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. 2025 Aug 13;20(8):e0329390. doi: 10.1371/journal.pone.0329390

The EuropaBON Stakeholder Dashboard: A dynamic web application to map Europe’s biodiversity community

Christian Langer 1,2,*, Jessica Junker 1,2,3,4, Marek Giergiczny 1,2, Ian McCallum 5, Ivelina Georgieva 5, Henrique Miguel Pereira 1,2,6
Editor: Florian Borgwardt7
PMCID: PMC12349692  PMID: 40802850

Abstract

Europe’s biodiversity faces increasing pressure from climate change, pollution, and habitat loss, while governments struggle to sustain the monitoring efforts required to respond effectively to these challenges. Addressing this gap calls for a coordinated and inclusive approach that brings together all relevant biodiversity stakeholders to co-design a robust European biodiversity monitoring system. To support this, the Europa Biodiversity Observation Network (EuropaBON) has established one of the most comprehensive biodiversity stakeholder networks in Europe. To analyse this community and support evidence-based improvements, we developed the EuropaBON Stakeholder Dashboard – a dynamic, interactive web application that maps and visualises the EuropaBON stakeholder network’s structure in real-time. Accessible at https://europabon.org/dashboard, the dashboard enables users to explore stakeholder connections across three key dimensions: occupational sector, realm (terrestrial, freshwater, marine), and geographic region. It displays detailed network graphs, an interactive map, and summary statistics that highlight institutional positions in biodiversity data flows (e.g., data users, data providers, or both), levels of participation in EuropaBON activities, and connections to key EU projects and infrastructures. Users can identify the most central and active institutions in the network, filter and download data, and assess coverage across different thematic areas and regions. This tool supports both researchers and policymakers by offering an up-to-date overview of who is involved in biodiversity monitoring across Europe, where collaborations exist, and where further engagement is needed. By combining technological integration with stakeholder participation, the EuropaBON Stakeholder Dashboard enhances transparency, promotes inclusivity, and contributes to a more coordinated and effective biodiversity monitoring landscape in Europe.

Introduction

In this paper, the term EuropaBON refers, depending on context, to (a) the EuropaBON project and its associated aims and activities; (b) the integrated biodiversity monitoring system being developed by the project for Europe; or (c) the network of stakeholders and members engaged throughout the project. Where relevant, we specify ‘project’, ‘system’, or ‘network’ to distinguish between these closely related but distinct components. This distinction is important in light of the broader context in which EuropaBON operates. One of the main challenges facing global biodiversity research lies in the scarcity and uneven distribution or fragmentation of unbiased data across both temporal and spatial dimensions and taxa [1]. European biodiversity data, while plentiful, are dispersed among various organisations, projects and individuals, hindering a comprehensive and coherent understanding of ecological patterns. The necessity for robust and representative biodiversity data is underscored by the imperative to effectively implement and assess policies aimed at conserving biodiversity and ecosystems [2]. To address this challenge, a collaborative approach is essential. By uniting biodiversity stakeholders, the Europa Biodiversity Observation Network (henceforth EuropaBON) project aimed to collectively design a monitoring framework that not only integrated existing data but also addressed the gaps in coverage [3].

This joint effort has sought to build a unified and coherent biodiversity monitoring system for improving both the reliability and accessibility of biodiversity data – such as species occurrences, habitat condition, and population trends – ultimately enabling more informed conservation strategies and evidence-based policy decisions [4]. Several global and regional initiatives have emerged in recent years to coordinate biodiversity monitoring and foster data standardisation, with the Group on Earth Observations Biodiversity Observation Network (GEO BON) playing a central role at the global level. GEO BON provides a strategic framework for the development of Biodiversity Observation Networks (BONs) worldwide and promotes the use of Essential Biodiversity Variables (EBVs) to enhance data interoperability and policy relevance [5]. EBVs are designed to monitor biodiversity status and trends across multiple spatial and temporal scales. They serve as an intermediate layer between raw biodiversity data and policy indicators, facilitating improved access to policy-relevant information [6]. Regional and national Biodiversity Observation Networks (i.e., BONs), such as the Asia BON [7], the Americas BON [8], and national efforts like SANBI in South Africa [9], contribute to this global vision. The EuropaBON network serves as the European regional BON under GEO BON, aligning its monitoring design and stakeholder engagement strategy with these broader objectives. With nearly 1,600 registered members from 704 organisations across 72 countries (as of 13/09/2024), the EuropaBON network is one of the largest and most influential biodiversity communities in Europe. Although not yet implemented, network members (henceforth “members”) have been involved in every step of making recommendations- and proposing a design for the new European biodiversity monitoring system, from identifying user and policy needs, assessing existing European monitoring systems and identifying data gaps, to defining the Essential Biodiversity Variables (EBVs) to be monitored within the system. This new system is designed in such a way as to address multiple EU policies and reporting needs [10]. Assessing the impact of key contributors, measured through their level of connectedness within the network, their participation in EuropaBON project activities (e.g., workshops, surveys, consultations), and their involvement in shaping the structure of the monitoring framework, is crucial for understanding potential geographical or thematic biases embedded in the collaboratively designed system. These forms of impact reflect both influence on decision-making processes and the degree to which institutions are contributing knowledge, capacity, or data. Recognizing such biases is essential for creating a representative monitoring system that reflects the diversity of stakeholder perspectives and ensures broad relevance and uptake across Europe. To enhance transparency, stakeholder engagement, and adaptability, we developed an interactive web-based dashboard (https://europabon.org/dashboard/) that allows users to explore the European biodiversity community, its key actors, and their connections. The dashboard visualises stakeholder relationships across three key dimensions: occupational sector (academia, NGO, governmental organisation, private sector, citizen science, other), ecological realm (terrestrial, freshwater, marine), and EU region as defined by the United Nations geoscheme.

The main objective of this study was to map the EuropaBON stakeholder network across these dimensions and identify gaps in geographic coverage, thematic focus, and areas of expertise. While previous efforts – such as the EU BON project – conducted limited and largely static analyses of institutional relationships [11], the EuropaBON project has advanced this work by offering a dynamic, continuously updated real-time tool for exploring network structure and engagement, drawing on the FAIR principles [12]. Unlike static, snapshot-based data sets that require manual updates and only provide a fixed view of data that can quickly become outdated, the dashboard ensures a continuous flow of data, automatic updates and interactive visualisations. Users are no longer limited to passively viewing the data, but can actively explore relationships, filter information and analyse trends in real time. This added layer of transparency and continuous self-assessment positions EuropaBON as a leading initiative that has contributed to building an inclusive, balanced and evolving biodiversity monitoring community.

Methods

Input data

The information provided by registered stakeholders (also referred to as members throughout the text) in the EuropaBON members portal [13], has served as the primary data source for developing the dashboard (https://europabon.org/dashboard) and conducting the network analysis. Membership grew rapidly in the first year following the network’s establishment, partly due to three stakeholder conferences held in 2021, and continued to increase, albeit at a slower rate, throughout 2022 and 2023 (S1 Fig). Membership recruitment primarily took place through EuropaBON events, as participation was limited to registered members. Membership grew organically through event announcements and social media outreach. In addition, the project was widely recognized across Europe, leading to a high number of registrations from a broad range of stakeholders. While the database includes many key biodiversity actors, we acknowledge that some notable organisations, such as the Natural History Museum in London, are not represented. To ensure network sustainability, the members’ portal and the associated dashboard were designed to be maintained for at least five years beyond the project’s duration (until 2029). Members provided essential information via an online registration form (https://europabon.org/members/register/index), with the full list of questions asked during the registration process available in S1 File. Members are able to update their information at any time by logging into the EuropaBON members portal [13]. Any change in the portal, such as the registration of a new member or the modification of an existing user profile (e.g., affiliation, data provision or data usage) is reflected in the dashboard. The main component in the dashboard, the network graph, is based on institutions (henceforth referred to as “nodes”) and their data exchange interactions (henceforth referred to as “edges”). This study was conducted in accordance with the EuropaBON Data Privacy and Use Policy, available from the EuropaBON website, which outlines the terms and conditions governing the collection, access, and use of stakeholder data.

