Abstract
Menkes disease and occipital horn syndrome (OHS) are allelic, X-linked recessive copper-deficiency disorders resulting from mutations in ATP7A, or MNK. Classic Menkes disease has a severe phenotype, with death in early childhood, whereas OHS has a milder phenotype, with, mainly, connective-tissue abnormalities. Data suggest that steady-state localization of ATP7A to the trans-Golgi network (TGN) is necessary for proper activity of lysyl oxidase, which is the predominant cuproenzyme whose activity is deficient in OHS and which is essential for maintenance of connective-tissue integrity. Recently, it was reported that ATP7A-transcript levels as low as 2%–5% of normal are sufficient to result in the milder phenotype, OHS, rather than the phenotype of Menkes disease. In contrast to previously reported cases of OHS, we describe a case of OHS in which, because of a frameshift mutation, no normal ATP7A is produced. Although abundant levels of mutant transcript are present, there are substantially reduced levels of the truncated protein, which lacks the key dileucine motif L1487L1488. It has been demonstrated that the dileucine motif L1487L1488 functions as an endocytic signal for ATP7A cycling between the TGN and the plasma membrane. The present report is the first to describe an ATP7A truncation that results in OHS rather than in Menkes disease. The data from the present report support the concepts that (1) OHS results from lower levels of functional ATP7A and (2) ATP7A does not require the dileucine motif to function in copper efflux.
Menkes disease (MIM 309400) and occipital horn syndrome (OHS [MIM 304150]) are allelic, X-linked recessive copper-deficiency disorders (Levinson et al. 1993; Das et al. 1995) resulting from mutations in ATP7A, or MNK (GenBank accession number NM_000052) (Chelly et al. 1993; Mercer et al. 1993; Vulpe et al. 1993). ATP7A contains 23 exons that span a genomic region of ∼140 kb (Dierick et al. 1995; Tümer et al. 1995) and has a predominant transcription product of ∼8.5 kb (Chelly et al. 1993; Mercer et al. 1993; Vulpe et al. 1993). ATP7A is ∼170 kD in size and is a member of the P-type–ATPase family (Chelly et al. 1993; Mercer et al. 1993; Vulpe et al. 1993). P-type ATPases transport cations across cellular membranes by using energy generated by ATP hydrolysis (Pedersen et al. 1987). ATP7A functions (a) to transport copper from the gastrointestinal tract into the bloodstream, (b) to efflux excess copper from the cell, and (c) for intracellular delivery, within the secretory pathway, of copper to cuproenzymes (for reviews, see Kaler 1998; Camakaris et al. 1999; Harris 2000). At basal intracellular copper levels, the steady-state localization of ATP7A is to the trans-Golgi Network (TGN) (Petris et al. 1996; Yamaguchi et al. 1996; Dierick et al. 1997). However, in an environment with excess copper, ATP7A is transported, via secretory vesicles, to the plasma membrane, where it functions to efflux copper from the cell (Petris et al. 1996, 1999; La Fontaine et al. 1998). In response to intracellular copper levels, it is believed that ATP7A cycles between the TGN and the plasma membrane. The dileucine motif L1487L1488 functions as an endocytic signal for ATP7A cycling (Petris et al. 1998, 1999; Francis et al. 1999) and is necessary for internalization of the protein from the plasma membrane (Francis et al. 1999). However, data from Petris et al. (1998) suggest that the dileucine motif L1487L1488 is not necessary for ATP7A to function in copper efflux.
Classic Menkes disease is a rare multisystem disorder with a severe phenotype including neonatal neurological degeneration, hypopigmentation, skin and joint laxity, coarse and twisted hair (pili torti), hypothermia, seizures, failure to thrive, and death typically by the age of 3 years (Menkes et al. 1962). In patients with Menkes disease, abnormal, or nonfunctional, ATP7A results in decreased intestinal absorption of copper, which leads to decreased copper in the plasma, liver, and brain (for review, see Kaler 1998). The clinical phenotype of Menkes disease can be attributed to the reduced activity of several cuproenzymes, such as lysyl oxidase, tyrosinase, copper/zinc superoxide dismutase, dopamine β-hydroxylase, and cytochrome c oxidase (Menkes 1988). In addition, it has been demonstrated that there is an accumulation of copper in certain tissues and cell types, which indicates that ATP7A in these patients is not functioning properly to efflux copper from the cell (for review, see Kaler 1998). Thus, at the tissue level, Menkes disease can be considered a disorder of copper maldistribution.
