Abstract
The human NUDT12 Nudix hydrolase has been expressed in insect cells from a baculovirus vector as a His-tagged recombinant protein. In vitro, it efficiently hydrolyses NAD(P)H to NMNH and AMP (2',5'-ADP), and diadenosine diphosphate to AMP. It also has activity towards NAD(P)(+), ADP-ribose and diadenosine triphosphate. K (m) values for NADH, NADPH and NAD(+) are 11, 16 and 190 microM and k (cat) values are 11, 16 and 10.5 s(-1) respectively. Thus, like other NADH diphosphatases of the Nudix family, NUDT12 has a marked substrate preference for the reduced nicotinamide nucleotides. Optimal activity was supported by 50 microM Mn(2+) ions in vitro, with 3-fold lower activity at 0.4 mM Mg(2+). Expression of NUDT12 as a C-terminal fusion to green fluorescent protein revealed that it was targeted to peroxisomes by the C-terminal tripeptide PNL acting as a novel type 1 peroxisomal targeting signal. Deletion of PNL resulted in diffuse cellular fluorescence. In addition, C-terminal, but not N-terminal, fusions with or without the PNL signal accumulated in large, unidentified cytoplasmic structures. NUDT12 may act to regulate the concentration of peroxisomal nicotinamide nucleotide cofactors required for oxidative metabolism in this organelle.
Full Text
The Full Text of this article is available as a PDF (223.5 KB).
Selected References
These references are in PubMed. This may not be the complete list of references from this article.
- AbdelRaheim S. R., Cartwright J. L., Gasmi L., McLennan A. G. The NADH diphosphatase encoded by the Saccharomyces cerevisiae NPY1 nudix hydrolase gene is located in peroxisomes. Arch Biochem Biophys. 2001 Apr 1;388(1):18–24. doi: 10.1006/abbi.2000.2268. [DOI] [PubMed] [Google Scholar]
- AbdelRaheim Salama R., McLennan Alexander G. The Caenorhabditis elegans Y87G2A.14 Nudix hydrolase is a peroxisomal coenzyme A diphosphatase. BMC Biochem. 2002 Mar 27;3:5–5. doi: 10.1186/1471-2091-3-5. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Bessman M. J., Frick D. N., O'Handley S. F. The MutT proteins or "Nudix" hydrolases, a family of versatile, widely distributed, "housecleaning" enzymes. J Biol Chem. 1996 Oct 11;271(41):25059–25062. doi: 10.1074/jbc.271.41.25059. [DOI] [PubMed] [Google Scholar]
- Caffrey J. J., Safrany S. T., Yang X., Shears S. B. Discovery of molecular and catalytic diversity among human diphosphoinositol-polyphosphate phosphohydrolases. An expanding Nudt family. J Biol Chem. 2000 Apr 28;275(17):12730–12736. doi: 10.1074/jbc.275.17.12730. [DOI] [PubMed] [Google Scholar]
- Canales J., Pinto R. M., Costas M. J., Hernández M. T., Miró A., Bernet D., Fernández A., Cameselle J. C. Rat liver nucleoside diphosphosugar or diphosphoalcohol pyrophosphatases different from nucleotide pyrophosphatase or phosphodiesterase I: substrate specificities of Mg(2+)-and/or Mn(2+)-dependent hydrolases acting on ADP-ribose. Biochim Biophys Acta. 1995 Jan 19;1246(2):167–177. doi: 10.1016/0167-4838(94)00191-i. [DOI] [PubMed] [Google Scholar]
- Cartwright J. L., Gasmi L., Spiller D. G., McLennan A. G. The Saccharomyces cerevisiae PCD1 gene encodes a peroxisomal nudix hydrolase active toward coenzyme A and its derivatives. J Biol Chem. 2000 Oct 20;275(42):32925–32930. doi: 10.1074/jbc.M005015200. [DOI] [PubMed] [Google Scholar]
- Dobrzanska Marta, Szurmak Blanka, Wyslouch-Cieszynska Aleksandra, Kraszewska Elzbieta. Cloning and characterization of the first member of the Nudix family from Arabidopsis thaliana. J Biol Chem. 2002 Oct 23;277(52):50482–50486. doi: 10.1074/jbc.M205207200. [DOI] [PubMed] [Google Scholar]
- Dunn C. A., O'Handley S. F., Frick D. N., Bessman M. J. Studies on the ADP-ribose pyrophosphatase subfamily of the nudix hydrolases and tentative identification of trgB, a gene associated with tellurite resistance. J Biol Chem. 1999 Nov 5;274(45):32318–32324. doi: 10.1074/jbc.274.45.32318. [DOI] [PubMed] [Google Scholar]
- Erdmann R., Veenhuis M., Kunau W. H. Peroxisomes: Organelles at the crossroads. Trends Cell Biol. 1997 Oct;7(10):400–407. doi: 10.1016/S0962-8924(97)01126-4. [DOI] [PubMed] [Google Scholar]
