Abstract
Maltodextrin phosphorylase from Escherichia coli (MalP) is a dimeric protein in which each approximately 90-kDa subunit contains active-site pyridoxal 5'-phosphate. To unravel factors contributing to the stability of MalP, thermal denaturations of wild-type MalP and a thermostable active-site mutant (Asn-133-->Ala) were compared by monitoring enzyme activity, cofactor dissociation, secondary structure content and aggregation. Small structural transitions of MalP are shown by Fourier-transform infrared spectroscopy to take place at approximately 45 degrees C. They are manifested by slight increases in unordered structure and (1)H/(2)H exchange, and reflect reversible inactivation of MalP. Aggregation of the MalP dimer is triggered by these conformational changes and starts at approximately 45 degrees C without prior release into solution of pyridoxal 5'-phosphate. It is driven by electrostatic rather than hydrophobic interactions between MalP dimers, and leads to irreversible inactivation of the enzyme. Aggregation is inhibited efficiently and specifically by oxyanions such as phosphate, and AMP which therefore, stabilize MalP against the irreversible denaturation step at 45 degrees C. Melting of the secondary structure in soluble and aggregated MalP takes place at much higher temperatures of approx. 58 and 67 degrees C, respectively. Replacement of Asn-133 by Ala does not change the mechanism of thermal denaturation, but leads to a shift of the entire pathway to a approximately 15 degrees C higher value on the temperature scale. Apart from greater stability, the Asn-133-->Ala mutant shows a 2-fold smaller turnover number and a 4.6-fold smaller energy of activation than wild-type MalP, probably indicating that the site-specific replacement of Asn-133 brings about a greater rigidity of the active-site environment of the enzyme. A structure-based model is proposed which explains the stabilizing interaction between MalP and oxyanions, or AMP.
Full Text
The Full Text of this article is available as a PDF (203.7 KB).
Selected References
These references are in PubMed. This may not be the complete list of references from this article.
- Arrondo J. L., Muga A., Castresana J., Goñi F. M. Quantitative studies of the structure of proteins in solution by Fourier-transform infrared spectroscopy. Prog Biophys Mol Biol. 1993;59(1):23–56. doi: 10.1016/0079-6107(93)90006-6. [DOI] [PubMed] [Google Scholar]
- Barford D., Hu S. H., Johnson L. N. Structural mechanism for glycogen phosphorylase control by phosphorylation and AMP. J Mol Biol. 1991 Mar 5;218(1):233–260. doi: 10.1016/0022-2836(91)90887-c. [DOI] [PubMed] [Google Scholar]
- Bañuelos S., Arrondo J. L., Goñi F. M., Pifat G. Surface-core relationships in human low density lipoprotein as studied by infrared spectroscopy. J Biol Chem. 1995 Apr 21;270(16):9192–9196. doi: 10.1074/jbc.270.16.9192. [DOI] [PubMed] [Google Scholar]
- Byler D. M., Susi H. Examination of the secondary structure of proteins by deconvolved FTIR spectra. Biopolymers. 1986 Mar;25(3):469–487. doi: 10.1002/bip.360250307. [DOI] [PubMed] [Google Scholar]
- Chirgadze Y. N., Fedorov O. V., Trushina N. P. Estimation of amino acid residue side-chain absorption in the infrared spectra of protein solutions in heavy water. Biopolymers. 1975 Apr;14(4):679–694. doi: 10.1002/bip.1975.360140402. [DOI] [PubMed] [Google Scholar]
- D'auria S., Barone R., Rossi M., Nucci R., Barone G., Fessas D., Bertoli E., Tanfani F. Effects of temperature and SDS on the structure of beta-glycosidase from the thermophilic archaeon Sulfolobus solfataricus. Biochem J. 1997 May 1;323(Pt 3):833–840. doi: 10.1042/bj3230833. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Daniel R. M., Dines M., Petach H. H. The denaturation and degradation of stable enzymes at high temperatures. Biochem J. 1996 Jul 1;317(Pt 1):1–11. doi: 10.1042/bj3170001. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Drueckes P., Boeck B., Palm D., Schinzel R. Mutational analysis of the oligosaccharide recognition site at the active site of Escherichia coli maltodextrin phosphorylase. Biochemistry. 1996 May 28;35(21):6727–6734. doi: 10.1021/bi951938l. [DOI] [PubMed] [Google Scholar]
