Skip to main content
Biochemical Journal logoLink to Biochemical Journal
. 1996 Apr 15;315(Pt 2):429–434. doi: 10.1042/bj3150429

Molecular cloning and functional expression of human deoxyhypusine synthase cDNA based on expressed sequence tag information.

Y P Yan 1, Y Tao 1, K Y Chen 1
PMCID: PMC1217213  PMID: 8615810

Abstract

Deoxyhypusine synthase is an NAD(+)-dependent enzyme that catalyses the formation of a deoxyhypusine residue on the eukaryotic initiation factor 5A (eIF-5A) precursor by transferring an aminobutyl moiety from spermidine to the epsilon-amino group of a unique lysine residue. We have recently cloned and characterized the Neurospora crassa deoxyhypusine synthase cDNA using a reverse genetics approach. A GenBank search showed that a stretch of the deduced amino acid sequence (96 amino acids) of Neurospora deoxyhypusine synthase matches a short human expressed sequence tag (EST), Z25337, with greater than 70% amino acid identity. Gene-specific primers based on this EST were used together with universal primers to obtain 1219 bp and 1078 bp cDNAs from a human cDNA library. The 1219 bp and 1078 bp sequences, each containing an open reading frame, encode polypeptides of respectively 368 and 321 amino acids. The short sequence is identical to the long one except that it is missing a stretch of 47 amino acids spanning residues 261-307. The 368-amino-acid sequence of human deoxyhypusine synthase shares a high degree of identity ( > 50%) and similarity ( > 60%) with that of the Neurospora and yeast deoxyhypusine synthases. After cloning into an expression vector, the 368-amino-acid recombinant protein exhibits high deoxyhypusine synthase activity. In contrast, the 321-amino-acid recombinant protein shows no detectable activity.

Full Text

The Full Text of this article is available as a PDF (823.0 KB).