- Fisher David I., Safrany Stephen T., Strike Peter, McLennan Alexander G., Cartwright Jared L. Nudix hydrolases that degrade dinucleoside and diphosphoinositol polyphosphates also have 5-phosphoribosyl 1-pyrophosphate (PRPP) pyrophosphatase activity that generates the glycolytic activator ribose 1,5-bisphosphate. J Biol Chem. 2002 Oct 4;277(49):47313–47317. doi: 10.1074/jbc.M209795200. [DOI] [PubMed] [Google Scholar]
- Frick D. N., Bessman M. J. Cloning, purification, and properties of a novel NADH pyrophosphatase. Evidence for a nucleotide pyrophosphatase catalytic domain in MutT-like enzymes. J Biol Chem. 1995 Jan 27;270(4):1529–1534. doi: 10.1074/jbc.270.4.1529. [DOI] [PubMed] [Google Scholar]
- Gasmi L., McLennan A. G. The mouse Nudt7 gene encodes a peroxisomal nudix hydrolase specific for coenzyme A and its derivatives. Biochem J. 2001 Jul 1;357(Pt 1):33–38. doi: 10.1042/0264-6021:3570033. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Johnston J. A., Ward C. L., Kopito R. R. Aggresomes: a cellular response to misfolded proteins. J Cell Biol. 1998 Dec 28;143(7):1883–1898. doi: 10.1083/jcb.143.7.1883. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Kopito R. R. Aggresomes, inclusion bodies and protein aggregation. Trends Cell Biol. 2000 Dec;10(12):524–530. doi: 10.1016/s0962-8924(00)01852-3. [DOI] [PubMed] [Google Scholar]
- Lametschwandtner G., Brocard C., Fransen M., Van Veldhoven P., Berger J., Hartig A. The difference in recognition of terminal tripeptides as peroxisomal targeting signal 1 between yeast and human is due to different affinities of their receptor Pex5p to the cognate signal and to residues adjacent to it. J Biol Chem. 1998 Dec 11;273(50):33635–33643. doi: 10.1074/jbc.273.50.33635. [DOI] [PubMed] [Google Scholar]
- Leslie Nick R., McLennan Alexander G., Safrany Stephen T. Cloning and characterisation of hAps1 and hAps2, human diadenosine polyphosphate-metabolising Nudix hydrolases. BMC Biochem. 2002 Jul 16;3:20–20. doi: 10.1186/1471-2091-3-20. [DOI] [PMC free article] [PubMed] [Google Scholar]
- McLennan A. G. The MutT motif family of nucleotide phosphohydrolases in man and human pathogens (review). Int J Mol Med. 1999 Jul;4(1):79–89. doi: 10.3892/ijmm.4.1.79. [DOI] [PubMed] [Google Scholar]
- Meyerdierks A., Denecke B., Rohde M., Taparowsky E. J., Böttger E. C. A cytoplasmic structure resembling large protein aggregates induced by interferons. J Histochem Cytochem. 1999 Feb;47(2):169–182. doi: 10.1177/002215549904700206. [DOI] [PubMed] [Google Scholar]
- Safrany S. T., Ingram S. W., Cartwright J. L., Falck J. R., McLennan A. G., Barnes L. D., Shears S. B. The diadenosine hexaphosphate hydrolases from Schizosaccharomyces pombe and Saccharomyces cerevisiae are homologues of the human diphosphoinositol polyphosphate phosphohydrolase. Overlapping substrate specificities in a MutT-type protein. J Biol Chem. 1999 Jul 30;274(31):21735–21740. doi: 10.1074/jbc.274.31.21735. [DOI] [PubMed] [Google Scholar]
- Schrader M., Baumgart E., Völkl A., Fahimi H. D. Heterogeneity of peroxisomes in human hepatoblastoma cell line HepG2. Evidence of distinct subpopulations. Eur J Cell Biol. 1994 Aug;64(2):281–294. [PubMed] [Google Scholar]
- Sedgwick S. G., Smerdon S. J. The ankyrin repeat: a diversity of interactions on a common structural framework. Trends Biochem Sci. 1999 Aug;24(8):311–316. doi: 10.1016/s0968-0004(99)01426-7. [DOI] [PubMed] [Google Scholar]
- Singh A. K., Dobashi K., Gupta M. P., Asayama K., Singh I., Orak J. K. Manganese superoxide dismutase in rat liver peroxisomes: biochemical and immunochemical evidence. Mol Cell Biochem. 1999 Jul;197(1-2):7–12. doi: 10.1023/a:1006848113499. [DOI] [PubMed] [Google Scholar]
- Xu W., Dunn C. A., Bessman M. J. Cloning and characterization of the NADH pyrophosphatases from Caenorhabditis elegans and Saccharomyces cerevisiae, members of a Nudix hydrolase subfamily. Biochem Biophys Res Commun. 2000 Jul 5;273(2):753–758. doi: 10.1006/bbrc.2000.2999. [DOI] [PubMed] [Google Scholar]
- de Hoop M. J., Ab G. Import of proteins into peroxisomes and other microbodies. Biochem J. 1992 Sep 15;286(Pt 3):657–669. doi: 10.1042/bj2860657. [DOI] [PMC free article] [PubMed] [Google Scholar]