- Eis C., Griessler R., Maier M., Weinhäusel A., Bock B., Kulbe K. D., Haltrich D., Schinzel R., Nidetzky B. Efficient downstream processing of maltodextrin phosphorylase from Escherichia coli and stabilization of the enzyme by immobilization onto hydroxyapatite. J Biotechnol. 1997 Dec 3;58(3):157–166. doi: 10.1016/s0168-1656(97)00145-4. [DOI] [PubMed] [Google Scholar]
- Fernandez-Ballester G., Castresana J., Arrondo J. L., Ferragut J. A., Gonzalez-Ros J. M. Protein stability and interaction of the nicotinic acetylcholine receptor with cholinergic ligands studied by Fourier-transform infrared spectroscopy. Biochem J. 1992 Dec 1;288(Pt 2):421–426. doi: 10.1042/bj2880421. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Herold M., Kirschner K. Reversible dissociation and unfolding of aspartate aminotransferase from Escherichia coli: characterization of a monomeric intermediate. Biochemistry. 1990 Feb 20;29(7):1907–1913. doi: 10.1021/bi00459a035. [DOI] [PubMed] [Google Scholar]
- Jackson M., Mantsch H. H. Beware of proteins in DMSO. Biochim Biophys Acta. 1991 Jun 24;1078(2):231–235. doi: 10.1016/0167-4838(91)90563-f. [DOI] [PubMed] [Google Scholar]
- Jackson M., Mantsch H. H. Halogenated alcohols as solvents for proteins: FTIR spectroscopic studies. Biochim Biophys Acta. 1992 Jan 9;1118(2):139–143. doi: 10.1016/0167-4838(92)90141-y. [DOI] [PubMed] [Google Scholar]
- Jensen W. A., Armstrong J. M., De Giorgio J., Hearn M. T. Stability studies on maize leaf phosphoenolpyruvate carboxylase: the effect of salts. Biochemistry. 1995 Jan 17;34(2):472–480. doi: 10.1021/bi00002a011. [DOI] [PubMed] [Google Scholar]
- Johnson L. N., Barford D. Electrostatic effects in the control of glycogen phosphorylase by phosphorylation. Protein Sci. 1994 Oct;3(10):1726–1730. doi: 10.1002/pro.5560031011. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Johnson L. N. Glycogen phosphorylase: control by phosphorylation and allosteric effectors. FASEB J. 1992 Mar;6(6):2274–2282. doi: 10.1096/fasebj.6.6.1544539. [DOI] [PubMed] [Google Scholar]
- Johnson L. N., Snape P., Martin J. L., Acharya K. R., Barford D., Oikonomakos N. G. Crystallographic binding studies on the allosteric inhibitor glucose-6-phosphate to T state glycogen phosphorylase b. J Mol Biol. 1993 Jul 5;232(1):253–267. doi: 10.1006/jmbi.1993.1380. [DOI] [PubMed] [Google Scholar]
- Lin K., Rath V. L., Dai S. C., Fletterick R. J., Hwang P. K. A protein phosphorylation switch at the conserved allosteric site in GP. Science. 1996 Sep 13;273(5281):1539–1542. doi: 10.1126/science.273.5281.1539. [DOI] [PubMed] [Google Scholar]
- Muga A., Arrondo J. L., Bellon T., Sancho J., Bernabeu C. Structural and functional studies on the interaction of sodium dodecyl sulfate with beta-galactosidase. Arch Biochem Biophys. 1993 Jan;300(1):451–457. doi: 10.1006/abbi.1993.1061. [DOI] [PubMed] [Google Scholar]
- Neet K. E., Timm D. E. Conformational stability of dimeric proteins: quantitative studies by equilibrium denaturation. Protein Sci. 1994 Dec;3(12):2167–2174. doi: 10.1002/pro.5560031202. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Nozais M., Béchet J. J., Houadjeto M. Inactivation, subunit dissociation, aggregation, and unfolding of myosin subfragment 1 during guanidine denaturation. Biochemistry. 1992 Feb 4;31(4):1210–1215. doi: 10.1021/bi00119a034. [DOI] [PubMed] [Google Scholar]
- O'Reilly M., Watson K. A., Johnson L. N. The crystal structure of the Escherichia coli maltodextrin phosphorylase-acarbose complex. Biochemistry. 1999 Apr 27;38(17):5337–5345. doi: 10.1021/bi9828573. [DOI] [PubMed] [Google Scholar]
- O'Reilly M., Watson K. A., Schinzel R., Palm D., Johnson L. N. Oligosaccharide substrate binding in Escherichia coli maltodextrin phosphorylase. Nat Struct Biol. 1997 May;4(5):405–412. doi: 10.1038/nsb0597-405. [DOI] [PubMed] [Google Scholar]