Data processing

Following a clean-up of the registration form’s input fields – examples of which are provided in S2 File – we grouped individual member entries by their affiliated institution (see S3 File) to ensure consistent institutional representation on the dashboard. If an institution has sub-institutions, these are not explicitly grouped together in the data. For example, GBIF and GBIF Spain are listed as separate entities. This distinction is maintained for two reasons: first, their differing geographical locations – GBIF is based in Denmark, while GBIF Spain operates under CSIC in Spain; and second, the dashboard reflects the information exactly as provided by individual members during registration. Modifying these entries could have distorted the actual output. Individual members’ information is not disclosed in the dashboard. To provide the data for the dashboard, we structured the grouped table into a JSON-based API (Application Programming Interface). JSON (JavaScript Object Notation) is an open standard file format that uses human-readable text to store and transmit data objects consisting of name-value pairs (e.g., “id”: “1”, where the name is “id” and the value is “1”). APIs facilitate communication via designated API endpoints, which are specific URLs for sending requests and receiving responses. The API endpoints are available in the S4 File. The API endpoint https://europabon.org/dashboard/api/nodes summarises the nodes and also contains information about the connections between the individual nodes, represented by the edges in the network graph. Each node is assigned an ID and corresponding attributes (e.g., label, country, scope, group, etc.). The S5 File shows an example of the attributes for ID 1. The attributes contain information about occupational sector (academia, NGO, governmental organisation, private sector, citizen science, other), realm (terrestrial, freshwater, marine, cross-realm) or geographic region (Northern Europe, Western Europe, Eastern Europe, Southern Europe, and non-European regions). If a node is connected to several realms (e.g., Terrestrial, Freshwater), it is referred to as “cross-realm”. The nodes also contain values for the activity level and the data exchange interactions, i.e., the position in the data flow (biodiversity data user, biodiversity data provider, or both). If multiple members from the same institution indicated different roles in the biodiversity data flow (e.g., one as a data user, another as a provider), their responses were combined to classify the institution accordingly (e.g., as both user and provider). Further details on centrality, activity level, and position in the data flow are provided in the following section.

Node properties: Centrality, activity level and position in the data flow

We used two functions to calculate network centrality: 1) degree centrality and 2) page rank. Both functions were calculated with the JavaScript library Cytoscape.js [14]. Degree centrality is a measure utilised in network analysis to evaluate the significance of a node within a network. It relies on the concept of counting connections or edges. Put simply, the degree centrality of a node corresponds to the number of edges connected to it. Nodes exhibiting high degree centrality possess numerous connections, indicating their greater centrality or influence within the network. A highly central network member therefore has many connections to other members. Degree centrality is frequently employed to pinpoint key nodes in a network, such as hubs or highly connected individuals in social networks, critical infrastructure nodes in transportation or communication networks, or highly cited papers or authors in citation networks.

Page rank, which is used to evaluate the importance or relevance of web pages on the internet, can be regarded as equivalent to Eigenvector centrality in the context of network analysis. It measures the influence of a node in a connected network. This measure is based not only on the node’s direct connections, but also on the centrality of its neighbours. Nodes with higher page rank values are those that are connected to other highly central nodes and vice versa. An impactful network member therefore describes a member that has many connections with highly centralised members.

Activity levels were determined based on the number of EuropaBON project events (n = 17) that a network member participated in. These events included workshops, conferences, webinars, interviews, surveys, social media campaigns, and review processes (please see the EuropaBON website, https://europabon.org, for more details). Members were informed about these events via the EuropaBON website and social media channels (X, https://x.com/EuropaBon_H2020, and Facebook, https://www.facebook.com/EuropaBONH2020). While scheduling conflicts were not accounted for in the analysis, we recognize that availability constraints may have influenced participation. Additionally, funding was provided to support the involvement of certain members, thereby influencing the level of engagement of those members. Activity levels were assigned as absolute values (0–17) and categorized into three groups: 0 = none, 1 = low (participation in up to 8 events), and 2 = high (participation in more than 8 events). On the dashboard, different colors indicate activity levels: the darker the fill color of each symbol, the more activities the node participated in.

Each node was assigned a position in the data flow (i.e., biodiversity data user, biodiversity data provider, or both) based on the information provided by each member during the registration process (S1 File). On the dashboard, the visualisation uses distinct shapes to represent different member institutions: circles for data users, triangles for data providers, and diamonds for those who serve as both. Additionally, a separate group, “N.A.” (Not Available), includes nodes that are not registered members but were identified as data users or providers by members. In the network graph, these non-member nodes are displayed as grey dots.

Web application architecture

The dashboard has been developed as a fully responsive JavaScript [15] web application using technologies that are licensed as free software using jQuery [16], the Bootstrap 4 framework [17] and various JavaScript libraries, such as Leaflet JS [18], Highcharts [19] and datatables.js [20], a plug-in for the JavaScript library jQuery. The network graph and centrality calculations were generated using Cytoscape.js [14], an open-source JavaScript library for graph visualisation, employing a force-directed FCOSE [21] layout to identify clusters and bridges (S6 File). The API interface between the web application and the server was developed in PHP 8 [22], which runs on the members portal’s [13] existing PHP/MariaDB stack using MariaDB v10.6.5 [23] as the database system. The entire website, including the database, is hosted in a VM Docker environment at iDiv (Germany). The deployed website uses Apache web server technology.

The entire source code of the dashboard is available in the EuropaBON GitHub repository (https://github.com/EuropaBON/stakeholder-dashboard), and an archived version has been made publicly available on Zenodo [24]. Further technical specifications are available in the S7 File. For an overview of the web application architecture, see Fig 1. One limitation of the JavaScript library Cytoscape.js was its restricted functionality for advanced statistical analyses. To explore node relationships in more detail, we conducted additional network data analyses outside Cytoscape, which will be presented in the next section.

Fig 1. Web application architecture.

Fig 1

Modified from Velásquez-Tibatá et al. [25], PLOS ONE, Fig 3. Licensed under CC BY 4.0. Source: https://doi.org/10.1371/journal.pone.0214522.g003.

Statistical model of network data

This section describes the statistical methods used to examine the factors associated with degree centrality and the number of activities in which EuropaBON members participated. Since both outcomes are count variables (i.e., non-negative integers), we considered a range of count regression models [26,27]. After evaluating several alternatives, we selected the negative binomial regression model as the most appropriate. This model accounts for overdispersion – where the variance exceeds the mean – a common feature in count data that can compromise the reliability of standard Poisson regression by underestimating standard errors and overstating significance levels. The negative binomial model mitigates this issue by incorporating an additional dispersion parameter, offering a more flexible and robust alternative to the standard Poisson model [28]. In the estimated model, the variation in the number of events a member institution participated in, or alternatively, the number of connections between members and non-member participants in EuropaBON (degree centrality), was explained by a set of member-specific characteristics. Using the information provided by individuals in the registration process (S1 File), the following variables were included: position in the data flow, occupational sector, geographical region (distinguishing between countries within Europe that are members of the OECD – the Organisation for Economic Co-operation and Development – and non-OECD countries outside of Europe), realm, and EU directives. The directives variable was based on responses to the question, “Which of these EU directives is of most interest to your work?”, which was included in the registration process to better understand the policy contexts informing participants’ expertise and focus areas. Although the responses reflect individual-level perspectives rather than institutional mandates, we included this variable as a proxy for the regulatory environment in which the individual operates. It serves as an indicator of exposure to, or engagement with, EU policy instruments – factors likely to shape the participant’s motivation or capacity to engage in EuropaBON activities. While we recognize the potential for reverse causality, we argue that prior exposure to EU directives is more likely to represent a pre-existing condition that influences an individual’s engagement, rather than being a direct outcome of their participation. Differentiating between OECD and non-OECD countries outside Europe allowed us to account for potential differences in institutional capacity and access to biodiversity infrastructure, which may affect participation and connectedness within the network. The parameter estimates obtained from the negative binomial regression model were further utilized to compute marginal effects [29], with standard errors calculated using the Delta Method [28]. Marginal effects provide a quantitative interpretation of the model results by estimating the change in the expected value of the dependent variable associated with a one-unit increase in a specific explanatory variable, while holding all other variables constant [30]. This approach is particularly useful for understanding the practical significance of the explanatory variables, as it translates negative binomial regression coefficients into more interpretable units.

Results

Dashboard components

All results presented in this study are based on data available as of 22 May 2024. The dynamic and interactive dashboard features multiple components that highlight institutions actively shaping the future European biodiversity monitoring system, along with their connections to key EU projects and infrastructures. The dashboard includes interactive network graphs, charts, and tables (Fig 2 shows a subset of the components). Its main feature is a network graph displaying stakeholders across three dimensions: occupational sector (academia, NGO, governmental organisation, private sector, citizen science, other), realm (terrestrial, freshwater, marine, cross-realm), and EU region (Northern Europe, Western Europe, Eastern Europe, Southern Europe, and non-European regions). Graph connections represent data-sharing interactions, indicating whether an institution is a biodiversity data user, data provider, or both. The outlines of the nodes are color-coded to consistently represent these dimensions. Additional dashboard components include: the total count of institutions and connections in the network, the total count of institutions grouped by dimension, the most connected/central institutions, dimension by centrality and number of events, connections to key EU projects and infrastructures, the most connected EU projects and infrastructures, the total count of EU projects and infrastructures grouped by category, and a data table that summarises all data per institution. The dashboard also offers search functionality, geographic mapping of institutions, and data export options. All network graphs, charts, and tables are dynamically updated using the latest EuropaBON member data [13].

