Skip to main content
Biochemical Journal logoLink to Biochemical Journal
. 2001 Dec 15;360(Pt 3):651–656. doi: 10.1042/0264-6021:3600651

Allosteric behaviour of 1:5 hybrids of mutant subunits of Clostridium symbiosum glutamate dehydrogenase differing in their amino acid specificity.

A Goyal 1, X G Wang 1, P C Engel 1
PMCID: PMC1222269  PMID: 11736656

Abstract

Hybrid hexamers were made by refolding mixtures of two mutant forms of clostridial glutamate dehydrogenase. Mutant Cys320Ser (C320S) has a similar activity to the wild-type enzyme, but is unreactive with Ellman's reagent, 5,5'-dithiobis(2-nitrobenzoate) (DTNB). The triple mutant Lys89Leu/Ala163Gly/Ser380Ala (K89L/A163G/S380A), active with norleucine but not glutamate, is inactivated by DTNB, since the amino acid residue at position 320 is a cysteine residue. The chosen ratio favoured 1:5 hybrids of the triple mutant and C320S. The renatured mixture was treated with DTNB and separated on an NAD(+)-agarose column to which only C320S subunits bind tightly. Fractions were monitored for glutamate and norleucine activity and for releasable thionitrobenzoate to establish subunit stoichiometry. A fraction highly enriched in the 1:5 hybrid was identified. Homohexamers (C320S with 40 mM glutamate and 1 mM NAD(+) at pH 8.8, or K89L/A163G/S380A with 70 mM norleucine and 1 mM NAD(+) at pH 8.5) showed allosteric activation; succinate activated C320S approx. 50-fold (EC(50)=70 mM, h=2.4), and glutarate gave approx. 30-fold activation (EC(50)=35 mM, h=2.3). For the triple mutant, corresponding values were 80 mM and 2.2 for succinate, and 75 mM and 1.7 for glutarate, but maximal activation was only about 2-fold. In the 1:5 hybrid, with only one norleucine-active subunit per hexamer, responses to glutarate and succinate were still co-operative, and activation was more extensive than in the triple mutant homohexamer. A single norleucine-active subunit can thus respond co-operatively to a substrate analogue at the other five inactive sites. On the other hand, similar hyperbolic dependence on the norleucine concentration for the hybrid and the triple mutant homohexamer reflected the inability of C320S subunits to bind norleucine. With glutamate at pH 8.8, an h value of 3.6 was obtained for the 1:5 hybrid, in contrast with an h value of 5.2 for the C320S homohexamer. The "foreign" subunit evidently impedes inter-subunit communication to some extent.

Full Text

The Full Text of this article is available as a PDF (146.8 KB).

