Skip to main content
Biochemical Journal logoLink to Biochemical Journal
. 1996 Aug 1;317(Pt 3):721–729. doi: 10.1042/bj3170721

Baculovirus expression of two protein disulphide isomerase isoforms from Caenorhabditis elegans and characterization of prolyl 4-hydroxylases containing one of these polypeptides as their beta subunit.

J Veijola 1, P Annunen 1, P Koivunen 1, A P Page 1, T Pihlajaniemi 1, K I Kivirikko 1
PMCID: PMC1217545  PMID: 8760355

Abstract

Protein disulphide isomerase (PDI; EC 5.3.4.1) is a multifunctional polypeptide that is identical to the beta subunit of prolyl 4-hydroxylases. We report here on the cloning and expression of the Caenorhabditis elegans PDI/beta polypeptide and its isoform. The overall amino acid sequence identity and similarity between the processed human and C. elegans PDI/beta polypeptides are 61% and 85% respectively, and those between the C. elegans PDI/beta polypeptide and the PDI isoform 46% and 73%. The isoform differs from the PDI/beta and ERp60 polypeptides in that its N-terminal thioredoxin-like domain has an unusual catalytic site sequence -CVHC-. Expression studies in insect cells demonstrated that the C. elegans PDI/beta polypeptide forms an active prolyl 4-hydroxylase alpha 2 beta 2 tetramer with the human alpha subunit and an alpha beta dimer with the C. elegans alpha subunit, whereas the C. elegans PDI isoform formed no prolyl 4-hydroxylase with either alpha subunit. Removal of the 32-residue C-terminal extension from the C. elegans alpha subunit totally eliminated alpha beta dimer formation. The C. elegans PDI/beta polypeptide formed less prolyl 4-hydroxylase with both the human and C. elegans alpha subunits than did the human PDI/beta polypeptide, being particularly ineffective with the C. elegans alpha subunit. Experiments with hybrid polypeptides in which the C-terminal regions had been exchanged between the human and C. elegans PDI/beta polypeptides indicated that differences in the C-terminal region are one reason, but not the only one, for the differences in prolyl 4-hydroxylase formation between the human and C. elegans PDI/beta polypeptides. The catalytic properties of the C. elegans prolyl 4-hydroxylase alpha beta dimer were very similar to those of the vertebrate type II prolyl 4-hydroxylase tetramer, including the K(m) for the hydroxylation of long polypeptide substrates.

Full Text

The Full Text of this article is available as a PDF (583.3 KB).