Fig 2. Subset of the dashboard components.

Fig 2

(1) Search box; (2) Total count of nodes and edges; (3) Show network by dimension (occupational sector, realm, EU region); (4) Network graph; (5) Legend with export option; (6) Total nodes by dimension; (7) 10 most connected/central nodes; (8) Dimension by centrality; (9) Dimension by centrality and number of events. Map tiles in panel (3) are © OpenStreetMap contributors, © CARTO, used under the Creative Commons Attribution 4.0 license (CC BY 4.0).

EuropaBON’s network

The network currently includes 985 member institutions (i.e., nodes) and 2671 connections (i.e., edges). These are represented by members (n = 590), as well as non-members (n = 395) that have been defined as data providers, -users, or both during the registration process (Table 1). These non-members make up 30% (n = 242) of all of the connections to institutions currently registered in the network.

Table 1. List of the top-ten non-member institutions with the largest degree centrality values.

Non-member institution Degree centrality
Ocean Biodiversity Information System (OBIS) 39
EMODnet 20
Copernicus 16
Convention on Biological Diversity (CBD) 15
National Center for Biotechnology Information (NCBI) 13
National Biodiversity Network (NBN) 13
GenBank 11
NOAA Fisheries 11
European Ocean Biodiversity Information System (EurOBIS) 11
Barcode of Life Data System (BOLD) 10

The majority of member institutions are from the academic sector (n = 278), followed (in order of descending abundance) by government organisations (n = 126), non-governmental organisations (NGOs) (n = 63), representatives of the private sector (n = 46), and citizen scientists (n = 7). While only a small proportion identified their primary affiliation as citizen science, it is possible that more individuals involved in citizen science chose to register under another institutional category, such as academia or NGOs. Almost half (48%) of members indicated that their work spans more than one realm (n = 269), closely followed by members who work in the terrestrial realm (n = 196). Only 12% (n = 66) and 4% (n = 26) of members reported to work on marine and freshwater species/ecosystems, respectively. In terms of geographic biases, Eastern European members are clearly underrepresented in the network, with only 8% (n = 44) of all registrants. This is notably low given that Eastern Europe accounts for approximately 21% of EU member states [31]. Most members and their institutions are located in Western Europe (n = 166), closely followed by Southern (n = 156), and Northern Europe (n = 108). A total of 82 members are from outside Europe. Data users and providers are relatively balanced across sectors; however, NGOs and members from the private industry sector predominantly use data (S2 Fig).

EuropaBON’s stakeholders

The three most connected (i.e., highest centrality) and central (highest page rank) members were the Global Biodiversity Information Facility (GBIF), the European Commission, and the European Environment Agency (EEA) (Fig 3 and Table 2). These three institutions made up > 60% of all connections in the network. When we mapped EU projects and key EU infrastructures that members reported to actively participate in, we found that the majority (34%) were research infrastructures, research networks, or research projects, followed by coordination and/or support networks (19%), and biodiversity tools and technologies (15%). Data repositories (9%), biodiversity observation frameworks (9%), biodiversity monitoring schemes (5%), and intergovernmental organisations/panels (3%), were reported less frequently. The top five most connected EU projects and key infrastructures (in terms of their number of connections) included LifeWatch ERIC (https://lifewatch-eric.openaire.eu), EuropaBON (https://europabon.org), eLTER (https://elter-ri.eu), DiSSCo (https://www.dissco.eu), and Biodiversa+ (https://www.biodiversa.eu) (Fig 4).

Fig 3. The network visualised by the occupational sector.

Fig 3

The colours represent clusters classified by different occupational sectors, while the size of each node indicates its degree of centrality.

Table 2. List of the top-ten members with the largest degree centrality and page rank values. Note that degree centrality and page rank values do not display the same rank order for all institutions.

Member institution Degree centrality Page rank
Global Biodiversity Information Facility 214 0,121
European Commission 117 0.064
European Environment Agency 102 0.041
Joint Research Centre 46 0.021
Biodiversa+ 43 0.019
International Union for the Conservation of Nature 36 0.012
EUROSTAT 34 0.020
LifeWatch European Research Infrastructure Consortium 33 0.011
Birdlife International 29 0.023
National Aeronautics and Space Administration 28 0.015

Fig 4. Connections between EU projects and key EU infrastructures that members reported to be actively involved in/associated with.

Fig 4

The size of the outer bars represents the number of connections each project or infrastructure has with others. The colours facilitate visualisation but do not have any specific meaning.

Stakeholder impact and engagement

In the context of this study, stakeholder impact refers to the degree centrality of the institution with which the registered EuropaBON network member is affiliated. Engagement denotes the number of EuropaBON project events/ activities the member participated in. The calculated marginal effects, along with their corresponding 95% confidence intervals, for the two models – explaining impact and engagement are presented in S3 Fig.

Members who acted as both data providers and data users, as well as those who solely acted as data providers, had significantly more connections compared to those who solely acted as data users. Specifically, these groups had, on average, 2.4 and 1.3 more connections than data users, with both effects being statistically significant at the 0.05 level. Members from the government sector were significantly more connected than those in academia, while NGOs, the private sector, and citizen scientists showed no difference in connectedness compared to academia. Members not grouped into these sectors had significantly more connections, driven by GBIF, which had the most connections (n = 214). Members in Eastern and Southern Europe, and non-OECD countries outside Europe, were less connected on average than those in Western Europe. Member institutions working across realms were significantly better connected than those focusing on terrestrial species or ecosystems, while there was no difference in connectedness among terrestrial, marine, and freshwater realms.

Additionally, the number of EU directives associated with a member’s activities was a good predictor of centrality, with each additional directive corresponding to a 0.16 increase in the number connections. Regarding the number of activities in which members participated in EuropaBON and thus influenced the design of Europe’s new biodiversity and ecosystem services monitoring program, those acting as both data user and data provider were involved in significantly more activities than solely data users. Institutions from the academic sector were actively involved in most activities, and the private sector was significantly underrepresented in EuropaBON’s stakeholder events. Members from institutions based in Eastern Europe and countries outside Europe (both non-OECD and OECD) participated in significantly fewer events compared to those located in Western Europe. Members whose work focused on the marine realm participated in significantly fewer events compared to those in the terrestrial realm. A positive relationship was observed between the number of EU directives and the number of events in which an organisation participated.

Discussion

This research highlights the critical importance of fostering an inclusive stakeholder community, both geographically and thematically, for shaping effective European biodiversity policy. While the EuropaBON network demonstrates strong connectivity across regions, sectors, and ecological realms, notable gaps persist, particularly in the participation of Eastern European actors and in the engagement of stakeholders from marine and freshwater ecosystems. At the core of the network, central institutions such as GBIF play a key role in facilitating data exchange and integration, underscoring the value of well-connected hubs within biodiversity data infrastructures [32]. However, rather than merely reaffirming GBIF’s centrality, this finding points to the need for greater redundancy and decentralisation, ensuring that no single node becomes a critical point of failure. Strengthening regional hubs or sector-specific platforms could help balance this centralisation and improve the resilience of the broader biodiversity knowledge infrastructure. Additionally, the network’s open-access dashboard, which follows the FAIR principles [12], offers significant potential for enhancing collaboration, transparency, and reusability. These findings carry important implications for emerging initiatives, most notably the EU Biodiversity Observation Coordination Centre (EBOCC), which is poised to build on the foundation laid by EuropaBON to advance coordinated biodiversity monitoring across Europe [33].

Inclusiveness and representation in the network

Our analysis shows that the EuropaBON members network is generally well connected across geographic regions, sectors, and thematic areas. However, there is clear potential to enhance the network’s overall resilience by strengthening links with underrepresented stakeholder groups – particularly those in Eastern European countries and the private sector, as well as actors working in marine and freshwater realms. The consistently low levels of participation from Eastern Europe stand out as a key gap that warrants targeted attention. This could be addressed through more focused outreach, such as organising meetings, conferences, and workshops directly within the region to foster local engagement. Likewise, closer interaction with the marine and freshwater communities would enrich the network by creating space for knowledge exchange on shared challenges, including data standardisation and funding mechanisms. Currently, institutions focusing on terrestrial ecosystems tend to be more active and better connected, highlighting a disparity that limits the network’s comprehensiveness. Yet this underrepresentation also presents a strategic opportunity: strengthening connections with marine and freshwater stakeholders could significantly broaden the network’s thematic scope. Notably, a large proportion of institutions are classified as “cross-realm,” either because data from multiple members within a single organisation were consolidated or because many institutions genuinely engage across multiple ecosystems [34]. This pattern reflects a broader shift toward interdisciplinary approaches in biodiversity research and practice. Enhancing engagement with currently underrepresented realms will therefore not only fill gaps but also align with the evolving nature of biodiversity work – ultimately making the network more balanced, inclusive, and effective.

