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. 2025 Aug 29;21(9):e70489. doi: 10.1002/alz.70489

Multi‐ancestry meta‐analysis identifies genetic modifiers of age‐at‐onset of Alzheimer's disease at known and novel loci

Elizabeth E Blue 1,2,3,✉, Jai Broome 1,4, Diane Xue 2,5, Hanley Kingston 2,6, Nicola H Chapman 1, Stephanie Gogarten 7; Alzheimer's Disease Genetics Consortium (ADGC), Adam C Naj 8,9, Ellen M Wijsman 1,7,10
PMCID: PMC12397202  PMID: 40883957

Abstract

INTRODUCTION

Much of Alzheimer's disease (AD) risk is explained by age, apolipoprotein E (APOE) genotype, and sex. We sought to identify genetic modifiers of age at onset (AAO) of AD while probing the influence of sex and APOE among those with diverse ancestry.

METHODS

We performed genome‐wide association studies (GWASs) of AAO in two diverse samples followed by meta‐analysis, contrasting results with and without adjustment for sex and APOE. Genome‐wide significance was set to p < 5×10−8.

RESULTS

GWASs adjusting for sex, APOE, population structure, and relatedness revealed 17 significant loci including independent associations at AD risk loci and four novel signals. APOE adjustment influenced GWAS effect sizes across the genome while sex adjustment had minimal effect.

DISCUSSION

We identified association signals within a diverse but relatively small sample, replicating loci recently discovered in large European ancestry‐only GWASs, and illustrated the power of using a quantitative trait like AAO over a binary diagnosis trait.

Highlights

  • Survival analysis approach identified known and novel genetic modifiers of Alzheimer's disease (AD).

  • Multi‐ancestry analyses revealed independent signals at known AD loci.

  • Apolipoprotein E adjustment influenced variant effects across the genome.

Keywords: age at onset, apolipoprotein E, diversity, multi‐ancestry, sex differences

1. BACKGROUND

Age, sex, and apolipoprotein E (APOE) genotype are major risk factors for Alzheimer's disease (AD). The annual incidence of AD increases 19‐fold between the ages of 65 to 70 and 85+ years; the prevalence of AD is one third higher in women than men; 1 and APOE genotype, specifically elevated AD risk with ε4 and the protective effect of ε2, can explain nearly a quarter of AD heritability. 2 Despite this, genome‐wide association studies (GWASs) for AD do not consistently address the effects of age, sex, and APOE genotype in their modeling approaches. This inconsistency complicates the interpretation of meta‐analyses combining results across outcomes and models 3 , 4 and reduces statistical power to detect novel AD susceptibility loci.

While age at onset (AAO) of AD is highly heritable (57%–78%), 5 , 6 relatively few GWASs have considered it as an outcome. 2 , 7 , 8 , 9 , 10 , 11 , 12 , 13 , 14 Analyzing AAO as a censored trait offers improved statistical power relative to a typical case/control design by leveraging age information not only from those affected by the disease but also those who appear protected from AD at older ages. 15 , 16 , 17 Despite their smaller sample sizes, AAO GWASs have replicated 20 AD risk loci and nominated three novel signals near genes associated with molecular or neuropathological changes in AD. 2 , 7 , 8 , 9 , 10 , 11 , 12 , 13 , 14 This suggests that AAO of AD and AD risk share an overlapping, but not necessarily identical, genetic architecture.

Most of the > 150 GWASs of AD risk or AAO represent non‐Hispanic White participants 18 , 19 while other populations remain underrepresented, with underpowered sample sizes unable to detect association signals with comparable effect sizes. 20 Many AD risk loci identified in European ancestry–‐focused GWASs are nominally associated with AD in Black Americans (APOE, ABCA7, BIN1, CASS4, CD33, CELF, CR1, BIN1, EPHA1, NME8), 21 , 22 Caribbean Hispanics (BIN1, CLU, Picalm), 23 and East Asians (ABCA7, BIN1, CD33, CNTNAP2, PICALM, SORL1). 22 , 24 , 25 Many variants associated with AD vary substantially in frequency across continental populations 26 due to the history of human migration (e.g., APOE 27 ). Haplotypic variation at those loci influences effect size estimates 28 and hampers our ability to generalize GWAS results and estimate polygenic risk of disease. 29 , 30 , 31 Local ancestry differences capturing this haplotypic variation have been significantly associated with AD risk near ABCA7, CD33, and GRINB3 in Blacks 32 and at APOE in Hispanics. 33 , 34 Multi‐ancestry analyses offer an alternative strategy to identify genetic variation associated with AD phenotypes while better capturing human diversity 22 , 35 , 36 and offer results that improve the generalizability of polygenic risk scores for AD. 37

Here, we perform a GWAS for AAO of AD in a diverse set of AD cases and controls in both a discovery and replication data set, then meta‐analyze results to detect shared signals. Given the relationships among APOE, ancestry, and AD risk, 19 , 33 , 34 , 38 we explore the effects of APOE adjustment on association signals. We find shared genetic architecture between AD risk and AAO loci, novel loci associated with AAO of AD, and evidence that APOE adjustment alters the association between AAO of AD and variants across the genome.

2. METHODS

2.1. The discovery data set

We gathered controlled‐access genotype array and phenotype data through approved applications to the database of Genotypes and Phenotypes (dbGaP; study accession: phs00496) and the National Institute on Aging Genetics of Alzheimer's Disease Data Storage Site (NIAGADS; study accessions NG00020, NG00022‐NG00024, NG00026, NG00028‐NG00031, NG00034, NG00047, NG00068‐NG00071). Study‐specific sample quality control (QC) required missing < 5% of genotypes as well as pedigree 39 and sex checks 40 to exclude sample swaps. We restricted analysis to those with AD case or control status (excluding mild cognitive impairment), AAO for cases and age ‐at ‐last ‐evaluation (AAE) data for controls, and both sex and APOE genotype data. Where data were available, outliers were excluded where age at death was > 10 years greater than AAO. APOE covariate adjustment used imputed ε2 and ε4 allele dosages to account for uncertainty in genotyping. Samples with discordant observed versus imputed sex or APOE genotype were excluded. When selecting which duplicate sample to exclude, we prioritized those missing phenotype data, then by genotype missingness rate, and finally selected one at random if they otherwise did not differ. Study‐specific autosomal variant QC included genotype completeness ≥ 95%, minor allele frequency (MAF) > 5%, Hardy–Weinberg equilibrium 41 p < 0.01 using the Robust Unified Hardy–Weinberg Equilibrium Test to accommodate population structure within a study, and unambiguous genotypes. Genotypes were aligned to hg19, phased by Eagle v2.4, 42 then imputed 43 to the Trans‐Omics for Precision Medicine (TOPMed) 44 reference panel aligned to hg38 using minimac4 45 as implemented in the TOPMed Imputation Server. 43 Study‐specific imputation QC included average call rate ≥ 0.95 and r 2 ≥ 0.3 for common variants with MAF ≥ 0.05 or r 2 ≥ 0.5 for uncommon variants with MAF < 0.05. Study‐specific imputed genotypes and phenotype data were combined into a single data set. Imputed variants with MAF < 1% or missing ≥ 5% of genotypes in the combined data set were excluded. Samples with missing or discordant observed and imputed ε2/ε3/ε4 genotypes were excluded from APOE‐adjusted GWAS.

RESEARCH IN CONTEXT

  1. Systematic review: The authors performed a literature review of published articles describing genome‐wide association studies of Alzheimer's disease (AD) and age at onset (AAO). Previous studies offer evidence that the association between genotype and AD can vary dramatically in strength, direction of effect, or both when studies vary by major risk factors including age, sex, and ancestry.

  2. Interpretation: Our multi‐ancestry genome‐wide association study of AAO of AD identified shared genetic architecture with AD risk, including novel association signals and independent signals at established AD risk loci. Apolipoprotein E adjustment influenced variant effects genome wide, consistent with a strong relationship with both AD risk and human population structure.

  3. Future directions: Future studies of genome sequence data in independent data sets representing similar levels of population diversity are needed to validate and fine‐map these associations. Functional studies in appropriate cell types are needed to test causal relationships among prioritized variants, genes, and AD.

2.2. The replication data set

The Alzheimer's Disease Genetics Consortium (ADGC) data were imputed to the TOPMed reference as previously described. 35 Data were shared as study‐specific cohorts defined by reported race and ethnicity. We selected a subset of this ADGC data to minimize overlap with the discovery data (ACT‐AA, ACT2, ACT3, ACT3‐AA, ACT3‐Asian, ACT3‐Hispanic, ADC1‐2‐AA, ADC10, ADC10‐AA, ADC10‐Asian, ADC10‐Hispanic, ADC11, ADC11‐AA, ADC11‐Asian, ADC11‐Hispanic, ADC12, ADC12‐AA, ADC12‐Asian, ADC12‐Hispanic, ADC3‐AA, ADC8, ADC8‐AA, ADC8‐Hispanic, ADC9, ADC9‐AA, ADC9‐Hispanic, ADNI, BIOCARD, CHAP‐AA, CHAP2, CHOP‐AA, EAS, GSK, MAYO, MIRAGE300‐AA, MIRAGE600‐AA, NBB, NIALOAD‐NCRAD‐AA, OHSU, PRADI‐Hispanic, REAAADI‐AA, RMayo, TARCC1, TARCC3, TARCC3‐AA, TARCC3‐Hispanic, TARCC4‐Hispanic, UKS, UMVUTARC2, WASHU2, WHICAP). Study‐specific imputation QC included average call rate ≥ 0.95 and r 2 ≥ 0.3 for common variants with MAF ≥ 0.05 or r 2 ≥ 0.5 for uncommon variants with MAF < 0.05. Study‐specific imputed genotypes and phenotype data were combined into a single data set. Sample QC included missing < 5% of genotypes and restricted analysis to those with AD case or control status (excluding mild cognitive impairment), AAO for cases or AAE for controls, and both sex and APOE genotype data. APOE covariate adjustment used imputed allele dosages to account for uncertainty in genotyping. Samples with discordant observed versus imputed sex or APOE genotype were excluded. Imputed variants with MAF < 0.5% or missing ≥ 5% genotypes in the combined data set were excluded.

2.3. Human subjects

This study was approved by the University of Washington Human Subjects Division (STUDY00000240) and was performed in accordance with ethical standards consistent with the 1964 Declaration of Helsinki. This study included data from participants across demographic boundaries including reported sex, race, and ethnicity. As described below, analyses adjusted for relatedness and population structure within the data, improving the generalizability of our results.

2.4. Relatedness and population structure

Relatedness and principal components (PC) analysis was performed on imputed genotypes after QC, filtering variants for MAF > 5%. For each data set, relatedness was initially estimated by KING‐robust 39 after pruning variants for linkage disequilibrium (r 2 < √0.01). Duplicate samples were excluded, prioritizing first those missing phenotype data, then higher genotyping rate, and finally selecting one at random if they otherwise did not differ. PCs accounting for relatedness were first estimated using PC‐AiR 46 then relatedness estimates were recalibrated by PC‐Relate 47 and then these estimates were used for another round of PC‐AiR/PC‐Relate to orthogonally partition PCs and the genetic relatedness matrix (GRM). The most informative PCs were selected using the inflection point of scree plots as well as clustering within pairwise PC plots. To speed GWAS, we used a sparse GRM, setting < fourth‐degree relatedness to zero.

2.5. Association testing

GWAS analyses were restricted to imputed genotypes with MAF ≥ 1% and AAO or AAE. The phenotype was defined as the Martingale residuals from a Cox proportional hazards analysis performed using the survival package in R (v3.5), using AAO of AD for cases and AAE for controls, adjusted for sex, imputed ε2 dosage, imputed ε4 dosage, and the most informative PCs. Using the LMM‐OPS framework, 48 we tested the association between imputed genotypes and this phenotype, adjusting for the most informative PCs with fixed effects and the GRM with random effects.

We performed two secondary GWASs to evaluate the sensitivity to covariate adjustment. The first alternative GWAS mimicked the original GWAS but removed APOE covariates, while the second removed both APOE and sex covariates.

