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PLOS One logoLink to PLOS One
. 2025 Jul 1;20(7):e0326858. doi: 10.1371/journal.pone.0326858

Ficus benghalensis extract mediated green synthesis of silver nanoparticles, its optimization, characterization, computational studies, and its in vitro and in vivo biological potential

Inam Ud Din 1, Rahaf Ajaj 2,*, Abdur Rauf 3,*, Zubair Ahmad 3, Naveed Muhammad 4, Shahid Ali 1, Hassan A Hemeg 5, Imran Ullah 6
Editor: Rajesh Kumar Singh7
PMCID: PMC12212521  PMID: 40591582

Abstract

In this work, Silver (Ag) nanoparticles (NPs) were synthesized via green synthesis using Ficus benghalensis root extract (FBRE), serving as a capping and stabilizing agent. The synthesized Ag NPs were characterized via complementary characterization techniques, including SEM, XRD, EDS, UV-Vis, and FT-IR. SEM analysis revealed the fabrication of spherical NPs with an average size of 41.55 nm. A plasmon resonance peak was observed at 430 nm. FBRE effectively capped and stabilized the Ag NPs, ensuring their structural integrity over time, and is confirmed via FT-IR scan. DFT calculation revealed a thermodynamically and mechanically stable system. Moreover, optoelectronic properties confirmed the metallic behavior of Ag with a major contribution from 4d orbital near the fermi level and 5s orbital contribution to the conduction band with light absorption in the visible spectrum. Biological evaluations demonstrated significant enzyme inhibition. Ag NPs inhibited urease (80.76%), α-glucosidase (80.98%), carbonic anhydrase II (89.32%), and xanthine oxidase (49.9%), outperforming FBRE. In Vivo, Ag NPs exhibited dose-dependent analgesic (83.09% writhing inhibition at 10 mg/kg, similar to diclofenac) and sedative (16.09% locomotor reduction at 10 mg/kg) effects. Molecular docking confirmed strong enzyme-ligand interactions. These findings highlight the biomedical potential of FBRE-synthesized Ag NPs, particularly for enzyme inhibition and pharmacological applications.

1. Introduction

Metallic nanoparticles (NPs) have remained a prominent field of study for decades, and they have unique properties due to their higher surface-to-volume ratio compared to bulk materials. Versatile properties of NPs have extensive applications in optics, electronics, and medicine, especially in drug delivery systems [14]. NPs have been extensively studied for various applications so far. Among metallic NPs, noble metal NPs, including gold (Au) and Ag NPs, are highly regarded in nanoscience due to their biocompatibility and minimal toxicity to human health. Ag NPs can be synthesized through various routes, including chemical, physical, and green synthesis. Post synthesis, the key concerns are biocompatibility, toxicity, and an environmentally friendly synthesis approach. Green synthesis approaches for NPs synthesis have gained attention as sustainable alternatives that involve enzymes, microorganisms, and plant extracts (roots, stems, leaves, etc.) [5]. Green synthesis of AgNPs has emerged as a sustainable and eco-friendly alternative to conventional chemical and physical synthesis methods. Traditional approaches often rely on toxic reducing agents such as sodium borohydride and organic solvents, which pose environmental hazards and limit biomedical applications due to potential cytotoxicity. In contrast, green synthesis utilizes plant extracts, microorganisms, or biomolecules as reducing and stabilizing agents, offering a cost-effective, non-toxic, and biodegradable route. Additionally, the bioactive compounds present in plant extracts not only aid in nanoparticle stabilization but also enhance their therapeutic potential, making them suitable for biomedical and pharmaceutical applications. Compared to high-energy-consuming physical methods like laser ablation or microwave-assisted synthesis, green synthesis is energy-efficient and operates under ambient conditions, reducing environmental impact [6,7]. Plant-extract-mediated green synthesis has gained attention due to its eco-friendly nature that utilizes various parts of plants as a natural reducing and capping agent [8,9]. Such decorated NPs not only minimize toxicity but also support the advancement of green chemistry. Moreover, green synthesis is cost-effective, resource-efficient, and time-saving compared to conventional methods [1015]. Capping agents, including citrate molecules (Cit), 1,5-diphenyl-1,3,5-pentanetrione (Pent), and dimethyl-L-tartrate (DMLT), retain the structural integrity of pristine and doped metal oxides and peroxides for more than one month [1618]. Similarly, several phytochemicals in plant extracts act as capping agents to control NP growth. The choice of plants depends on various factors, including availability, history, economical, and bio-compatibility. The use of medicinal plants, plants which have been practiced for centuries for various kinds of treatments, is attributed to enhancing the therapeutic potential of plant extract decorated NPs [19].

The increasing microbial resistance to antibiotics has driven research toward investigating alternative sources for treating resistant strains [20,21]. Approximately 80% of the world’s population relies on plant-derived medicines as a first line of defense in maintaining health and combating disease. Thousands of plants currently serve as remedies for various ailments. The biomolecules in the extract, including antioxidants, effectively reduce metal ions to their NPs counterparts and stabilize them by preventing aggregation [2224]. Lots of medicinal antiviral enzymes inhibitory and antibacterial as been studied for their biological activities [25,26].

Medicinal plants have great medicinal value and the Ficus benghalensis (Banyan tree) is one of them. It is a well-known medicinal plant in Khyber Pakhtunkhwa (KPK), Pakistan, and is locally utilized for alleviating conditions such as pain, fever, inflammation, insomnia, diabetes, wound healing, and for its antioxidant and antimicrobial properties [27]. Singh, Dhankhar et al (2023) investigated the antimicrobial activity and phytochemical composition of Ficus benghalensis leaf and fruit extracts, demonstrating the presence of bioactive compounds such as lupeol, beta amyrone, and vitamin E, which contribute to its therapeutic potential against bacterial and fungal infections [28]. In another study, Torane et al. (2020) evaluated the antimicrobial and antifungal potential of Ficus benghalensis aerial part extracts prepared under different temperature conditions, confirming significant activity against bacterial strains such as Staphylococcus aureus and Escherichia coli, as well as fungal strains like Candida albicans and Aspergillus niger [29]. Similarly, Murugesu et al. (2021) comprehensively reviewed the phytochemical profile and pharmacological properties of Ficus benghalensis and Ficus religiosa, highlighting their diverse bioactive compounds such as flavonoids, alkaloids, and terpenoids. The study also emphasized their broad-spectrum biological activities, including antioxidant, anticancer, antimicrobial, and wound healing properties, along with recent applications in nanotechnology [27]. Due to this diverse array of phytochemicals and biological activities, the Ficus bengalinsis is a suitable codidate of the synthesis of Fe NPs. Moreover, Its rapid growth, renewable biomass, and bioactive phytochemicals contribute to an eco-friendly approach to nanoparticle synthesis, reducing the reliance on hazardous chemicals. Utilizing plant-based synthesis not only minimizes environmental toxicity but also aligns with sustainable development goals by promoting biodegradable and non-toxic alternatives for biomedical and environmental applications. Silver, a noble metal with well-known antimicrobial and antifungal properties, has been utilized since ancient times. The potential of Ag NPs increases significantly at the nanoscale and has been explored over the past decade in various fields, including medical imaging, targeted drug delivery, and enzyme inhibition. The most important effect is the surface plasmon resonance (SPR) effect, which makes Ag NPs particularly valuable in biomedical applications [3033]. Enzymes, which act as biological catalysts, facilitate various biochemical reactions. Their inhibitors can treat several neurological disorders, including those without proper treatment, such as acetylcholinesterase, tyrosinase, xanthine oxidase, alkaline phosphatase, and glucosidase. However, enzymes can be inhibited by pesticides or toxic substances, which disrupt normal physiological functions and cause severe side effects. Therefore, reliable methods to detect enzymatic inhibitors are essential, considering their potential correlation with medical conditions like gout, melanin hyperpigmentation, and Alzheimer’s disease [3438]. The effectiveness of pharmaceutical compounds is linked to their impact on enzymatic activity [39]. Specific toxins, including extracts and NPs, can irreversibly inhibit enzymes, affecting biological processes and health. Metallic NPs can interact with enzymes, disrupting functional groups or active sites, and reducing catalytic function. Understanding these molecular interactions is crucial for precision diagnostics and understanding NPs interactions in various scientific domains [4042]. Silver crystallizes in a face-centered cubic (FCC) with space group Fm-3m, where each Ag atom is bounded to 12 nearest neighbors in an octahedral arrangement. The arrangement forms a mixture of edge, face and corner-sharing octahedra. High electrical and thermal conductivity, malleability, and reflectivity are inherited due to silver’s metallic bonding and dense atomic packing. These properties make it ideal in electronics, jewelry, and catalysts. Additionally, its FCC structure provides low thermal expansion [43].