OHS, formerly known as “X-linked cutis laxa” or “Ehlers-Danlos syndrome type 9,” has a phenotype milder than that of Menkes disease, mainly composed of connective-tissue manifestations, including skin laxity, hyperextensible joints, bladder diverticula, characteristic occipital exostoses, and, occasionally, mild neurological involvement (Lazoff et al. 1975; Byers et al. 1980; for review, see Tsukahara et al. 1994). Byers et al. (1980) demonstrated that patients with OHS have decreased activity of the cuproenzyme lysyl oxidase, which functions in the initiation of cross-linking of both collagen and elastin. It has been hypothesized that OHS results from the presence of low levels of functional ATP7A, unlike Menkes disease, in which no normal ATP7A activity exists (Das et al. 1995). This hypothesis has been supported by a recent study that demonstrates that ATP7A-transcript levels as low as 2%–5% of normal are sufficient to result in the milder phenotype, OHS, as opposed to Menkes disease (Møller et al. 2000). It has been postulated that lysyl oxidase is more sensitive than other cuproenzymes to copper deficiency, thus resulting in decreased lysyl oxidase activity in patients with OHS (Das et al. 1995; Levinson et al. 1996).
There are 35–40 known cases of OHS worldwide (Møller et al. 2000), but mutations in only 8 cases have been elucidated at the molecular level (table 1). In seven of these eight cases, the mutation leads to aberrant splicing of the ATP7A transcript (Kaler et al. 1994; Das et al. 1995; Ronce et al. 1997; Qi and Byers 1998; Møller et al. 2000; Gu et al. 2001). In four of the cases of OHS with a splice mutation, low levels of normal transcript have been detected (Levinson et al. 1993; Das et al. 1995; Møller et al. 2000; Gu et al. 2001). Missense mutations in two reported cases of OHS resulted in aberrant splicing of the transcript with an amino acid change in the normal transcript, which did not adversely affect the function of ATP7A (Kaler et al. 1994; Ronce et al. 1997). Qi and Byers (1998) did not detect normal ATP7A transcript by reverse-transcription PCR (RT-PCR) in a family with OHS with a splice mutation in intron 10. However, it is possible that the affected members of that family could produce a low level of normal ATP7A, similar to that produced in affected members of a family described by Møller et al. (2000). In addition, Levinson et al. (1996) described a patient with OHS who did not have a mutation in the coding region of ATP7A but, instead, had a 98-bp deletion in the regulatory region of ATP7A. Northern analysis indicated normal transcript levels; however, a chloramphenicol acetyltransferase (CAT) reporter assay suggested that the promoter deletion would result in decreased expression of ATP7A.
Table 1.
Mutationa | SpliceMutation? | SpliceSite | mRNA | Source(s) |
−403del98nt | No | … | Deletion in regulatory region, normal transcript level, reduced CAT activity | Levinson et al. (1996) |
IVS6+2del(taag) | Yes | Donor | Exon 6 skipped→frameshift→PTC, reduced normal transcript level | Møller et al. (2000), Gu et al. (2001) |
2055C→T | Yes | … | Exon 8 skipped→frameshift→PTC, exons 8–10 skipped, reduced transcript level with S637L | Ronce et al. (1997) |
IVS10+3a→t | Yes | Donor | Exon 10 skipped→in-frame deletion→deletion of transmembrane domains 3 and 4 in protein, abundant abnormal transcript level | Qi and Byers (1998) |
2642A→G | Yes | Donor | Exon 11 skipped→frameshift→PTC, exons 11 and 12 skipped→frame-shift→PTC, reduced transcript level with S833G | Kaler et al. (1994) |
IVS14−4a→g | Yes | Acceptor | Exon 15 skipped→in-frame deletion→deletion of transduction domain, abundant abnormal transcript level, reduced normal transcript level | Das et al. (1995) |
IVS17+5g→a | Yes | Donor | Exon 17 skipped→frameshift→PTC, reduced normal transcript level | Das et al. (1995), Levinson et al. (1993) |
4497–4499delG | No | … | Frameshift→PTC, abundant abnormal transcript level | Present study |
IVS = intervening sequence.