Genomic inflation 49 in the discovery and replication GWAS was measured using λ and linkage disequilibrium (LD) score regression intercepts. 50 Results from the discovery and replication GWAS were meta‐analyzed using Han and Eskin's Random Effects model (RE2) implemented in Metasoft 51 and correcting for genomic inflation of mean effects. Genome‐wide significance was defined as p < 5×10−8, and Manhattan plots were drawn in R. 52

2.6. Interpreting association signals

Hazard ratios for individual markers were estimated by including the marker as a covariate in the same Cox proportional hazards test used to define the associated outcome. The genomic context of GWAS signals was plotted using the locuszoomr (v0.3.5) R package, annotated with LD information from 1000 Genomes Europeans 53 , 54 provided by the LDlinkR R package (v1.4.0) 55 and gene annotations from Ensembl v113 56 provided by the AnnotationHub R package (v3.14.0). Correlation and differences in effect sizes were calculated and illustrated in R.

We sought evidence of replication for loci previously associated with AD risk or AAO of AD. We extracted the lead marker from genome‐wide significant associations with AD risk across 13 major GWASs for AD or proxy AD phenotypes 57 and study‐wide significant associations with AAO 2 , 7 , 8 , 9 , 10 , 11 , 12 , 13 , 14 outside the APOE region (chr19:43,905,796‐45,909,393; hg38). We selected one marker per locus, prioritizing first by strength of evidence of replication, then by effect size, and finally by p value. Because APOC1 is near APOE, we performed a separate search of the GWAS catalog 18 for “APOC1” and reviewed all listings with the reported trait “Alzheimer's disease.”

Variants were connected to target genes using Open Targets Genetics, 58 , 59 https://genetics.opentargets.org/, last updated October 2022. If a variant fell at a known AD GWAS locus, annotation was restricted to the nominated gene for that locus; otherwise, the top candidate was selected based on variant to function (V2F) support. Phenome‐wide association study (PheWAS) data were extracted from the NHGRI/EMBL‐EBI GWAS Catalog, 18 restricted to those with study‐specific p < 5×10−8. Genes were connected to AD biological domains 60 and therapeutic targets using Agora, https://agora.adknowledgeportal.org/, site v3.4.0 and data version syn13363290‐v68. A subset of variants was annotated with allele frequencies in 1000 Genomes/Human Genome Diversity Project (HGDP) reference populations. 53

3. RESULTS

3.1. Diversity within discovery and replication data sets

After QC, the discovery and replication data sets were similarly balanced between cases and controls by sample sizes, age distributions, sex, and APOE genotype frequencies (Table 1). APOE genotype mismatch rates were similar in the discovery and replication sets for ε2 (1.13% vs. 1.87%) while the ε4 mismatch rate was greater in the replication data set (2.29% vs. 5.23%). Sample‐level QC for missing data in the replication data demonstrated a disproportionate effect on cohorts reporting Asian or Black race. Both the discovery and replication data sets are enriched for non‐Hispanic White participants (72% and 63%, respectively), with higher proportions of Hispanic ethnicity and lower proportions of Black race in the discovery data. The discovery data showed relative enrichment of non‐Hispanic White cases and Black controls, but this pattern was less evident in the replication data. PC analysis (PCA) within each data set reveals complex patterns of genetic variation (Figure 1), corresponding to human population structure rather than technical artifacts (Figures S1 and S2 in supporting information).

TABLE 1.

Sample description.

Discovery (n = 22,044) Replication (n = 19,483)
n Controls Cases Controls Cases
Males 4197 4484 4417 2930
Females 6963 6400 7938 4198
Age (years)
Mean 76.3 73.3 74.5 72.5
Min 32 30 43 33
Max 103 102 108 107
Median 77 74 74 73
APOE frequencies
ε2 7.2% 3.5% 7.5% 3.9%
ε4 15.2% 36.4% 15.6% 34.8%
Reported race/ethnicity
Non‐Hispanic White 63.5% 78.7% 61.4% 66.7%
Black 13.5% 3.0% 28.2% 22.9%
Hispanic 22.9% 17.9% 10.4% 10.5%
Other values 0.1% 0.4% 0.0% 0.0%

Notes: Age: age ‐at onset of Alzheimer's disease for cases, age at last evaluation or visit for controls. APOE frequencies and reported race/ethnicity proportions represent only non‐missing values. “Other” values include American Indian/Alaskan Native, Asian/Pacific Islander, and Other demographic categories.

Abbreviation: APOE, apolipoprotein E.

FIGURE 1.

FIGURE 1

Genetic diversity within the discovery and replication data sets. X axis: the first principal component (PC). Y axis: the second PC. Each PC is labeled by the amount of genetic variance explained.

3.2. GWAS for AAO of AD with both sex and APOE adjustment

The discovery GWAS of 9,111,557 variants and 21,736 participants adjusted for sex and APOE ε2 and ε4 dosages identified significant evidence of association between AAO of AD and seven known AD risk loci near APOE, BIN1, CASS4, CR1, HAVCR2, MS4A4A, and PICALM (λ = 1.03, LD score intercept = 1.04; Figure 2A, Table S1 in supporting information). The replication analysis of 8,634,132 variants and 19,483 participants supported each of these signals while no other loci reached genome‐wide significance (λ = 1.03, LD score intercept = 1.04; Figure 2B, Table S1). Meta‐analysis of the discovery and replication GWAS identified 16 genome‐wide significant associations (λ = 1), including 14 known AD risk loci near APOE (APOC1), BIN1, CASS4, CD2AP, CR1, ECHDC3 (LOC105376412), EPHA1, HAVCR2 (ADRA1B), MS4A4A, MYO15A (FBXW10), PICALM, pILRA (NYAP1), SHARPIN, and UMAD1 while adding two new signals: chromosomes 11q13.1 near CATSPERZ and 18p11.21 near LDLRAD4 (Figure 2C, Table 2). Most of these signals had robust support from both the discovery and the replication GWASs (2q14.3 BIN1, 6p12.3 CD2AP, 7p21.3 UMAD1, 7q22.1 NYAP1, 7q34‐q35 EPHA1, 8q24.3 SHARPIN, 10p14 LOC105376412, 11q12.2 MS4A4A, 11q14.2 PICALM, 20q13.31 CASS4) though two showed some attenuation of effect in the replication study (1q32.2 CR1, 19q13.32 APOC1; Table S2 in supporting information). Four signals had both nominally significant evidence of heterogeneity and opposing directions of effect (5q33.3 ADRA1B, 11q13.1 CATSPERZ, 17p11.2 FBXW10, 18p11.21 LDLRAD4).

FIGURE 2.

FIGURE 2

GWAS for AAO of AD, adjusting for sex, ε2, ε4, population structure, and relatedness. A, GWAS in the discovery data. B, GWAS in the replication data. C, Meta‐analysis of discovery and replication GWASs, adjusted for genomic inflation. AAO, age at onset; AD, Alzheimer's disease; GWAS, genome‐wide association study; LDSC, linkage disequilibrium score regression.

TABLE 2.

Genome‐wide significant loci in meta‐analysis of GWAS for AAO of AD, adjusting for sex, APOE genotypes, population structure, and relatedness.

Discovery Replication Meta‐analysis
Locus Gene Variant AAF β SE p AAF β SE p β SE p I 2 (%)

Q

p

1q32.2 CR1 1:207623552:A:T 0.817 −0.078 0.009 6.68E‐17 0.846 −0.051 0.009 1.69E‐08 −0.064 0.014 1.35E‐21 77.30 3.58E‐02
2q14.3 BIN1 2:127135234:C:T 0.404 0.073 0.007 3.16E‐23 0.405 0.058 0.007 3.04E‐19 0.065 0.007 1.52E‐37 52.95 1.45E‐01
5q33.3 HAVCR2 5:159951499:G:A 0.024 −0.130 0.023 1.85E‐08 0.031 0.044 0.018 1.53E‐02 −0.042 0.087 4.43E‐12 97.15 3.21E‐09
6p12.3 CD2AP 6:47586441:G:A 0.255 0.035 0.008 1.67E‐05 0.242 0.031 0.007 2.77E‐05 0.033 0.005 8.70E‐09 0.00 7.32E‐01
7p21.3 UMAD1 7:7816063:G:A 0.555 −0.035 0.007 9.92E‐07 0.538 −0.022 0.006 4.74E‐04 −0.028 0.006 1.87E‐08 41.97 1.89E‐01
7q22.1 pILRA 7:100494172:T:C 0.729 0.039 0.008 1.34E‐06 0.748 0.029 0.007 1.25E‐04 0.033 0.005 4.81E‐09 0.00 3.59E‐01
7q34‐q35 EPHA1 7:143435090:G:A 0.567 0.027 0.007 1.66E‐04 0.524 0.034 0.007 2.49E‐07 0.031 0.005 1.11E‐09 0.00 5.13E‐01
8q24.3 SHARPIN 8:144103704:G:A 0.080 0.067 0.014 2.49E‐06 0.065 0.054 0.014 1.51E‐04 0.061 0.010 8.24E‐09 0.00 5.13E‐01
10p14 ECHDC3 10:11678309:A:G 0.358 0.032 0.008 2.19E‐05 0.331 0.030 0.007 2.21E‐05 0.031 0.005 8.78E‐09 0.00 8.26E‐01
11q12.2 MS4A6A 11:60251788:G:GTA 0.334 −0.042 0.008 5.39E‐08 0.293 −0.043 0.007 3.59E‐09 −0.042 0.005 1.35E‐14 0.00 9.43E‐01
11q13.1 CATSPERZ 11:64301284:T:C 0.933 0.034 0.017 4.75E‐02 0.856 −0.060 0.011 1.20E‐07 −0.014 0.047 7.18E‐09 95.15 5.57E‐06
11q14.2 PICALM 11:86120648:A:G 0.679 0.039 0.008 3.79E‐07 0.704 0.035 0.007 4.23E‐07 0.037 0.005 6.44E‐12 0.00 7.67E‐01
17p11.2 MYO15A 17:18737894:G:A 0.029 −0.065 0.024 5.94E‐03 0.024 0.104 0.024 1.30E‐05 0.019 0.085 1.88E‐08 96.05 4.93E‐07
18p11.21 LDLRAD4  18:13585011:C:T 0.911 0.043 0.012 4.47E‐04 0.916 −0.043 0.012 2.46E‐04 0.000 0.043 2.34E‐08 96.11 3.94E‐07
19q13.32 APOC1 19:44916825:A:C 0.184 0.095 0.015 1.31E‐10 0.137 0.030 0.013 2.43E‐02 0.062 0.033 1.02E‐10 90.76 1.01E‐03
20q13.31 CASS4 20:56414777:T:A 0.095 −0.064 0.012 1.35E‐07 0.112 −0.050 0.010 8.88E‐07 −0.056 0.008 6.77E‐12 0.00 3.82E‐01

Notes: Variant: Chromosome: Position on hg38: Reference allele: Alternate allele; β: Effect size for the alternate allele; Q statistic p value: Evidence for heterogeneity between our discovery and replication studies.

Abbreviations: AAF, alternative allele frequency; AAO, age at onset; AD, Alzheimer's disease; APOE, apolipoprotein E; GWAS, genome‐wide association study; SE, standard error of effect size.

3.2.1. Evidence supporting loci with significant heterogeneity

We investigated the support for each genome‐wide significant locus in the meta‐analysis with strong evidence for heterogeneity and effect size estimates in opposite directions between the discovery and replication data sets. These variants were typically uncommon in both data sets (MAF < 10%), though the lead single nucleotide polymorphism (SNP) at 11q13.1 reached nearly 15% in the replication data. Two of these signals are driven by a strong signal in a single data set (5q33.3 and 11q13.1) with only nominally significant support for an opposing direction of effect in the other data set (p < 0.05). The evidence supporting the other two heterogeneous signals (17p11.2 and 18p11.21) was more modest and more evenly distributed between data sets. LocusZoom plots reveal that each signal, when evident, is supported by multiple variants in a haplotype (Figure 3A). Variation in sample demographics and variation in MAFs across reference populations suggest that the underlying haplotypic variation may vary between our discovery and replication data sets (Figure 3B).

FIGURE 3.

FIGURE 3

Support for heterogeneous meta‐analysis signals. A, Lead variant from meta‐analysis is shown as a purple diamond. Linkage disequilibrium information is specific to 1000 Genomes European samples. Gene labels were restricted to protein coding genes for 11q13.1. B, Minor allele frequency (MAF) variation across 1000 Genomes reference populations. Variants are presented as chromosome:position:reference allele:alternate allele. Reference populations are color coded as gold: admixed Americans; orange: African; magenta: East Asian; purple: European; blue: South Asian.