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Altschul S. F., Gish W., Miller W., Myers E. W., Lipman D. J. Basic local alignment search tool. J Mol Biol. 1990 Oct 5;215(3):403–410. doi: 10.1016/S0022-2836(05)80360-2. [DOI] [PubMed] [Google Scholar]
  2. Bassuk J. A., Kao W. W., Herzer P., Kedersha N. L., Seyer J., DeMartino J. A., Daugherty B. L., Mark G. E., 3rd, Berg R. A. Prolyl 4-hydroxylase: molecular cloning and the primary structure of the alpha subunit from chicken embryo. Proc Natl Acad Sci U S A. 1989 Oct;86(19):7382–7386. doi: 10.1073/pnas.86.19.7382. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Cai H., Wang C. C., Tsou C. L. Chaperone-like activity of protein disulfide isomerase in the refolding of a protein with no disulfide bonds. J Biol Chem. 1994 Oct 7;269(40):24550–24552. [PubMed] [Google Scholar]
  4. Coulson A., Waterston R., Kiff J., Sulston J., Kohara Y. Genome linking with yeast artificial chromosomes. Nature. 1988 Sep 8;335(6186):184–186. doi: 10.1038/335184a0. [DOI] [PubMed] [Google Scholar]
  5. Darby N. J., Creighton T. E. Catalytic mechanism of DsbA and its comparison with that of protein disulfide isomerase. Biochemistry. 1995 Mar 21;34(11):3576–3587. doi: 10.1021/bi00011a012. [DOI] [PubMed] [Google Scholar]
  6. Edman J. C., Ellis L., Blacher R. W., Roth R. A., Rutter W. J. Sequence of protein disulphide isomerase and implications of its relationship to thioredoxin. Nature. 1985 Sep 19;317(6034):267–270. doi: 10.1038/317267a0. [DOI] [PubMed] [Google Scholar]
  7. Freedman R. B., Hirst T. R., Tuite M. F. Protein disulphide isomerase: building bridges in protein folding. Trends Biochem Sci. 1994 Aug;19(8):331–336. doi: 10.1016/0968-0004(94)90072-8. [DOI] [PubMed] [Google Scholar]
  8. Freedman R. B. The formation of protein disulphide bonds. Curr Opin Struct Biol. 1995 Feb;5(1):85–91. doi: 10.1016/0959-440x(95)80013-q. [DOI] [PubMed] [Google Scholar]
  9. Hawkins H. C., Freedman R. B. The reactivities and ionization properties of the active-site dithiol groups of mammalian protein disulphide-isomerase. Biochem J. 1991 Apr 15;275(Pt 2):335–339. doi: 10.1042/bj2750335. [DOI] [PMC free article] [PubMed] [Google Scholar]
  10. Helaakoski T., Annunen P., Vuori K., MacNeil I. A., Pihlajaniemi T., Kivirikko K. I. Cloning, baculovirus expression, and characterization of a second mouse prolyl 4-hydroxylase alpha-subunit isoform: formation of an alpha 2 beta 2 tetramer with the protein disulfide-isomerase/beta subunit. Proc Natl Acad Sci U S A. 1995 May 9;92(10):4427–4431. doi: 10.1073/pnas.92.10.4427. [DOI] [PMC free article] [PubMed] [Google Scholar]
  11. Helaakoski T., Vuori K., Myllylä R., Kivirikko K. I., Pihlajaniemi T. Molecular cloning of the alpha-subunit of human prolyl 4-hydroxylase: the complete cDNA-derived amino acid sequence and evidence for alternative splicing of RNA transcripts. Proc Natl Acad Sci U S A. 1989 Jun;86(12):4392–4396. doi: 10.1073/pnas.86.12.4392. [DOI] [PMC free article] [PubMed] [Google Scholar]
  12. Kivirikko K. I., Helaakoski T., Tasanen K., Vuori K., Myllylä R., Parkkonen T., Pihlajaniemi T. Molecular biology of prolyl 4-hydroxylase. Ann N Y Acad Sci. 1990;580:132–142. doi: 10.1111/j.1749-6632.1990.tb17925.x. [DOI] [PubMed] [Google Scholar]
  13. Kivirikko K. I., Myllylä R., Pihlajaniemi T. Protein hydroxylation: prolyl 4-hydroxylase, an enzyme with four cosubstrates and a multifunctional subunit. FASEB J. 1989 Mar;3(5):1609–1617. [PubMed] [Google Scholar]
  14. Kivirikko K. I., Myllylä R. Posttranslational enzymes in the biosynthesis of collagen: intracellular enzymes. Methods Enzymol. 1982;82(Pt A):245–304. doi: 10.1016/0076-6879(82)82067-3. [DOI] [PubMed] [Google Scholar]
  15. Koivu J., Myllylä R., Helaakoski T., Pihlajaniemi T., Tasanen K., Kivirikko K. I. A single polypeptide acts both as the beta subunit of prolyl 4-hydroxylase and as a protein disulfide-isomerase. J Biol Chem. 1987 May 15;262(14):6447–6449. [PubMed] [Google Scholar]