Role of key institutions and central actors

Although our findings demonstrate that the EuropaBON network is generally well connected, there is room to improve links with Eastern Europe and increase collaboration with private companies. The network’s structure is characterized by strong connections between intergovernmental organisations (e.g., GBIF, EEA, Eurostat, JRC), academic institutions (e.g., universities), and government organisations (e.g., European Commission agencies). Rather than viewing these connections as static features, they should be leveraged strategically, for example, by empowering these central actors to mentor or partner with less connected institutions from underrepresented regions or realms. Among these, GBIF stands out as the most connected node by far, accounting for over 30% of all connections. This highlights GBIF’s central role as a global aggregator of biodiversity data and a longstanding hub for data sharing, standardisation, and integration across countries, institutions, and thematic areas. These findings align with those of Bingham et al. [11], who identified GBIF as the most connected actor in both global and European biodiversity informatics landscapes. Institutions in the academic (e.g., NIVA, ISPRA) and government sectors (e.g., EEA, JRC) are the most active in project-related events such as workshops, webinars, surveys, and interviews. This level of activity is not unexpected, as these entities often receive dedicated funding for such engagements. We recommend expanding the range of stakeholders involved in the network and suggest offering increased support for early-career professionals, who may otherwise lack the resources to participate in key meetings and events. Moreover, many of the most influential and well-connected actors, such as BIODIVERSA + , IPBES, eLTER, and LifeWatch ERIC, are themselves cross-realm or serve coordinating roles across multiple ecosystem types. These actors play a crucial role in bridging thematic gaps and highlight the value of integrative infrastructures in network development.

Implications for biodiversity monitoring and policy

Understanding the structure and composition of the stakeholder network is not an end in itself, but a crucial step toward improving its function and impact. By identifying underrepresented regions, sectors, and realms, targeted actions can be taken to diversify participation, strengthen weak connections, and foster more equitable collaboration. A more inclusive and better-connected network translates into more robust and representative biodiversity data. This is essential for setting conservation priorities, addressing monitoring gaps, and achieving practical outcomes. For example, engaging underrepresented regions such as Eastern Europe helps fill data gaps and better align national monitoring systems with EU-wide goals. Similarly, increased involvement from marine and freshwater experts will improve ecosystem-specific coverage and policy responsiveness. A well-connected stakeholder network also fosters trust, facilitates knowledge exchange, and promotes collaborative ownership of biodiversity initiatives. These factors are important for the long-term sustainability of initiatives like the EU Biodiversity Strategy for 2030 and for responding effectively to biodiversity loss. Looking ahead, the stakeholder network could serve not only as a resource for data mobilisation but also as a governance and decision-support platform, enabling more inclusive co-design and evaluation of biodiversity policy interventions.

Opportunities and limitations of the dashboard

The interactive dashboard developed in this project provides valuable insights into stakeholder relationships and enables users to identify gaps and opportunities for collaboration. The tool follows the FAIR principles [12] and is both machine-readable and reusable. Our open-source approach allows other networks, such as GEO BON or the Global Youth Biodiversity Network, to use, enhance, and build upon our framework. The dashboard infrastructure includes publicly accessible source code via GitHub, as well as a public API for programmatic access of the data. This allows other systems to directly connect with our network data. To support reuse and adaptation, additional guidance is available upon request, with technical maintenance ensured through 2029. However, ensuring the long-term value of the dashboard requires more than technical openness. Sustained funding and governance structures must be secured to guarantee regular updates, versioning, and quality control. This includes planning for a handover of dashboard maintenance to a permanent host institution, ideally within EBOCC or a related European research infrastructure. Without such planning, the dashboard risks becoming static or obsolete. The dashboard’s integration with other European and global platforms also remains limited. For true interoperability, more attention must be paid to aligning metadata standards, API protocols, and visualisation formats with those used by complementary systems such as GBIF, LifeWatch ERIC, and GEO BON. Establishing regular exchanges with these initiatives could help position the dashboard as a central node in the wider biodiversity informatics landscape.

Importantly, the EuropaBON stakeholder network remains open to new members. Individuals and institutions interested in joining are encouraged to get in touch via the official project website (www.europabon.org), where a registration form and contact details are available. New members are regularly integrated into the network and reflected in real time on the dashboard. This ensures that the network remains a dynamic and evolving infrastructure, responsive to new collaborations and expertise. Including this information is essential for demonstrating the long-term relevance, openness, and inclusivity of both the stakeholder network and the dashboard. Clear and sustained communication about how to join is essential not only for inclusivity but also for the operational validity of the dashboard as a living system. However, some technical limitations remain. With a current network size of approximately 1,000 nodes, rendering the graph in the browser takes around 15 seconds. This performance bottleneck is due to the browser-based nature of Cytoscape.js [14]. For larger networks, we therefore recommend conducting calculations server-side. Nevertheless, future improvements in JavaScript, such as enhanced parallelization and GPU support, could further improve performance.

Future directions and recommendations

The insights gained from this research may inform future initiatives, particularly the EU Biodiversity Observation Coordination Centre (EBOCC), recently launched as a call for tenders by the European Commission Directorate-General for Environment. EBOCC aims to pilot a coordinated biodiversity observation centre based on the EuropaBON proposal, with objectives including harmonised data collection, enhanced collaboration among key actors, support for policy-relevant indicators, and technical guidance to Member States. The stakeholder network and dashboard developed through EuropaBON could play a supporting role in this context, offering a potential foundation for inclusive engagement, cross-sectoral collaboration, and transparent data access. Their integration into EBOCC would help accelerate progress while providing continuity with existing efforts already aligned with policy and user needs. To realise this potential, key next steps include establishing governance structures for the stakeholder network, clarifying dashboard maintenance responsibilities, ensuring interoperability with EU-level data platforms, and defining procedures for onboarding new members and updating the network map.

We also encourage other networks to apply this open, reusable dashboard framework to support broader, more inclusive stakeholder engagement across sectors, regions, and disciplines – an essential step toward more effective biodiversity monitoring in an evolving policy and ecological landscape.

Supporting information

S1 File. Full list of questions from the registration form.

(JSON)

pone.0329390.s001.json (5.3KB, json)
S2 File. Examples of data cleansing measures for the input “Indicate your position in the biodiversity data flow”.

(DOCX)

pone.0329390.s002.docx (5.2KB, docx)
S3 File. SQL Query to group the members according to their institution.

The SQL query aggregates detailed information about the institutions, including their country, events attended, occupational sector, projects, realms, scopes, directives, EU regions, data-sharing interactions, and geographic coordinates.

(SQL)

pone.0329390.s003.sql (895B, sql)
S4 File. API endpoints.

(DOCX)

pone.0329390.s004.docx (14.3KB, docx)
S5 File. JSON response of ID 1 as name-value pair.

(JS)

S6 File. JavaScript options for the network graph.

(JS)

S7 File. Technical specifications and licence.

(DOCX)

pone.0329390.s007.docx (12.3KB, docx)
S1 Fig. Cumulative number of new network registrations over the course of the EuropaBON project.

(TIF)

pone.0329390.s008.tif (230KB, tif)
S2 Fig. Distribution of data providers, -users, and organisations that are both, data providers and users, visualised across different occupational sectors.

Citizen scientists are excluded from this figure due to the small number of stakeholders that belong to this occupational category. Stakeholders that could not be categorised into either of these groups were classified as “other” and are also excluded from this figure.

(TIF)

pone.0329390.s009.tif (166KB, tif)
S3 Fig. Marginal effects of the negative binomial model for degree centrality and number of activities.

Marginal effects and corresponding 95% confidence intervals calculated for explanatory variables grouped into categories (i.e., position in the data flow, occupational sector, geographical region, realm, and EU directives). Dependent variables are stakeholder connectedness (degree centrality) and participation in EuropaBON stakeholder events (number of activities). Filled- and open circles indicate significant (p-value 0.05) and non-significant effects on degree centrality and number of activities that stakeholders participated in. Filled red circles indicate reference levels.