3.2.2. Relationship with AD risk alleles

To better understand the relationship between our association signals and prior AD GWAS, we compared our evidence of association between AAO of AD and the lead SNP for an AD GWAS signal from the literature 57 (Table 3). Three of our lead SNPs are the most frequently reported lead SNP at the locus across recent AD GWASs: BIN1, ECHDC3, and SHARPIN1 (Figures S3–S5 in supporting information). While our lead SNPs at 1q32.2 (CR1), 7p21.3 (UMAD1), and 11q12.2 (MS4A6A) differed, they were in high LD with the reported SNPs at those loci (r 2 > 0.8) which reached genome‐wide significance in our study (p < 5 × 10−8, Figures S6–S8 in supporting information). Our GWAS refines the known haplotypes associated with AD on 6p12.3 (CD2AP), 7q22.1 (pILRA), 11q14.2 (PICALM), and 20q13.31 (CASS4), with lead SNPs in moderate LD with the reported lead SNPs with attenuated p values in our study (Figures S9–S12 in supporting information). However, our analysis does not support the association between the reported SNPs near EPHA1, HAVCR2, and MYO15A (p > 0.05, Figures 3 and S13 in supporting information), suggesting that our signals at 5q33.3, 7q34‐q35, and 17p11.2 are independent. As ε4 dosage is included in the GWAS model it is not significantly associated with AAO of AD in this study, though the APOC1 variant on 19q13.32 is on the same haplotype in both the discovery and replication data sets (Figure S14 in supporting information). While APOC1 SNPs have been associated with AD, our literature review found no prior genome‐wide significant signal at APOC1 that was independent of the APOE ε2 and ε4 alleles.

TABLE 3.

Comparison of lead variants at known AD GWAS loci.

Discovery Replication
Locus Gene Lead variant HR 95% CI p Known SNP HR 95% CI p r 2 D' r 2 D'
1q32.2 CR1 rs10863417 0.94 0.91‐0.96 1.35E‐21 rs679515 0.94 0.91‐0.97 2.57E‐21 0.96 0.99 0.65 0.99
2q14.3 BIN1 rs6733839 1.07 1.05‐1.08 1.52E‐37 rs6733839 – – – – – – –
5q33.3 HAVCR2 rs62377696 0.96 0.81‐1.14 4.43E‐12 rs6891966 1.01 0.99‐1.02 4.02E‐01 0 0.03 0 0.15
6p12.3 CD2AP rs9395285 1.03 1.02‐1.04 8.70E‐09 rs9381563 0.98 0.97‐0.99 2.49E‐04 0.28 0.99 0.13 0.99
7p21.3 UMAD1 rs10276423 0.97 0.96‐0.98 1.87E‐08 rs6943429 0.97 0.96‐0.99 1.87E‐08 0.89 0.96 0.87 0.95
7q22.1 PILRA rs12539172 1.03 1.02‐1.05 4.81E‐09 rs1859788 1.03 1.02‐1.04 1.18E‐08 0.32 0.92 0.34 0.88
7q34‐q35 EPHA1 rs9640386 1.03 1.02‐1.04 1.11E‐09 rs10808026 0.99 0.97‐1.01 1.17E‐01 0 0.02 0 0.09
8q24.3 SHARPIN rs34173062 1.06 1.04‐1.08 8.24E‐09 rs34173062 – – – – – – –
10p14 ECHDC3 rs7920721 1.03 1.02‐1.04 8.78E‐09 rs7920721 – – – – – – –
11q12.2 MS4A6A rs3041800 0.96 0.95‐0.97 1.35E‐14 rs1582763 0.96 0.95‐0.97 1.59E‐14 0.66 1 0.69 1
11q14.2 PICALM rs472486 1.04 1.03‐1.05 6.44E‐12 rs3851179 1.03 1.02‐1.05 1.78E‐10 0.42 0.85 0.42 0.82
17p11.2 MYO15A rs149428166 1.02 0.86‐1.20 1.88E‐08 rs2242595 0.99 0.97‐1.01 6.38E‐02 0 0.37 0 0.89
19q13.32 APOC1 rs73052335 1.06 1.00‐1.13 1.02E‐10 rs429358 1.06 0.68‐2.56 4.51E‐01 0.27 0.93 0.36 0.91
20q13.31 CASS4 rs6014722 0.95 0.93‐0.96 6.77E‐12 rs6014724 0.96 0.93‐0.98 1.25E‐07 0.54 0.87 0.53 0.75

Notes: Our meta‐analysis results for both the lead variant in this study and the lead SNP from prior AD GWASs are compared, along with their pairwise estimates of linkage disequilibrium within our discovery and replication data sets. Known SNP, Lead variant in prior AD GWAS; r 2, D': Measures of linkage disequilibrium between the lead variants in this study and prior AD GWAS.

Abbreviations: AD, Alzheimer's disease; CI, confidence interval; GWAS, genome‐wide association study; gene: Nominated gene at AD GWAS locus; HR, hazard ratio; SNP, single nucleotide polymorphism.

3.3. Covariate effects

We explored whether differences in model specification might explain the differences between this study and the recent AD GWAS literature focused on case–control status and non‐Hispanic White samples. 3 , 4 , 61 , 62 , 63 , 64 , 65 , 66 , 67 , 68 Prior GWASs of AD cohorts with clinical/pathological diagnoses typically included age and sex as covariates, 61 , 62 whereas GWASs including proxy AD phenotypes (e.g., parental history of dementia) in biobank datasets typically did not adjust for age 3 , 64 , 67 or sex 3 , 64 , 67 or did so inconsistently. 4 , 65 , 68 These proxy‐GWAS also typically meta‐analyzed their results with GWAS summary statistics from studies that included age and/or sex as covariates. None included APOE genotype as a covariate.

3.3.1. Main covariate effects

Each covariate was strongly associated with AAO of AD after adjustment for the first nine PCs, with both data sets offering similar effect size estimates. Female sex was associated with reduced hazard of AD (discovery hazard ratio [HR]: 0.88 [95% confidence interval (CI): 0.84–0.91], p = 2.75 × 10−11; replication HR: 0.87 [95% CI: 0.83–0.91], p = 1.97 × 10−08). Dose of the APOE ε2 allele was associated with a strong protective effect (discovery HR: 0.66 [95% CI: 0.61–0.71], p < 2 × 10−16; replication HR: 0.68 [95% CI: 0.63–0.74]; p < 2 × 10−16). Dose of the APOE ε4 allele was associated with a strong deleterious effect on the hazard of AD (discovery HR: 2.50 [95% CI: 2.43–2.57], p < 2 × 10−16; replication HR: 2.50 [95% CI: 2.41–2.59], p < 2 × 10−16).

3.3.2. GWAS sensitivity to covariates

We performed two additional GWASs to evaluate the sensitivity of our results to covariate adjustment. The first alternative GWAS mimicked our original GWAS but removed APOE covariates while still adjusting for sex, population structure, and relatedness (Figure S15, Tables S2 and S3 in supporting information). The second alternative GWAS further simplified the model by removing sex as a covariate while still adjusting for population structure and relatedness (Figure S16, Tables S4 and S5 in supporting information). Relative to the original GWAS, the two alternative GWASs identified similar numbers of loci reaching significance and shared similar evidence for genomic inflation, but our original model recognized the greatest number of significant loci. Nine loci failed to reach genome‐wide significance across all three meta‐analyses models: 5q33.3, 7p21.3, 7q34‐q35, 12q24.31, 16q23.2, 17p13.2, 17p11.2, 18p11.21, and 19q13.32 (Table S6 in supporting information). The change at 19q13.32, the APOE locus, is to be expected. Most other loci had only modest changes in effect size estimates, but many failed to reach a suggestive threshold in at least one analysis. The signals at 5q33.3, 7q34‐q35, 17p11.2, and 18p11.21 needed APOE covariate adjustment to reach significance, while the signal at 12q24.31 needed sex as a covariate. This suggests that APOE genotype and sex covariates act as precision variables in GWAS for AD‐related traits.

3.3.3. Effect across the genome

Because we saw changes in both effect size and p value across models for some loci outside the APOE region, we explored the extent to which our covariate selection influenced our results across the genome. The inconsistent handling of covariates could possibly explain some of the variable support for previously reported AD GWAS SNPs at shared loci. A comparison of our original GWAS to the first alternative GWAS without APOE adjustment for all autosomes (excluding chromosome 19 where APOE is located) revealed correlated β estimates (r 2 = 0.75), which fluctuated by as much as the magnitude of a genome‐wide significant signal (Figure 4A, B). In contrast, comparison of the two alternative GWASs with and without sex adjustment revealed highly correlated β estimates (r 2 = 0.99) with fluctuations more comparable in magnitude to the standard errors at significant loci (Figure 4C, D). The stronger fluctuations due to APOE adjustment are likely explained by population structure, as the frequency distribution of APOE ε2 and ε4 are correlated with geography. In neither comparison do we see strong outliers.

FIGURE 4.

FIGURE 4

Change in effect size (β) estimates across GWAS models. Top: Contrast effect size estimates from the original GWAS with the first alternative GWAS adjusted for sex but not APOE in panel (A), and the difference between the two values in panel (B). Bottom: Contrast effect size estimates from the first alternative GWAS and the second that did not adjust for sex or APOE in panel (C), and the difference between the two in panel (D). All models adjust for population structure and relatedness. Results on chr19 are excluded to avoid cis effects due to APOE genotype. Dashed line: effect size comparable to the lead variant at 2q14.3 near BIN1. Dotted line: effect size comparable to the lead variant at 6p12.3 near CD2AP. APOE, apolipoprotein E; GWAS, genome‐wide association study.

3.4. Connections between GWAS signals and AD biology

The lead variant at each original AAO GWAS signal (Table 2) was linked to a prioritized gene through its genetic and epigenetic context, then each prioritized gene was linked to AD biology through multi‐omics and systems biology (Table S7 in supporting information). Most variants (13/16, 81%) were linked to their prioritized gene through gene regulation, measured by direct association with transcript abundance (expression quantitative trait loci, eQTLs) or promoter‐gene interactions (promoter capture Hi‐C; Figure 5A). Similarly, nearly all prioritized genes were significantly differentially expressed in the AD brain (15/16, 94%; Figure 5B). Most prioritized genes (11/16, 69%) are robustly associated with late‐onset AD, while the 10p14 locus prioritizing ECHDC3 has also long been associated with AD and family history of AD. 3 , 4 , 22 , 36 , 61 , 62 , 64 , 65 , 69 , 70 The heterogenous signals at 5q33.3 and 17p11.2 do not implicate the AD risk gene at the same locus (Table 3), while their implicated genes have relatively modest links to AD biology: ADRA1B at 5q33.3 is differentially expressed in the AD brain and belongs to the vasculature AD domain, while LGALS9C at 17p11.2 is not associated with gene or protein expression in the AD brain. In contrast, the two novel AAO GWAS signals at 11q13.1 and 18p11.21 implicate genes differentially expressed in the AD brain and involved in multiple AD biological domains: ESRRA is involved in structural stabilization, metal binding and homeostasis, and epigenetic AD domains, while RNMT is involved in the immune response and synapse AD domains. The prioritized genes represent most AD biological domains (16/19, 84%), excepting autophagy, DNA repair, and the RNA spliceosome. While structural stabilization, immune response, and synapse have the strongest support, 7/19 (37%) AD biological domains are implicated by at least a quarter of the prioritized genes (Figure 5C). Half of the prioritized genes have been independently nominated as AD therapeutic targets in Agora.

FIGURE 5.

FIGURE 5

Connections between AAO GWAS hits and AD biology. Detailed annotations are provided in Table S7 in supporting information. A, Lead variants from the AAO GWAS are linked to genes based on their position (“within gene”) and their association with gene expression (“eQTL”), protein expression (“pQTL”), gene splicing (“sQTL”), and gene‐promoter interaction (promoter capture Hi‐C, “PC‐HiC”) as reported in Open Targets Genetics. B, Genes are linked to AD biology based on the strength of their association with AD by the Alzheimer's Disease Sequencing Project's Gene Verification Committee (“AD GWAS”), evidence the gene is differentially expressed (“DEG in AD brain”) or the protein is differentially expressed (“DEP in AD brain”) based on the Accelerating Medicines Partnership Program for Alzheimer's Disease consortium work, and their nomination as a therapeutic target as reported in Agora. C, Distribution of prioritized genes within biological domains linked to AD as reported in Agora, restricted to those supported by 4+ genes. AAO, age at onset; AD, Alzheimer's disease; GWAS, genome‐wide association study.