  16. Koivunen P., Helaakoski T., Annunen P., Veijola J., Räisänen S., Pihlajaniemi T., Kivirikko K. I. ERp60 does not substitute for protein disulphide isomerase as the beta-subunit of prolyl 4-hydroxylase. Biochem J. 1996 Jun 1;316(Pt 2):599–605. doi: 10.1042/bj3160599. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. LaMantia M. L., Lennarz W. J. The essential function of yeast protein disulfide isomerase does not reside in its isomerase activity. Cell. 1993 Sep 10;74(5):899–908. doi: 10.1016/0092-8674(93)90469-7. [DOI] [PubMed] [Google Scholar]
  18. Lyles M. M., Gilbert H. F. Catalysis of the oxidative folding of ribonuclease A by protein disulfide isomerase: dependence of the rate on the composition of the redox buffer. Biochemistry. 1991 Jan 22;30(3):613–619. doi: 10.1021/bi00217a004. [DOI] [PubMed] [Google Scholar]
  19. Lyles M. M., Gilbert H. F. Mutations in the thioredoxin sites of protein disulfide isomerase reveal functional nonequivalence of the N- and C-terminal domains. J Biol Chem. 1994 Dec 9;269(49):30946–30952. [PubMed] [Google Scholar]
  20. McCombie W. R., Adams M. D., Kelley J. M., FitzGerald M. G., Utterback T. R., Khan M., Dubnick M., Kerlavage A. R., Venter J. C., Fields C. Caenorhabditis elegans expressed sequence tags identify gene families and potential disease gene homologues. Nat Genet. 1992 May;1(2):124–131. doi: 10.1038/ng0592-124. [DOI] [PubMed] [Google Scholar]
  21. Myllylä R., Tuderman L., Kivirikko K. I. Mechanism of the prolyl hydroxylase reaction. 2. Kinetic analysis of the reaction sequence. Eur J Biochem. 1977 Nov 1;80(2):349–357. doi: 10.1111/j.1432-1033.1977.tb11889.x. [DOI] [PubMed] [Google Scholar]
  22. Noiva R., Freedman R. B., Lennarz W. J. Peptide binding to protein disulfide isomerase occurs at a site distinct from the active sites. J Biol Chem. 1993 Sep 15;268(26):19210–19217. [PubMed] [Google Scholar]
  23. Noiva R., Lennarz W. J. Protein disulfide isomerase. A multifunctional protein resident in the lumen of the endoplasmic reticulum. J Biol Chem. 1992 Feb 25;267(6):3553–3556. [PubMed] [Google Scholar]
  24. Otsu M., Omura F., Yoshimori T., Kikuchi M. Protein disulfide isomerase associates with misfolded human lysozyme in vivo. J Biol Chem. 1994 Mar 4;269(9):6874–6877. [PubMed] [Google Scholar]
  25. Parkkonen T., Kivirikko K. I., Pihlajaniemi T. Molecular cloning of a multifunctional chicken protein acting as the prolyl 4-hydroxylase beta-subunit, protein disulphide-isomerase and a cellular thyroid-hormone-binding protein. Comparison of cDNA-deduced amino acid sequences with those in other species. Biochem J. 1988 Dec 15;256(3):1005–1011. doi: 10.1042/bj2561005. [DOI] [PMC free article] [PubMed] [Google Scholar]
  26. Pelham H. R. Control of protein exit from the endoplasmic reticulum. Annu Rev Cell Biol. 1989;5:1–23. doi: 10.1146/annurev.cb.05.110189.000245. [DOI] [PubMed] [Google Scholar]
  27. Pihlajaniemi T., Helaakoski T., Tasanen K., Myllylä R., Huhtala M. L., Koivu J., Kivirikko K. I. Molecular cloning of the beta-subunit of human prolyl 4-hydroxylase. This subunit and protein disulphide isomerase are products of the same gene. EMBO J. 1987 Mar;6(3):643–649. doi: 10.1002/j.1460-2075.1987.tb04803.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  28. Prockop D. J., Kivirikko K. I. Collagens: molecular biology, diseases, and potentials for therapy. Annu Rev Biochem. 1995;64:403–434. doi: 10.1146/annurev.bi.64.070195.002155. [DOI] [PubMed] [Google Scholar]
  29. Puig A., Gilbert H. F. Anti-chaperone behavior of BiP during the protein disulfide isomerase-catalyzed refolding of reduced denatured lysozyme. J Biol Chem. 1994 Oct 14;269(41):25889–25896. [PubMed] [Google Scholar]
  30. Puig A., Lyles M. M., Noiva R., Gilbert H. F. The role of the thiol/disulfide centers and peptide binding site in the chaperone and anti-chaperone activities of protein disulfide isomerase. J Biol Chem. 1994 Jul 22;269(29):19128–19135. [PubMed] [Google Scholar]