(TIF)

pone.0329390.s010.tif (904.4KB, tif)

Acknowledgments

We gratefully acknowledge the expertise and time of our IT colleagues at iDiv, especially Sebastian Eulau and Christopher Zimmermann, in setting up the IT infrastructure and the Docker environment. The authors would also like to thank Emily Wendt (iDiv, Germany) for her support on this project. The authors would like to express their gratitude to the German Centre for Integrative Biodiversity Research (iDiv) for hosting the project coordination.

Data Availability

The entire source code of the website is available in the EuropaBON GitHub repository (https://github.com/EuropaBON/stakeholder-dashboard), and an archived version of the code has been made publicly available on Zenodo (https://doi.org/10.5281/zenodo.10047342).

Funding Statement

This is a product of the EuropaBON project funded from the European Union’s Horizon 2020 research and innovation programme under grant agreement No 101003553. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.

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Decision Letter 0

Florian Borgwardt

22 Jan 2025

PONE-D-24-56281The EuropaBON Stakeholder Dashboard: A dynamic web application to map Europe's biodiversity communityPLOS ONE

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Reviewer #1: The manuscript "The EuropaBON Stakeholder Dashboard: A dynamic web application to map Europe's biodiversity community" provides excellent insight into the EuropaBON stakeholder community, which is essential for building a solid and comprehensive biodiversity monitoring network. The paper focusses on the analysis of stakeholder/member data (entered upon registration) and its visualisation through an interactive, and publicly accessible, online dashboard.

I believe this paper merits publication, but I feel it lacks specific details and clarity in writing when it comes to technical soundness and use of statistics.

One of the main questions pertains to the provenance of the data, which I consider essential for evaluating the representativeness of the results. This consists of two components:

* How have you collected information on the 'edges', i.e. which node contributes data to whom, and receives data from whom?

* How have you dealt with 'translating' information provided by individual members to institution/node level?

Also, please detail any actions you may have taken to assess the representativeness of this edges.

With regards to the statistical analysis, I am not familiar with the negative binomial model used, but -as detailed in the specific comments- miss a clear explanation of the methods and parameters used in this section.

Finally, I presume there’s more to learn from the available data using alternative / additional visualisations. It is no surprise that big (networked) organisations such as GBIF, data ‘requesters such as the EEA and EC and research infrastructures have a high level of centrality. Additionally for some of these nested/networked organisations both the overarching, as well as the regional node organisation feature among the nodes (e.g. OBIS - EurOBIS, [INSDC] - NCBI-Genbank / ENA). It is unclear how this is accounted for. Given the focus on biodiversity monitoring, I wonder if an analysis excluding/hiding those initiatives and having more focus on the institutes who perform actual ‘on the ground’ monitoring would provide additional insights into the European landscape. In it’s current form the visualisation for (1) occupational sectors and (2) realms have only limited information value, and (3) the geographic regions visualisation could possibly be improved by using the colour coding for variables other than geographic region (which is evident from the map).

Specific comments

* The main objectives include identifying skill gaps. I am unsure how this is covered by the data and analysis provided.

* You mention in the introduction "web application that allows users to monitor network changes and activity levels in real time". I would appreciate if you could comment on how realistic this proved to be, what changes are to be expected and which ones would be much harder to pick up (given that I presume users don't update their profile very frequently).

* "Network members provided information essential to this analysis during the network registration process (https://europabon.org/members/register/index)." Note that the full set of questions the user is presented with are only shown upon actual registration, in the interest of this paper it would be useful to include/discuss these in more detail and have the full list included in the supplementary material.

* The phrase "while filtering for verified users with non-empty data provider or data user fields" is unclear. Please elaborate.

* On the nodes API, the sentence "To establish edges, each value in the data user and data provider columns is iterated through, creating connections (from, to) via the nodes' IDs in the edges object." is not entirely clear. Please clarify.

* S3 Figure: this figure seems rather unnecessary.

* "Individual members' information is not disclosed in the dashboard and we grouped stakeholders by their affiliation (i.e., several individual members can belong to the same organisation and thus display as one and the same node)." Please specify how this was done, was this a simple 'distinct' operation?

* The section "Statistical analysis of network data" is very hard to read, also several components of the model lack explicit explanation in the text.

* "and OECD country outside within Europe" - Please check, probably this should be either read "outside" or "within"?

* Table 1 - see earlier comment on nested/distributed organisations

Reviewer #2: General Comments

This paper describes a network analysis identifying key EuropaBON stakeholders, their relationships, and participation patterns, and an associated interactive website that displays the data. The analysis is well executed and I have no suggested changes to that aspect. The website and analysis provide an effective model for other such networks to analyze and display participation patterns (even the larger GEO BON). Importantly, the authors provide full access to the code to reproduce the website and analysis, greatly facilitating such adoption. My general criticism is that the Introduction and Discussion lack detail, including discussion of previous research, and analysis of other similar efforts to characterize conservation networks. That would allow the reader to appreciate how this analysis adds to our current understanding of the functioning of these networks. The Introduction is particularly sparse and contains some vague language about “data” and “communities”, perhaps under the assumption that the reader is already familiar with what types of data are collected in BONs and what types of players are involved. I recommend adding detail throughout, with an eye towards making the story clear to readers with no familiarity with the concept. The Introduction should ideally be expanded into at least 4 paragraphs. Currently, it is lacking in citations and critical background information. The reader must wait until the Results and Discussion to understand why this dashboard is really important and needed. The central paragraphs should provide examples of why it would be useful to visualize this information and why this is currently an unmet need. The Discussion should better highlight how learning about a network can improve it, and how subsequent improvements in the network translate to real conservation outcomes. I provide some suggestions to help assuage these concerns in the Detailed Comments below. Once these are addressed, I feel this paper will make a nice contribution.

Detailed Comments

ABSTRACT

The Abstract is good, but the description of what the dashboard actually displays is vague. Please add a few details in the final 6 sentences of the Abstract that give the reader some idea of specifically what types of data and information are displayed by the dashboard and how it might be used.

INTRODUCTION

1st paragraph, last sentence: “...accessibility of biodiversity data…”: What types of biodiversity data? Please give an example or two.

2nd paragraph, 1st sentence: “...biodiversity communities…”: What is meant by this? Please be more specific.

2nd par, 3rd sentence: “the impact of key contributors”: Again, I find this language to be a bit vague. What kinds of impacts are we talking about? Is this a matter of the amount of data that each country is contributing data to the BON? Please try to be more specific.

2nd paragraph of Introduction: This paragraph (ideally expanded to 2 or 3 paragraphs) should be where most of the background information is provided to the reader. However, it currently has no citations and is generally light on background information. Please expand this to provide the reader adequate background information so that they can fully understand the value of your dashboard contribution.

3rd paragraph of Introduction: “It offers high-level information in one view that can be used to identify occupational sectors, realms, or geographic regions with the most connections and pinpoint the central actors within the network.”:

You haven’t fully established why it is important to visualize the activities of the central actors, nor have you introduced why “occupational sectors” matter

Define what a “realm” is (e.g., how does it differ from a “sector”?).

“The main objective of this study was to 1) map the EuropaBON stakeholder network across sectors, realms and EU regions, identify 2) skills gaps, thematic-, and geographic gaps, 3) data providers and users 4) and key stakeholders, and 5) provide this as a fully responsive, interactive web application that allows users to monitor network changes and activity levels in real time.”: There are logical problems with the flow of language in the above list of objectives including duplication and incorrect placement of verbs relative to list numbers. Rephrase to flow better, perhaps something like: “The main objectives of this study were to map the EuropaBON stakeholder network across sectors, realms and regions, and to identify gaps in skills, thematic program areas, and geography. Our aim was to create a fully responsive, interactive web application that allows users to monitor network changes and activity levels in real time.”

METHODS

Paragraph 1: The number of register EuropaBON members etc. might fit better in the Introduction as background information.

Is “13.09.2024” a correct date format for this journal?

Paragraph 2: “Network members provided information essential to this analysis…” What kinds of information and in what form?

Paragraph 3: “...through right joins in the database, combining information based on common identifiers…” This is unclear and perhaps provides too much detail without actually informing the reader of the end result. The same applies to this “...user details, event statistics, and ISO region information…”. It seems vague, limiting reproducibility, while at the same time providing little insight as to what actually was performed for a general reader. Also, spell out ISO.

“The API has four endpoints:”: Briefly explain here what an API endpoint is and what it does. Without that, the list of API endpoints is less meaningful. The links go to plain text pages which are backend data files that power the dashboard. But without a brief introduction to API endpoints, the reader is left confused about what the function of the links is.