Despite the promising potential of green-synthesized silver nanoparticles, certain limitations and challenges remain. The variability in plant extract composition due to environmental factors can lead to inconsistencies in nanoparticle synthesis and bioactivity. Additionally, the precise mechanisms governing the interaction of biomolecules with silver ions during synthesis are not yet fully elucidated. Challenges also exist in scaling up the green synthesis process for industrial applications while maintaining reproducibility and stability. Further studies are needed to optimize synthesis conditions, ensure long-term stability, and assess potential cytotoxicity for safe biomedical applications. Addressing these challenges will help advance the practical applications of green-synthesized AgNPs in diverse fields.

Although extensive research has been conducted on the biomedical applications of metallic nanoparticles, there remains a critical gap in understanding the molecular mechanisms underlying their enzyme-inhibitory activity. Most studies focus on the synthesis and basic biological evaluations of Ag NPs, but the detailed molecular interactions between these nanoparticles and target enzymes remain unexplored. The lack of molecular docking studies to elucidate the binding affinity, and active site interactions, induced by Ag NPs limits our understanding of their mechanistic action. Additionally, the role of functional biomolecules from Ficus benghalensis in stabilizing Ag NPs and enhancing their bioactivity at the molecular level is not well established. This study addresses these gaps by utilizing molecular docking analysis to predict the interaction of Ag NPs with key metabolic enzymes, such as urease, α-glucosidase, carbonic anhydrase II, and xanthine oxidase. By investigating binding energies and hydrogen bonding interactions, this study provides mechanistic insights into the therapeutic potential of green-synthesized Ag NPs. Furthermore, In Vivo pharmacological assessments complement the computational findings, offering a comprehensive evaluation of their biomedical relevance. The findings highlight the promising biomedical applications of Ficus benghalensis root extracts (FBRE) and Ag NPs as novel enzyme inhibitors. These findings opened the way for targeted therapeutic interventions and demonstrated significant analgesic and sedative effects, underscoring the potential of these compounds for future drug development. Furthermore, this suggests that FBR extract and Ag NPs could be valuable in developing new treatments for various conditions.

2. Materials and methods

2.1. Ethics

The animal study results were obtained according to guidelines, regulations, and institutional policies. The animals were stored under standard laboratory conditions. The animal study was approved by the ethical committee of the Department of Pharmacy, Abdul Wali Khan University Mardan, with Ref. No of EC/DOP/12. All the selected animals were properly acclimatized with laboratory conditions. After suitable acclimatization, each animal was treated with the approved route of administration. Once the experiment was completed, animals were killed with cervical dislocation, following approved ethical guidelines.

2.2. Plant collection and extraction

Ficus benghalensis was collected from Peshawar, Pakistan, and identified by Mr. Saifullah, a taxonomist at Government Degree College Lahore Swabi. The root material was dried at room temperature for 7 days, ground, and extracted using a water-methanol solvent system for 4 days. After filtration, the extract was concentrated via rotary evaporation and further dried using a water bath at 50°C to yield a solvent-free, bioactive-rich extract for subsequent use.

2.3. Synthesis of nanoparticles

Ag NPs were synthesized via a green method using Ficus Benghalensis root extract (FBRE). A 1 mM silver nitrate (AgNO3) the solution was prepared by 42.46 mg of silver AgNO3 in 250 mL of di-ionized water (DIW). FBRE was prepared by dissolving 0.1 g of the methanolic extract powder in 100 mL of methanol and diluting it to 500 mL with DIW. The extract was then filtered. The reaction mixture was optimized by testing different salt-to-extract ratios (1:1, 1:2, 1:4, 1:6, 1:8, 1:10) under continuous stirring. A color change from the initial solution to yellowish-brown, observed at a 1:8 ratio, served as a preliminary indication of Ag NPs formation. To separate the NPs, the reaction mixture was centrifuged at 3000 rpm for 40 minutes, followed by washing with double-distilled water and vacuum drying. Confirmation of Ag NPs synthesis was achieved through UV-Vis spectroscopy.

2.4. Instrumentations

The synthesized Ag NPs were thoroughly characterized using various techniques at the Material Research Laboratory (MRL), Department of Physics, University of Peshawar. Scanning Electron Microscopy (SEM) with National Center of Excellence in Geology, University of Peshwar (NCEG-UOP) facilitated the visualization of the NPs’ surface morphology and topography. Functional groups potentially attached to the NPss were identified using Fourier Transform Infrared Spectroscopy (FTIR). UV-Vis spectroscopy was employed to determine the absorption, while Photoluminescence (PL) spectroscopy investigated the luminescent properties of the Ag NPs. Notably, the observed Surface Plasmon Resonance (SPR) effect in the UV-Vis spectrum further supported the spherical morphology of the synthesized Ag NPs.

2.5. Computational studies

Using the Spanish Initiative for Electronic Simulations with Thousands of Atoms (SIESTA), density functional theory (DFT) calculations were carried out for the Ag (2x2x1) layer’s structural, thermodynamic, mechanical, optoelectronic, and optical properties. We used the Perdew-Burke-Ernzerhof (PBE) in conjunction with the generalized gradient approximation (GGA) to account for the exchange-correlation effects. The interaction between the valence electron and the core was described using Troullier-Martins pseudopotentials that conserve norms. From the material project database, an Ag crystallographic information file (cif) was acquired. The unit cell was extended along the x- and y-axes (2x2x1) to form a supercell with a 10 Å vacuum along c-axis to avoid any contact between periodic images in that direction. In the supercell, 24 Ag atoms were found. Fig 1 illustrates the relaxed geometry of such a system with bond length before and after optimization, yielding values of 2.9 Å and 2.96 Å. Before calculations, a convergence test was performed using the mesh cut-off (Ry), kpoint grid, and lattice constant (Å). The overall energy convergence criteria were set at 10−6 eV, and geometry modifications were made until the stresses on each atom were less than 0.01 eV/Å. The atomic orbits were described using the double-zeta polarized (DZP) basis set. To guarantee that the charge density and potentials were integrated with the appropriate degree of accuracy, a mesh cut-off energy of 350 Ry was applied to the real-space grid. To ascertain mechanical stability (various models are fitted to the volume vs. total energy data) and optoelectronic properties (density of states, projected density of states, band structures, and optical properties were examined), cohesive energy (eV/atom) and enthalpy of formation (eV/atom) were calculated for an Ag system. Similarly, the molecular docking was also performed to investigate the binding interaction of Ag NPs with the targeted enzymes, including carbonic anhydrase II (CA-II), urease, xanthine oxidase, and α-glucosidase, which were assessed via AutoDock Vina. The selected enzymes were downloaded from the protein data bank. At the first step, water molecules and ligands were removed, followed by adding polar hydrogen and Kollman charges. The molecular docking studies signify a strong interaction of Ag NPs with the targeted enzymes.

Fig 1. Layer structure of silver before (a) and after optimization (b).