In the present report, we describe a frameshift mutation in a family with classic OHS. The mutation is novel—that is, it does not result in aberrant splicing of the transcript, as has been seen in seven of the eight previously reported mutations. In our case, no normal ATP7A mRNA is transcribed, owing to a frameshift mutation at codon 1451, which leads to premature truncation of the predicted protein. Because the protein was truncated prior to L14871488 in the carboxy terminus, it provides insight as to the importance, with respect to phenotype, of this signal.
The pedigree of this family with classic OHS reveals a pattern of affected individuals that is consistent with X-linked inheritance (fig. 1). The proband (III-2) sat without assistance at the age of 7 mo and was able to crawl at the age of 7.5 mo. On examination, he exhibited multiple bladder diverticula, renal calculus, vesicoureteral reflux, bilateral inguinal hernia repair, neurogenic bladder, genu valgum, and pectus excavatum; he also had mildly hyperelastic skin, especially over the abdomen, and required special education. He did not exhibit chronic diarrhea, orthostatic hypotension, or dysautonomic symptoms. A skeletal survey of this individual revealed bilateral occipital horns, mild lower-thoracic and lumbar platyspondyly, marked pectus excavatum, broad scapular necks, clavicular handlebar/hammer contour, humeral and femoral diaphyseal wavy contour, bulbous ulnar-coronoid and radial bowing of the forearms, rounded iliac-wing contour with broadening in the medial/lateral dimension, bilateral coxa valga, and minimal dextroconvex scoliosis from T4 to L4. At the age of 8 years, III-2's serum copper level was slightly low, at 60 μg/dl (normal range 70–150 μg/dl), as was the serum ceruloplasmin level, which was 18.9 mg/dl (normal range 20–42 mg/dl). At the age of 10 years 9 mo, he was given the Woodcock-Johnson Tests of Cognitive Ability, the Woodcock-Johnson Tests of Achievement, the Wechsler Individual Achievement Test, the Bender Gestalt Test, and the Human Figure Drawing Task. For the Wechsler Individual Achievement Test, he had scores that were age equivalent to 8 years 3 mo in basic reading, 8 years in math reasoning, and 8 years 6 mo in spelling. He had a standard score of 84 for the Woodcock-Johnson Tests of Cognitive Ability, which is in the low-average range. III-2's affected brother (III-3), maternal uncle (II-10), and cousin (II-5) were similarly affected but with slight variability in severity. The pattern of inheritance and the clinical findings were consistent with a diagnosis of OHS.
After obtaining informed consent, we collected skin biopsies and blood samples from III-2, III-3, III-2's unaffected brother (III-1), and their carrier mother (II-6), in accordance with the procedures of the institutional review boards of the University of Michigan Medical School. Fibroblast and Epstein-Barr virus–transformed lymphoblastoid cell lines were generated and cultured according to standard procedures.
To determine whether, in our case, the mutation involved a splice site, we performed RT-PCR. PCR products were generated using cDNA reverse transcribed from total RNA (SuperscriptII Reverse Transcriptase; GibcoBRL) and eight primer pairs that spanned the coding region of ATP7A. No novel aberrant splicing was detected by RT-PCR (not shown), suggesting that in both III-2 and III-3 the mutation was not due to a splice mutation.