Bullet point 2: “storing them as nodes in JSON format”: Please explain a little what it means to be a node in JSON format. What do they mean in the context of the end user experience?

“Centrality” section: Perhaps add a little about what Centrality would mean in terms of EuropaBON members. The examples you provide about citations and page rank are illustrative but a more concrete example would be nice of what a highly central BON member would be like.

End of Page 7, beginning of page 8: Here is the first time you provide the subcategories in each category such as sector, realm, etc. These should be provided earlier so that it is clear what a realm, etc. is early on.

Beginning of page 8: “...several individual members can belong to the same organisation and thus display as one and the same node…”: I think this information should be made clear earlier on. Until now, it was not clear to me that nodes were organizations and that data from individual members in member portal were being aggregated to inform node characteristics.

Fig. 2 caption: All of these metrics are interesting sounding, but I can’t help but wonder what they will be used for and by who. The background and information regarding utility that is needed to make learning about these metrics interesting should be included in the expanded Introduction.

Page 9, penultimate paragraph of Methods: “...the number of EU directives associated with the stakeholder’s activities…”: I could be wrong, but wouldn’t the number of directives associated with the stakeholder’s activities be (to some extent) caused by the number of activities (the dependent variable) and not vice versa? I recommend carefully considering this possibility.

Table 1: This table would be improved by explaining what centrality means and giving some indication of the range of values expected for this measure (e.g., it is impossible to know if the numbers displayed are high or low, relatively speaking).

RESULTS

Second paragraph of Results: “...are clearly underrepresented in the network, with only 8% (n=44) of all stakeholders…”: This isn’t a supported statement without providing information about what % would be expected if they were proportionally represented. Please either provide this information or else revise the claim.

‘EuropaBON’s stakeholders’ section: “...research infrastructures, -networks, or -projects…”: The hyphens in this sentence are confusing. I suggest spelling out “...research infrastructures, research networks, or research projects…” if that is the intended meaning.

Fig. 4 caption: Please state what the colours represent.

“Factors driving stakeholder…” section, first paragraph: You already state that you used negative binomial models in your Methods, so this is duplication. I would include this information only in the Methods. Much of this paragraph is duplicate information that already occurs (and belongs in) the Methods.

“Factors driving stakeholder…” section, second paragraph: “...these groups had on average by 2.4 and 1.3 more connections…”: I appreciate that you provide effect sizes here. Can you confirm that this means 2.4 and 1.3 more connections on average? Or is it 2.4 and 1.3 times more? Also, more than what, the average? The intercept group?

DISCUSSION

First paragraph: The sentence beginning “Our analysis…” is rather long and would benefit from editing to be more concise or by splitting it into two sentences.

Second paragraph: Can you better explain what the EBOCC is and what it would look like for it to focus on this network?

Third paragraph: You set forth some measures to increase representation, which are good. But how would those translate into better outcomes? That piece is still lacking. Can you spell out why being well connected and inclusive matters?

Fourth paragraph: This paragraph starts out talking about realms, but finishes with a seemingly new topic (a list of key actors). Can you tie these together and provide a concluding sentence to this paragraph?

In general, there is a lack of cited literature in this Discussion and a corresponding lack of connection to previous research and scholarly discussion about conservation networks and planning.

Last paragraph: You rightly point out that other similar collaborative efforts (including GEO BON) would benefit from a similar framework and analysis. I think you could brag a little here about how your solution provides a robust model (and even a complete code) to facilitate such widespread adoption. Well done.

REFERENCES

Again, I think the Introduction and Discussion could use more discussion of previous research and analysis of such conservation networks. That would allow the reader to appreciate how your analysis adds to our current understanding of these networks and how they operate.

Reviewer #3: Dear authors, dear editor,

The manuscript “The EuropaBON Stakeholder Dashboard: A dynamic web application to map Europe's biodiversity community” presents an innovative tool for mapping and analysing biodiversity stakeholder networks in Europe. By identifying key actors, highlighting data gaps, and enabling real-time updates, the dashboard contributes to advancing biodiversity monitoring and stakeholder engagement. While the manuscript aligns well with PLOS ONE's scope, it is not a traditional research article and deviates from the journal's preferred structure. Additionally, the language may be overly technical for a general audience. Although the contribution is valuable, it lacks full originality due to the existence of similar tools in other domains (e.g., biodiversity and environmental networks).

The manuscript contributes to biodiversity monitoring and stakeholder engagement.

The interactive dashboard and open-access code enhance transparency and usability, but the overall work and presentation lacks balance in terms of representation and clarity on how to overcome these issues, e.g. targeted outreach strategies to address geographic or realm underrepresentation. An outlook on the further maintenance is also missing (“at least five years after the project’s life time is a bit vague)

General comments:

A key concern is the lack of clarity regarding how stakeholders became members of the network. Did the authors actively approach key biodiversity actors, or was recruitment primarily passive (e.g., through social media outreach)? The absence of notable stakeholders, such as certain organisations in Switzerland or prominent institutions like the Natural History Museum in London, raises questions about the representativeness of the database. Additionally, incomplete entries (e.g., NHM Vienna) further suggest a lack of systematic inclusion.

Similar concerns arise regarding the measurement of activity levels. How were stakeholders invited to participate in events, and how did the authors account for potential barriers, such as funding constraints or scheduling conflicts? A lack of participation in specific EuropaBON events does not necessarily indicate lower overall engagement in biodiversity-related activities (only because one specific date would not suit them, does not make them less active in the field…). Additionally, the visual use of red to indicate participation below a threshold (e.g., fewer than 8 events) could be misleading, as red is often associated with negative connotations like "alarm" or "failure."

Another major concerns is how the member data are updated; from experience it would need regular reminders to ask members to update their data (including someone sending these reminders and chasing these data); generally I think the requested data do not change too often (except maybe projects organisations are involved in) and they are updated maybe only once a year (maximum), so that it is not really relevant to have this real time component; that of course takes a lot of time when using and filtering the dashboard.

Some of the terminology is not consistent. In the introduction authors talk about “the system”, “the network” and it is not clear what is meant and when it relates to the stakeholder network and/or the biodiversity observation system. This should be checked throughout the manuscript.

Line 64 says “in developing a EuropaBON”: here is a mixture between the European BON (the regional BON of GEO) and EuropaBON (the project); if the same name is used for both, then this should be clarified somewhere; the entire sentence does not make too much sense and needs to be rephrased. What is the “collaboratively designed system”?

In line 60 it is stated that network members were involved in developing the new European biodiversity monitoring system: if this is already in place, then this would need a clear reference! See also 169 onwards.

Methods:

Including a table summarising the information queried during registration would significantly enhance clarity. Additionally, a brief overview of the database structure, including key tables and their relationships, would help readers better understand how data were organized and processed. For instance, the statement “we retrieved data from multiple tables (users, profile, events, country) through right joins in the database, combining information based on common identifiers” is overly technical and could confuse non-specialist readers. Simplifying or illustrating this process would improve accessibility.

The API is described in detail (at least endpoint 2), which might be too specific for the reader and the journal after all. I think the description of the API is not really relevant for the paper and could be moved to the supplementary material. “nodes” and “edges” should be explained to the non-technical reader and the paragraph should be checked for readability and understandability.

For people not familiar with network analysis the term “centrality” and “page rank” need to be introduced before discussing them.

Regarding the position in the dataflow it would be helpful if the data flow could be depicted in a figure.

Regarding the functionality of the dashboard it would be cool if one could search for an organisation in the last table, then click on it and see it in the first map; in that map it would be nice to be able to click on the connections as well and get an information where it links to (this is especially useful if you are zoomed in). Also the number of connections of an organisation could be shown in the mouse-over box.

Results:

Some of the results are clearly connected to the question above how people were asked to join; the underrepresentation of certain realms could be a result of not having actively asked freshwater or marine people. In that aspect, only recording “cross-realm” (without knowing which realms are crossed) also biases the evaluation.

The headline “Factors driving stakeholder centrality and activity” does not correspond with what is really in this paragraph and I would recommend to rename this using a more common word than “centrality”.

Discussion:

The discussion would benefit from a more critical analysis and a broader integration of references beyond EuropaBON-related publications. For example, statements such as “the network would greatly benefit from enhanced interaction with the freshwater and marine communities to exchange on many points of common interest” are vague and lack concrete suggestions for achieving these goals. Similarly, while the importance of ensuring the network's longevity is emphasised, the manuscript does not provide specific strategies or mechanisms for sustaining the network beyond the project’s timeline.

