients treated as early as 1976, many patients have already died from non-disease-specific causes. Combined with the small sample size, we considered disease-specific mortality to be a more appropriate foundation for accurate time-to-event analysis related to tumor factors. Accordingly, we used disease-specific survival (DSS) as our primary survival endpoint and employed DSS + recurrence as the event definition for RFS.

However, as you rightly pointed out, this approach carries the risk of confusion, and since our intent was to assess recurrence alone, we decided to revise the analysis and simplify the content. Specifically, we now present cumulative recurrence rates instead of RFS. As also suggested by Reviewer #2, recurrence analysis should be limited to cases of invasive carcinoma. Therefore, we evaluated the relationship between morphological subtypes and cumulative recurrence rates in patients with IPNB with associated invasive carcinoma. The results have been added to Figure 4 and described in the Results section on Page 14, Line 242 as follows: Postoperative recurrence by morphology in IPNB with associated invasive carcinoma. The association between postoperative recurrence and morphological subtypes was evaluated in patients with invasive IPNB. No recurrence was observed in the branched type. In contrast, the mixed type showed a high recurrence incidence, with 1-, 3-, and 5-year cumulative recurrence rates of 25%, 25%, and 62%, respectively (p=0.074 vs. branched type, Figure 4). In the main duct type, the recurrence risk was intermediate, with 1-, 3-, and 5-year cumulative recurrence rates of 6%, 6%, and 13%, respectively, and no significant difference compared to the branched type (p=0.246).

Comment 5: Although the authors argue that the more aggressive nature of the mixed type could guide surgical management, the bulk of surgical decision making is still based on anatomical location, which dictates whether hepatectomy, bile duct resection, or pancreaticoduodenectomy is performed. In summary, although the finding that a mixed main/branched duct morphology potentially signals worse prognosis, this study has two main limitations. One is that the sample size for this category is very small (n=6). Secondly, the authors have not demonstrated that this morphology based system represents an independent prognosticator distinct from size or stage.

Our response to the comment 5: We sincerely appreciate your insightful and constructive feedback. As you rightly pointed out, the surgical approach for IPNB largely depends on the anatomical location of the lesion. In this context, we believe our proposed morphological classification provides clinical value in the determination of appropriate resection extent. For example, mixed-type IPNBs may require wider resections, while branched-type lesions could allow for more limited, minimally invasive approaches (laparoscopic or robotic). In cases where curative resection necessitates highly invasive procedures such as hepatopancreatoduodenectomy, this classification may support the rationale for surgical aggressiveness. In addition to these supportive roles, given the association between morphology and postoperative recurrence (Figure 4), our classification may contribute to postoperative treatmen

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Decision Letter 1

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<p>A Recent Update on the Morphological Classification of Intraductal Papillary Neoplasm of the Bile Duct: Correlation with Postoperative Prognosis and Pathological Features

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Associated Data

    This section collects any data citations, data availability statements, or supplementary materials included in this article.

    Supplementary Materials

    S1 Table. Patient demographics according to pathological subtype.

    Abbreviations: CIS, carcinoma in situ; IPNB, intraductal papillary neoplasm of the bile duct.

    (DOCX)

    pone.0325081.s001.docx (29.3KB, docx)
    S1 Fig. Study flow.

    Abbreviation: BilIN, Biliary intraepithelial neoplasia; lPNB, intraductal papillary neoplasm of the bile duct.

    (TIFF)

    pone.0325081.s002.tiff (8.9MB, tiff)
    S2 Fig. Histopathological features of the pathological subtypes of IPNB: Type 1 or 2.

    (A) Pathological Type 1 of IPNB. (A-a) A monotonous pattern of well-organized papillary-villous growth with a fine fibrovascular core appears within the cyst. Neoplastic cells show an overall well-organized arrangement. (A-b) A component of low to intermediate dysplasia is present. (B) Pathological Type 2 of IPNB. (B-a) In the dilated bile duct, various papillary architectures with thick fibrovascular stalks exhibit complex, irregular, and heterogeneous growth. (B-b) Neoplastic cells display nuclear hyperchromasia, stratification, and disordered polarity. Most cells show high-grade dysplasia. Abbreviation: lPNB, intraductal papillary neoplasm of the bile duct.

    (TIFF) (TIFF)

    pone.0325081.s003.tiff (8.8MB, tiff)
    S3 Fig. Typical case of the branched-type IPNB.

    (A) CT imaging revealed a cystic lesion between liver segments 3 and 4 (arrowheads), with an enhanced mural nodule present within the cyst (arrow). (B) Endoscopic demonstrated mural nodules that were enhanced with a contrast agent (arrow). (C) ERC showed no bile duct dilation or extracystic lesions. (D) Histological examination identified a papillary growth tumor within the cystic lesion, leading to a diagnosis of IPNB associated with invasive carcinoma. Abbreviations: EUS, endoscopic retrograde cholangiography; IPNB, intraductal papillary neoplasm of the bile duct; US, ultrasound.

    (TIFF)

    S4 Fig. Typical case of the main duct-type IPNB.