To identify the mutation, we sequenced ATP7A at the genomic level. By use of the DNAeasy Tissue Kit (Qiagen), genomic DNA was isolated from lymphoblastoid cell lines from each family member studied and from an unrelated normal male control cell line. PCR products for each exon were generated from the genomic DNA of both III-2 and the control by intronic primer pairs for each of the 23 exons and the 98-bp triple repeat in the promoter region (table 2). PCR products were subcloned into TA-cloning vector pCR2.1 (Invitrogen) and were sequenced, by use of an ABI model 373XL automated sequencer, by the University of Michigan DNA Sequencing Core. II-6, III-1, III-2, and III-3 all had the 98-bp triple repeat in the promoter region, indicating that the mutation in this family was not similar to the OHS-promoter mutation described by Levinson et al. (1996). A frameshift mutation was identified in exon 23 of III-2 and, subsequently, in both III-3 and II-6. A single guanine nucleotide was deleted from a guanine triplet (fig. 2, black background) at nucleotides 4497–4499 of ATP7A, in III-2 and III-3 and in one allele of II-6; an unrelated normal control and III-1 and the other allele of II-6 all contained the guanine triplet at these nucleotide positions. Conceptual translation of III-2's ATP7A gene (fig. 2, mutant, gray background) shows a frameshift at codon 1451, resulting in a carboxy terminus with 13 novel amino acids before premature truncation of the protein. The truncated protein lacks the dileucine motif L1487L1488 (fig. 2, wt, underlined), which functions as an endocytic signal (Petris et al. 1998; Francis et al. 1999).
Table 2.
Primera(5′→3′) |
|||
Region/Exon | Forward | Reverse | Size(bp) |
Promoter | tcaatggagggaagaggat | gaaaagagagcgactggtca | 579 |
1 | tgaggtgttatgagtttcttcacaagc | gaatcacagcattctttcaagaggtc | 312 |
2 | aggggaaaagttgaggaaag | ggcatttgacttcagtttcca | 241 |
3 | cttcttgaatgtggtgtgatg | gccttacaaaacaatcaacacc | 588 |
4 | caacagaatgttttctgaagtagccc | gcaaaagtggaattacagtgcctatg | 904 |
5 | aaggatgcaattgaatgatcaatactg | cattactgaaaatcatgaggccttacc | 384 |
6 | ttatgaagcaaggtgataggtacgtca | tttaaattccatgcttgaagagtacca | 606 |
7 | ttaagatcttgtgtggcaaacc | aaccagaaatgattcacgggagt | 615 |
8 | aaagattggaaacaaatgcaatcaag | ttgtgaccatttcatccagtataagga | 356 |
9 | tccttatactggatgaaatggtcacaa | tctttcttaggggttaaatggcatcta | 534 |
10 | gcttgtgcagcaatttgaatacct | aagcatgtatttccaatgattggc | 282 |
11 | gctgtcttttgggtaaatgctaaagat | gacaaaatggatagatgaagtatggca | 351 |
12 | cttccattggcagtaattatggagc | gccacaaagtaaatctgaggaaattg | 402 |
13 | aaggtttatattcctggcattggc | ttgtctgcaaactgctggatagg | 909 |
14 | aagaggcacaaacatcaaaggtaactt | aaaccatgtcagaaatgagactaagca | 960 |
15 | ctggaatctcagtatgtcccaatttc | tctgtctttctgccacaaagactagtc | 695 |
16 | ttgaggcactagaggcgtctctt | aacaccgagctagatttgatccg | 576 |
17 | cttgctaatgaatgaccttgcattatc | aatgatcagaaggcatagggtattgac | 427 |
18 | tgaacatcactgttggaggctatg | gcattcaagatgcttttgataaccc | 399 |
19 | catgccctgaacaactttacttgag | aacagaaattggtgtacagtgtcacg | 506 |
20 | ttgctcagttatgtttcacgtactc | ttgaagatcattttattccgaatcca | 535 |
21 | cttcggaagctgagtctaagttttagc | gaagacaggcttccaatatgttaggtc | 353 |
22 | caaacattcttatgtctgtgaaaacc | gaatggtttgggcttatcattgatc | 610 |
23 | atcttctttcttttctgcatgtagcg | AAGATATTTTTGCCAACAGATAAACGC | 515 |
Lowercase letters denote that primer is in the intron, and uppercase letters denote that primer is in the noncoding region of the exon.