4. DISCUSSION

4.1. Overview

Despite a relatively modest sample size, our multi‐ancestry GWAS of a powerful survival‐based AAO of AD phenotype revealed new insights into known GWAS loci and nominated new genetic modifiers of AD. Variants at known AD risk loci were significantly associated with AAO of AD while analyzing ≈ 5% (5q33.3, 17p11.2, 8q24.3, 7p21.3) to 50% (20q13.31, 10p14, 7q22.1) the original AD GWAS sample size. We found that APOE adjustment exposed an independent signal on 19q13.32 and influenced variant effect sizes across the genome while sex adjustment did not. Despite the diversity within and between the discovery and replication data sets, our GWAS showed less evidence of polygenicity and genomic inflation than AD GWAS meta‐analyses restricted to non‐Hispanic Whites (smaller λ, comparable LD score regression intercepts) 3 , 4 , 62 , 65 , 66 , 67 while variant associations showed similar levels of heterogeneity. 57

4.2. Shared genetic architecture with AD

Most of the AAO GWAS signals intersected AD risk loci (14/16, 88%). Three of these signals share the same lead variant as AD GWAS restricted to non‐Hispanic Whites (3/14, 21%; rs6733839 near BIN1, rs7920721 near ECHDC3, and rs34173062 in SHARPIN). This suggests these signals are transferable across populations and phenotypic measures. In contrast, six others lead variants are on the same haplotype (high D’) but with different allele frequencies (r 2 < 0.8) than their corresponding AD GWAS lead variant: 6p12.3, 7q22.1, 11q12.2, 11q14.2, 17p11.2, and 19q13.32. In half the cases, the AD GWAS SNP at these loci didn't reach genome‐wide significance, which suggests that fine mapping these loci in diverse populations might identify different drivers of association than those identified in strictly non‐Hispanic White samples. This multi‐ancestry AAO GWAS also uncovered independent signals at three AD GWAS loci: 5q33.3, 7q34‐q35, and 17p11.2. Together, this may help explain the attenuated portability of polygenic risk scores for AD across populations.

4.3. Novel loci associated with AAO of AD

This study identified two loci not previously associated with AD risk and variation at the APOE locus independently associated with AAO of AD. Preliminary research reveals that each novel locus implicates genes and biological processes with established links to AD. The AAO GWAS signal on 11q13.1 implicated ESRRA, the gene encoding estrogen‐related receptor alpha. Agora reports that ESRRA is differentially expressed in the AD brain and involved in the structural stabilization, metal binding and homeostasis, and epigenetic AD domains. ESRRA is also implicated in the pathogenesis of AD by studies of AD microglia, in vitro neuronal cells, and in vivo mouse models of AD. 71 , 72 , 73 The AAO GWAS signal on 18p11.2 implicates RNMT, the gene encoding RNA guanine‐7 methyltransferase. Agora reports both the gene and protein are differentially expressed in AD and involved in both the immune response and synapse AD domains. 60 RNMT plays an important role in mRNA modification with m7G, which has been implicated in aging and AD. 74 Finally, the AAO GWAS signal on 19q33.3 independent of ε2 and ε4 genotypes is driven by rs73052335, an intronic APOC1 variant associated with APOE regulation (Figure 5). This APOC1 variant is most common in European and most rare in African reference populations and associated with an increased hazard of AD; this suggests it may explain some of the protective effect associated with African local ancestry at APOE. 33 , 34

4.4. APOE and sex effects on AAO of AD and GWAS signals

Both female sex and ε2 allele dosage were consistently associated with reduced hazard of AD, while ε4 dosage was associated with a strong and consistent increased hazard of AD. ε2 and ε4 genotypes acted as precision variables in this study, pulling suggestive signals up to significance and shining a light on SNPs within the shadow of APOE. The impact of including precision variables or non‐confounding covariates differs across regression strategies: while adjustment increases precision in linear regression, non‐confounding covariate adjustment can reduce power in logistic regression analyses of case/control status. We therefore recommend, when possible, researchers compare GWAS results from analyses with and without APOE adjustment. In this study, APOE covariate adjustment influenced effect size estimates across the genome. This is consistent with prior AD GWAS, which revealed significant associations that were sharply attenuated in a secondary analysis either adjusting for or stratifying by ε4. 22 , 28 , 69 Rather than a biological interaction, this phenomenon is likely explained by the strong association between ε2 and ε4 with fine‐scale population structure in Europe and across the globe. 75 In contrast, adjusting for sex as a covariate had minimal effect on variant effect sizes across the genome. This indicates that the observed changes in effect size with APOE adjustment are not driven by changes in the number of covariates alone.

4.5. Limitations and future directions

This study has several limitations. Our reliance on imputed data with strict QC eliminated a substantial number of variants (e.g., 19% in the discovery data harmonization). This prevented our study from investigating some known association signals, such as the ABCA7 locus, which was significant in the discovery data but was missing too many genotypes to pass QC in the replication data. This missing data problem severely limits our ability to fine‐map the variant or variants driving the observed association signals. Our meta‐analysis strategy relied on the RE2 model to allow for heterogeneity expected when analyzing imputed markers and diverse data sets, but it can lead to association signals with opposing directions of effect across studies. Age at diagnosis is difficult to precisely measure, and age at last evaluation was not always captured in older data sets. Further analysis of sequence‐level variation in large, diverse data sets ascertained for AD are necessary to determine whether these meta‐analysis signals represent true disease associations rather than background noise. Together, these limitations underscore the need for large, diverse cohorts such as the Alzheimer's Disease Sequencing Project (ADSP) and All of Us, which pair genome sequence and robust phenotypic data to adequately power discovery and validation efforts. 20

CONFLICT OF INTEREST STATEMENT

The authors report no disclosures relevant to the manuscript. Author disclosures are available in the supporting information.

Supporting information

Supporting information

ALZ-21-e70489-s002.pdf (3.1MB, pdf)

Supporting information

ALZ-21-e70489-s001.xlsx (49.2KB, xlsx)

Supporting information

ALZ-21-e70489-s003.pdf (792.9KB, pdf)

ACKNOWLEDGMENTS

The authors thank the study participants and the support of study consortia. Alzheimer's Disease Genetics Consortium (ADGC)—The NIH/NIA supported this work through the following grants: ADGC, U01 AG032984, RC2 AG036528; samples from the National Cell Repository for Alzheimer's Disease (NCRAD), which receives government support under a cooperative agreement grant (U24 AG21886) awarded by the NIA, were used in this study. We thank contributors who collected samples used in this study, as well as patients and their families, whose help and participation made this work possible; data for this study were prepared, archived, and distributed by NIAGADS at the University of Pennsylvania (U24‐AG041689); GCAD, U54 AG052427; Adult Changes in Thought (ACT)—Kaiser Permanente Washington, NIH/NIA U19 AG06656. Alzheimer's Disease Centers/NACC National Alzheimer's Coordinating Center (ADC)—The NACC database is funded by NIA/NIH Grant U24 AG072122. NACC data are contributed by the NIA‐funded ADRCs: P30 AG062429 (PI James Brewer, MD, PhD), P30 AG066468 (PI Oscar Lopez, MD), P30 AG062421 (PI Bradley Hyman, MD, PhD), P30 AG066509 (PI Thomas Grabowski, MD), P30 AG066514 (PI Mary Sano, PhD), P30 AG066530 (PI Helena Chui, MD), P30 AG066507 (PI Marilyn Albert, PhD), P30 AG066444 (PI David Holtzman, MD), P30 AG066518 (PI Lisa Silbert, MD, MCR), P30 AG066512 (PI Thomas Wisniewski, MD), P30 AG066462 (PI Scott Small, MD), P30 AG072979 (PI David Wolk, MD), P30 AG072972 (PI Charles DeCarli, MD), P30 AG072976 (PI Andrew Saykin, PsyD), P30 AG072975 (PI Julie A. Schneider, MD, MS), P30 AG072978 (PI Ann McKee, MD), P30 AG072977 (PI Robert Vassar, PhD), P30 AG066519 (PI Frank LaFerla, PhD), P30 AG062677 (PI Ronald Petersen, MD, PhD), P30 AG079280 (PI Jessica Langbaum, PhD), P30 AG062422 (PI Gil Rabinovici, MD), P30 AG066511 (PI Allan Levey, MD, PhD), P30 AG072946 (PI Linda Van Eldik, PhD), P30 AG062715 (PI Sanjay Asthana, MD, FRCP), P30 AG072973 (PI Russell Swerdlow, MD), P30 AG066506 (PI Glenn Smith, PhD, ABPP), P30 AG066508 (PI Stephen Strittmatter, MD, PhD), P30 AG066515 (PI Victor Henderson, MD, MS), P30 AG072947 (PI Suzanne Craft, PhD), P30 AG072931 (PI Henry Paulson, MD, PhD), P30 AG066546 (PI Sudha Seshadri, MD), P30 AG086401 (PI Erik Roberson, MD, PhD), P30 AG086404 (PI Gary Rosenberg, MD), P20 AG068082 (PI Angela Jefferson, PhD), P30 AG072958 (PI Heather Whitson, MD), P30 AG072959 (PI James Leverenz, MD). Alzheimer's Disease Neuroimaging Initiative (ADNI)—Data collection and sharing for the Alzheimer's Disease Neuroimaging Initiative (ADNI) is funded by the NIH/NIA grant U19 AG024904. The grantee organization is the Northern California Institute for Research and Education. In the past, ADNI has also received funding from the National Institute of Biomedical Imaging and Bioengineering, the Canadian Institutes of Health Research, and private sector contributions through the Foundation for the National Institutes of Health (FNIH) including generous contributions from the following: AbbVie; Alzheimer's Association; Alzheimer's Drug Discovery Foundation; Araclon Biotech; BioClinica, Inc.; Biogen; Bristol‐Myers Squibb Company; CereSpir, Inc.; Cogstate; Eisai Inc.; Elan Pharmaceuticals, Inc.; Eli Lilly and Company; EuroImmun; F. Hoffmann‐La Roche Ltd and its affiliated company Genentech, Inc.; Fujirebio; GE Healthcare; IXICO Ltd.; Janssen Alzheimer Immunotherapy Research & Development, LLC; Johnson & Johnson Pharmaceutical Research &Development LLC; Lumosity; Lundbeck; Merck & Co., Inc.; Meso Scale Diagnostics, LLC; NeuroRx Research; Neurotrack Technologies; Novartis Pharmaceuticals Corporation; Pfizer Inc.; Piramal Imaging; Servier; Takeda Pharmaceutical Company; and Transition Therapeutics. Biomarkers of Cognitive Decline Among Normal Individuals (BIOCARD)—Johns Hopkins University, NIH/NIA U19 AG033655; Chicago Health and Aging Project (CHAP)—Rush University, NIH/NIA R01 AG11101; Einstein Aging Study (EAS)—Einstein College of Medicine, NIH/NIA P01 AG03949; Estudio Familiar de Influencia Genetica en Alzheimer (EFIGA)—Columbia University, NIH/NIA RF1AG015473; Genetic & Environmental Risk Factors for AD Among African Americans (GenerAAtions)—Johns Hopkins BIOCARD, NIH/NIA R01 AG020688; Multi‐Site Collaborative Study for Genotype‐Phenotype Associations in Alzheimer's disease (Genetic Alzheimer's Disease Associations (GenADA/GSK)—Funded by GlaxoSmithKline; Indianapolis African Americans/Ibadan Study of Aging (Indianapolis)—Indianapolis‐Ibadan Dementia Project, NIH/NIA R01 AG009956; Japanese Genetic Study Consortium of Alzheimer's Disease (JGSCAD)—We are very grateful to the members of JGSCAD for the collection of blood samples. The members were listed in previous JGSCAD publications (Kuwano et al., 2006, PMID: 16740596; Miyashita et al., 2007, PMID: 17761686); Japanese Alzheimer's Disease Neuroimaging Initiative (J‐ADNI)—J‐ADNI was supported by the following funding sources: the Translational Research Promotion Project from the New Energy and Industrial Technology Development Organization of Japan; Research on Dementia, Health Labor Sciences Research Grant; the Life Science Database Integration Project of Japan Science and Technology Agency; the Research Association of Biotechnology (Astellas Pharma Inc., Bristol‐Myers Squibb, Daiichi‐Sankyo, Eisai, Eli Lilly and Company, Merck‐Banyu, Mitsubishi Tanabe Pharma, Pfizer Inc., Shionogi & Co., Ltd., Sumitomo Dainippon, and Takeda Pharmaceutical Company), Japan; and a grant from an anonymous foundation. The investigators within J‐ADNI contributed to the design and implementation of J‐ADNI and/or provided data but did not participate in the analysis or the writing of this report. A complete listing of J‐ADNI investigators can be found at https://humandbs.biosciencedbc.jp/en/ hum0043‐j‐adni‐authors; Mayo Clinic Jacksonville (MAYO)—Mayo Clinic, NIH/NIA R01 AG032990, U01 AG046139, RF1 AG051504, P50 AG016574 and NIH/National Institute for Neurological Disorders and Stroke (NINDS) R01 NS080820; Multi‐Institutional Research in Alzheimer's Genetic Epidemiology (MIRAGE)‐Boston University, NIH/NIA R01 AG048927, U01 AG082655; National Institute on Aging Late Onset Alzheimer's Disease Family Study/National Centralized Repository for Alzheimer's Disease/National Centralized Repository for Alzheimer's Disease (NIA‐LOAD/NCRAD)—Columbia University, NIH/NIA U24 AG056270, P30 AG072976; Oregon Health and Science University (OHSU)—Oregon Health and Science University, NIH/NIA P30 AG008017, R01 AG026916; Puerto Rican Alzheimer's Disease Initiative (PRADI)— University of Miami, NIH/NIA RF1 AG054074; Research in African‐American Alzheimer's Disease Initiative (REAAADI)—Wake Forest University & University of Miami, NIH/NIA AG052410; Mayo Clinic Rochester (RMAYO)—Mayo Clinic, NIH/NIA P50 AG016574, P30 AG062677; Religious Orders Study/Memory and Aging Project (ROSMAP)—Rush University, NIH/NIA P30 AG10161 (ROS), R01 AG15819 / R01 AG17917 (MAP); Texas Alzheimer's Research and Care Consortium (TARCC)—The Texas Alzheimer's Research and Care Consortium (TARCC) is funded by the state of Texas through the Texas Council on Alzheimer's Disease and Related Disorders; Translational Genomics Research Institute (TGEN)—Genotyping of the TGEN2 cohort was supported by Kronos Science. The TGen series was also funded by NIH/NIA grant R01 AG041232 to AJM and MJH, The Banner Alzheimer's Foundation; University of Miami/Case Western Reserve University/Mount Sinai School of Medicine/Texas Alzheimer's Research and Care Consortium (UM/CWRU/MSSM, UM/CWRU/TARCC2)—NIH/NIA R01 AG027944, R01 AG028786, R01 AG019085; University of Pittsburgh (UPITT)—NIH/NIA P30 AG066468, R01 AG030653, R01 AG064877; Washington University‐St. Louis (WASHU)—NIH/NIA P50 AG05681, P01 AG03991, P01 AG026276; Washington Heights/Inwood Columbia Aging Project (WHICAP)—Columbia University, NIH/NIA RF1 AG054023. This study was supported by National Institutes of Health (NIH) National Institute on Aging (NIA) grants R01 AG059737 and R21 AG089267 to Elizabeth E. Blue; grants U01 AG058654, U01 AG032984, R01 AG054060, and RF1 AG061351 for Adam C. Naj; and grants U01 AG058589, P50 AG005136, P30 AG066509, and U01 AG049507 for Ellen M. Wijsman. This study analyzed existing genotype and phenotype data accessed through application to the database of Genotype and Phenotype (dbGaP; https://www.ncbi.nlm.nih.gov/gap/), the National Institute on Aging Genetics of Alzheimer's Disease Data Storage Site (NIAGADS; https://dss.niagads.org/), and the Alzheimer's Disease Genetics Consortium (ADGC; https://www.adgenetics.org/). This study was reviewed and approved by the University of Washington Institutional Review Board (IRB; STUDY00000240). All subjects signed IRB‐approved consent forms for the original studies, with details available at the study‐specific dbGaP, NIAGADS, or ADGC resources.