Fig 1

2.6. In vitro biological screening

2.6.1. Urease inhibition assay.

The urease inhibition assay was performed using the modified Berthelot method, which quantifies ammonia production from the hydrolysis of urea. In a 96-well microplate, 10 μL of the synthesized Ag NPs (0.2 µg) or Ficus benghalensis root extract (FBRE, 0.2 µg) was mixed with 25 μL of Jack bean urease enzyme solution (1 U/mL) and 40 μL of phosphate buffer (pH 7.4). After a 15 min pre-incubation at 37°C, 40 μL of urea (100 mM) was added as the substrate, and the reaction was incubated for 30 minutes. Thiourea (0.2 µM) was used as the standard urease inhibitor. The ammonia produced was quantified by adding 40 μL each of phenol reagent (1% phenol, 0.005% sodium nitroprusside) and hypochlorite reagent. Absorbance was measured at 630 nm, and the inhibition percentage was calculated relative to the control [44].

2.6.2. α-Glucosidase inhibition assay.

The α-glucosidase inhibition activity was assessed to determine the efficacy of the synthesized Ag NPs (0.2 µg) and FBRE (0.2 µg) in inhibiting enzyme activity. Each sample (10 μL) was pre-incubated with 25 μL of α-glucosidase enzyme solution (0.1 U/mL) in a 96-well plate for 15 minutes at 37°C. p-Nitrophenyl-α-D-glucopyranoside (PNPG, 1 mM) was added as the substrate, and the reaction was allowed to proceed for 30 min. The reaction was stopped by adding 40 μL of sodium carbonate solution (100 mM), and absorbance was measured at 405 nm to determine the release of p-nitrophenol. Acarbose (0.2 µM) was used as the standard α-glucosidase inhibitor, with inhibition percentage calculated against the control [45].

2.6.3. Carbonic Anhydrase II (CA-II) inhibition assessment.

The CA-II inhibition assay was conducted using a colorimetric method to measure the inhibition of CA-II by the synthesized Ag NPs (0.2 µg) and FBRE (0.2 µg). A reaction mixture containing 10 μL of sample and 25 μL of CA-II enzyme solution (0.2 U/mL) was pre-incubated in a 96-well plate for 15 minutes at 37°C. The reaction was initiated by adding 40 μL of p-nitrophenyl acetate (1 mM) as the substrate and allowed to proceed for 30 min. Absorbance was recorded at 405 nm to monitor the production of p-nitrophenol. Acetazolamide (0.2 µM) was used as the standard CA-II inhibitor, with inhibition percentage calculated relative to the control [46].

2.6.4. Xanthine oxidase (XO) inhibition assay.

The xanthine oxidase inhibition assay evaluated the ability of the synthesized Ag NPs (0.2 µg) and FBRE (0.2 µg) to inhibit xanthine oxidase. In a 96-well plate, 10 μL of each sample was combined with 40 μL of xanthine oxidase enzyme solution (0.1 U/mL) and 50 μL of phosphate buffer (pH 7.5). After a 10 min pre-incubation at 25°C, 50 μL of xanthine (100 μM) was added as the substrate. The reaction was incubated for 30 minutes, and absorbance was measured at 290 nm to quantify uric acid production. Allopurinol (0.2 µM) was used as the standard XO inhibitor, and inhibition percentage was calculated in relation to the control [44].

2.7. In vivo activities

2.7.1. Analgesic activity.

The analgesic potential was evaluated by acetic acid-induced writhing model. In this procedure animals were classified as the negative control group which was administered with distilled water (10 ml/kg), the positive control group was treated with diclofenac (10 mg/kg) and the tested groups were administered with extract (15, 25, 50 and 100 mg/kg) and Ag NPs (2.5, 5 and 10 mg/kg). After 30 min post-treatment, each animal was injected with 1% acetic acid solution (IP). After 10 min of acetic acid treatment, each animal was observed individually for abdominal constrictions (writhes) for 5 min. the percent analgesic effect was calculated using the following formula [44].

 analgesic activity   =100Number of  writhings in tested animalsNumber of writings in control animals×100

2.7.2. Sedative activity.

The samples were tested for sedative effect in an open field in-vivo model. This experiment was conducted following our published procedure with modifications. The animals were classified as above, and the positive control group was injected with diazepam (0.5 mg/kg). The same doses for both samples were used. A special wooden box was used. The bottom board of the box was lined with equal spaces. After 30 min of the treatment with distilled water, diazepam, and extract/ NPs the animal was placed at the center of the box and the number of lines crossed was counted for 10 min [47].

3. Results

3.1. Structural, thermal and mechanical properties

The thermodynamic and mechanical stability of the simulated Ag 2x2x1 layer with 10 Å vacuum in the c-direction were measured using cohesive energy (eV/atom), enthalpy formation (eV/atom), and Murnaghan, Birch-Murnaghan, Birch, and Vinet models. Cohesive energy is defined, as the energy required to disassemble the material into individual atoms, and enthalpy formation reflects the change energy to form a compound from its constituent elements. The calculation shows, cohesive energy of −2.520 eV/atom and enthalpy formation of −0.678 eV/atom, summarized in Table 1. The results indicate a stable configuration and suggest that the system has strong interatomic bonds. To look into the response of Ag Nps to compressive deformation, we fitted various kinds of models to the relative energy vs. Volume data, shown in Fig 2. The Murnaghan, Birch-Murnaghan, Birch, and Vinet models resulted in equilibrium energy (E0 (eV)), a bulk modulus, a pressure derivative of the bulk modulus, and equilibrium volume with value of −23621.612 eV, −23621.911 eV, −23621.911 eV and −23622.002 eV, 54.39 Gpa, 63.03 Gpa, 63.03 Gpa, and 65.54 Gpa, 5.36, 5.63, 5.63, and 5.67, 537.61 ų, 533.42 ų, 533.42 Å3, and 532.74 ų respectively as shown in the inset of Table 1. The relatively high bulk modulus across all models confirms the mechanical robustness of the simulated Ag layers. The small differences between the fitted models also highlight that the NPs structure remains consistent and stable under different theoretical frameworks, with the Vinet model suggesting the least compressibility.

Table 1. Cohesive energy and enthalpy formation of silver layer.

Material Total Energy (eV) Energy of Silver atom Energy of Silver atom in bulk Cohesive Energy (eV/atom) Ethalpy Formation (eV/atom)
Silver (Ag) 2x2x1 layer −23621.913 −981.726 −983.568 −2.520 −0.678

Fig 2. Various Equation of state fit to the volume vs. relative energy of Ag 221 layer.

Fig 2

3.2. Optoelectronic properties

The total density of states (TDOS), the projected density of states (PDOS), the band plot, and optical properties were calculated for Ag (2x2x1) supercell. The total density of states confirmed the metallic behavior of Ag with a significant peak around −4 eV, attributed to the Ag-4d orbital, which is the main contributor to the DOS near the Fermi level (Ef). The Ag-5s states have a contribution to the conduction band. The analysis provides insights into the electronic structure of Ag. Such results play an important role in understanding the conductive properties. The same behavior is shown in the band plot. The optical properties show sufficient absorption in the visible spectrum, as shown in the panel of absorption coefficient vs. energy. In the conductivity vs. energy plot, a significant peak at lower energies, signifying a high conductive response near the Fermi level. These optical characteristics are consistent with the known behavior of silver, and such analyses provide valuable insights into the electronic structure and the optoelectronic properties of metallic thin films. The results are shown in Fig 3ac.

Fig 3. Total density of States, Projected density of States (a), Band (b) and optical properties (c) of Ag 221 layer.

