Abstract
The human double-stranded (ds) RNA-binding protein Staufen (hStau) is considered to have a role in RNA transport and its localization. By using sedimentation analysis on sucrose gradients, we showed that the Staufen isoform with an apparent molecular mass of 55 kDa (Stau(55)) co-fractionated with ribosomes and associated with both the 40 and 60 S ribosomal subunits, suggesting that the Staufen isoform hStau(55) plays some role in translation. To map the determinant(s) involved in this association, we generated a series of deletion mutants and analysed their subcellular distribution by cell fractionation and fluorescent immunomicroscopy. Our results demonstrated that multiple determinants promote hStau(55)-ribosome association via both an RNA-binding-dependent mechanism and protein-protein interaction. The RNA-binding activity of the ds RNA-binding protein domain 3 (dsRBD3) but not that of dsRBD4 is the first determinant. Although necessary for stable association with ribosomes, dsRBD3 alone is not sufficient and needs other determinants as co-factors. Consistently, when expressed together, dsRBD4 and the tubulin-binding domain constitute the minimal Stau(55)/ribosome protein-protein association domain. This region of Stau(55) is sufficient to associate with ribosomes independently, but requires the RNA-binding activity of dsRBD3 for complete association. Thus the results are consistent with a putative role for Stau(55) in the regulation of translation.
Full Text
The Full Text of this article is available as a PDF (343.2 KB).
Selected References
These references are in PubMed. This may not be the complete list of references from this article.
- Antebi A., Fink G. R. The yeast Ca(2+)-ATPase homologue, PMR1, is required for normal Golgi function and localizes in a novel Golgi-like distribution. Mol Biol Cell. 1992 Jun;3(6):633–654. doi: 10.1091/mbc.3.6.633. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Benkirane M., Neuveut C., Chun R. F., Smith S. M., Samuel C. E., Gatignol A., Jeang K. T. Oncogenic potential of TAR RNA binding protein TRBP and its regulatory interaction with RNA-dependent protein kinase PKR. EMBO J. 1997 Feb 3;16(3):611–624. doi: 10.1093/emboj/16.3.611. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Brizard F., Luo M., Desgroseillers L. Genomic organization of the human and mouse stau genes. DNA Cell Biol. 2000 Jun;19(6):331–339. doi: 10.1089/10445490050043308. [DOI] [PubMed] [Google Scholar]
- Bycroft M., Grünert S., Murzin A. G., Proctor M., St Johnston D. NMR solution structure of a dsRNA binding domain from Drosophila staufen protein reveals homology to the N-terminal domain of ribosomal protein S5. EMBO J. 1995 Jul 17;14(14):3563–3571. doi: 10.1002/j.1460-2075.1995.tb07362.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Cosentino G. P., Venkatesan S., Serluca F. C., Green S. R., Mathews M. B., Sonenberg N. Double-stranded-RNA-dependent protein kinase and TAR RNA-binding protein form homo- and heterodimers in vivo. Proc Natl Acad Sci U S A. 1995 Oct 10;92(21):9445–9449. doi: 10.1073/pnas.92.21.9445. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Eckmann C. R., Jantsch M. F. Xlrbpa, a double-stranded RNA-binding protein associated with ribosomes and heterogeneous nuclear RNPs. J Cell Biol. 1997 Jul 28;138(2):239–253. doi: 10.1083/jcb.138.2.239. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Green S. R., Manche L., Mathews M. B. Two functionally distinct RNA-binding motifs in the regulatory domain of the protein kinase DAI. Mol Cell Biol. 1995 Jan;15(1):358–364. doi: 10.1128/mcb.15.1.358. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Jockers R., Da Silva A., Strosberg A. D., Bouvier M., Marullo S. New molecular and structural determinants involved in beta 2-adrenergic receptor desensitization and sequestration. Delineation using chimeric beta 3/beta 2-adrenergic receptors. J Biol Chem. 1996 Apr 19;271(16):9355–9362. doi: 10.1074/jbc.271.16.9355. [DOI] [PubMed] [Google Scholar]
