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. 2004 Nov;10(11):1721–1729. doi: 10.1261/rna.7120504

TABLE 1.

The effect of reporter mRNA abundance on PRF efficiency

Strain Reportera β-Gal activityb LacZ mRNA abundancec Corrected β-Gald % PRF correctede
Wild type Control 14.24 (± 1.14) 1.88 7.57 (± 0.60)
Wild type L-A 0.28 (± 0.04) 0.88 0.31 (± 0.05) 4.14 (± 0.74)
upf1Δ Control 15.88 (± 0.94) 2.54 6.25 (± 0.37)
upf1Δ L-A 1.14 (± 0.08) 2.80 0.41 (± 0.05) 6.52 (± 0.90)

alacZ monocistronic reporter plasmids. Control: lacZ in-frame with AUG. L-A: contains L-A derived -1 PRF signal, lacZ in -1 frame with AUG.

bβ-Galacosidase assays were performed in triplicate on at least three separate occasions.

cAverage LacZ mRNA abundance calculated as the ratio of LacZ to 5S rRNA signal from two independent experiments.

dβ-Galacosidase activities were divided by the average LacZ mRNA abundance in each strain.

e% PRF = (corrected β-Gal L-A/corrected β-Gal control) ·100%.