Fig 3

3.3. UV-Vis spectroscopy and surface plasmon resonance (SPR) of Ag NPs

Silver NPs exhibit a fascinating property known as the Surface Plasmon Resonance (SPR) effect. This phenomenon occurs when light interacts with the free electrons on the Ag NPs surface. The specific wavelength of light excites these electrons, causing a collective oscillation and leading to the absorption and subsequent re-emission of light. Notably, the absorption peak is highly dependent on the size and shape of the NPs. In this study, the UV-Vis spectrum (Fig 4) revealed a broad absorption peak at around 430 nm, which is a characteristic signature of the SPR effect in spherical Ag NPs. This observation not only confirms the presence of Ag NPs but also strongly supports their spherical morphology. The observed behavior aligns with the established relationship between the SPR peak and NPs shape.

Fig 4. UV-visible spectra (a), and surface plasmon resonance of Ag NPs (b).

Fig 4

3.4. FTIR spectroscopy

FTIR analysis (Fig 5) revealed the functional groups present in Ficus Benghalensis root extract (FBRE) which reduced and caped the synthesized Ag NPs, recorded in the range of 500−4000 cm-1. The FBRE spectrum exhibited peaks indicative of CO stretching in carbohydrates (887 cm-1, 1027 cm-1, 1067 cm-1) and aromatic compounds (1222 cm-1, 1621 cm-1), alongside CH stretching in alkanes and lipids (2940 cm-1, 2981 cm-1), and OH stretching in alcohols/water (3362 cm-1). The Ag NPs spectrum displayed similar CO vibrations (1045 cm-1, 1115 cm-1), but also showcased CN stretching (1268 cm-1), CH bending (1394 cm-1, 1588 cm-1), carbon-carbon triple bond stretching (2167 cm-1), and CH stretching in proteins (2851 cm-1, 2927 cm-1), and OH stretching (3248 cm-1).The presence of overlapping functional groups in both spectra suggests their involvement in Ag NPs synthesis and stabilization. However, peak shifts in the Ag NPs spectrum compared to FBRE indicate an interaction between the plant extract and silver ions. Notably, peaks at 1394 cm-1, 1588 cm-1, and 1621 cm-1 present in both samples suggest aromatic compounds, potentially playing a role in Ag NPs reduction and capping. These findings support the role of FBRE biomolecules in Ag NPs synthesis and stabilization.

Fig 5. FT-IR spectra of FBRE (a) and Ag NPs (b).

Fig 5

3.5. Scanning electron microscopy (SEM)

SEM analysis (JSM-IT100, National Centre of Excellence in Geology, University of Peshawar (NCEG, UoP)) revealed a slight size distribution of spherical Ag NPs synthesized using Ficus Benghalensis root extract. The SEM images of single and cluster of Ag NPs as shown in Fig 6a,b. The average diameter particle 41.55 nm size, determined using ImageJ and plotted in Origin Lab Fig 6c, was, with most particles falling within the 20–55 nm range. Particles exhibit a uniform spherical shape, both single and clusters are observed, indicating controlled synthesis. The cluster suggests partical-partical interactions. Surface morphology influences optical and biological properties The observed size distribution and spherical shape suggest the plant extract acted as a capping agent, potentially interacting with the Ag NPs to control aggregation. These findings from SEM analysis confirm the successful green synthesis of Ag NPs with promising characteristics for further exploration.

Fig 6. SEM images of single and cluster of Ag NPs with low (a), high (b) resolutions and size distribution curve (c).

Fig 6

3.6. Energy dispersive X-ray spectroscopy

Energy-dispersive X-ray Spectroscopy (EDX) analysis (Fig 7) confirmed the elemental composition of the green-synthesized Ag NPs derived from Ficus Benghalensis Root (FBR) extract. The EDX spectrum revealed distinct peaks for silver (Ag), oxygen (O), potassium (K), and surprisingly, chlorine (Cl). While the presence of Ag confirms the purity of NPs, the other elements suggest the involvement of organic compounds. These likely originate from biomolecules in the FBR extract, particularly polyphenols and other carbon-containing molecules. Notably, the EDX analysis provides valuable information about the elemental composition near the surface of the Ag NPs, offering insights into potential interactions between the NPs and the biomolecules during synthesis.

Fig 7. EDX spectrum of synthesized Ag NPs.

Fig 7

3.7. Pharmacological application

3.7.1. Urease inhibition.

The effect of FBRE and Ag NPs on urease is demonstrated in Table 2. FBRE (0.2 µg) and Ag NPs (0.2 µg) showed 57.98% and 80.76% inhibitory effects, respectively, with IC₅₀ values of 44.87 ± 1.11 µM and 35.76 ± 1.20 µM. Thiourea used as a standard drug, exhibited a 98.93% inhibitory effect with an IC₅₀ value of 21.38 ± 0.82 µM.

Table 2. Enzyme inhibitory potential of FBRE and Ag NPs.
Enzyme Sample Conc. % inhibition IC50
Urease FBE 0.2 µg 57.98 44.87 ± 1.11
Ag NPs 0.2 µg 80.76 35.76 ± 1.20
Thiourea 0.2 µM 98.93 21.38 ± 0.82
α-glucosidase FBE 0.2 µg 37.09
Ag NPs 0.2 µg 80.98 90.65 ± 1.54
Acarbose 0.2 µM 98.54 28.98 ± 1.00
Carbonic anhydrase II FBE 0.2 µg 70.43 0.24 ± 0.54
Ag NPs 0.2 µg 89.32 0.19 ± 0.03
Acetazolamide 0.2 µM 92.33 0.15 ± 0.04
Xanthine Oxidase FBE 0.2 µg 30.55
Ag NPs 0.2 µg 49.90
Allopurinol 0.2 µM 98.54 2.65 ± 0.04

3.7.2. Effect on α-glucosidase activity.

Both of the tested samples showed a variable degree of α-glucosidase inhibitory effect (Table 2); however, the effect of Ag NPs was more significant than FBRE. The percent inhibitory action of FBRE (0.2 µg) and Ag NPs (0.2 µg) was 37.09% and 80.98%, respectively. The IC₅₀ value of Ag NPs was 90.65 ± 1.54 µM, while the standard inhibitor, acarbose, showed 98.54% inhibition with an IC₅₀ value of 28.98 ± 1.00 µM.

3.7.3. Effect on carbonic anhydrase II (CA-II).

The extract and Ag NPs significantly inhibited CA-II activity. FBRE (0.2 µg) exhibited a 70.43% inhibitory effect with an IC₅₀ value of 0.24 ± 0.54 µM, whereas Ag NPs (0.2 µg) showed a higher inhibition of 89.32% with an IC₅₀ value of 0.19 ± 0.03 µM. Acetazolamide, the standard inhibitor, showed 92.33% inhibition with an IC₅₀ value of 0.15 ± 0.04 µM (Table 2).

3.7.4. Effect on xanthine oxidase (XO).

The effect of FBRE and Ag NPs on XO activity is shown in Table 2. FBRE (0.2 µg) exhibited a 30.55% inhibitory effect, while Ag NPs (0.2 µg) showed a 49.90% inhibitory effect. Allopurinol, the standard inhibitor, demonstrated 98.54% inhibition with an IC₅₀ value of 2.65 ± 0.04 µM.

3.7.5. Analgesic activity.

The analgesic potential was evaluated using the acetic acid-induced writhing model as shown in Table 3. FBRE exhibited dose-dependent inhibition, with values of 32.76% (15 mg/kg), 40.98% (25 mg/kg), 61.19% (50 mg/kg), and 68.09% (100 mg/kg). Ag NPs also showed significant dose-dependent inhibition, achieving 72.98% (2.5 mg/kg), 78.23% (5 mg/kg), and 83.09% (10 mg/kg). Diclofenac sodium (10 mg/kg), used as a positive control, demonstrated 84.01% inhibition.