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Aghajanian S. A., Martin S. R., Engel P. C. Urea-induced inactivation and denaturation of clostridial glutamate dehydrogenase: the absence of stable dimeric or trimeric intermediates. Biochem J. 1995 Nov 1;311(Pt 3):905–910. doi: 10.1042/bj3110905. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. Aghajanian S. A., Wang X. G., Engel P. C. In vitro construction of inter-subunit hybrids in Clostridium symbiosum glutamate dehydrogenase. Biochem Soc Trans. 1996 Feb;24(1):136S–136S. doi: 10.1042/bst024136s. [DOI] [PubMed] [Google Scholar]
  3. Aghajanian S., Engel P. C. Re-activation of Clostridium symbiosum glutamate dehydrogenase from subunits denatured by urea. Biochem J. 1997 Sep 15;326(Pt 3):649–655. doi: 10.1042/bj3260649. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Aghajanian S., Engel P. C. Use of protein engineering to explore subunit interactions in an allosteric enzyme: construction of inter-subunit hybrids in Clostridium symbiosum glutamate dehydrogenase. Protein Eng. 1998 Jul;11(7):569–575. doi: 10.1093/protein/11.7.569. [DOI] [PubMed] [Google Scholar]
  5. Baker P. J., Britton K. L., Engel P. C., Farrants G. W., Lilley K. S., Rice D. W., Stillman T. J. Subunit assembly and active site location in the structure of glutamate dehydrogenase. Proteins. 1992 Jan;12(1):75–86. doi: 10.1002/prot.340120109. [DOI] [PubMed] [Google Scholar]
  6. Basso L. A., Engel P. C. Initial formation of a non-covalent enzyme-reagent complex during the inactivation of clostridial glutamate dehydrogenase by Ellman's reagent: determination of the enzyme's dissociation constant for the binary complex with NAD+ from protection studies. Biochim Biophys Acta. 1994 Dec 14;1209(2):222–226. doi: 10.1016/0167-4838(94)90188-0. [DOI] [PubMed] [Google Scholar]
  7. Dean J. L., Cölfen H., Harding S. E., Rice D. W., Engel P. C. Alteration of the quaternary structure of glutamate dehydrogenase from Clostridium symbiosum by a single mutation distant from the subunit interfaces. Eur Biophys J. 1997;25(5-6):417–422. doi: 10.1007/s002490050055. [DOI] [PubMed] [Google Scholar]
  8. Dean J. L., Wang X. G., Teller J. K., Waugh M. L., Britton K. L., Baker P. J., Stillman T. J., Martin S. R., Rice D. W., Engel P. C. The catalytic role of aspartate in the active site of glutamate dehydrogenase. Biochem J. 1994 Jul 1;301(Pt 1):13–16. doi: 10.1042/bj3010013. [DOI] [PMC free article] [PubMed] [Google Scholar]
  9. Engel P. C., Dalziel K. Kinetic studies of glutamate dehydrogenase with glutamate and norvaline as substrates. Coenzyme activation and negative homotropic interactions in allosteric enzymes. Biochem J. 1969 Dec;115(4):621–631. doi: 10.1042/bj1150621. [DOI] [PMC free article] [PubMed] [Google Scholar]
  10. FRIEDEN C. Glutamic dehydrogenase. II. The effect of various nucleotides on the association-dissociation and kinetic properties. J Biol Chem. 1959 Apr;234(4):815–820. [PubMed] [Google Scholar]
  11. Goyal A., Aghajanian S., Hayden B. M., Wang X. G., Engel P. C. Construction and investigation of co-operativity in hybrids of norleucine- and glutamate-active subunits of clostridial glutamate dehydrogenase. Biochem Soc Trans. 1998 Feb;26(1):S27–S27. doi: 10.1042/bst026s027. [DOI] [PubMed] [Google Scholar]
  12. Goyal A., Aghajanian S., Hayden B. M., Wang X. G., Engel P. C. Intersubunit communication in hybrid hexamers of K89L/A163G/S380A and C320S mutants of glutamate dehydrogenase from Clostridium symbiosum. Biochemistry. 1997 Dec 2;36(48):15000–15005. doi: 10.1021/bi971419d. [DOI] [PubMed] [Google Scholar]
  13. Hayden B. M., Engel P. C. Construction, separation and properties of hybrid hexamers of glutamate dehydrogenase in which five of the six subunits are contributed by the catalytically inert D165S. Eur J Biochem. 2001 Mar;268(5):1173–1180. doi: 10.1046/j.1432-1327.2001.01949.x. [DOI] [PubMed] [Google Scholar]