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Altschul S. F., Gish W., Miller W., Myers E. W., Lipman D. J. Basic local alignment search tool. J Mol Biol. 1990 Oct 5;215(3):403–410. doi: 10.1016/S0022-2836(05)80360-2. [DOI] [PubMed] [Google Scholar]
  2. Chen K. Y. An 18000-dalton protein metabolically labeled by polyamines in various mammalian cell lines. Biochim Biophys Acta. 1983 Apr 20;756(3):395–402. doi: 10.1016/0304-4165(83)90350-1. [DOI] [PubMed] [Google Scholar]
  3. Chen K. Y., Dou Q. P. NAD+ stimulated the spermidine-dependent hypusine formation on the 18 kDa protein in cytosolic lysates derived from NB-15 mouse neuroblastoma cells. FEBS Lett. 1988 Mar 14;229(2):325–328. doi: 10.1016/0014-5793(88)81149-9. [DOI] [PubMed] [Google Scholar]
  4. Chen K. Y., Liu A. Y. Differences in polyamine metabolism of the undifferentiated and differentiated neuroblastoma cells. Metabolic labeling of an 18,000-M(r) protein by [14C]putrescine and the conversion of putrescineto GABA. FEBS Lett. 1981 Nov 2;134(1):71–74. doi: 10.1016/0014-5793(81)80553-4. [DOI] [PubMed] [Google Scholar]
  5. Cooper H. L., Park M. H., Folk J. E. Posttranslational formation of hypusine in a single major protein occurs generally in growing cells and is associated with activation of lymphocyte growth. Cell. 1982 Jul;29(3):791–797. doi: 10.1016/0092-8674(82)90441-x. [DOI] [PubMed] [Google Scholar]
  6. Dou Q. P., Chen K. Y. Characterization and reconstitution of a cell free system for NAD(+)-dependent deoxyhypusine formation on the 18 kDa eIF-4D precursor. Biochim Biophys Acta. 1990 Nov 9;1036(2):128–137. doi: 10.1016/0304-4165(90)90024-q. [DOI] [PubMed] [Google Scholar]
  7. Jakus J., Wolff E. C., Park M. H., Folk J. E. Features of the spermidine-binding site of deoxyhypusine synthase as derived from inhibition studies. Effective inhibition by bis- and mono-guanylated diamines and polyamines. J Biol Chem. 1993 Jun 25;268(18):13151–13159. [PubMed] [Google Scholar]
  8. Joe Y. A., Wolff E. C., Park M. H. Cloning and expression of human deoxyhypusine synthase cDNA. Structure-function studies with the recombinant enzyme and mutant proteins. J Biol Chem. 1995 Sep 22;270(38):22386–22392. doi: 10.1074/jbc.270.38.22386. [DOI] [PubMed] [Google Scholar]
  9. Katahira J., Ishizaki T., Sakai H., Adachi A., Yamamoto K., Shida H. Effects of translation initiation factor eIF-5A on the functioning of human T-cell leukemia virus type I Rex and human immunodeficiency virus Rev inhibited trans dominantly by a Rex mutant deficient in RNA binding. J Virol. 1995 May;69(5):3125–3133. doi: 10.1128/jvi.69.5.3125-3133.1995. [DOI] [PMC free article] [PubMed] [Google Scholar]
  10. Klier H., Csonga R., Steinkasserer A., Wöhl T., Lottspeich F., Eder J. Purification and characterization of human deoxyhypusine synthase from HeLa cells. FEBS Lett. 1995 May 8;364(2):207–210. doi: 10.1016/0014-5793(95)00394-o. [DOI] [PubMed] [Google Scholar]
  11. Kyte J., Doolittle R. F. A simple method for displaying the hydropathic character of a protein. J Mol Biol. 1982 May 5;157(1):105–132. doi: 10.1016/0022-2836(82)90515-0. [DOI] [PubMed] [Google Scholar]
  12. Park M. H., Liberato D. J., Yergey A. L., Folk J. E. The biosynthesis of hypusine (N epsilon-(4-amino-2-hydroxybutyl)lysine). Alignment of the butylamine segment and source of the secondary amino nitrogen. J Biol Chem. 1984 Oct 10;259(19):12123–12127. [PubMed] [Google Scholar]
  13. Park M. H., Wolff E. C. Cell-free synthesis of deoxyhypusine. Separation of protein substrate and enzyme and identification of 1,3-diaminopropane as a product of spermidine cleavage. J Biol Chem. 1988 Oct 25;263(30):15264–15269. [PubMed] [Google Scholar]
  14. Park M. H., Wolff E. C., Folk J. E. Hypusine: its post-translational formation in eukaryotic initiation factor 5A and its potential role in cellular regulation. Biofactors. 1993 May;4(2):95–104. [PubMed] [Google Scholar]
  15. Rossmann M. G., Moras D., Olsen K. W. Chemical and biological evolution of nucleotide-binding protein. Nature. 1974 Jul 19;250(463):194–199. doi: 10.1038/250194a0. [DOI] [PubMed] [Google Scholar]
  16. Ruhl M., Himmelspach M., Bahr G. M., Hammerschmid F., Jaksche H., Wolff B., Aschauer H., Farrington G. K., Probst H., Bevec D. Eukaryotic initiation factor 5A is a cellular target of the human immunodeficiency virus type 1 Rev activation domain mediating trans-activation. J Cell Biol. 1993 Dec;123(6 Pt 1):1309–1320. doi: 10.1083/jcb.123.6.1309. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Schnier J., Schwelberger H. G., Smit-McBride Z., Kang H. A., Hershey J. W. Translation initiation factor 5A and its hypusine modification are essential for cell viability in the yeast Saccharomyces cerevisiae. Mol Cell Biol. 1991 Jun;11(6):3105–3114. doi: 10.1128/mcb.11.6.3105. [DOI] [PMC free article] [PubMed] [Google Scholar]
  18. Tabor C. W., Tabor H. Polyamines. Annu Rev Biochem. 1984;53:749–790. doi: 10.1146/annurev.bi.53.070184.003533. [DOI] [PubMed] [Google Scholar]
  19. Tao Y., Chen K. Y. Molecular cloning and functional expression of Neurospora deoxyhypusine synthase cDNA and identification of yeast deoxyhypusine synthase cDNA. J Biol Chem. 1995 Oct 13;270(41):23984–23987. doi: 10.1074/jbc.270.41.23984. [DOI] [PubMed] [Google Scholar]
  20. Tao Y., Chen K. Y. PCR-based cloning of the full-length Neurospora eukaryotic initiation factor 5A cDNA: polyhistidine-tagging and overexpression for protein affinity binding. Biochem J. 1994 Sep 1;302(Pt 2):517–525. doi: 10.1042/bj3020517. [DOI] [PMC free article] [PubMed] [Google Scholar]
  21. Tao Y., Chen K. Y. Purification of deoxyhypusine synthase from Neurospora crassa to homogeneity by substrate elution affinity chromatography. J Biol Chem. 1995 Jan 6;270(1):383–386. doi: 10.1074/jbc.270.1.383. [DOI] [PubMed] [Google Scholar]
  22. Tao Y., Skrenta H. M., Chen K. Y. Deoxyhypusine synthase assay based on the use of polyhistidine-tagged substrate and metal chelate-affinity chromatography. Anal Biochem. 1994 Aug 15;221(1):103–108. doi: 10.1006/abio.1994.1385. [DOI] [PubMed] [Google Scholar]
  23. Wolff E. C., Lee Y. B., Chung S. I., Folk J. E., Park M. H. Deoxyhypusine synthase from rat testis: purification and characterization. J Biol Chem. 1995 Apr 14;270(15):8660–8666. doi: 10.1074/jbc.270.15.8660. [DOI] [PubMed] [Google Scholar]

Articles from Biochemical Journal are provided here courtesy of The Biochemical Society

RESOURCES