Table 3. Analgesic potential of extract and its synthesized NPs from Ficus benghalensis.
Treatment Dose (i.p) % Inhibition of writhing
Saline 10 mL/kg
Diclofenac Sodium 10 mg/kg 84.01 ± 0.82***
FBE 15 mg/kg 32.76 ± 2.01
25 mg/kg 40.98 ± 1.87*
50 mg/kg 61.19 ± 1.90*
100 mg/kg 68.09 ± 1.87**
Ag NPs 2.5 mg/kg 72.98 ± 1.23**
5 mg/kg 78.23 ± 1.40***
10 mg/kg 83.09 ± 1.65***

*p < 0.05; **p < 0.01; ***p < 0.001

3.8. Sedative activity

FBRE showed dose-dependent activity with reductions in movement of 60.16% (15 mg/kg), 52.09% (25 mg/kg), 43.32% (50 mg/kg), and 36.66% (100 mg/kg). Ag NPs also showed a dose-dependent reduction in movement, with values of 34.65% (2.5 mg/kg), 25.44% (5 mg/kg), and 16.09% (10 mg/kg). Diazepam (0.5 mg/kg), the positive control, exhibited 8.60% inhibition (Table 4).

Table 4. Sedative potential of extract and its synthesized NPs from Ficus benghalensis.

Treatment Dose (i.p) % Inhibition of writhing
Saline 10 mL/kg
Diazepam 0.5 mg/kg 8.60 ± 0.88***
FBE 15 mg/kg 60.16 ± 2.34
25 mg/kg 52.09 ± 1.09*
50 mg/kg 43.32 ± 1.66*
100 mg/kg 36.66 ± 1.90**
Ag NPs 2.5 mg/kg 34.65 ± 1.55**
5 mg/kg 25.44 ± 1.34***
10 mg/kg 16.091.09***

*p < 0.05; **p < 0.01; ***p < 0.001

3.9. Molecular docking

Docking analysis suggests robust and long-lasting interactions, including hydrogen bonding, hydrophobic interaction, electrostatic interaction and π-π stacking. The functional groups that capped and stabilized Ag NPs also facilitated interactions with the target enzymes, including carbonic anhydrase II, urease, xanthine oxidase, and α-glucosidase, through various bonds. Based on the FTIR spectra, the functional groups present on the surface of NPs can interact with the enzymes, contributing to the observed activities. Functional groups such as C-O and C-H interacted with residues like ARG27, PHE131, GLY132, and LYS133 in carbonic anhydrase II through hydrogen bonding and van der Waals interactions, stabilizing the NPs-enzyme complex and potentially disrupting enzymatic activity (Fig 8a). In the case of urease, O-H and C-N functional groups formed hydrogen bonds with active site residues such as HIS409, TYR410, and GLN414, while aromatic compounds interacted with residues like LEU415 and ARG439 via π-π stacking, suggesting competitive or non-competitive inhibition of the enzyme (Fig 8b). Similarly, the aromatic and hydroxyl groups formed hydrogen bonds and hydrophobic interactions with residues such as ARG381, THR396, HIS614, and ALA615 in xanthine oxidase, likely interfering with the enzyme’s active site and reducing its catalytic efficiency (Fig 8c). For α-glucosidase, the hydroxyl and carbonyl groups formed hydrogen bonds with residues like TYR14, ILE16, and ASP23, while aromatic compounds interacted with PHE21 and LEU22, demonstrating strong binding affinity and contributing to enzyme inhibition (Fig 8d). These findings suggest that the functional groups from FBRE not only mediated the synthesis and stabilization of Ag NPs but also enhanced their interactions with enzymes, leading to potential inhibitory effects on enzymatic activity. This dual role of biomolecules from FBRE highlights their significance in both nanoparticle synthesis and biological applications.

Fig 8. Molecular docking of Carbonic anhydrase-II Enzyme (a), Urease Enzyme (b), Xanthine oxidase Enzyme, and α-glucosidase Enzyme.

Fig 8

4. Discussion

The Ag NPs were synthesized using a green synthesis approach. The extract served as a capping and stabilizing agent, ensuring the chemical and physical stability of the nanoparticles and preventing their degradation. Currently, there are several chemical and physical techniques used for the synthesis of Ag NPs [11]. However, green synthesis of Ag NPs is a very simple and eco-friendly synthetic route for the synthesis of Ag NPs. These green synthesis techniques aim to address the biocompatible good capping agent providing extract of plant and sustainability concerns associated with conventional synthesis approaches [48,49]. In this regard, Ficus Benghalensis root extract FBRE proves a very important biological substrate in the right direction for the green synthesis of Ag NPs [50]. The SPR study and SEM images confirm that Ag NPs spherical in shape and equally distributed. The SPR absorption band it 430 nm strongly observed. The SEM images show that the synthesized Ag NPs are spherical. The particles are not dispersed but seem agglomerated due to the presence of some biomolecules that provide a capping and stabilizing agent to Ag NPs. The biomolecules present in the extract of plants are responsible extraction of Ag NPs. In the present research study, the particle size of Ag NPs was found in different ranges but the average range of 41.55nm. The surface morphology of the particle formed consists of Ag NPs spherical with (FCC) with space group Fm-3m. The XRD pattern is clear that the synthesized NPs by the green synthetic method are highly crystalline in nature and stable. This study will there for conform to the development and easy bioprocess for the synthesis of Ag NPs from FBRE and open a new possibility of synthesizing Ag NPs from natural products which will be useful in biomedical applications. The biological activities of the synthesized Ag NPs were evaluated in vitro through enzyme inhibition assays, where they exhibited significant inhibitory effects on urease, α-glucosidase, carbonic anhydrase II (CA-II), and xanthine oxidase (XO). Among these enzymes, Ag NPs showed the highest inhibition against CA-II (89.32%) and α-glucosidase (80.98%), surpassing the inhibitory effects of FBRE and demonstrating their potential as enzyme inhibitors. The Ag NPs exhibited an IC50 value of 0.19 µM against CA-II, which is comparable to acetazolamide, a standard CA-II inhibitor. Similarly, Ag NPs exhibited an IC50 of 90.65 µM against α-glucosidase, approaching the efficacy of the standard acarbose (IC50 = 28.98 µM). These results suggest that Ag NPs could serve as promising candidates for the development of therapeutic agents targeting these enzymes. In addition to their enzyme inhibition activity, the In Vivo pharmacological evaluation of Ag NPs revealed potent analgesic and sedative effects. In the acetic acid-induced writhing model, Ag NPs demonstrated dose-dependent analgesic activity, achieving 83.09% inhibition at the highest dose (10 mg/kg), which is comparable to the positive control, diclofenac sodium (84.01%). The extract also exhibited analgesic activity, but it was less potent, with a maximum inhibition of 68.09% at 100 mg/kg. In the open field test, Ag NPs showed a sedative effect, as evidenced by reduced locomotor activity at higher doses. The sedative effect of Ag NPs was significant at lower doses, with 16.09% inhibition at 10 mg/kg, whereas the extract exhibited a milder sedative effect, with a maximum inhibition of 36.66% at 100 mg/kg. The molecular docking was also performed to look out the the mechanism of the interaction of the NPS with the targeted enzyme. These results are comparable with the existing literature on the green-synthesized metal NPs which shows the applicability of this work [51,52]. These findings highlight the multifaceted potential of Ag NPs synthesized using FBRE. The green synthesis approach not only provides a sustainable method for NPs production but also results in NPs with promising pharmacological activities. The ability of Ag NPs to inhibit key enzymes involved in various diseases, as well as their analgesic and sedative effects, supports their potential as therapeutic agents in treating conditions such as cancer, diabetes, and inflammation. Furthermore, their biocompatibility and environmentally friendly synthesis route open new possibilities for their use in diagnostic and therapeutic applications, making them a valuable addition to the growing field of nanomedicine.