ADGC Collaborators

1.

Farid Rajabli1,2, Penelope Benchek3, Giuseppe Tosto4,5, Gyungah R. Jun6,7,8, Christiane Reitz9,10,5, Nicholas Kushch2, Jin Sha11, Katrina Bazemore11, Congcong Zhu6, Wan‐Ping Lee12, Jacob Haut11, Kara L. Hamilton‐Nelson2, Nicholas R. Wheeler3,13, Yi Zhao12, John J. Farrell6, Michelle A. Grunin3, Yuk Yee Leung12, Pavel P. Kuksa12, Donghe Li6, Eder Lucio da Fonseca2, Jesse B. Mez14, Ellen L. Palmer3, Jagan Pillai15, Richard M. Sherva16, Yeunjoo E. Song13,3, Xiaoling Zhang6,7, Takeshi Ikeuchi17, Taha Iqbal11, Omkar Pathak12, Otto Valladares12, Dolly Reyes‐Dumeyer4,5, Amanda B. Kuzma12, Erin Abner18, Larry D. Adams1, Perrie M. Adams19, Alyssa Aguirre20, Marilyn S. Albert21, Roger L. Albin22,23,24, Mariet Allen25, Lisa Alvarez26, Liana G. Apostolova27,28, Steven E. Arnold29, Sanjay Asthana30,31,32, Craig S. Atwood30,31,32, Stanford Auerbach14, Gayle Ayres20, Clinton T. Baldwin6, Robert C. Barber26, Lisa L. Barnes33,34,35, Sandra Barral4,10,5, Thomas G. Beach36, James T. Becker37, Gary W. Beecham2, Duane Beekly38, Bruno A. Benitez39, David Bennett33,35, John Bertelson40, Thomas D. Bird41,42, Deborah Blacker43,44, Bradley F. Boeve45, James D. Bowen46, Adam Boxer47, James Brewer48, James R. Burke49, Jeffrey M. Burns50, Joseph D. Buxbaum51,52,53, Nigel J. Cairns54, Laura B. Cantwell12, Chuanhai Cao55, Christopher S. Carlson56, Cynthia M. Carlsson32,31, Regina M. Carney57, Minerva M. Carrasquillo25, Scott Chasse58, Marie‐Francoise Chesselet59, Nathaniel A. Chin30,31, Helena C. Chui60, Jaeyoon Chung6, Suzanne Craft61, Paul K. Crane62, David H. Cribbs63, Elizabeth A. Crocco64, Carlos Cruchaga65,66, Michael L. Cuccaro2,1, Munro Cullum19, Eveleen Darby67, Barbara Davis68, Philip L. De Jager69, Charles DeCarli70, John DeToledo71, Malcolm Dick72, Dennis W. Dickson25, Beth A. Dombroski12, Rachelle S. Doody67, Ranjan Duara73, NIlüfer Ertekin‐Taner25,74, Denis A. Evans75, Kelley M. Faber76, Thomas J. Fairchild77, Kenneth B. Fallon78, David W. Fardo79, Martin R. Farlow80, Victoria Fernandez‐Hernandez39, Steven Ferris81, Robert P. Friedland82, Tatiana M. Foroud76, Matthew P. Frosch83, Brian Fulton‐Howard84, Douglas R. Galasko48, Adriana Gamboa85,86, Marla Gearing87,88, Daniel H. Geschwind59, Bernardino Ghetti89, John R. Gilbert2,1, Rodney C.P. Go78, Alison M. Goate51, Thomas J. Grabowski42,90, Neill R. Graff‐Radford25,74, Robert C. Green91, John H. Growdon92, Hakon Hakonarson93,94, James Hall26, Ronald L. Hamilton95, Oscar Harari66, John Hardy96,97, Lindy E. Harrell98, Elizabeth Head99, Victor W. Henderson100,101, Michelle Hernandez71, Timothy Hohman102,103, Lawrence S. Honig4, Ryan M. Huebinger104, Matthew J. Huentelman105, Christine M. Hulette106, Bradley T. Hyman92, Linda S. Hynan19,107,108, Laura Ibanez109,110, Gail P. Jarvik111,112, Suman Jayadev42, Lee‐Way Jin113, Kim Johnson71, Leigh Johnson85, M. Ilyas Kamboh114,115,116, Anna M. Karydas47, Mindy J. Katz117, John S. Kauwe118,119, Jeffrey A. Kaye120,121, C. Dirk Keene122, Aisha Khaleeq67, Masataka Kikuchi17, Ronald Kim99, Janice Knebl85, Neil W. Kowall14,123, Joel H. Kramer124, Walter A. Kukull125, Frank M. LaFerla126, James J. Lah127, Eric B. Larson128, Alan Lerner3, James B. Leverenz15, Allan I. Levey127, Andrew P. Lieberman129, Richard B. Lipton117, Mark Logue6,130,131, Oscar L. Lopez37, Kathryn L. Lunetta7, Constantine G. Lyketsos132, Douglas Mains85,86, Flanagan E. Margaret133,134, Daniel C. Marson98, Eden R R. Martin2,1, Frank Martiniuk135, Deborah C. Mash136, Eliezer Masliah48,137, Paul Massman67, Arjun Masurkar81, Wayne C. McCormick62, Susan M. McCurry138, Andrew N. McDavid56, Stefan McDonough139, Ann C. McKee14,140, Marsel Mesulam133,134, Bruce L. Miller141, Carol A. Miller142, Joshua W. Miller113, Thomas J. Montine143, Edwin S. Monuki144, John C. Morris54,145,146,110, Shubhabrata Mukherjee62, Amanda J. Myers64, Trung Nguyen107, Obisesan Thomas Thomas Obisesan ADGC147, Sid O'Bryant148, John M. Olichney149, Marcia Ory150, Raymond Palmer151, Joseph E. Parisi152, Henry L. Paulson22,24, Valory Pavlik67, David Paydarfar20, Victoria Perez71, Elaine Peskind153, Ronald C. Petersen45, Helen Petrovitch154, Aimee Pierce63, Marsha Polk151, Wayne W. Poon72, Huntington Potter155, Liming Qu12, Mary Quiceno156,157, Joseph F. Quinn120,121, Ashok Raj55, Murray Raskind153, Eric M. Reiman105,158,159,160, Barry Reisberg161,81, Joan S. Reisch68, John M. Ringman162, Erik D. Roberson98, Monica Rodriguear67, Ekaterina Rogaeva163, Howard J. Rosen47, Roger N. Rosenberg107, Donald R. Royall164, Marwan Sabbagh165, A. Dessa Sadovnick166, Mark A. Sager31, Mary Sano53, Andrew J. Saykin76,167, Julie A. Schneider33,35,168, Lon S. Schneider169,60, William W. Seeley47, Susan H. Slifer2, Scott Small4,5, Amanda G. Smith55, Janet P. Smith68, Joshua A. Sonnen122, Salvatore Spina89, Peter St George‐Hyslop170,171, Takiyah D. Starks172,173, Robert A. Stern14, Alan B. Stevens174,175,176, Stephen M. Strittmatter177, David Sultzer178, Russell H. Swerdlow50, Rudolph E. Tanzi92, Jeffrey L. Tilson179, John Q. Trojanowski12, Juan C. Troncoso180, Magda Tsolaki181, Debby W. Tsuang41,153, Vivianna M. Van Deerlin12, Linda J. van Eldik182, Jeffery M. Vance1,2, Badri N. Vardarajan4, Robert Vassar133,134, Harry V. Vinters183,162, Jean‐Paul Vonsattel4, Sandra Weintraub184, Kathleen A. Welsh‐Bohmer49,185, Patrice L. Whitehead2, Kirk C. Wilhelmsen58, Benjamin Williams186, Jennifer Williamson4, Henrik Wilms71, Thomas S. Wingo127, Thomas Wisniewski187,188, Randall L. Woltjer189, Martin Woon40, Clinton B. Wright190, Chuang‐Kuo Wu71, Steven G. Younkin25,74, Chang‐En Yu62, Lei Yu33,35, Xiongwei Zhu191, Brian W. Kunkle1,2, William S. Bush3,13, Miyashita Akinori17, Byrd Goldie192, Li‐San Wang12, Lindsay A. Farrer16,14,8,193,7, Jonathan L. Haines3,13, Richard Mayeux4, Margaret A. Pericak‐Vance1,2, Gerard D. Schellenberg12