  31. Rupp K., Birnbach U., Lundström J., Van P. N., Söling H. D. Effects of CaBP2, the rat analog of ERp72, and of CaBP1 on the refolding of denatured reduced proteins. Comparison with protein disulfide isomerase. J Biol Chem. 1994 Jan 28;269(4):2501–2507. [PubMed] [Google Scholar]
  32. Sanger F., Nicklen S., Coulson A. R. DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463–5467. doi: 10.1073/pnas.74.12.5463. [DOI] [PMC free article] [PubMed] [Google Scholar]
  33. Song J. L., Wang C. C. Chaperone-like activity of protein disulfide-isomerase in the refolding of rhodanese. Eur J Biochem. 1995 Jul 15;231(2):312–316. doi: 10.1111/j.1432-1033.1995.tb20702.x. [DOI] [PubMed] [Google Scholar]
  34. Veijola J., Koivunen P., Annunen P., Pihlajaniemi T., Kivirikko K. I. Cloning, baculovirus expression, and characterization of the alpha subunit of prolyl 4-hydroxylase from the nematode Caenorhabditis elegans. This alpha subunit forms an active alpha beta dimer with the human protein disulfide isomerase/beta subunit. J Biol Chem. 1994 Oct 28;269(43):26746–26753. [PubMed] [Google Scholar]
  35. Veijola J., Pihlajaniemi T., Kivirikko K. I. Co-expression of the alpha subunit of human prolyl 4-hydroxylase with BiP polypeptide in insect cells leads to the formation of soluble and insoluble complexes. Soluble alpha-subunit-BiP complexes have no prolyl 4-hydroxylase activity. Biochem J. 1996 Apr 15;315(Pt 2):613–618. doi: 10.1042/bj3150613. [DOI] [PMC free article] [PubMed] [Google Scholar]
  36. Vuori K., Myllylä R., Pihlajaniemi T., Kivirikko K. I. Expression and site-directed mutagenesis of human protein disulfide isomerase in Escherichia coli. This multifunctional polypeptide has two independently acting catalytic sites for the isomerase activity. J Biol Chem. 1992 Apr 15;267(11):7211–7214. [PubMed] [Google Scholar]
  37. Vuori K., Pihlajaniemi T., Marttila M., Kivirikko K. I. Characterization of the human prolyl 4-hydroxylase tetramer and its multifunctional protein disulfide-isomerase subunit synthesized in a baculovirus expression system. Proc Natl Acad Sci U S A. 1992 Aug 15;89(16):7467–7470. doi: 10.1073/pnas.89.16.7467. [DOI] [PMC free article] [PubMed] [Google Scholar]
  38. Vuori K., Pihlajaniemi T., Myllylä R., Kivirikko K. I. Site-directed mutagenesis of human protein disulphide isomerase: effect on the assembly, activity and endoplasmic reticulum retention of human prolyl 4-hydroxylase in Spodoptera frugiperda insect cells. EMBO J. 1992 Nov;11(11):4213–4217. doi: 10.1002/j.1460-2075.1992.tb05515.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  39. Wetterau J. R., Combs K. A., McLean L. R., Spinner S. N., Aggerbeck L. P. Protein disulfide isomerase appears necessary to maintain the catalytically active structure of the microsomal triglyceride transfer protein. Biochemistry. 1991 Oct 8;30(40):9728–9735. doi: 10.1021/bi00104a023. [DOI] [PubMed] [Google Scholar]
  40. Wetterau J. R., Combs K. A., Spinner S. N., Joiner B. J. Protein disulfide isomerase is a component of the microsomal triglyceride transfer protein complex. J Biol Chem. 1990 Jun 15;265(17):9800–9807. [PubMed] [Google Scholar]
  41. Wilson R., Ainscough R., Anderson K., Baynes C., Berks M., Bonfield J., Burton J., Connell M., Copsey T., Cooper J. 2.2 Mb of contiguous nucleotide sequence from chromosome III of C. elegans. Nature. 1994 Mar 3;368(6466):32–38. doi: 10.1038/368032a0. [DOI] [PubMed] [Google Scholar]
  42. de Jong L., van der Kraan I., de Waal A. The kinetics of the hydroxylation of procollagen by prolyl 4-hydroxylase. Proposal for a processive mechanism of binding of the dimeric hydroxylating enzyme in relation to the high kcat/Km ratio and a conformational requirement for hydroxylation of -X-Pro-Gly- sequences. Biochim Biophys Acta. 1991 Aug 9;1079(1):103–111. doi: 10.1016/0167-4838(91)90030-4. [DOI] [PubMed] [Google Scholar]
  43. von Heijne G. A new method for predicting signal sequence cleavage sites. Nucleic Acids Res. 1986 Jun 11;14(11):4683–4690. doi: 10.1093/nar/14.11.4683. [DOI] [PMC free article] [PubMed] [Google Scholar]

Articles from Biochemical Journal are provided here courtesy of The Biochemical Society

RESOURCES