5. Conclusions

Ficus Benghalenis root extract (FBRE) was utilized successfully to synthesize Ag NPs where the extract was used as a bio-reductant and capping agent for a long time. The silver nitrate solution (AgNO3) with Ficus Benghalenis root extract (FBRE) used as a precursor, biomolecules present in the plant extract are reduced the Ag NPs. These Ag NPs could be of immense use, particularly in the field of biomedical. One of its most notable SPR absorption peaks 430nm observed which is a clear induction of the perfect spherical stable NPs that have high stability and significance in the biomedical field. Their physicochemical stability, enzyme inhibitory activities, and In Vivo pharmacological effects demonstrate their potential in therapeutic and diagnostic fields. The use of natural products in nanotechnology holds great promise for the development of sustainable and effective biomedical materials, paving the way for future innovations in nanomedicine.

Data Availability

All relevant data are contained within the paper.

Funding Statement

The author(s) received no specific funding for this work.

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Reviewer #1: Comments:

The article titled "Ficus benghalensis extract mediated green synthesis of silver nanoparticles, its Optimization, Characterization, Computational studies and its in vitro and in vivo Biological potential" presents valuable findings, but it has following shortcomings that must be addressed before the publication of the articel

Recommendation: Major Revision

1. Provide overlaid FTIR spectra of extract and NPs and highlight areas of change of wavenumber.

2. EDX spectra show peaks for various elements e.g., Cl. What is the reason behind this peak?

3. Stability of the NPs is an important parameter while studying the biomedical applications. Provide Zeta potential of the particles at different pH, Temperature, and after different time intervals.

4. While the article discusses in vitro biological activities and some in vivo evaluations, the extent of in vivo studies appears limited. More comprehensive in vivo studies could provide a better understanding of the pharmacological effects and safety of the synthesized silver nanoparticles (Ag NPs).

5. The findings are based on specific conditions and concentrations used in the assays. The applicability of these results to broader biological contexts or different formulations may not be fully addressed, which could limit the generalizability of the conclusions drawn.

6. The article mentions that the Ag NPs are stabilized by the Ficus benghalensis extract, it does not provide long-term stability data. This information is crucial for assessing the practical applications of the synthesized nanoparticles in biomedical fields.

7. The introduction discusses the importance of metallic nanoparticles (NPs) and their applications, it does not clearly define the specific research gap that this study aims to fill. A more explicit statement regarding what is lacking in current literature would strengthen the rationale for the study.

8. While discussing the biological applications, update the introduction section with these recent reports, i) doi: https://doi.org/10.3390/ph17081053, ii) https://doi.org/10.1016/j.jep.2023.116503, iii) https://doi.org/10.3390/genes16010016 iv) https://doi.org/10.1016/j.optlaseng.2024.108688 v) https://doi.org/10.1016/j.bioorg.2024.107415 vi) https://doi.org/10.1016/j.apsb.2024.02.005

9. Although the introduction mentions the medicinal properties of Ficus benghalensis, it could benefit from a more detailed background on why this particular plant was chosen for the synthesis of silver nanoparticles. Providing more context on its unique properties or previous studies would enhance the reader's understanding of its relevance.

10. The introduction highlights the eco-friendly nature of green synthesis but does not delve into the environmental implications of using Ficus benghalensis specifically. Discussing the sustainability aspect in more detail could provide a stronger justification for the choice of plant extract.

11. Cite some recent reports while discussing green synthesis of metal nps https://doi.org/10.1016/j.jece.2024.112576, https://doi.org/10.1016/j.molliq.2023.123622. https://doi.org/10.1016/j.jece.2024.113350, https://doi.org/10.3390/antiox12061201

12. The introduction mentions various methods of synthesizing Ag NPs but lacks a comparative analysis of the advantages and disadvantages of green synthesis versus conventional methods. This could help emphasize the significance of the chosen approach in the study.

13. While the introduction states that NPs have extensive applications in various fields, it could be more focused on the specific applications relevant to the synthesized Ag NPs. Highlighting particular areas where these nanoparticles could be beneficial would provide a clearer direction for the research.

14. The introduction does not address any potential limitations or challenges associated with the synthesis and application of Ag NPs. Acknowledging these aspects could provide a more balanced view and prepare the reader for the discussion of results later in the article.

15. Compare the results of biological applications with following nanomaterials

i) https://doi.org/10.1039/D3RA05070J, ii) https://doi.org/10.1016/j.ijbiomac.2023.128009, iii) https://doi.org/10.1080/14786419.2023.2295936, iv) https://doi.org/10.3389/fchem.2023.1202252, v) https://doi.org/10.1016/j.enmm.2022.100735, vi) https://doi.org/10.3390/molecules27113363, vii) https://doi.org/10.1016/j.surfin.2024.104556

Reviewer #2: The manuscript is good, but it needs major revision before publishing.

Abstract:

• The abstract is very long, it should be made more concise.

Introduction:

• The introduction is lengthy. Condense it by focusing on the most relevant background information.

• "Various characteristics of NPs including particle size, shape, morphology, and increased surface area, set NPs apart from their bulk counterparts" is a long and awkward sentence. Revise for clarity.

• "Fe NPs have been successfully synthesized using extracts from..." This paragraph feels like a list. Integrate these examples more smoothly into the narrative and indicated each one to its respective citation.

• Add more citations, many statements are not backed up by research.

• The last paragraph of the introduction is very long. Divide it into smaller more focused paragraphs.

Materials and Methods:

• "Ethics" section: "killed with cervical dislocation which is an approved disposal method of animal ethics" is awkwardly phrased. Please revise the sentence for clarity and include the specific year of issue.

• "Plant collection and extraction": Specify the exact duration of drying and the temperature used.

• "Nanoparticles synthesis": Use standard font.

• "Instrumentations": "NCEG-UOP" needs to be defined.

• "Computational studies": "221 layers of Ag" is confusing. Did you mean a 2x2x1 supercell? Clarify.

• "Kollman chargres" should be "Kollman charges."

• "In vivo activities": it must be capitalized, and then revise all throughout the manuscript.

Results:

• "221 layers of Ag" still needs clarification.

• There are many instances of inconsistent units and formatting.

Discussion:

• "Ag NPs are synthesized by the green synthesis method. The synthesized Ag NPs are chemically and physically stable in extract use for it as a capping agent and out of degradation." This sentence is very poorly written. Please rewrite.

• The discussion section is very short, it needs to be expanded.

• The discussion section needs more citations.

• The discussion does not do a good job of comparing the results to other research.

References:

• Consistency: The reference formatting is inconsistent. Ensure all references adhere to a single style guide (e.g., APA, MLA, or the journal's specific guidelines). Pay attention to italics, capitalization, and punctuation.

• Accessibility: Some references lack DOIs or URLs, making it difficult for readers to access the source material. Provide complete and accessible information for each reference.

• Accuracy: Double-check all references for accuracy in author names, titles, publication years, and other details.

General Recommendations:

• Proofread the entire manuscript for grammatical errors and typos.

• Improve the clarity and flow of the writing.

• Expand the discussion section to provide a more thorough analysis of the results.

• Add more citations.

• Consider having a native English speaker review the manuscript.

By addressing these points, the authors can significantly improve the quality and clarity of the manuscript.

Reviewer #3: The manuscript Ficus benghalensis extract mediated green synthesis of silver nanoparticles, its Optimization, Characterization, Computational studies and its in vitro and in vivo Biological potential, the section wise comments are

Title: title is attractive, self explanatory and can gain readers attention hence no change required

Abstract: This section is poorly presented though the work is nice so I suggest authors to rewrite this section by adding some results to make this section more clear

Introduction: Some syntax/typo errors which should be checked carefully and corrected. There are some less supportive references in this section which should be replaced with interesting work, few suggestion are made in the references section.