All of my above-mentioned concerns need to be thoroughly addressed in the discussion including recruitment, activity level, maintenance etc.

Additionally, a short discussion on “Stakeholders acting as both data provider and data user, as well as those solely acting as data provider, had significantly more connections compared to those solely acting as data users.“ would be nice as I think this is a valuable result. Also should it be discussed why it is not surprising that GBIF has the most connections.

Further, the authors could strengthen the case for originality by explicitly comparing their tool with existing platforms.

Language wise the paper should be reviewed by a native speaker. Also the use of tenses needs to be re-checked (mixture of past and present tense in the methods for example)

In terms of used citations I would appreciate to have more balanced amount of non EuropaBON references.

Specific comments:

Line 29: rephrase as “one of the most comprehensive networks of biodiversity stakeholders to date was recently developed…”

47: add that there is also a separation in terms of the different realms/biomes

63: the EBV will not be monitored by the system but rather by the stakeholders… maybe “within the system”

64: “in developing a EuropaBON”: here is a mixture between the European BON (the regional BON) and EuropaBON (the project); if the same name is used for both, then this should be clarified somewhere

68-73: these are results and should be skipped here

69: what is meant by “displays of Europe's biodiversity community”?

73 onwards: rethink the punctuation and rephrase as “The main objectives of this study were 1) to map the EuropaBON stakeholder network across sectors, realms and EU regions, 2) to identify skills gaps, thematic and geographic gaps, 3) to identify data providers and users, 4) key stakeholders, as well as 5) to provide this as a fully responsive, interactive web application that allows users to monitor network changes and activity levels in real time.” Or something along these lines

88: add examples which information was queried

93: what are verified users?

95: skip “server’s”

97: I would think the API is not part of the input data and should have a sub-heading on its own

101: which table?

148: please make clear if the web application is the base for the dashboard or if the web application IS the dashboard

154: say that MariaDB actually is a database

157: add “(Germany)” next to iDiv

168: harmonise the use of capital letters for northern, western etc. (it is used with capital letters later on, eg line 198); the hyphen after northern-, western-, eastern- needs to be skipped

186: what does this mean “it can often be modelled”?

193: harmonise “PageRnk” vs “page rank”

198 and everywhere else: harmonise the use of a/no comma after “i.e.” and after “e.g.”

200: harmonise the use of capital letters for the organisations as well throughout the manuscript

202: EU Directives: where does this information come from?

Table 1: spell out BOLD as well; isn’t it “BOLDSYSTEMS” now?

222: remove the space after the “/” and harmonise this throughout

224: skip “currently located in this region”

225: remove the hyphen

236: remove the hyphens

249: remove the hyphen

Figure 4: explain the colours

257: could you give an example for the overdipersion?

259: skip “respectively“

258-261: this is methods and should be moved there

271: rethink the use of “better” rather than “more” as better implies that the quality is higher while it is only the count of connections!

299: to which other networks did you compare this? This should be added.

312: add a second intergovernmental organisation; GBIF to…

314: remove the hyphen

320: remove the hyphen

322: I suppose it should be JRC (Joint Research Centre)

334 onwards: please rephrase this sentence; there are five (!) “and” in there…

338: add ither initiatives that could be relevant

340: replace “these initiatives“ by “this initiative”

344: “synergies” instead of “synergy”

345: I do not understand “recruit non-members” as they will be members as soon as they are recruited, no?

346: consider using an alternative term to “networks” here as generally “network” is mostly used as EuropaBON network in this manuscript (as at the end of this sentence)

**********

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Reviewer #1: Yes: Aaike De Wever

Reviewer #2: Yes: Michael C. Allen

Reviewer #3: No

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PLoS One. 2025 Aug 13;20(8):e0329390. doi: 10.1371/journal.pone.0329390.r002

Author response to Decision Letter 1


31 Mar 2025

1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at

https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and https://journals.plos.org/plosone/s/file?id=ba62/PLOSOne_formatting_sample_title_authors_affiliations.pdf

RESPONSE: We have kept to the requirements for the file naming.

2. In your Methods section, please include additional information about your dataset and ensure that you have included a statement specifying whether the collection and analysis method complied with the terms and conditions for the source of the data.

RESPONSE: We have added a statement in our Methods section: This study was conducted in accordance with the EuropaBON Data Privacy and Use Policy, available from the EuropaBON website, which outlines the terms and conditions governing the collection, access, and use of stakeholder data.

3. Thank you for stating the following financial disclosure:

“This is a product of the EuropaBON project funded from the European Union’s Horizon 2020 research and innovation programme under grant agreement No 101003553.”

Please state what role the funders took in the study. If the funders had no role, please state: "The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript."

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RESPONSE: We have added the information to the role of the funders in the updated cover letter.

All responses regarding the reviewer comments can be found in the uploaded file "Response to Reviewers.docx"

Attachment

Submitted filename: Response to Reviewers.docx

pone.0329390.s012.docx (41.1KB, docx)

Decision Letter 1

Florian Borgwardt

23 May 2025

PONE-D-24-56281R1The EuropaBON Stakeholder Dashboard: A dynamic web application to map Europe's biodiversity communityPLOS ONE

Dear Dr. Langer,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process.

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We look forward to receiving your revised manuscript.

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Florian Borgwardt

Academic Editor

PLOS ONE

Journal Requirements:

Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice.

Additional Editor Comments :

Dear authors,

thanks for your revision on the manuscript. I received the feedback from the reviewers and reviewer 3 provides clear guidance how the manuscript should improved. Please consider these comments to streamline your manuscript.

Kindest Regards

Florian Borgwardt

[Note: HTML markup is below. Please do not edit.]

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation.

Reviewer #1: All comments have been addressed

Reviewer #3: (No Response)

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2. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Yes

Reviewer #3: Yes

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3. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: Yes

Reviewer #3: Yes

**********

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Reviewer #1: Yes

Reviewer #3: Yes

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Reviewer #3: Yes

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6. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: Following the corrections after the first review round, the manuscript “The EuropaBON Stakeholder Dashboard: A dynamic web application to map Europe's biodiversity community” has now greatly improved. The comments were appropriately dealt with, considering the limitations with regard to further development of the online tool. Nevertheless hope I hope that earlier comments pertaining to the functionality, usefulness and up-to-dateness can be tackled during follow-up initiatives of EuropaBON.

Reviewer #3: Thanks to the authors for revising the manuscript and integrating most of my previous comments.

Still, I do have some concerns regarding the publication of the paper.

A lot of time and effort was invested in building up the dashboard and in writing this manuscript. But the sustainability of the dashboard is still very vague and needs to be improved.

As I read it now, the dashboard should be further used for the EBOCC. The paragraph on EBOCC introduces a potentially important initiative but remains vague. It is unclear whether EBOCC is a formal commitment or a proposal under review, and how it relates to the future of the EuropaBON dashboard and stakeholder database. If the intention is to transfer or integrate these components into EBOCC, this should be stated more clearly. Otherwise, the long-term sustainability and purpose of the dashboard remain uncertain.

Also, the manuscript could benefit from explicitly stating whether the EuropaBON stakeholder network is still open to new members and how interested individuals or institutions can join. Since the dashboard is promoted as a real-time tool, clarity on ongoing recruitment and integration of new members is essential for demonstrating its long-term relevance and inclusivity.

The claim that the dashboard is reusable and could be adopted by other networks is valuable but currently vague. The manuscript should specify which components are reusable (e.g., code, database structure, API), what skills are required to adapt them, and whether any documentation or support is available. If establishing “connections with our network” refers to API-level interoperability or shared infrastructure, this should be explicitly described.

In terms language and length, I think some sentences are too lengthy and written too detailed (I even suggested some removements). The methods chapter is far too long. This is a scientific article and not a how-to-manual on building up an API or dashboard. The API endpoints and technical architecture are overly technical for a general audience. SQL queries, API responses, name-value pairs or examples for the attributes can be skipped or moved to Supplementary Material. Some information is just not relevant (“It was developed by the original…”) and should be skipped.

The discussion is still very superficial in terms of on practical implications. It still touches too lightly on critical points like dashboard maintenance, integration with other networks, and tangible next steps (see all my entry points). It repeats results at times (e.g., GBIF's centrality) instead of building on them and the tone is largely promotional.

For better readability, the discussion should be dived into subchapters, e.g.

• Inclusiveness and representation in the Network

• Role of key institutions and central actors

• Implications for biodiversity monitoring and policy

• Opportunities and limitations of the dashboard

• Future directions and recommendations

Still some tense issues are remaining, mixing up use of different tenses in the introduction an methods (e.g. “EuropaBON advances this work by offering a dynamic, continuously updated real-time tool for exploring network structure and engagement, drawing on the FAIR principles” should be in past tense as the project is over.). Also the use of capital letters for attributes or also for the directives needs to be harmonized.