- Palm D., Goerl R., Weidinger G., Zeier R., Fischer B., Schinzel R. E. coli maltodextrin phosphorylase: primary structure and deletion mapping of the C-terminal site. Z Naturforsch C. 1987 Apr;42(4):394–400. doi: 10.1515/znc-1987-0411. [DOI] [PubMed] [Google Scholar]
- Paolini S., Tanfani F., Fini C., Bertoli E., Paolo Pelosi Porcine odorant-binding protein: structural stability and ligand affinities measured by fourier-transform infrared spectroscopy and fluorescence spectroscopy. Biochim Biophys Acta. 1999 Apr 12;1431(1):179–188. doi: 10.1016/s0167-4838(99)00037-0. [DOI] [PubMed] [Google Scholar]
- Pohl M., Grötzinger J., Wollmer A., Kula M. R. Reversible dissociation and unfolding of pyruvate decarboxylase from Zymomonas mobilis. Eur J Biochem. 1994 Sep 1;224(2):651–661. doi: 10.1111/j.1432-1033.1994.0651a.x. [DOI] [PubMed] [Google Scholar]
- Price N. C., Stevens E. The denaturation of rabbit muscle phosphorylase b by guanidinium chloride. Biochem J. 1983 Sep 1;213(3):595–602. doi: 10.1042/bj2130595. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Risse B., Stempfer G., Rudolph R., Möllering H., Jaenicke R. Stability and reconstitution of pyruvate oxidase from Lactobacillus plantarum: dissection of the stabilizing effects of coenzyme binding and subunit interaction. Protein Sci. 1992 Dec;1(12):1699–1709. doi: 10.1002/pro.5560011218. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Sacchetta P., Aceto A., Bucciarelli T., Dragani B., Santarone S., Allocati N., Di Ilio C. Multiphasic denaturation of glutathione transferase B1-1 by guanidinium chloride. Role of the dimeric structure on the flexibility of the active site. Eur J Biochem. 1993 Aug 1;215(3):741–745. doi: 10.1111/j.1432-1033.1993.tb18087.x. [DOI] [PubMed] [Google Scholar]
- Shaltiel S., Hedrick J. L., Pocker A., Fischer E. H. Reconstitution of apophosphorylase with pyridoxal 5'-phosphate analogs. Biochemistry. 1969 Dec;8(12):5189–5196. doi: 10.1021/bi00840a073. [DOI] [PubMed] [Google Scholar]
- Shimomura S., Emman K., Fukui T. The role of pyridoxal 5'-phosphate in plant phosphorylase. J Biochem. 1980 Apr;87(4):1043–1052. [PubMed] [Google Scholar]
- Sprang S. R., Acharya K. R., Goldsmith E. J., Stuart D. I., Varvill K., Fletterick R. J., Madsen N. B., Johnson L. N. Structural changes in glycogen phosphorylase induced by phosphorylation. Nature. 1988 Nov 17;336(6196):215–221. doi: 10.1038/336215a0. [DOI] [PubMed] [Google Scholar]
- Tomizawa H., Yamada H., Wada K., Imoto T. Stabilization of lysozyme against irreversible inactivation by suppression of chemical reactions. J Biochem. 1995 Mar;117(3):635–640. doi: 10.1093/oxfordjournals.jbchem.a124756. [DOI] [PubMed] [Google Scholar]
- WADA H., SNELL E. E. The enzymatic oxidation of pyridoxine and pyridoxamine phosphates. J Biol Chem. 1961 Jul;236:2089–2095. [PubMed] [Google Scholar]
- Watson K. A., McCleverty C., Geremia S., Cottaz S., Driguez H., Johnson L. N. Phosphorylase recognition and phosphorolysis of its oligosaccharide substrate: answers to a long outstanding question. EMBO J. 1999 Sep 1;18(17):4619–4632. doi: 10.1093/emboj/18.17.4619. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Watson K. A., Schinzel R., Palm D., Johnson L. N. The crystal structure of Escherichia coli maltodextrin phosphorylase provides an explanation for the activity without control in this basic archetype of a phosphorylase. EMBO J. 1997 Jan 2;16(1):1–14. doi: 10.1093/emboj/16.1.1. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Weinhäusel A., Griessler R., Krebs A., Zipper P., Haltrich D., Kulbe K. D., Nidetzky B. alpha-1,4-D-glucan phosphorylase of gram-positive Corynebacterium callunae: isolation, biochemical properties and molecular shape of the enzyme from solution X-ray scattering. Biochem J. 1997 Sep 15;326(Pt 3):773–783. doi: 10.1042/bj3260773. [DOI] [PMC free article] [PubMed] [Google Scholar]
