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[Preprint]. 2025 Jul 19:2025.06.04.657776. Originally published 2025 Jun 4. [Version 3] doi: 10.1101/2025.06.04.657776

Persistent cortical excitatory neuron dysregulation in adult Chd8 haploinsufficient mice

Cesar P Canales, Stephanie A Lozano, Nicholas A Frost, Karol Cichewicz, Wellington Amaral, Nicolas Seban, Ethan Fenton, Ayanna Wade, Nickolas Chu, Emily Smith, Cory Ardekani, Samuel Frank, Jeffrey Bennett, Pierre Lavenex, Aspen Kopley-Smith, Darlene Rahbarian, Melissa Corea, Daniela Perla, Liam Davis, Jiyuan Zhu, Rebecca Ortiz, Paris Beauregard, Sarah Morse, Jacob Baker, Jingqi Sun, Boxuan Ma, Ju Lu, Vikaas S Sohal, David G Amaral, Yi Zuo, Alex S Nord
PMCID: PMC12157415  PMID: 40501938

Abstract

CHD8 mutations cause autism spectrum disorder, cognitive deficits, and macrocephaly. Chd8 +/- mouse models exhibit macrocephaly and transcriptional pathology, with inconsistent findings regarding neurogenesis, neuron function, and behavior. Via stereology and single nucleus transcriptomics (snRNA-seq), we found increased Chd8 +/- cortical volume was not explained by increase in neuron number. Differential expression (DE) was present across cortical cell types, with excitatory neurons exhibiting high DE burden and shared and subclass-specific DE signatures. Bulk RNA-seq DE of constitutive Chd8 +/- and conditional Camk2a-Cre Chd8 +/- mice identified shared transcriptional pathology. DE in synaptosomal versus nuclear mRNA identified overlapping DEGs, but also significant differences and exaggerated synaptosomal changes. Building on DE findings implicating glutamatergic neurons, we found Chd8 +/- mice exhibited altered excitatory neuron spine density and dynamics, decreased GCaMP activity correlation, and sleep perturbation. Thus, Chd8 haploinsufficiency causes lasting excitatory neuron dysfunction, perturbs RNA regulation beyond transcription, and impacts neuronal properties, cortical microcircuits, and behavior.

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