Specific comments

Introduction

2nd paragraph: “… promotes the use of Essential Biodiversity Variables (EBVs)…”: explain what the EBVs can be used for (still not clear to everyone…)

“… have been involved in every step of the development of the new European biodiversity monitoring system…”: this still sounds like the system is already in place; maybe start with explaining what and how far it is (“Although not yet implemented…”) and then add the info how EuropaBON members where involved; please also add the general aim of the new system.

“their participation in project activities”: please change to “EuropaBON project activities”

“Northern Europe, Western Europe, Eastern Europe, Southern Europe, and non-European regions”: this reads a bit weird as there is no Central Europe, but I guess I should have commented on this earlier…

Methods

Input data, 1st paragraph: the very first sentence about the data cleaning is rather lengthy and also the example of only one input field is confusing; you could simply state something like “To ensure consistent institutional representation on the dashboard, we grouped individual member entries by their affiliated institution. When multiple members from the same institution provided different roles in the data flow (e.g., one as a data user, another as a provider), we combined these responses to classify the institution accordingly (e.g., as both user and provider). …” or something along these lines

Data Processing: Network graph:

“Each node is assigned an ID and corresponding attributes (e.g. “id”: “1”, 'label': “German Center for Integrative Biodiversity Research (iDiv)”, "scope": "Global", "group": "datauser", etc.).”: I would skip the example and just list the attributes; please check the use of different types of inverted commas as well as the capital letters in the attributes (see also Terrestrial, Freshwater below).

“The centrality values for each individual node are calculated after the creation of the API and are therefore not included in the endpoint. The appendix S5 file shows an example of the attributes for ID 1.” Skip the first part and move the reference to S5 above to the ID section.

Start a new paragraph at “The API endpoint also contains information about the connections (edges) between the individual nodes.” The sentence is hard to read, maybe rephrase as “This API endpoint also contains information about the connections between the individual nodes, represented by the edges in the network graph.”

Node properties, Centrality, 2nd paragraph: skip the sentence “It can therefore be said that a highly…”

Statistical model of network data: the first sentence says something about the aim of the section (i.e. the analyses); but the aim of the section is to explain the methods! Please skip or change.

“To identify the most suitable approach, we evaluated multiple statistical models …” skip that sentence.

“including non-OECD country outside of Europe, or OECD country within Europe”: I am not clear why this OECD/non-OECD approach was chosen; this should be explained, e.g. “We distinguished between OECD and non-OECD countries outside Europe to account for potential differences in institutional capacity and access to biodiversity infrastructure, which may affect participation and connectedness within the network.”

“The number of EU directives was included as a proxy for the regulatory…”: please indicate the exact purpose of why and how this question was included in the registration process (“Which EU Directives are relevant for your work?”) otherwise this sentence here is a bit unclear as the Directives are not related to the institutions.

Results, EuropaBON’s network, 2nd paragraph: skip “(in order of descending abundance)”.

The sentence “The low number of citizen scientists may…” is confusing, redundant, and speculative and should be changed; suggestion: “Only seven members identified their primary affiliation as citizen science. However, it is possible that more individuals involved in citizen science chose to register under another institutional category, such as academia or NGOs.”

Skip the end of the sentence “suggesting that the region is underrepresented relative to its political and geographic footprint in Europe.”

EuropaBON’s stakeholders, 1st paragraph: add “highest centrality” and “highest page rank”

Figure 3 caption: skip “The visualisation was generated with Cytoscape v3.10.2 [30] using the Compound Spring Embedder (CoSE) layout algorithm [31].” This is Methods.

Figure 4 caption: skip “We selected the "viridis" color scheme…” as this is not relevant. Keep the last sentence though.

Factors influencing stakeholder impact and engagement: change the chapter title to “Stakeholder impact and engagement”

1st paragraph: skip the last sentence “We begin by….”; this is needless.

Discussion

Please see all my comments above.

2nd paragraph: The sentence “Institutes classified as "cross-realm" - those involved in more than one realm - make up the majority of network nodes. This is primarily because, during data processing, information from individual members affiliated with the same institution was consolidated. When members listed different realms for the same institution, these were grouped under the "cross-realm" category. Of course, it is also possible that many institutions today genuinely operate across multiple realms, reflecting the increasingly interdisciplinary nature of research and practice [32].” is confusing and could be improved, e.g. through “The large proportion of ‘cross-realm’ institutions results in part from data processing: when different members of the same institution indicated different realms, their entries were consolidated. However, this may also reflect a genuine trend toward interdisciplinarity, as many institutions increasingly engage across multiple ecosystem types [32].”

**********

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Reviewer #1: Yes: Aaike De Wever

Reviewer #3: No

**********

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PLoS One. 2025 Aug 13;20(8):e0329390. doi: 10.1371/journal.pone.0329390.r004

Author response to Decision Letter 2


7 Jul 2025

We have revised the manuscript again and addressed all points raised by reviewer 3. Furthermore, we have checked the reference list again for correctness, as requested by the journal.

Attachment

Submitted filename: Response_to_Reviewers_auresp_2.docx

pone.0329390.s013.docx (13.9KB, docx)

Decision Letter 2

Florian Borgwardt

16 Jul 2025

The EuropaBON Stakeholder Dashboard: A dynamic web application to map Europe's biodiversity community

PONE-D-24-56281R2

Dear Dr. Langer,

We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements.

Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication.

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Kind regards,

Florian Borgwardt

Academic Editor

PLOS ONE

Additional Editor Comments (optional):

Thanks for your the revisions. I see all comments from the reviewers addressed.

Reviewers' comments:

Acceptance letter

Florian Borgwardt

PONE-D-24-56281R2

PLOS ONE

Dear Dr. Langer,

I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now being handed over to our production team.

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Associated Data

    This section collects any data citations, data availability statements, or supplementary materials included in this article.

    Supplementary Materials

    S1 File. Full list of questions from the registration form.

    (JSON)

    pone.0329390.s001.json (5.3KB, json)
    S2 File. Examples of data cleansing measures for the input “Indicate your position in the biodiversity data flow”.

    (DOCX)

    pone.0329390.s002.docx (5.2KB, docx)
    S3 File. SQL Query to group the members according to their institution.

    The SQL query aggregates detailed information about the institutions, including their country, events attended, occupational sector, projects, realms, scopes, directives, EU regions, data-sharing interactions, and geographic coordinates.

    (SQL)

    pone.0329390.s003.sql (895B, sql)
    S4 File. API endpoints.

    (DOCX)

    pone.0329390.s004.docx (14.3KB, docx)
    S5 File. JSON response of ID 1 as name-value pair.

    (JS)

    S6 File. JavaScript options for the network graph.

    (JS)

    S7 File. Technical specifications and licence.

    (DOCX)

    pone.0329390.s007.docx (12.3KB, docx)
    S1 Fig. Cumulative number of new network registrations over the course of the EuropaBON project.

    (TIF)

    pone.0329390.s008.tif (230KB, tif)
    S2 Fig. Distribution of data providers, -users, and organisations that are both, data providers and users, visualised across different occupational sectors.

    Citizen scientists are excluded from this figure due to the small number of stakeholders that belong to this occupational category. Stakeholders that could not be categorised into either of these groups were classified as “other” and are also excluded from this figure.

    (TIF)

    pone.0329390.s009.tif (166KB, tif)
    S3 Fig. Marginal effects of the negative binomial model for degree centrality and number of activities.

    Marginal effects and corresponding 95% confidence intervals calculated for explanatory variables grouped into categories (i.e., position in the data flow, occupational sector, geographical region, realm, and EU directives). Dependent variables are stakeholder connectedness (degree centrality) and participation in EuropaBON stakeholder events (number of activities). Filled- and open circles indicate significant (p-value 0.05) and non-significant effects on degree centrality and number of activities that stakeholders participated in. Filled red circles indicate reference levels.

    (TIF)

    pone.0329390.s010.tif (904.4KB, tif)
    Attachment

    Submitted filename: Response to Reviewers.docx

    pone.0329390.s012.docx (41.1KB, docx)
    Attachment

    Submitted filename: Response_to_Reviewers_auresp_2.docx

    pone.0329390.s013.docx (13.9KB, docx)

    Data Availability Statement

    The entire source code of the website is available in the EuropaBON GitHub repository (https://github.com/EuropaBON/stakeholder-dashboard), and an archived version of the code has been made publicly available on Zenodo (https://doi.org/10.5281/zenodo.10047342).


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