Abstract
Three defensin-like peptides (DLPs) were isolated from platypus venom and sequenced. One of these peptides, DLP-1, was synthesized chemically and its three-dimensional structure was determined using NMR spectroscopy. The main structural elements of this 42-residue peptide were an anti-parallel beta-sheet comprising residues 15-18 and 37-40 and a small 3(10) helix spanning residues 10-12. The overall three-dimensional fold is similar to that of beta-defensin-12, and similar to the sodium-channel neurotoxin ShI (Stichodactyla helianthus neurotoxin I). However, the side chains known to be functionally important in beta-defensin-12 and ShI are not conserved in DLP-1, suggesting that it has a different biological function. Consistent with this contention, we showed that DLP-1 possesses no anti-microbial properties and has no observable activity on rat dorsal-root-ganglion sodium-channel currents.
Full Text
The Full Text of this article is available as a PDF (286.3 KB).
Selected References
These references are in PubMed. This may not be the complete list of references from this article.
- Barton G. J. ALSCRIPT: a tool to format multiple sequence alignments. Protein Eng. 1993 Jan;6(1):37–40. doi: 10.1093/protein/6.1.37. [DOI] [PubMed] [Google Scholar]
- Craik D., Munro S., Nielsen K., Shehan P., Tregear G., Wade J. The conformation of porcine-brain natriuretic peptide by two-dimensional NMR spectroscopy. Eur J Biochem. 1991 Oct 1;201(1):183–190. doi: 10.1111/j.1432-1033.1991.tb16272.x. [DOI] [PubMed] [Google Scholar]
- Fenner P. J., Williamson J. A., Myers D. Platypus envenomation--a painful learning experience. Med J Aust. 1992 Dec 7;157(11-12):829–832. doi: 10.5694/j.1326-5377.1992.tb141302.x. [DOI] [PubMed] [Google Scholar]
- Fogh R. H., Kem W. R., Norton R. S. Solution structure of neurotoxin I from the sea anemone Stichodactyla helianthus. A nuclear magnetic resonance, distance geometry, and restrained molecular dynamics study. J Biol Chem. 1990 Aug 5;265(22):13016–13028. doi: 10.2210/pdb2sh1/pdb. [DOI] [PubMed] [Google Scholar]
- Fox J. W., Elzinga M., Tu A. T. Amino acid sequence and disulfide bond assignment of myotoxin a isolated from the venom of Prairie rattlesnake (Crotalus viridis viridis). Biochemistry. 1979 Feb 20;18(4):678–684. doi: 10.1021/bi00571a020. [DOI] [PubMed] [Google Scholar]
- Gould A. R., Mabbutt B. C., Llewellyn L. E., Goss N. H., Norton R. S. Linear and cyclic peptide analogues of the polypeptide cardiac stimulant, anthopleurin-A. 1H-NMR and biological activity studies. Eur J Biochem. 1992 Jun 15;206(3):641–651. doi: 10.1111/j.1432-1033.1992.tb16969.x. [DOI] [PubMed] [Google Scholar]
- Güntert P., Mumenthaler C., Wüthrich K. Torsion angle dynamics for NMR structure calculation with the new program DYANA. J Mol Biol. 1997 Oct 17;273(1):283–298. doi: 10.1006/jmbi.1997.1284. [DOI] [PubMed] [Google Scholar]
- Holm L., Sander C. Protein structure comparison by alignment of distance matrices. J Mol Biol. 1993 Sep 5;233(1):123–138. doi: 10.1006/jmbi.1993.1489. [DOI] [PubMed] [Google Scholar]
- Hutchinson E. G., Thornton J. M. PROMOTIF--a program to identify and analyze structural motifs in proteins. Protein Sci. 1996 Feb;5(2):212–220. doi: 10.1002/pro.5560050204. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Hyberts S. G., Goldberg M. S., Havel T. F., Wagner G. The solution structure of eglin c based on measurements of many NOEs and coupling constants and its comparison with X-ray structures. Protein Sci. 1992 Jun;1(6):736–751. doi: 10.1002/pro.5560010606. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Inooka H., Kikuchi T., Endo S., Ishibashi Y., Wakimasu M., Mizuta E. Conformation in solution of porcine brain natriuretic peptide determined by combined use of nuclear magnetic resonance and distance geometry. Eur J Biochem. 1990 Oct 5;193(1):127–134. doi: 10.1111/j.1432-1033.1990.tb19313.x. [DOI] [PubMed] [Google Scholar]
- Koradi R., Billeter M., Wüthrich K. MOLMOL: a program for display and analysis of macromolecular structures. J Mol Graph. 1996 Feb;14(1):51-5, 29-32. doi: 10.1016/0263-7855(96)00009-4. [DOI] [PubMed] [Google Scholar]