The mutation was confirmed by restriction analysis, since the guanine deletion results in the loss of a BslI (ccnnnnnnngg) restriction site (fig. 2). PCR products of 515 bp (fig. 3, upper panel) were generated from genomic DNA by the exon 23 primer pair given in table 2. The PCR products were digested with BslI for 3 h at 55°C and then were resolved by electrophoresis through a 2% agarose gel (fig. 3, lower panel). Normal genomic DNA has two BslI restriction sites within this PCR product and, after digestion, generates fragment sizes of 312 bp, 119 bp, and 84 bp. These fragments were detected in the control (wt), II-6, and III-1. II-6, III-2, and III-3 had digestion products of 431 bp and 84 bp, which indicated a loss of the BslI restriction site.
Despite the presence of the frameshift mutation, the transcript levels in III-2, III-3, and II-6 were determined, by northern blot analysis, to be either normal or somewhat increased (fig. 4). It is known that nonsense and frameshift mutations introduce premature-termination codons (PTCs) into open reading frames, which typically leads to rapid degradation, by the nonsense-mediated decay (NMD) process, of the affected mRNA (for review, see Frischmeyer and Dietz 1999). However, when a PTC occurs in the last exon of the gene, the mRNA may not be subject to NMD (Thermann et al. 1998), thus likely explaining why abundant transcript levels are present in patients with OHS in our study.
Although abundant levels of transcript were detected by northern blots of the affected siblings' mRNA, the predicted protein is truncated and, thus, could be degraded, mislocalized, or both. Western blot analysis of proteins from lymphoblastoid cell lines from the family members, a normal control, and the female patient with Menkes disease and translocation t(X;2)(q13;q32.2) who is known as “CG” (Kapur et al. 1987; Verga et al. 1991) revealed substantially less ATP7A in III-2 and III-3 (fig. 5, upper panel). No protein was detected in CG. Blots were hybridized with tubulin-α Ab-2 antibody (Research Antibody) as a loading control (fig. 5, lower panel). Serial dilutions of normal control protein on western blots were used to estimate that III-2 and III-3 have ∼100-fold less ATP7A than is seen in normal controls. We propose that the ATP7A truncation in the carboxy terminus may lead to either misfolding or destabilization of the protein, resulting in rapid degradation. The truncated protein, with its 13 novel amino acids, may be conformationally incorrect and rapidly degraded in the endoplasmic reticulum (ER), which has a strict quality-control system for secretory and membrane proteins (Zhang et al. 1997; Lord et al. 2000). Alternatively, the carboxy terminus of ATP7A may play a role in its metabolic stability after it exits the ER. Rapid degradation has been observed in (a) protein misfolding resulting from PTC mutations in the final exon of a gene (Kainulainen et al. 1992) and (b) protein destabilization resulting from a C-terminal–tail truncation (Haardt et al. 1999). We postulate that a small percentage of the truncated protein bypasses this quality-control system. The western blot result is consistent with the findings presented by Møller et al. (2000), which suggest that as low as 2%–5% of functional ATP7A is sufficient to result in the milder phenotype, OHS, rather than the more severe phenotype, Menkes disease.
To verify these results and to attempt to localize the truncated protein, we performed immunocytochemistry on cultured fibroblasts. II-6 (not shown) and III-1 (fig. 6a) had normal ATP7A localization, to the perinuclear region, consistent with TGN localization, in cells grown in basal media. ATP7A was not detected in the TGN in III-2 (fig. 6b), III-3 (not shown), or Menkes cell line GM01981 (803del5nt; fig. 6c) (Das et al. 1994). Lack of residual ATP7A perinuclear staining indicated that ATP7A was either mislocalized or present at a level below detection via immunocytochemistry (as would be expected, on the basis of the western blot results). Colocalization experiments with α-KDEL (Grp78; BiP), which is ER specific, and with α-ATP7A demonstrated that the truncated ATP7A was not mislocalized to the ER (data not shown).