1Dr. John T. Macdonald Foundation Department of Human Genetics, Miller School of Medicine, University of Miami, Miami, Florida, USA; 2The John P. Hussman Institute for Human Genomics, University of Miami, Miami, Florida, USA; 3Department of Population and Quantitative Health Sciences, Case Western Reserve University, Cleveland, Ohio, USA; 4Taub Institute for Research in Alzheimer's Disease and the Aging Brain, The Gertrude H. Sergievsky Center, Department of Neurology, Columbia University, New York, New York, USA; 5Department of Neurology, Columbia University, New York, New York, USA; 6Department of Medicine (Biomedical Genetics), Boston University Chobanian & Avedisian School of Medicine, Boston, Massachusetts, USA; 7Department of Biostatistics, Boston University School of Public Health, Boston, Massachusetts, USA; 8Department of Ophthalmology, Boston University Chobanian & Avedisian School of Medicine, Boston, Massachusetts, USA; 9Department of Epidemiology, Columbia University, New York, New York, USA; 10Gertrude H. Sergievsky Center, Columbia University, New York, New York, USA; 11Department of Biostatistics, Epidemiology, and Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA; 12Penn Neurodegeneration Genomics Center, Department of Pathology and Laboratory Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA; 13Cleveland Institute for Computational Biology, Case Western Reserve University, Cleveland, Ohio, USA; 14Department of Neurology, Boston University Chobanian & Avedisian School of Medicine, Boston, Massachusetts, USA; 15Cleveland Clinic Lou Ruvo Center for Brain Health, Cleveland Clinic, Cleveland, Ohio, USA; 16Department of Medicine (Biomedical Genetics), Boston University Chobanian & Avedisian School of Medicine, Boston, Massachusetts, USA; 17Molecular Genetics Division, Brain Research Institute, Niigata University, Niigata, Japan; 18Sanders‐Brown Center on Aging, Department of Epidemiology, College of Public Health, University of Kentucky, Lexington, Kentucky, USA; 19Department of Psychiatry, University of Texas Southwestern Medical Center, Dallas, Texas, USA; 20Department of Neurology, Dell Medical School, University of Texas at Austin, Austin, Texas, USA; 21Department of Neurology, Johns Hopkins University, Baltimore, Maryland, USA; 22Department of Neurology, University of Michigan, Ann Arbor, Michigan, USA; 23Geriatric Research, Education and Clinical Center (GRECC), VA Ann Arbor Healthcare System (VAAAHS), Ann Arbor, Michigan, USA; 24Michigan Alzheimer's Disease Center, University of Michigan, Ann Arbor, Michigan, USA; 25Department of Neuroscience, Mayo Clinic, Jacksonville, Florida, USA; 26Department of Pharmacology and Neuroscience, University of North Texas Health Science Center, Fort Worth, Texas, USA; 27Departments of Neurology, Radiology, and Medical and Molecular Genetics, Indiana University School of Medicine, Indianapolis, Indiana, USA; 28Indiana Alzheimer's Disease Research Center, Indiana University School of Medicine, Indianapolis, Indiana, USA; 29Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA; 30Geriatric Research, Education and Clinical Center (GRECC), University of Wisconsin, Madison, Wisconsin, USA; 31Department of Medicine, University of Wisconsin, Madison, Wisconsin, USA; 32Wisconsin Alzheimer's Disease Research Center, Madison, Wisconsin, USA; 33Department of Neurological Sciences, Rush University Medical Center, Chicago, Illinois, USA; 34Department of Behavioral Sciences, Rush University Medical Center, Chicago, Illinois, USA; 35Rush Alzheimer's Disease Center, Rush University Medical Center, Chicago, Illinois, USA; 36Civin Laboratory for Neuropathology, Banner Sun Health Research Institute, Phoenix, Arizona, USA; 37Departments of Psychiatry, Neurology, and Psychology, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania, USA; 38National Alzheimer's Coordinating Center, University of Washington, Seattle, Washington, USA; 39Department of Psychiatry and Hope Center Program on Protein Aggregation and Neurodegeneration, Washington University School of Medicine, St. Louis, Missouri, USA; 40Department of Psychiatry, University of Texas at Austin/Dell Medical School, Austin, Texas, USA; 41VA Puget Sound Health Care System/GRECC, Seattle, Washington, USA; 42Department of Neurology, University of Washington, Seattle, Washington, USA; 43Department of Epidemiology, Harvard School of Public Health, Boston, Massachusetts, USA; 44Department of Psychiatry, Massachusetts General Hospital/Harvard Medical School, Boston, Massachusetts, USA; 45Department of Neurology, Mayo Clinic, Rochester, Minnesota, USA; 46Swedish Medical Center, Seattle, Washington, USA; 47Department of Neurology, University of California San Francisco, San Francisco, California, USA; 48Department of Neurosciences, University of California San Diego, La Jolla, California, USA; 49Department of Medicine, Duke University, Durham, North Carolina, USA; 50University of Kansas Alzheimer's Disease Center, University of Kansas Medical Center, Kansas City, Kansas, USA; 51Department of Genetics and Genomic Sciences, Ronald M. Loeb Center for Alzheimer's Disease, Icahn School of Medicine at Mount Sinai, New York, New York, USA; 52Department of Neuroscience, Icahn School of Medicine at Mount Sinai, New York, New York, USA; 53Department of Psychiatry, Mount Sinai School of Medicine, New York, New York, USA; 54Department of Pathology and Immunology, Washington University, St. Louis, Missouri, USA; 55USF Health Byrd Alzheimer's Institute, University of South Florida, Tampa, Florida, USA; 56Fred Hutchinson Cancer Research Center, Seattle, Washington, USA; 57Mental Health and Behavioral Science Service, Bruce W. Carter VA Medical Center, Miami, Florida, USA; 58Department of Genetics, University of North Carolina Chapel Hill, Chapel Hill, North Carolina, USA; 59Neurogenetics Program, University of California Los Angeles, Los Angeles, California, USA; 60Department of Neurology, University of Southern California, Los Angeles, California, USA; 61Section of Gerontology and Geriatric Medicine Research, Wake Forest School of Medicine, Winston‐Salem, North Carolina, USA; 62Department of Medicine, University of Washington, Seattle, Washington, USA; 63Department of Neurology, University of California Irvine, Irvine, California, USA; 64Department of Psychiatry and Behavioral Sciences, Miller School of Medicine, University of Miami, Miami, Florida, USA; 65NeuroGenomics and Informatics, Washington University, St. Louis, Missouri, USA; 66Department of Psychiatry, Washington University in St. Louis, St. Louis, Missouri, USA; 67Alzheimer's Disease and Memory Disorders Center, Baylor College of Medicine, Houston, Texas, USA; 68Department of Population and Data Sciences, University of Texas Southwestern Medical Center, Dallas, Texas, USA; 69Center for Translational and Computational Neuroimmunology, Department of Neurology, Columbia University Medical Center, New York, New York, USA; 70Department of Neurology, University of California Davis, Sacramento, California, USA; 71Departments of Neurology, Pharmacology and Neuroscience, Texas Tech University Health Science Center, Lubbock, Texas, USA; 72Institute for Memory Impairments and Neurological Disorders, University of California Irvine, Irvine, California, USA; 73Wien Center for Alzheimer's Disease and Memory Disorders, Mount Sinai Medical Center, Miami Beach, Florida, USA; 74Department of Neurology, Mayo Clinic, Jacksonville, Florida, USA; 75Rush Institute for Healthy Aging, Department of Internal Medicine, Rush University Medical Center, Chicago, Illinois, USA; 76Department of Medical and Molecular Genetics, Indiana University, Indianapolis, Indiana, USA; 77Office of Strategy and Measurement, University of North Texas Health Science Center, Fort Worth, Texas, USA; 78Department of Pathology, University of Alabama at Birmingham, Birmingham, Alabama, USA; 79Sanders‐Brown Center on Aging, Department of Biostatistics, College of Public Health, University of Kentucky, Lexington, Kentucky, USA; 80Department of Neurology, Indiana University, Indianapolis, Indiana, USA; 81Department of Psychiatry, New York University, New York, New York, USA; 82Department of Neurology, University of Louisville School of Medicine, Louisville, KY, USA; 83C.S. Kubik Laboratory for Neuropathology, Massachusetts General Hospital, Charlestown, Massachusetts, USA; 84Department of Neuroscience, Ronald M. Loeb Center for Alzheimer's Disease, Icahn School of Medicine at Mount Sinai, New York, New York, USA; 85Department of Health Behavior and Health Systems, University of North Texas Health Science Center, Fort Worth, Texas, USA; 86Department of Health Management and Policy, School of Public Health, University of North Texas Health Science Center, Fort Worth, Texas, USA; 87Department of Pathology and Laboratory Medicine, Emory University, Atlanta, Georgia, USA; 88Emory Alzheimer's Disease Center, Emory University, Atlanta, Georgia, USA; 89Department of Pathology and Laboratory Medicine, Indiana University, Indianapolis, Indiana, USA; 90Department of Radiology, University of Washington, Seattle, Washington, USA; 91Division of Genetics, Department of Medicine and Partners Center for Personalized Genetic Medicine, Brigham and Women's Hospital and Harvard Medical School, Boston, Massachusetts, USA; 92Department of Neurology, Massachusetts General Hospital/Harvard Medical School, Boston, Massachusetts, USA; 93Center for Applied Genomics, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania, USA; 94Division of Human Genetics, Department of Pediatrics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA; 95Department of Pathology (Neuropathology), University of Pittsburgh, Pittsburgh, Pennsylvania, USA; 96UCL Institute of Neurology, University College London, London, UK; 97Department of Molecular Neuroscience, UCL Institute of