Result and discussion: well written and managed, however the figures presented are of low quality, I suggest authors to provide high quality figures as per requirement of the journal

Experimental section is very well written and the procedures adopted are as per standard procedures adopted in the field

References: Some less supportive references should be replaced with the following interesting work

replace reference number 11 and 12 with

https://doi.org/10.1007/s10904-020-01763-8

https://doi.org/10.1155/2021/3475036

The inclusion of the mentioned work can increase the quality of the manuscript, with the above mandatory points I recommend this manuscript for publication

**********

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Reviewer #1: Yes:  Dr Azhar Abbas

Reviewer #2: Yes:  Yahya Al-Awthan

Reviewer #3: No

**********

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PLoS One. 2025 Jul 1;20(7):e0326858. doi: 10.1371/journal.pone.0326858.r002

Author response to Decision Letter 1


7 Apr 2025

Dear Emmanuel Oke

Academic Editor

PLOS ONE

PLOS ONE

Thank you very much for the reviewers’ comments concerning our manuscript. We have studied the reviewer comments carefully and have made several revisions to the text. We would like to express our appreciation to you and the reviewers for your many suggestions, which have greatly improved our manuscript. All changes are shown in yellow, highlighted in the revised manuscript, and are outlined below on a point-by-point basis (red color).

We hope these corrections and revisions are satisfactory and that the manuscript now meets the requirements for publication.

We look forward to hearing from you at your earliest convenience.

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Reply: Done

2. To comply with PLOS ONE submissions requirements, in your Methods section, please provide additional information regarding the experiments involving animals and ensure you have included details on (1) methods of sacrifice, (2) methods of anesthesia and/or analgesia, and (3) efforts to alleviate suffering.

Reply: Done

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Reply: Already done

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NA.

Reply: Thanks

Please complete your Competing Interests on the online submission form to state any Competing Interests. If you have no competing interests, please state "The authors have declared that no competing interests exist.", as detailed online in our guide for authors at http://journals.plos.org/plosone/s/submit-now

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Reply: Already done

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Reply: Already done

Additional Editor Comments :

We note that one or more reviewers have recommended that you cite specific previously published works. As always, we recommend that you please review and evaluate the requested works to determine whether they are relevant and should be cited. It is not a requirement to cite these works.

Reply: Thanks all related papers have been cited.

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Yes

Reviewer #2: Yes

Reviewer #3: Yes

Reply: Thanks

________________________________________

2. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: Yes

Reviewer #2: Yes

Reviewer #3: N/A

Reply: Thanks the necessary corrections have been done.

________________________________________

3. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: Yes

Reviewer #2: Yes

Reviewer #3: Yes

Reply: Thanks the necessary corrections have been done.

________________________________________

4. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: Yes

Reviewer #2: Yes

Reviewer #3: Yes

Reply: Thanks the necessary corrections have been done.

________________________________________

5. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: Comments:

The article titled "Ficus benghalensis extract mediated green synthesis of silver nanoparticles, its Optimization, Characterization, Computational studies and its in vitro and in vivo Biological potential" presents valuable findings, but it has following shortcomings that must be addressed before the publication of the articel

Recommendation: Major Revision

Reply: Dear reviewer, thank you for the time you spared with our manuscript and we hope that the suggestions you recommended will greatly improve the quality of this paper.

1. Provide overlaid FTIR spectra of extract and NPs and highlight areas of change of wavenumber.

Reply: Dear reviewer, thank you for your suggestions. We appreciate your concern about the overlaid FTIR of spectra of the extract and NPs. The observed shifts in wavenumber and changes in peak intensities have been identified and are now clearly highlighted and discussed. Please note that the FTIR measurements were conducted at a collaborating institution, which provided us with graphical outputs rather than raw Excel data. Nonetheless, we have ensured that all relevant spectral changes are accurately presented and interpreted.

2. EDX spectra show peaks for various elements e.g., Cl. What is the reason behind this peak?

Reply: The Cl peak observed in the EDX spectrum may be attributed to trace environmental contamination or residual chloride ions from the plant extract. Additionally, minor Cl contamination from reagents, solvents, or laboratory conditions cannot be ruled out. However, the presence of Cl does not significantly impact the structural integrity or properties of the synthesized nanoparticles.

3. Stability of the NPs is an important parameter while studying the biomedical applications. Provide Zeta potential of the particles at different pH, Temperature, and after different time intervals.

Reply: Thanks, we acknowledge the reviewer’s concern regarding the stability of NPs, particularly in biomedical applications. While zeta potential measurements at different pH, temperatures, and time intervals would provide direct experimental insight into colloidal stability, we were unable to perform these measurements due to facility constraints. However, to address the stability aspect, we conducted first-principles DFT calculations to assess the thermodynamic and mechanical stability of the system. The calculated cohesive energy (-2.520 eV/atom) and enthalpy of formation (-0.678 eV/atom) indicate a thermodynamically stable material, as negative enthalpy formation values suggest a favorability in formation. Furthermore, we performed mechanical stability analysis using equation-of-state (EOS) fitting with the Murnaghan, Birch-Murnaghan, Birch, and Vinet models. The bulk modulus values obtained (ranging from 54.39 GPa to 65.54 GPa) confirm the structural robustness of the system. The close agreement between equilibrium energy values across different models further validates the mechanical integrity of the material.

Thus, while zeta potential measurements remain an important experimental metric for dispersion stability, our DFT results strongly support the intrinsic stability of the NPs, making them suitable for further applications.

4. While the article discusses in vitro biological activities and some in vivo evaluations, the extent of in vivo studies appears limited. More comprehensive in vivo studies could provide a better understanding of the pharmacological effects and safety of the synthesized silver nanoparticles (Ag NPs).

Reply: Dear reviewer, thank you for your valuable comment. Our study provides an initial in vivo evaluation of Ag NPs, focusing on key pharmacological effects. While comprehensive in vivo studies are essential, our findings establish a strong foundation for future research, including pharmacokinetic and toxicological assessments. We ensured appropriate dosages and controls, demonstrating dose-dependent efficacy. Future work will further explore their safety and long-term effects.

5. The findings are based on specific conditions and concentrations used in the assays. The applicability of these results to broader biological contexts or different formulations may not be fully addressed, which could limit the generalizability of the conclusions drawn.

Reply: Dear Reviewer, thank you for your valuable comment. Our study was designed with carefully optimized conditions to ensure the reliability and reproducibility of the results. The selected concentrations and assay conditions align with established methodologies in nanoparticle-based biomedical research. While broader biological applicability can be explored in future studies, the significant enzymatic inhibition and pharmacological effects observed in our work strongly support the potential of Ag NPs in biomedical applications. Moreover, the consistency of our findings across multiple assays reinforces the validity of our conclusions within the defined experimental framework

6. The article mentions that the Ag NPs are stabilized by the Ficus benghalensis extract, it does not provide long-term stability data. This information is crucial for assessing the practical applications of the synthesized nanoparticles in biomedical fields.

Reply: Dear Reviewer, thank you for your insightful comment. We acknowledge the importance of long-term stability data for assessing the practical applications of Ag NPs. In our study, the stability of Ag NPs was confirmed through FT-IR analysis, which demonstrated effective capping by Ficus benghalensis extract, preventing aggregation. Additionally, no significant changes in UV-Vis absorbance were observed over a monitored period, indicating structural integrity. Future research will focus on evaluating long-term stability under various physiological conditions to further support their biomedical applications.

7. The introduction discusses the importance of metallic nanoparticles (NPs) and their applications, it does not clearly define the specific research gap that this study aims to fill. A more explicit statement regarding what is lacking in current literature would strengthen the rationale for the study.

Reply: Dear Reviewer, thank you for your valuable comment. We have now explicitly highlighted the research gap by addressing the lack of molecular-level insights into the enzyme-inhibitory mechanisms of Ag NPs. Molecular docking analysis has been incorporated to elucidate their interactions with urease, α-glucosidase, carbonic anhydrase II, and xanthine oxidase. The revised introduction now emphasizes these mechanistic insights, along with the role of Ficus benghalensis bioactive molecules in stabilizing Ag NPs.