Ambrosini and Mercer (1999) described a patient with classic Menkes disease who displayed only the OHS phenotype after early treatment with copper-histidine. Western blot analysis indicated that this patient had normal levels of ATP7A—which was truncated within transmembrane domain (TMD) 7, thus deleting all of TMD8 and the carboxy tail, including the dileucine motif L1487L1488. Immunocytochemistry of fibroblasts from this patient, using an ATP7A antibody, displayed an abundance, above background levels, of diffuse staining. Ambrosini and Mercer (1999) surmised that the protein was mislocalized—most likely to the plasma membrane—owing to the loss of the endocytic signal. Since ATP7A above background levels was not detected in patients with OHS in our study (fig. 6), the immunocytochemistry results support the western blot data and demonstrate that the truncated protein is present at very low levels.
This is the first demonstration, in OHS, of reduced ATP7A at the protein level, but not at the mRNA level. Our findings are consistent with other reports in which reduced levels of functional ATP7A appear to be sufficient to result in OHS; however, the mechanism reported here is novel. In contrast to previous reports, transcript levels are abundant, but the protein level is reduced. In addition, the protein is abnormal and is truncated prior to the dileucine motif L1487L1488, which functions as an endocytic signal. This raises the question of whether the dileucine motif is contributing to the OHS phenotype.
Recent data suggest that steady-state localization of ATP7A to the TGN is necessary for proper activity of lysyl oxidase (Ambrosini and Mercer 1999). It has been hypothesized that, in OHS, the available ATP7A is mislocalized—most likely to the plasma membrane—owing to the low protein levels in relation to the increased intracellular copper levels (Das et al. 1995), thus explaining the decreased lysyl oxidase activity. Our data are consistent with both this hypothesis and the hypothesis that the dileucine motif is not necessary for maintenance of copper efflux from the cell. Because the dileucine motif L14871488 is required for ATP7A to be recycled back to the TGN, we would expect the majority of the ATP7A present in our patients to be at the plasma membrane.
In summary, patients with OHS in our study have a deletion of a guanine in exon 23 of ATP7A, and this deletion leads to a frameshift that results in 13 novel amino acids before premature truncation of the protein, prior to the dileucine motif L1487L1488. We have demonstrated that these patients with OHS have abundant ATP7A-transcript levels but reduced levels of a truncated protein. This is the first report to show an ATP7A truncation that does not result in Menkes disease. This study supports data from Møller et al. (2000), which suggest that as low as 2%–5% of normal levels of functional ATP7A is sufficient to result in the milder phenotype, OHS, rather than the more severe phenotype, Menkes disease. Lower expression of ATP7A in these patients with OHS supports the hypothesis that lysyl oxidase is more sensitive than other cuproenzymes are to copper deficiency, owing to reduced levels of functional ATP7A (Das et al. 1995; Levinson et al. 1996). The fact that our patients have OHS rather than Menkes disease supports the hypothesis that the dileucine motif is not essential for ATP7A activity in efflux of copper from the cell.
Acknowledgments
We are grateful to Herman Dierick and Jianming Fang for their contributions and thank Martin Arlt, Mike Glynn, and Anne Loeb for their suggestions regarding the manuscript. We thank the family for their cooperation. This work was supported by National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, grant DK44130 (to T.W.G.).
Electronic-Database Information
The accession numbers and URLs for data in this article are as follows:
- GenBank, http://www.ncbi.nlm.nih.gov/Genbank/ (for ATP7A [accession number NM_000052])
- Online Mendelian Inheritance in Man (OMIM), http://www.ncbi.nlm.nih.gov/Omim/ (for Menkes disease [MIM 309400] and OHS [MIM 304150])
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