Chloe Connan
Chloe Connan
1Université Paris-Saclay, INRAE, MetaGenoPolis (MGP), Jouy-en-Josas, France
1,#,
Sébastien Fromentin
Sébastien Fromentin
1Université Paris-Saclay, INRAE, MetaGenoPolis (MGP), Jouy-en-Josas, France
1,#,
Mourad Benallaoua
Mourad Benallaoua
2Department of Gastroenterology, Avicenne Hospital, Assistance Publique-Hôpitaux de Paris, Université de Paris, Bobigny, France
2,
Anne-Sophie Alvarez
Anne-Sophie Alvarez
1Université Paris-Saclay, INRAE, MetaGenoPolis (MGP), Jouy-en-Josas, France
1,
Nicolas Pons
Nicolas Pons
1Université Paris-Saclay, INRAE, MetaGenoPolis (MGP), Jouy-en-Josas, France
1,
Benoît Quinquis
Benoît Quinquis
1Université Paris-Saclay, INRAE, MetaGenoPolis (MGP), Jouy-en-Josas, France
1,
Christian Morabito
Christian Morabito
1Université Paris-Saclay, INRAE, MetaGenoPolis (MGP), Jouy-en-Josas, France
1,
Julie-Anne Nazare
Julie-Anne Nazare
3Univ-Lyon, CarMeN Laboratory, Inserm, Inrae, Université Claude Bernard Lyon-1, Lyon, France
3,
Elise Borezée-Durant
Elise Borezée-Durant
1Université Paris-Saclay, INRAE, MetaGenoPolis (MGP), Jouy-en-Josas, France
4Université Paris-Saclay, INRAE, AgroParisTech, Micalis Institute, Jouy-en-Josas, France
1,4;
Le French Gut Consortium5,
Florence Haimet
Florence Haimet
1Université Paris-Saclay, INRAE, MetaGenoPolis (MGP), Jouy-en-Josas, France
6INRAE Mica division, Jouy-en-Josas, France
1,6,
Stanislav Dusko Ehrlich
Stanislav Dusko Ehrlich
1Université Paris-Saclay, INRAE, MetaGenoPolis (MGP), Jouy-en-Josas, France
1,
Karine Valeille
Karine Valeille
1Université Paris-Saclay, INRAE, MetaGenoPolis (MGP), Jouy-en-Josas, France
1,
Alexandre Cavezza
Alexandre Cavezza
1Université Paris-Saclay, INRAE, MetaGenoPolis (MGP), Jouy-en-Josas, France
1,
Hervé Blottière
Hervé Blottière
1Université Paris-Saclay, INRAE, MetaGenoPolis (MGP), Jouy-en-Josas, France
7Nantes Université, INRAE, UMR 1280, PhAN, Nantes, France
1,7,
Patrick Veiga
Patrick Veiga
1Université Paris-Saclay, INRAE, MetaGenoPolis (MGP), Jouy-en-Josas, France
4Université Paris-Saclay, INRAE, AgroParisTech, Micalis Institute, Jouy-en-Josas, France
1,4,
Mathieu Almeida
Mathieu Almeida
1Université Paris-Saclay, INRAE, MetaGenoPolis (MGP), Jouy-en-Josas, France
1,
Joël Doré
Joël Doré
1Université Paris-Saclay, INRAE, MetaGenoPolis (MGP), Jouy-en-Josas, France
4Université Paris-Saclay, INRAE, AgroParisTech, Micalis Institute, Jouy-en-Josas, France
1,4,
Robert Benamouzig
Robert Benamouzig
2Department of Gastroenterology, Avicenne Hospital, Assistance Publique-Hôpitaux de Paris, Université de Paris, Bobigny, France
2,✉
1Université Paris-Saclay, INRAE, MetaGenoPolis (MGP), Jouy-en-Josas, France
2Department of Gastroenterology, Avicenne Hospital, Assistance Publique-Hôpitaux de Paris, Université de Paris, Bobigny, France
3Univ-Lyon, CarMeN Laboratory, Inserm, Inrae, Université Claude Bernard Lyon-1, Lyon, France
4Université Paris-Saclay, INRAE, AgroParisTech, Micalis Institute, Jouy-en-Josas, France
5see Authors' Contributions
6INRAE Mica division, Jouy-en-Josas, France
7Nantes Université, INRAE, UMR 1280, PhAN, Nantes, France
✉Corresponding Author: Robert Benamouzig
robert.benamouzig@aphp.fr
Received 2025 Jul 4; Accepted 2025 Jul 4; Collection date 2025.
©Chloe Connan, Sébastien Fromentin, Mourad Benallaoua, Anne-Sophie Alvarez, Nicolas Pons, Benoît Quinquis, Christian Morabito, Julie-Anne Nazare, Elise Borezée-Durant, Le French Gut Consortium, Florence Haimet, Stanislav Dusko Ehrlich, Karine Valeille, Alexandre Cavezza, Hervé Blottière, Patrick Veiga, Mathieu Almeida, Joël Doré, Robert Benamouzig. Originally published in JMIR Research Protocols (https://www.researchprotocols.org), 14.07.2025.
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