- Ludvigsen S., Poulsen F. M. Positive theta-angles in proteins by nuclear magnetic resonance spectroscopy. J Biomol NMR. 1992 May;2(3):227–233. doi: 10.1007/BF01875318. [DOI] [PubMed] [Google Scholar]
- Marion D., Wüthrich K. Application of phase sensitive two-dimensional correlated spectroscopy (COSY) for measurements of 1H-1H spin-spin coupling constants in proteins. Biochem Biophys Res Commun. 1983 Jun 29;113(3):967–974. doi: 10.1016/0006-291x(83)91093-8. [DOI] [PubMed] [Google Scholar]
- Mebs D., Ownby C. L. Myotoxic components of snake venoms: their biochemical and biological activities. Pharmacol Ther. 1990;48(2):223–236. doi: 10.1016/0163-7258(90)90081-c. [DOI] [PubMed] [Google Scholar]
- Nicholson G. M., Willow M., Howden M. E., Narahashi T. Modification of sodium channel gating and kinetics by versutoxin from the Australian funnel-web spider Hadronyche versuta. Pflugers Arch. 1994 Oct;428(3-4):400–409. doi: 10.1007/BF00724524. [DOI] [PubMed] [Google Scholar]
- Norton R. S., Pallaghy P. K. The cystine knot structure of ion channel toxins and related polypeptides. Toxicon. 1998 Nov;36(11):1573–1583. doi: 10.1016/s0041-0101(98)00149-4. [DOI] [PubMed] [Google Scholar]
- O'Keefe M. P., Nedelkov D., Bieber A. L., Nieman R. A. Evidence for isomerization in myotoxin a from the prairie rattlesnake (Crotalus viridis viridis). Toxicon. 1996 Apr;34(4):417–434. doi: 10.1016/0041-0101(95)00154-9. [DOI] [PubMed] [Google Scholar]
- Piotto M., Saudek V., Sklenár V. Gradient-tailored excitation for single-quantum NMR spectroscopy of aqueous solutions. J Biomol NMR. 1992 Nov;2(6):661–665. doi: 10.1007/BF02192855. [DOI] [PubMed] [Google Scholar]
- Rance M., Sørensen O. W., Bodenhausen G., Wagner G., Ernst R. R., Wüthrich K. Improved spectral resolution in cosy 1H NMR spectra of proteins via double quantum filtering. Biochem Biophys Res Commun. 1983 Dec 16;117(2):479–485. doi: 10.1016/0006-291x(83)91225-1. [DOI] [PubMed] [Google Scholar]
- Selsted M. E., Tang Y. Q., Morris W. L., McGuire P. A., Novotny M. J., Smith W., Henschen A. H., Cullor J. S. Purification, primary structures, and antibacterial activities of beta-defensins, a new family of antimicrobial peptides from bovine neutrophils. J Biol Chem. 1993 Mar 25;268(9):6641–6648. [PubMed] [Google Scholar]
- Sibanda B. L., Thornton J. M. Beta-hairpin families in globular proteins. Nature. 1985 Jul 11;316(6024):170–174. doi: 10.1038/316170a0. [DOI] [PubMed] [Google Scholar]
- Weber J., Rösch P., Adermann K., Forssmann W. G., Wokaun A. 1H-NMR studies of the natriuretic peptide urodilatin: sequence-specific resonance assignment. Biochim Biophys Acta. 1994 Aug 17;1207(2):231–235. doi: 10.1016/0167-4838(94)00040-9. [DOI] [PubMed] [Google Scholar]
- Wilcox G. R., Fogh R. H., Norton R. S. Refined structure in solution of the sea anemone neurotoxin ShI. J Biol Chem. 1993 Nov 25;268(33):24707–24719. [PubMed] [Google Scholar]
- Wu W., Berkowitz G. A. K stimulation of ATPase activity associated with the chloroplast inner envelope. Plant Physiol. 1992 Jun;99(2):553–560. doi: 10.1104/pp.99.2.553. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Zimmermann G. R., Legault P., Selsted M. E., Pardi A. Solution structure of bovine neutrophil beta-defensin-12: the peptide fold of the beta-defensins is identical to that of the classical defensins. Biochemistry. 1995 Oct 17;34(41):13663–13671. doi: 10.1021/bi00041a048. [DOI] [PubMed] [Google Scholar]
- de Plater G. M., Martin R. L., Milburn P. J. The natriuretic peptide (ovCNP-39) from platypus (Ornithorhynchus anatinus) venom relaxes the isolated rat uterus and promotes oedema and mast cell histamine release. Toxicon. 1998 Jun;36(6):847–857. doi: 10.1016/s0041-0101(97)00176-1. [DOI] [PubMed] [Google Scholar]
- de Plater G., Martin R. L., Milburn P. J. A pharmacological and biochemical investigation of the venom from the platypus (Ornithorhynchus anatinus). Toxicon. 1995 Feb;33(2):157–169. doi: 10.1016/0041-0101(94)00150-7. [DOI] [PubMed] [Google Scholar]