    (A) A main duct-type IPNB with a mural nodule in the extrahepatic bile duct. (A-a) A mural nodule (arrowhead) was detected in the intrapancreatic bile duct on CT. (A-b) ERC demonstrated diffuse dilation of the entire bile duct proximal to the tumor. (A-c) The resected specimen obtained by pancreaticoduodenectomy showed a solid white tumor (*). (A-d) Histologically, the tumor exhibited a papillary architecture with heterogeneous growth patterns and was diagnosed as high-grade intraepithelial neoplasia (equivalent to CIS). (B) A main duct-type IPNB with localized wall thickening in the intrahepatic bile duct. (B-a) CT revealed wall thickening (arrowhead) and localized bile duct dilation (arrow) in the posterior branch. (B-b) PET-CT demonstrated FDG uptake in the lesion along the dilated posterior branch (arrow). (B-c) ERC showed wall thickening (arrowheads) in the corresponding area. (B-d) In the resected specimen, thickening of the posterior bile duct wall and a papillary tumor with mucin production were observed. (B-e) Histologically, the lesion consisted of papillary tumor cells, including invasive adenocarcinoma with heterogeneous growth patterns, leading to the diagnosis of IPNB with associated invasive carcinoma. Abbreviations: CIS, carcinoma in situ; CT, computed tomography; ERC, endoscopic retrograde cholangiography; FDG, fluorodeoxyglucose; PET, positron emission tomography; IPNB, intraductal papillary neoplasm of the bile duct.

    (TIFF)

    pone.0325081.s005.tiff (9.2MB, tiff)
    S5 Fig. Typical case of the mixed-type IPNB.

    The mixed type IPNB is characterized by both cystic and bile duct features. (A) CT showed a multilobular cystic lesion (arrowheads) extensively occupying in the left lobe. (B) In MRCP, entire bile duct dilation without obstruction was identified besides the intrahepatic cystic lesion (arrowheads). (C) ERC showed defects in biliary truct and a bulging papilla of Vater, resulting from hypersecretion of mucin. (D) Resected specimen of the left lobe exhibited a multilobular cystic lesion with diagnosis of IPNB with associated invasive carcinoma. Abbreviations: CT, computed tomography; ERC, endoscopic retrograde cholangiography; MRCP, magnetic resonance cholangiopancreatography; IPNB, intraductal papillary neoplasm of the bile duct.

    (TIFF)

    S6 Fig. Postoperative survival by the pathological subtypes in all IPNB cases.

    Postoperative DSS in patients with IPNB was compared according to pathological subtypes. Although the 1-, 3-, and 5-year survival rates in Type 2 (95%, 76%, and 76%, respectively) were lower than those in Type 1, the difference was not statistically significant (p = 0.151). Abbreviations: DSS, disease-specific survival; IPNB, intraductal papillary neoplasm of the bile duct.

    (TIFF)

    pone.0325081.s007.tiff (8.6MB, tiff)
    S7 Fig. A 14-year follow-up case of mixed type: At the time of diagnosis.

    A 57-year-old female. (A) An intrahepatic cyst (arrowhead) was incidentally detected on CT. The lesion was in segments 5–8 and exhibited a mural nodule (yellow arrow). (B) Abdominal ultrasonography revealed an enhanced mural nodule (yellow arrow) within the cystic lesion (arrowhead), and a biopsy was performed on the nodule. (C) The biopsy specimen showed no evidence of malignancy. Since there were no abnormal features in the bile duct, such as dilation or wall thickening, she was diagnosed with branched-type IPNB. Although surgery was planned, the patient chose surveillance due to the absence of malignant findings. Abbreviations: IPNB, intraductal papillary neoplasm of the bile duct.

    (TIFF)

    pone.0325081.s008.tiff (8.6MB, tiff)
    S8 Fig. A 14-year follow-up case of mixed type: At the time of surgery.

    (A) (B) Fourteen years later, the cystic lesion (arrowhead) and the mural nodule (yellow arrow) had enlarged on CT. Additionally, dilatation of both the intrahepatic bile duct (blue arrowhead) and the extrahepatic bile duct (*) was observed. (C) Cholangiography revealed a cystic lesion (arrowhead) connected to the bile duct and dilated bile ducts without obstruction (*). (D) Cholangioscopy demonstrated mucin secretion and an intraluminally growing papillary tumor in the right main hepatic duct. Morphologically, the lesion was diagnosed as the mixed-type IPNB due to the presence of both the cystic lesion and bile duct dilatation without obstruction. Right hepatectomy and caudate lobectomy with extrahepatic bile duct resection were performed. (E) In the specimen, a mucin-producing papillary tumor (yellow arrow) was identified within the cystic lesion (arrowhead). While most of the cyst wall epithelium was adenoma, the tumor was an adenocarcinoma infiltrating the fibromuscular layer. Abbreviations: IPNB, intraductal papillary neoplasm of the bile duct.

    (TIFF)

    pone.0325081.s009.tiff (8.8MB, tiff)
    S1 Data. Dataset of resected IPNB cases.

    (XLSX)

    pone.0325081.s010.xlsx (16KB, xlsx)
    S2 Data. Dataset used for pathological subtype analysis.

    (XLSX)

    pone.0325081.s011.xlsx (15.4KB, xlsx)
    Attachment

    Submitted filename: 2025.5.2_R1_Responses to Reviewers.docx

    pone.0325081.s013.docx (51.1KB, docx)

    Data Availability Statement

    All relevant data are within the manuscript and its Supporting Information files.


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