Neurology, University College London, London, UK; 98Department of Neurology, University of Alabama at Birmingham, Birmingham, Alabama, USA; 99Department of Pathology and Laboratory Medicine, University of California Irvine, Irvine, California, USA; 100Department of Epidemiology and Population Health, Stanford University, Stanford, California, USA; 101Department of Neurology and Neurological Sciences, Stanford University, Stanford, California, USA; 102Vanderbilt Memory and Alzheimer's Center, Department of Neurology, Vanderbilt University Medical Center, Nashville, Tennessee, USA; 103Vanderbilt Genetics Institute, Division of Genetic Medicine, Department of Medicine, Vanderbilt University Medical Center, Nashville, Tennessee, USA; 104Department of Surgery, University of Texas Southwestern Medical Center, Dallas, Texas, USA; 105Neurogenomics Division, Translational Genomics Research Institute, Phoenix, Arizona, USA; 106Department of Pathology, Duke University, Durham, North Carolina, USA; 107Department of Neurology, University of Texas Southwestern Medical Center, Dallas, Texas, USA; 108Department of Neurological Surgery, University of Texas Southwestern Medical Center, Dallas, Texas, USA; 109Department of Psychiatry, Washington University School of Medicine, St. Louis, Missouri, USA; 110Hope Center Program on Protein Aggregation and Neurodegeneration, Washington University School of Medicine, St. Louis, Missouri, USA; 111Department of Genome Sciences, University of Washington, Seattle, Washington, USA; 112Department of Medicine (Medical Genetics), University of Washington, Seattle, Washington, USA; 113Department of Pathology and Laboratory Medicine, University of California Davis, Sacramento, California, USA; 114Department of Psychiatry, University of Pittsburgh, Pittsburgh, Pennsylvania, USA; 115Department of Human Genetics, University of Pittsburgh, Pittsburgh, Pennsylvania, USA; 116Alzheimer's Disease Research Center, University of Pittsburgh, Pittsburgh, Pennsylvania, USA; 117Department of Neurology, Albert Einstein College of Medicine, New York, New York, USA; 118Department of Neuroscience, Brigham Young University, Provo, Utah, USA; 119Department of Biology, Brigham Young University, Provo, Utah, USA; 120Department of Neurology, Oregon Health and Science University, Portland, Oregon, USA; 121Department of Neurology, Portland Veterans Affairs Medical Center, Portland, Oregon, USA; 122Department of Laboratory Medicine and Pathology, University of Washington, Seattle, Washington, USA; 123Department of Pathology, Boston University, Boston, Massachusetts, USA; 124Department of Neuropsychology, University of California San Francisco, San Francisco, California, USA; 125Department of Epidemiology, University of Washington, Seattle, Washington, USA; 126Department of Neurobiology and Behavior, University of California Irvine, Irvine, California, USA; 127Department of Neurology, Emory University, Atlanta, Georgia, USA; 128Kaiser Permanente Washington Health Research Institute, Seattle, Washington, USA; 129Department of Pathology, University of Michigan, Ann Arbor, Michigan, USA; 130National Center for PTSD at Boston VA Healthcare System, Boston, Massachusetts, USA; 131Department of Psychiatry, Boston University Chobanian & Avedisian School of Medicine, Boston, Massachusetts, USA; 132Department of Psychiatry, Johns Hopkins University, Baltimore, Maryland, USA; 133Department of Pathology, Northwestern University Feinberg School of Medicine, Chicago, Illinois, USA; 134Cognitive Neurology and Alzheimer's Disease Center, Northwestern University Feinberg School of Medicine, Chicago, Illinois, USA; 135Department of Medicine ‐ Pulmonary, New York University, New York, New York, USA; 136Department of Neurology, Miller School of Medicine, University of Miami, Miami, Florida, USA; 137Department of Pathology, University of California San Diego, La Jolla, California, USA; 138School of Nursing Northwest Research Group on Aging, University of Washington, Seattle, Washington, USA; 139Pfizer Worldwide Research and Development, New York, New York, USA; 140Department of Pathology, Boston University Chobanian & Avedisian School of Medicine, Boston, Massachusetts, USA; 141Weill Institute for Neurosciences, Memory and Aging Center, University of California San Francisco, San Francisco, California, USA; 142Department of Pathology, University of Southern California, Los Angeles, California, USA; 143Department of Pathology, Stanford University School of Medicine, Stanford, California, USA; 144Department of Pathology and Laboratory Medicine and Alzheimer's Disease Research Center, University of California Irvine, Irvine, California, USA; 145Department of Neurology, Washington University, St. Louis, Missouri, USA; 146Department of Psychiatry, Washington University School of Medicine, St. Louis Missouri, USA; 147Department of Research Regulatory Compliance, College of Medicine, Howard University, Washington, DC, USA, tobisesan@Howard.edu; 148Institute for Translational Research, University of North Texas Health Science Center, Fort Worth, Texas, USA; 149Center for Mind and Brain and Department of Neurology, University of California Davis, Sacramento, California, USA; 150Center for Population Health and Aging, Texas A&M University Health Science Center, Lubbock Texas, USA; 151Department of Family and Community Medicine, University of Texas Health Science Center San Antonio, San Antonio, Texas, USA; 152Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, Minnesota, USA; 153Department of Psychiatry and Behavioral Sciences, University of Washington School of Medicine, Seattle, Washington, USA; 154Pacific Health Research & Education Institute, VA Pacific Islands Healthcare System, Honolulu, Hawaii, USA; 155Department of Neurology, University of Colorado School of Medicine, Aurora, Colorado, USA; 156Department of Internal Medicine and Geriatrics, University of North Texas Health Science Center, Fort Worth, Texas, USA; 157Department of Medical Education, TCU/UNTHSC School of Medicine, Fort Worth, Texas;, 158Arizona Alzheimer's Consortium, Phoenix, Arizona, USA; 159Banner Alzheimer's Institute, Phoenix, Arizona, USA; 160Department of Psychiatry, University of Arizona, Phoenix, Arizona, USA; 161Alzheimer's Disease Center, New York University, New York, New York, USA; 162Department of Neurology, University of California Los Angeles, Los Angeles, California, USA; 163Tanz Centre for Research in Neurodegenerative Disease, University of Toronto, Toronto, Ontario, Canada; 164Departments of Psychiatry, Medicine, Family and Community Medicine, and the Glenn Biggs Institute for Alzheimer's and Neurodegenerative Diseases, UT Health Science Center at San Antonio, San Antonio, Texas, USA; 165Department of Neurology, Barrow Neurological Institute St. Joseph's Hospital and Medical Center, Phoenix, Arizona, USA; 166Department of Medical Genetics, University of British Columbia, Vancouver, Canada; 167Department of Radiology and Imaging Sciences, Indiana University, Indianapolis, Indiana, USA; 168Department of Pathology (Neuropathology), Rush University Medical Center, Chicago, Illinois, USA; 169Department of Psychiatry, University of Southern California, Los Angeles, California, USA; 170Cambridge Institute for Medical Research, University of Cambridge, Cambridge, UK; 171Faculty of Medicine, Department of Medicine (Neurology), University of Toronto, Toronto, Ontario, Canada; 172Maya Angelou Center for Health Equity, Wake Forest School of Medicine, Winston‐Salem, North Carolina, USA; 173Center for Outreach in Alzheimer's, Aging and Community Health at North Carolina A&T State University, Greensboro, North Carolina, USA; 174Center for Applied Health Research, Baylor Scott & White Health, Temple, Texas, USA; 175Center for Population Health and Aging, Texas A&M University Health Science Center, Lubbock Texas, USA; 176College of Medicine, Texas A&M University Health Science Center, College Station, Texas, USA; 177Program in Cellular Neuroscience, Neurodegeneration and Repair, Yale University School of Medicine, New Haven, Connecticut, USA;, 178Department of Psychiatry and Human Behavior, University of California Irvine, Irvine, California, USA; 179Renaissance Computing Institute, University of North Carolina Chapel Hill, Chapel Hill, North Carolina, USA; 180Department of Pathology, Johns Hopkins University, Baltimore, Maryland, USA; 181Department of Neurology, Aristotle University of Thessaloniki, Thessaloniki, Macedonia; 182Sanders‐Brown Center on Aging, Department of Neuroscience, College of Medicine, University of Kentucky, Lexington, Kentucky, USA; 183Department of Pathology and Laboratory Medicine, University of California Los Angeles, Los Angeles, California, USA; 184Department of Psychiatry and Behavioral Sciences, Northwestern University Feinberg School of Medicine, Chicago, Illinois, USA; 185Department of Psychiatry and Behavioral Sciences, Duke University, Durham, North Carolina, USA; 186Department of Neurology, Section of Gerontology and Geriatric Medicine Research, Wake Forest School of Medicine, Winston‐Salem, North Carolina, USA; 187Department of Psychiatry, New York University Grossman School of Medicine, New York, New York, USA; 188Center for Cognitive Neurology and Departments of Neurology and Pathology, New York University Grossman School of Medicine, New York, USA; 189Department of Pathology, Oregon Health and Science University, Portland, Oregon, USA; 190Evelyn F. McKnight Brain Institute, Department of Neurology, Miller School of Medicine, University of Miami, Miami, Florida, USA; 191Department of Pathology, Case Western Reserve University, Cleveland, Ohio, USA; 192Social Sciences & Health Policy, Wake Forest School of Medicine, Winston‐Salem, North Carolina, USA; 193Department of Epidemiology, Boston University School of Public Health, Boston, Massachusetts, USA.