  14. LéJohn H. B., Stevenson R. M., Meuser R. Multivalent regulation of glutamic dehydrogenases from fungi. Effects of adenylates, guanylates, and acyl coenzyme A derivatives. J Biol Chem. 1970 Nov 10;245(21):5569–5576. [PubMed] [Google Scholar]
  15. MONOD J., CHANGEUX J. P., JACOB F. Allosteric proteins and cellular control systems. J Mol Biol. 1963 Apr;6:306–329. doi: 10.1016/s0022-2836(63)80091-1. [DOI] [PubMed] [Google Scholar]
  16. Millevoi S., Pasquo A., Chiaraluce R., Consalvi V., Giangiacomo L., Britton K. L., Stillman T. J., Rice D. W., Engel P. C. A monomeric mutant of Clostridium symbiosum glutamate dehydrogenase: comparison with a structured monomeric intermediate obtained during refolding. Protein Sci. 1998 Apr;7(4):966–974. doi: 10.1002/pro.5560070414. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Pasquo A., Britton K. L., Stillman T. J., Rice D. W., Cölfen H., Harding S. E., Scandurra R., Engel P. C. Construction of a dimeric form of glutamate dehydrogenase from Clostridium symbiosum by site-directed mutagenesis. Biochim Biophys Acta. 1996 Oct 17;1297(2):149–158. doi: 10.1016/s0167-4838(96)00017-9. [DOI] [PubMed] [Google Scholar]
  18. Peterson P. E., Smith T. J. The structure of bovine glutamate dehydrogenase provides insights into the mechanism of allostery. Structure. 1999 Jul 15;7(7):769–782. doi: 10.1016/s0969-2126(99)80101-4. [DOI] [PubMed] [Google Scholar]
  19. Stillman T. J., Baker P. J., Britton K. L., Rice D. W. Conformational flexibility in glutamate dehydrogenase. Role of water in substrate recognition and catalysis. J Mol Biol. 1993 Dec 20;234(4):1131–1139. doi: 10.1006/jmbi.1993.1665. [DOI] [PubMed] [Google Scholar]
  20. Stillman T. J., Migueis A. M., Wang X. G., Baker P. J., Britton K. L., Engel P. C., Rice D. W. Insights into the mechanism of domain closure and substrate specificity of glutamate dehydrogenase from Clostridium symbiosum. J Mol Biol. 1999 Jan 15;285(2):875–885. doi: 10.1006/jmbi.1998.2335. [DOI] [PubMed] [Google Scholar]
  21. Syed S. E., Engel P. C., Parker D. M. Functional studies of a glutamate dehydrogenase with known three-dimensional structure: steady-state kinetics of the forward and reverse reactions catalysed by the NAD(+)-dependent glutamate dehydrogenase of Clostridium symbiosum. Biochim Biophys Acta. 1991 Dec 6;1115(2):123–130. doi: 10.1016/0304-4165(91)90020-h. [DOI] [PubMed] [Google Scholar]
  22. Syed S. E., Hornby D. P., Brown P. E., Fitton J. E., Engel P. C. Site and significance of chemically modifiable cysteine residues in glutamate dehydrogenase of Clostridium symbiosum and the use of protection studies to measure coenzyme binding. Biochem J. 1994 Feb 15;298(Pt 1):107–113. doi: 10.1042/bj2980107. [DOI] [PMC free article] [PubMed] [Google Scholar]
  23. Wang X. G., Britton K. L., Stillman T. J., Rice D. W., Engel P. C. Conversion of a glutamate dehydrogenase into methionine/norleucine dehydrogenase by site-directed mutagenesis. Eur J Biochem. 2001 Nov;268(22):5791–5799. doi: 10.1046/j.0014-2956.2001.02523.x. [DOI] [PubMed] [Google Scholar]
  24. Wang X. G., Engel P. C. Identification of the reactive cysteine in clostridial glutamate dehydrogenase by site-directed mutagenesis and proof that this residue is not strictly essential. Protein Eng. 1994 Aug;7(8):1013–1016. doi: 10.1093/protein/7.8.1013. [DOI] [PubMed] [Google Scholar]
  25. Wang X. G., Engel P. C. Positive cooperativity with Hill coefficients of up to 6 in the glutamate concentration dependence of steady-state reaction rates measured with clostridial glutamate dehydrogenase and the mutant A163G at high pH. Biochemistry. 1995 Sep 12;34(36):11417–11422. doi: 10.1021/bi00036a014. [DOI] [PubMed] [Google Scholar]
  26. West D. J., Tuveson R. W., Barratt R. W., Fincham J. R. Allosteric effects in nicotinamide adenine dinucleotide phosphate-specific glutamate dehydrogenase from Neurospora. J Biol Chem. 1967 May 10;242(9):2134–2138. [PubMed] [Google Scholar]

Articles from Biochemical Journal are provided here courtesy of The Biochemical Society

RESOURCES