8. While discussing the biological applications, update the introduction section with these recent reports, i) doi: https://doi.org/10.3390/ph17081053, ii) https://doi.org/10.1016/j.jep.2023.116503, iii) https://doi.org/10.3390/genes16010016 iv) https://doi.org/10.1016/j.optlaseng.2024.108688 v) https://doi.org/10.1016/j.bioorg.2024.107415 vi) https://doi.org/10.1016/j.apsb.2024.02.005.

Reply: Dear Reviewer, Thank you for your valuable suggestions. The given articles have been cited at their appropriate places, and necessary information has been added to them.

9. Although the introduction mentions the medicinal properties of Ficus benghalensis, it could benefit from a more detailed background on why this particular plant was chosen for the synthesis of silver nanoparticles. Providing more context on its unique properties or previous studies would enhance the reader's understanding of its relevance.

Reply: Dear Reviewer, thank you for your valuable suggestion. We have now elaborated on the rationale for selecting Ficus benghalensis for the synthesis of silver nanoparticles. Additional background on its unique phytochemical composition, medicinal significance, and previous studies supporting its use in nanoparticle synthesis has been incorporated into the introduction. The relevant references have been cited at appropriate places to enhance the reader's understanding.

10. The introduction highlights the eco-friendly nature of green synthesis but does not delve into the environmental implications of using Ficus benghalensis specifically. Discussing the sustainability aspect in more detail could provide a stronger justification for the choice of plant extract.

Reply: Dear Reviewer, We have now expanded the discussion on the environmental implications of using Ficus benghalensis for green synthesis. The sustainability aspects, including its abundance, renewable nature, and potential for eco-friendly nanoparticle production, have been highlighted to strengthen the justification for its selection.

11. Cite some recent reports while discussing green synthesis of metal nps https://doi.org/10.1016/j.jece.2024.112576, https://doi.org/10.1016/j.molliq.2023.123622. https://doi.org/10.1016/j.jece.2024.113350, https://doi.org/10.3390/antiox12061201

Reply: Dear Reviewer, thank you for your valuable suggestion. The introduction has been updated by citing the above reference at their appropriate places.

12. The introduction mentions various methods of synthesizing Ag NPs but lacks a comparative analysis of the advantages and disadvantages of green synthesis versus conventional methods. This could help emphasize the significance of the chosen approach in the study.

Reply: Dear reviewer, thankyou for your suggestion. The suggested corrections have been made in the revised manuscript.

13. While the introduction states that NPs have extensive applications in various fields, it could be more focused on the specific applications relevant to the synthesized Ag NPs. Highlighting particular areas where these nanoparticles could be beneficial would provide a clearer direction for the research.

Reply: Dear reviewer, Thank you for your insightful suggestion. We have now refined the introduction to specifically highlight the potential applications of the synthesized AgNPs.

14. The introduction does not address any potential limitations or challenges associated with the synthesis and application of Ag NPs. Acknowledging these aspects could provide a more balanced view and prepare the reader for the discussion of results later in the article.

Reply: Dear reviewer, thank you for your valuable suggestions. We have addressed the limitations and challenges in the introduction of revised manuscript.

15. Compare the results of biological applications with the following nanomaterials

i) https://doi.org/10.1039/D3RA05070J, ii) https://doi.org/10.1016/j.ijbiomac.2023.128009, iii) https://doi.org/10.1080/14786419.2023.2295936, iv) htt

Attachment

Submitted filename: Comments Reply.docx

pone.0326858.s002.docx (33.5KB, docx)

Decision Letter 1

Rajesh Singh

Ficus benghalensis extract mediated green synthesis of silver nanoparticles, its Optimization, Characterization, Computational studies and its in vitro and in vivo Biological potential

PONE-D-25-01658R1

Dear Dr. Rauf,

We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements.

Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication.

An invoice will be generated when your article is formally accepted. Please note, if your institution has a publishing partnership with PLOS and your article meets the relevant criteria, all or part of your publication costs will be covered. Please make sure your user information is up-to-date by logging into Editorial Manager at Editorial Manager®  and clicking the ‘Update My Information' link at the top of the page. If you have any questions relating to publication charges, please contact our Author Billing department directly at authorbilling@plos.org.

If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org.

Kind regards,

Rajesh Kumar Singh, Ph.D.

Academic Editor

PLOS ONE

Additional Editor Comments (optional):

This manuscript entitled "Ficus benghalensis extract mediated green synthesis of silver nanoparticles, its Optimization, Characterization, Computational studies and its in vitro and in vivo Biological potential" Manuscript Id: PONE-D-25-01658R1 has been revised as per the reviewers comments but still few errors are existing.

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

Reviewer #1: All comments have been addressed

Reviewer #3: All comments have been addressed

Reviewer #4: All comments have been addressed

Reviewer #5: All comments have been addressed

**********

2. Is the manuscript technically sound, and do the data support the conclusions??>

Reviewer #1: Yes

Reviewer #3: Yes

Reviewer #4: Yes

Reviewer #5: Yes

**********

3. Has the statistical analysis been performed appropriately and rigorously? -->?>

Reviewer #1: Yes

Reviewer #3: Yes

Reviewer #4: N/A

Reviewer #5: Yes

**********

4. Have the authors made all data underlying the findings in their manuscript fully available??>

The PLOS Data policy

Reviewer #1: Yes

Reviewer #3: Yes

Reviewer #4: Yes

Reviewer #5: Yes

**********

5. Is the manuscript presented in an intelligible fashion and written in standard English??>

Reviewer #1: Yes

Reviewer #3: Yes

Reviewer #4: Yes

Reviewer #5: Yes

**********

Reviewer #1: The author has addressed all the queries raised so i will recommend publication of the article in current from.

Reviewer #3: The authors have incorporated all the points so I feel pleasure to recommend this manuscript in its present form

Reviewer #4: The authors of the manuscript entitled “Ficus benghalensis extract mediated green synthesis of silver nanoparticles, its Optimization, Characterization, Computational studies and its in vitro and in vivo Biological potential” have addressed almost all comments, although the manuscript needs some grammatical corrections before it will be accepted.

Reviewer #5: The authors of the manuscript entitled “Ficus benghalensis extract mediated green synthesis of silver nanoparticles, its Optimization, Characterization, Computational studies and its in vitro and in vivo Biological potential” have addressed almost all comments, although the manuscript needs some grammatical corrections before it will be accepted.

Additionally, not necessary but if possible then add some key features or link of biological effects which shown in results with different diseases for further use or treatment.

**********

what does this mean? ). If published, this will include your full peer review and any attached files.

If you choose “no”, your identity will remain anonymous but your review may still be made public.

Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy

Reviewer #1: No

Reviewer #3: No

Reviewer #4: Yes:  Dr. Adwitiya Banerjee

Reviewer #5: No

**********

Acceptance letter

Rajesh Singh

PONE-D-25-01658R1

PLOS ONE

Dear Dr. Rauf,

I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now being handed over to our production team.

At this stage, our production department will prepare your paper for publication. This includes ensuring the following:

* All references, tables, and figures are properly cited

* All relevant supporting information is included in the manuscript submission,

* There are no issues that prevent the paper from being properly typeset

You will receive further instructions from the production team, including instructions on how to review your proof when it is ready. Please keep in mind that we are working through a large volume of accepted articles, so please give us a few days to review your paper and let you know the next and final steps.

Lastly, if your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org.

If we can help with anything else, please email us at customercare@plos.org.

Thank you for submitting your work to PLOS ONE and supporting open access.

Kind regards,

PLOS ONE Editorial Office Staff

on behalf of

Dr. Rajesh Kumar Singh

Academic Editor

PLOS ONE

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    pone.0326858.s002.docx (33.5KB, docx)

    Data Availability Statement

    All relevant data are contained within the paper.


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