Blue EE, Broome J, Xue D, et al. Multi‐ancestry meta‐analysis identifies genetic modifiers of age‐at‐onset of Alzheimer's disease at known and novel loci. Alzheimer's Dement. 2025;21:e70489. 10.1002/alz.70489

REFERENCES

  • 1. 2021 Alzheimer's disease facts and figures. Alzheimers Dement 17, 327‐406, doi: 10.1002/alz.12328 (2021). [DOI] [PubMed] [Google Scholar]
  • 2. Zhang Q, Sidorenko J, Couvy‐Duchesne B, et al. Risk prediction of late‐onset Alzheimer's disease implies an oligogenic architecture. Nat Commun. 2020;11:4799. doi: 10.1038/s41467-020-18534-1 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 3. Bellenguez C, Küçükali F, Jansen IE, et al. New insights into the genetic etiology of Alzheimer's disease and related dementias. Nat Genet. 2022;54:412‐436. doi: 10.1038/s41588-022-01024-z [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 4. Wightman DP, Jansen IE, Savage JE, et al. A genome‐wide association study with 1,126,563 individuals identifies new risk loci for Alzheimer's disease. Nat Genet. 2021;53:1276‐1282. doi: 10.1038/s41588-021-00921-z [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 5. Meyer JM, Breitner JC. Multiple threshold model for the onset of Alzheimer's disease in the NAS‐NRC twin panel. Am J Med Genet. 1998;81:92‐97. doi: 10.1002/(sici)1096-8628(19980207)81:1<92::aid-ajmg16>3.0.co;2-r [DOI] [PubMed] [Google Scholar]
  • 6. Pedersen NL, Posner SF, Gatz M. Multiple‐threshold models for genetic influences on age of onset for Alzheimer disease: findings in Swedish twins. Am J Med Genet. 2001;105:724‐728. doi: 10.1002/ajmg.1608 [DOI] [PubMed] [Google Scholar]
  • 7. Huang K, Marcora E, Pimenova AA, et al. A common haplotype lowers PU.1 expression in myeloid cells and delays onset of Alzheimer's disease. Nat Neurosci. 2017;20:1052‐1061. doi: 10.1038/nn.4587 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 8. Kamboh MI, Barmada MM, Demirci FY, et al. Genome‐wide association analysis of age‐at‐onset in Alzheimer's disease. Mol Psychiatry. 2012;17:1340‐1346. doi: 10.1038/mp.2011.135 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 9. Naj AC, Jun G, Reitz C, et al. Effects of multiple genetic loci on age at onset in late‐onset Alzheimer disease: a genome‐wide association study. JAMA Neurol. 2014;71:1394‐1404. doi: 10.1001/jamaneurol.2014.1491 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 10. Le Guen Y, Belloy ME, Napolioni V, et al. A novel age‐informed approach for genetic association analysis in Alzheimer's disease. Alzheimers Res Ther. 2021;13:72. doi: 10.1186/s13195-021-00808-5 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 11. Saad M, Brkanac Z, Wijsman EM. Family‐based genome scan for age at onset of late‐onset Alzheimer's disease in whole exome sequencing data. Genes Brain Behav. 2015;14:607‐617. doi: 10.1111/gbb.12250 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 12. He L, Loika Y, Park Y, Bennett DA, Kellis M, Kulminski AM. Exome‐wide age‐of‐onset analysis reveals exonic variants in ERN1 and SPPL2C associated with Alzheimer's disease. Transl Psychiatry. 2021;11:146. doi: 10.1038/s41398-021-01263-4 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 13. Yashin AI, Fang F, Kovtun M, et al. Hidden heterogeneity in Alzheimer's disease: insights from genetic association studies and other analyses. Exp Gerontol. 2018;107:148‐160. doi: 10.1016/j.exger.2017.10.020 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 14. Harold D, Abraham R, Hollingworth P, et al. Genome‐wide association study identifies variants at CLU and PICALM associated with Alzheimer's disease. Nat Genet. 2009;41:1088‐1093. doi: 10.1038/ng.440 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 15. Vittinghoff E, Glidden DV, Shiboski SC, McCulloch CE. Regression Methods in Biostatistics Statistics for Biology and Health. Springer; 2005. [Google Scholar]
  • 16. Zeggini E, Morris A. Analysis of Complex Disease Association Studies. Academic Press; 2011. [Google Scholar]
  • 17. van der Net JB, Janssens ACJW, Eijkemans MJC, Kastelein JJP, Sijbrands EJG, Steyerberg EW. Cox proportional hazards models have more statistical power than logistic regression models in cross‐sectional genetic association studies. Eur J Hum Genet. 2008;16:1111‐1116. doi: 10.1038/ejhg.2008.59 [DOI] [PubMed] [Google Scholar]
  • 18. Sollis E, Mosaku A, Abid A, et al. The NHGRI‐EBI GWAS Catalog: knowledgebase and deposition resource. Nucleic Acids Res. 2023;51:D977‐D985. doi: 10.1093/nar/gkac1010 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 19. Kamboh MI. Genomics and functional genomics of Alzheimer's disease. Neurotherapeutics. 2022;19:152‐172. doi: 10.1007/s13311-021-01152-0 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 20. Xue D, Blue EE, Conomos MP, Fohner AE. The power of representation: statistical analysis of diversity in US Alzheimer's disease genetics data. Alzheimers Dement (N Y). 2024;10:e12462. doi: 10.1002/trc2.12462 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 21. Reitz C, Jun G, Naj A, et al. Variants in the ATP‐binding cassette transporter (ABCA7), apolipoprotein E 4,and the risk of late‐onset Alzheimer disease in African Americans. JAMA. 2013;309:1483‐1492. doi: 10.1001/jama.2013.2973 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 22. Jun GR, Chung J, Mez J, et al. Transethnic genome‐wide scan identifies novel Alzheimer's disease loci. Alzheimers Dement. 2017;13:727‐738. doi: 10.1016/j.jalz.2016.12.012 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 23. Lee JH, Cheng R, Barral S, et al. Identification of novel loci for Alzheimer disease and replication of CLU, PICALM, and BIN1 in Caribbean Hispanic individuals. Arch Neurol. 2011;68:320‐328. doi: 10.1001/archneurol.2010.292 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 24. Miyashita A, Kikuchi M, Hara N, et al. Genetics of Alzheimer's disease: an East Asian perspective. J Hum Genet. 2023;68(3):115‐124. doi: 10.1038/s10038-022-01050-z [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 25. Kang S, Gim J, Lee J, et al. Potential novel genes for late‐onset Alzheimer's disease in East‐Asian descent identified by APOE‐Stratified genome‐wide association study. J Alzheimers Dis. 2021;82:1451‐1460. doi: 10.3233/JAD-210145 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 26. Huang P, Hsieh S, Chang Y, Hour A, Chen H, Liu C. Differences in the frequency of Alzheimer's disease‐associated genomic variations in populations of different races. Geriatr Gerontol Int. 2017;17:2184‐2193. doi: 10.1111/ggi.13059 [DOI] [PubMed] [Google Scholar]
  • 27. Corbo RM, Scacchi R. Apolipoprotein E (APOE) allele distribution in the world. Is APOE*4 a ‘thrifty’ allele?. Ann Hum Genet. 1999;63:301‐310. doi: 10.1046/j.1469-1809.1999.6340301.x [DOI] [PubMed] [Google Scholar]
  • 28. Kunkle BW, Schmidt M, Klein H, et al. Novel Alzheimer disease risk loci and pathways in African American individuals using the African Genome Resources Panel: a meta‐analysis. JAMA Neurol. 2021;78:102‐113. doi: 10.1001/jamaneurol.2020.3536 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 29. Majara L, et al. Low and differential polygenic score generalizability among African populations due largely to genetic diversity. HGG Adv. 2023;4:100184. doi: 10.1016/j.xhgg.2023.100184 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 30. Kim MS, Patel KP, Teng AK, Berens AJ, Lachance J. Genetic disease risks can be misestimated across global populations. Genome Biol. 2018;19:179. doi: 10.1186/s13059-018-1561-7 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 31. Kamiza AB, Toure SM, Vujkovic M, et al. Transferability of genetic risk scores in African populations. Nat Med. 2022;28:1163‐1166. doi: 10.1038/s41591-022-01835-x [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 32. Hohman TJ, Cooke‐Bailey JN, Reitz C, et al. Global and local ancestry in African‐Americans: implications for Alzheimer's disease risk. Alzheimers Dement. 2016;12:233‐243. doi: 10.1016/j.jalz.2015.02.012 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 33. Blue EE, Horimoto A, Mukherjee S, Wijsman EM, Thornton TA. Local ancestry at APOE modifies Alzheimer's disease risk in Caribbean Hispanics. Alzheimers Dement. 2019;15:1524‐1532. doi: 10.1016/j.jalz.2019.07.016 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 34. Rajabli F, Feliciano BE, Celis K, et al. Ancestral origin of ApoE epsilon4 Alzheimer disease risk in Puerto Rican and African American populations. PLoS Genet. 2018;14:e1007791. doi: 10.1371/journal.pgen.1007791 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 35. Rajabli F, Benchek P, Tosto G, et al. Multi‐ancestry genome‐wide meta‐analysis of 56,241 individuals identifies known and novel cross‐population and ancestry‐specific associations as novel risk loci for Alzheimer's disease. Genome Biol. 2025;26(1):210. doi: 10.1186/s13059-025-03564-z [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 36. Lake J, Warly Solsberg C, Kim JJ, et al. Multi‐ancestry meta‐analysis and fine‐mapping in Alzheimer's disease. Mol Psychiatry. 2023;28:3121‐3132. doi: 10.1038/s41380-023-02089-w [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 37. Jung S, Kim H, Chun MY, et al. Transferability of Alzheimer disease polygenic risk score across populations and its association with Alzheimer disease‐related phenotypes. JAMA Netw Open. 2022;5:e2247162. doi: 10.1001/jamanetworkopen.2022.47162 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 38. Belloy ME, Andrews SJ, Le Guen Y, et al. APOE genotype and Alzheimer disease risk across age, sex, and population ancestry. JAMA Neurol. 2023;80:1284‐1294. doi: 10.1001/jamaneurol.2023.3599 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 39. Manichaikul A, Mychaleckyj JC, Rich SS, Daly K, Sale M, Chen W. Robust relationship inference in genome‐wide association studies. Bioinformatics. 2010;26:2867‐2873. doi: 10.1093/bioinformatics/btq559 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 40. Purcell S, Neale B, Todd‐Brown K, et al. PLINK: a tool set for whole‐genome association and population‐based linkage analyses. Am J Hum Genet. 2007;81:559‐575. doi: 10.1086/519795 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 41. Kwong AM, Blackwell TW, LeFaive J, et al. Robust, flexible, and scalable tests for Hardy‐Weinberg equilibrium across diverse ancestries. Genetics. 2021;218. doi: 10.1093/genetics/iyab044 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 42. Loh P, Danecek P, Palamara PF, et al. Reference‐based phasing using the Haplotype Reference Consortium panel. Nat Genet. 2016;48:1443‐1448. doi: 10.1038/ng.3679 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 43. Das S, Forer L, Schönherr S, et al. Next‐generation genotype imputation service and methods. Nat Genet. 2016;48:1284‐1287. doi: 10.1038/ng.3656 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 44. Taliun D, Harris DN, Kessler MD, et al. Sequencing of 53,831 diverse genomes from the NHLBI TOPMed Program. Nature. 2021;590:290‐299. doi: 10.1038/s41586-021-03205-y [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 45. Fuchsberger C, Abecasis GR, Hinds DA. minimac2: faster genotype imputation. Bioinformatics. 2015;31:782‐784. doi: 10.1093/bioinformatics/btu704 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 46. Conomos MP, Miller MB, Thornton TA. Robust inference of population structure for ancestry prediction and correction of stratification in the presence of relatedness. Genet Epidemiol. 2015;39:276‐293. doi: 10.1002/gepi.21896 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 47. Conomos MP, Reiner AP, Weir BS, Thornton TA. Model‐free estimation of recent genetic relatedness. Am J Hum Genet. 2016;98:127‐148. doi: 10.1016/j.ajhg.2015.11.022 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 48. Gogarten SM, Sofer T, Chen H, et al. Genetic association testing using the GENESIS R/Bioconductor package. Bioinformatics. 2019;35:5346‐5348. doi: 10.1093/bioinformatics/btz567 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 49. Devlin B, Roeder K. Genomic control for association studies. Biometrics. 1999;55:997‐1004. doi: 10.1111/j.0006-341x.1999.00997.x [DOI] [PubMed] [Google Scholar]
  • 50. Bulik‐Sullivan BK, Loh P, Finucane HK, et al. LD Score regression distinguishes confounding from polygenicity in genome‐wide association studies. Nat Genet. 2015;47:291‐295. doi: 10.1038/ng.3211 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 51. Han B, Eskin E. Random‐effects model aimed at discovering associations in meta‐analysis of genome‐wide association studies. Am J Hum Genet. 2011;88:586‐598. doi: 10.1016/j.ajhg.2011.04.014 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 52. R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing; 2024. [Google Scholar]
  • 53. Koenig Z, Yohannes MT, Nkambule LL, et al. A harmonized public resource of deeply sequenced diverse human genomes. Genome Res. 2024;34:796‐809. doi: 10.1101/gr.278378.123 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 54. Genomes Project C, et al. A global reference for human genetic variation. Nature. 2015;526:68‐74. doi: 10.1038/nature15393 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 55. Myers TA, Chanock SJ, Machiela MJ. LDlinkR: an R package for rapidly calculating linkage disequilibrium statistics in diverse populations. Front Genet. 2020;11:157. doi: 10.3389/fgene.2020.00157 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 56. Harrison PW, Amode MR, Austine‐Orimoloye O, et al. Ensembl 2024. Nucleic Acids Res. 2024;52:D891‐D899. doi: 10.1093/nar/gkad1049 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 57. Gao S, Wang T, Han Z, et al. Interpretation of 10 years of Alzheimer's disease genetic findings in the perspective of statistical heterogeneity. Brief Bioinform. 2024;25. doi: 10.1093/bib/bbae140 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 58. Ghoussaini M, Mountjoy E, Carmona M, et al. Open Targets Genetics: systematic identification of trait‐associated genes using large‐scale genetics and functional genomics. Nucleic Acids Res. 2021;49:D1311‐D1320. doi: 10.1093/nar/gkaa840 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 59. Mountjoy E, Schmidt EM, Carmona M, et al. An open approach to systematically prioritize causal variants and genes at all published human GWAS trait‐associated loci. Nat Genet. 2021;53:1527‐1533. doi: 10.1038/s41588-021-00945-5 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 60. Cary GA, Wiley JC, Gockley J, et al. Genetic and multi‐omic risk assessment of Alzheimer's disease implicates core associated biological domains. Alzheimers Dement (N Y). 2024;10:e12461. doi: 10.1002/trc2.12461 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 61. Lambert J, Ibrahim‐Verbaas CA, Harold D, et al. Meta‐analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease. Nat Genet. 2013;45:1452‐1458. doi: 10.1038/ng.2802 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 62. Kunkle BW, Grenier‐Boley B, Sims R, et al. Genetic meta‐analysis of diagnosed Alzheimer's disease identifies new risk loci and implicates Abeta, tau, immunity and lipid processing. Nat Genet. 2019;51:414‐430. doi: 10.1038/s41588-019-0358-2 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 63. Liu JZ, Erlich Y, Pickrell JK. Case‐control association mapping by proxy using family history of disease. Nat Genet. 2017;49:325‐331. doi: 10.1038/ng.3766 [DOI] [PubMed] [Google Scholar]
  • 64. Marioni RE, Harris SE, Zhang Q, et al. GWAS on family history of Alzheimer's disease. Transl Psychiatry. 2018;8:99. doi: 10.1038/s41398-018-0150-6 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 65. Jansen IE, Savage JE, Watanabe K, et al. Genome‐wide meta‐analysis identifies new loci and functional pathways influencing Alzheimer's disease risk. Nat Genet. 2019;51:404‐413. doi: 10.1038/s41588-018-0311-9 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 66. Schwartzentruber J, Cooper S, Liu JZ, et al. Genome‐wide meta‐analysis, fine‐mapping and integrative prioritization implicate new Alzheimer's disease risk genes. Nat Genet. 2021;53:392‐402. doi: 10.1038/s41588-020-00776-w [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 67. de Rojas I, Moreno‐Grau S, Tesi N, et al. Common variants in Alzheimer's disease and risk stratification by polygenic risk scores. Nat Commun. 2021;12:3417. doi: 10.1038/s41467-021-22491-8 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 68. de la Fuente J, Grotzinger AD, Marioni RE, Nivard MG, Tucker‐Drob EM. Integrated analysis of direct and proxy genome wide association studies highlights polygenicity of Alzheimer's disease outside of the APOE region. PLoS Genet. 2022;18:e1010208. doi: 10.1371/journal.pgen.1010208 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 69. Jun G, Ibrahim‐Verbaas CA, Vronskaya M, et al. A novel Alzheimer disease locus located near the gene encoding tau protein. Mol Psychiatry. 2016;21:108‐117. doi: 10.1038/mp.2015.23 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 70. Dalmasso MC, de Rojas I, Olivar N, et al. The first genome‐wide association study in the Argentinian and Chilean populations identifies shared genetics with Europeans in Alzheimer's disease. Alzheimers Dement. 2024;20:1298‐1308. doi: 10.1002/alz.13522 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 71. Tang Y, Min Z, Xiang X, et al. Estrogen‐related receptor alpha is involved in Alzheimer's disease‐like pathology. Exp Neurol. 2018;305:89‐96. doi: 10.1016/j.expneurol.2018.04.003 [DOI] [PubMed] [Google Scholar]
  • 72. Sato K, Takayama KI, Saito Y, Inoue S. ERRalpha and ERRgamma coordinate expression of genes associated with Alzheimer's disease, inhibiting DKK1 to suppress tau phosphorylation. Proc Natl Acad Sci U S A. 2024;121:e2406854121. doi: 10.1073/pnas.2406854121 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 73. Wu D, Bi X, Chow KH. Identification of female‐enriched and disease‐associated microglia (FDAMic) contributes to sexual dimorphism in late‐onset Alzheimer's disease. J Neuroinflammation. 2024;21:1. doi: 10.1186/s12974-023-02987-4 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 74. Wei H, Xu Y, Lin L, Li Y, Zhu X. A review on the role of RNA methylation in aging‐related diseases. Int J Biol Macromol. 2024;254:127769. doi: 10.1016/j.ijbiomac.2023.127769 [DOI] [PubMed] [Google Scholar]
  • 75. Abondio P, Sazzini M, Garagnani P, et al. The genetic variability of APOE in different human populations and its implications for longevity. Genes (Basel). 2019;10. doi: 10.3390/genes10030222 [DOI] [PMC free article] [PubMed] [Google Scholar]

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