- Kiebler M. A., DesGroseillers L. Molecular insights into mRNA transport and local translation in the mammalian nervous system. Neuron. 2000 Jan;25(1):19–28. doi: 10.1016/s0896-6273(00)80868-5. [DOI] [PubMed] [Google Scholar]
- Kiebler M. A., Hemraj I., Verkade P., Köhrmann M., Fortes P., Marión R. M., Ortín J., Dotti C. G. The mammalian staufen protein localizes to the somatodendritic domain of cultured hippocampal neurons: implications for its involvement in mRNA transport. J Neurosci. 1999 Jan 1;19(1):288–297. doi: 10.1523/JNEUROSCI.19-01-00288.1999. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Kim-Ha J., Kerr K., Macdonald P. M. Translational regulation of oskar mRNA by bruno, an ovarian RNA-binding protein, is essential. Cell. 1995 May 5;81(3):403–412. doi: 10.1016/0092-8674(95)90393-3. [DOI] [PubMed] [Google Scholar]
- Knowles R. B., Sabry J. H., Martone M. E., Deerinck T. J., Ellisman M. H., Bassell G. J., Kosik K. S. Translocation of RNA granules in living neurons. J Neurosci. 1996 Dec 15;16(24):7812–7820. doi: 10.1523/JNEUROSCI.16-24-07812.1996. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Krichevsky A. M., Kosik K. S. Neuronal RNA granules: a link between RNA localization and stimulation-dependent translation. Neuron. 2001 Nov 20;32(4):683–696. doi: 10.1016/s0896-6273(01)00508-6. [DOI] [PubMed] [Google Scholar]
- Krovat B. C., Jantsch M. F. Comparative mutational analysis of the double-stranded RNA binding domains of Xenopus laevis RNA-binding protein A. J Biol Chem. 1996 Nov 8;271(45):28112–28119. doi: 10.1074/jbc.271.45.28112. [DOI] [PubMed] [Google Scholar]
- Kumar K. U., Srivastava S. P., Kaufman R. J. Double-stranded RNA-activated protein kinase (PKR) is negatively regulated by 60S ribosomal subunit protein L18. Mol Cell Biol. 1999 Feb;19(2):1116–1125. doi: 10.1128/mcb.19.2.1116. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Köhrmann M., Luo M., Kaether C., DesGroseillers L., Dotti C. G., Kiebler M. A. Microtubule-dependent recruitment of Staufen-green fluorescent protein into large RNA-containing granules and subsequent dendritic transport in living hippocampal neurons. Mol Biol Cell. 1999 Sep;10(9):2945–2953. doi: 10.1091/mbc.10.9.2945. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Langland J. O., Kao P. N., Jacobs B. L. Nuclear factor-90 of activated T-cells: A double-stranded RNA-binding protein and substrate for the double-stranded RNA-dependent protein kinase, PKR. Biochemistry. 1999 May 11;38(19):6361–6368. doi: 10.1021/bi982410u. [DOI] [PubMed] [Google Scholar]
- Li P., Yang X., Wasser M., Cai Y., Chia W. Inscuteable and Staufen mediate asymmetric localization and segregation of prospero RNA during Drosophila neuroblast cell divisions. Cell. 1997 Aug 8;90(3):437–447. doi: 10.1016/s0092-8674(00)80504-8. [DOI] [PubMed] [Google Scholar]
- Marión R. M., Fortes P., Beloso A., Dotti C., Ortín J. A human sequence homologue of Staufen is an RNA-binding protein that is associated with polysomes and localizes to the rough endoplasmic reticulum. Mol Cell Biol. 1999 Mar;19(3):2212–2219. doi: 10.1128/mcb.19.3.2212. [DOI] [PMC free article] [PubMed] [Google Scholar]
- McMillan N. A., Chun R. F., Siderovski D. P., Galabru J., Toone W. M., Samuel C. E., Mak T. W., Hovanessian A. G., Jeang K. T., Williams B. R. HIV-1 Tat directly interacts with the interferon-induced, double-stranded RNA-dependent kinase, PKR. Virology. 1995 Nov 10;213(2):413–424. doi: 10.1006/viro.1995.0014. [DOI] [PubMed] [Google Scholar]
- Micklem D. R., Adams J., Grünert S., St Johnston D. Distinct roles of two conserved Staufen domains in oskar mRNA localization and translation. EMBO J. 2000 Mar 15;19(6):1366–1377. doi: 10.1093/emboj/19.6.1366. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Monshausen M., Putz U., Rehbein M., Schweizer M., DesGroseillers L., Kuhl D., Richter D., Kindler S. Two rat brain staufen isoforms differentially bind RNA. J Neurochem. 2001 Jan;76(1):155–165. doi: 10.1046/j.1471-4159.2001.00061.x. [DOI] [PubMed] [Google Scholar]
- Mouland A. J., Mercier J., Luo M., Bernier L., DesGroseillers L., Cohen E. A. The double-stranded RNA-binding protein Staufen is incorporated in human immunodeficiency virus type 1: evidence for a role in genomic RNA encapsidation. J Virol. 2000 Jun;74(12):5441–5451. doi: 10.1128/jvi.74.12.5441-5451.2000. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Nanduri S., Carpick B. W., Yang Y., Williams B. R., Qin J. Structure of the double-stranded RNA-binding domain of the protein kinase PKR reveals the molecular basis of its dsRNA-mediated activation. EMBO J. 1998 Sep 15;17(18):5458–5465. doi: 10.1093/emboj/17.18.5458. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Pachter J. S. Association of mRNA with the cytoskeletal framework: its role in the regulation of gene expression. Crit Rev Eukaryot Gene Expr. 1992;2(1):1–18. [PubMed] [Google Scholar]
- Patel R. C., Stanton P., Sen G. C. Specific mutations near the amino terminus of double-stranded RNA-dependent protein kinase (PKR) differentially affect its double-stranded RNA binding and dimerization properties. J Biol Chem. 1996 Oct 11;271(41):25657–25663. doi: 10.1074/jbc.271.41.25657. [DOI] [PubMed] [Google Scholar]
- Ramos A., Grünert S., Adams J., Micklem D. R., Proctor M. R., Freund S., Bycroft M., St Johnston D., Varani G. RNA recognition by a Staufen double-stranded RNA-binding domain. EMBO J. 2000 Mar 1;19(5):997–1009. doi: 10.1093/emboj/19.5.997. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Schmedt C., Green S. R., Manche L., Taylor D. R., Ma Y., Mathews M. B. Functional characterization of the RNA-binding domain and motif of the double-stranded RNA-dependent protein kinase DAI (PKR). J Mol Biol. 1995 May 26;249(1):29–44. doi: 10.1006/jmbi.1995.0278. [DOI] [PubMed] [Google Scholar]
- Schuldt A. J., Adams J. H., Davidson C. M., Micklem D. R., Haseloff J., St Johnston D., Brand A. H. Miranda mediates asymmetric protein and RNA localization in the developing nervous system. Genes Dev. 1998 Jun 15;12(12):1847–1857. doi: 10.1101/gad.12.12.1847. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Siomi M. C., Zhang Y., Siomi H., Dreyfuss G. Specific sequences in the fragile X syndrome protein FMR1 and the FXR proteins mediate their binding to 60S ribosomal subunits and the interactions among them. Mol Cell Biol. 1996 Jul;16(7):3825–3832. doi: 10.1128/mcb.16.7.3825. [DOI] [PMC free article] [PubMed] [Google Scholar]
- St Johnston D. The intracellular localization of messenger RNAs. Cell. 1995 Apr 21;81(2):161–170. doi: 10.1016/0092-8674(95)90324-0. [DOI] [PubMed] [Google Scholar]
- Wickham L., Duchaîne T., Luo M., Nabi I. R., DesGroseillers L. Mammalian staufen is a double-stranded-RNA- and tubulin-binding protein which localizes to the rough endoplasmic reticulum. Mol Cell Biol. 1999 Mar;19(3):2220–2230. doi: 10.1128/mcb.19.3.2220. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Wu S., Kumar K. U., Kaufman R. J. Identification and requirement of three ribosome binding domains in dsRNA-dependent protein kinase (PKR). Biochemistry. 1998 Sep 29;37(39):13816–13826. doi: 10.1021/bi981472h. [DOI] [PubMed] [Google Scholar]
- Zhu S., Romano P. R., Wek R. C. Ribosome targeting of PKR is mediated by two double-stranded RNA-binding domains and facilitates in vivo phosphorylation of eukaryotic initiation factor-2. J Biol Chem. 1997 May 30;272(22):14434–14441. doi: 10.1074/jbc.272.22.14434. [DOI] [PubMed] [Google Scholar]
