Skip to main content
PLOS One logoLink to PLOS One
. 2025 Sep 18;20(9):e0332892. doi: 10.1371/journal.pone.0332892

Inhibition of LncRNA Kcnq1ot1 suppresses hypoxia-induced pyroptosis of H9C2 cells by regulating miR-27b-3p

Yingjie Yang 1,#, Yanchun Ou 1,#, Guanlian Mo 1, Jing Wen 1, Limin Liang 1, Shirong Wang 1, Jinyi Li 1,*
Editor: Zhanzhan Li2
PMCID: PMC12445483  PMID: 40966241

Abstract

Background

Heart failure (HF) is a major cardiovascular disease with high mortality worldwide, whose pathophysiology is multifaceted. Hypoxia has emerged as a critical factor contributing to the progression of heart failure. We aimed to examine the expression and functions of LncRNA Kcnq1ot1 in hypoxia-induced cardiomyocytes in the process of HF.

Methods

H9C2 cell model was simulated by hypoxia treatment. TUNEL, ELISA, Western Blot and qRT-PCR assay were carried out to evaluate cell pyroptosis, inflammation and dysfunction. Subsequently, we identified the direct downstream target of Kcnq1ot1 by bioinformatics analysis, RNA pull-down, double Luciferase reporter gene and other functional experiments.

Results

Firstly, Kcnq1ot1 levels was revealed to be upregulated in hypoxia cells than in control cells, and miR-27b-3p showed the opposite trend. And as expected, inhibition of Kcnq1ot1 and overexpression of miR-27b-3p both protected H9C2 against hypoxia-induced pyroptosis, inflammation and dysfunction. Moreover, miR-27b-3p was proved to bind with Kcnq1ot1 and participated in Kcnq1ot1-mediated H9C2 injury under hypoxia by regulating the Wnt3a/β-Catenin/NLRP3 signaling pathway.

Conclusions

Collectively, our study demonstrated that inhibition of Kcnq1ot1 protected cardiomyocyte against hypoxia-induced injury possibly via sponging miR-27b-3p, which could be useful as biomarkers and therapeutic targets for HF patients.

Introduction

Heart failure (HF) is a multifaceted clinical syndrome characterized by both systolic and diastolic dysfunction, leading to an imbalance between the demand for and supply of oxygenated blood [1]. This debilitating condition affects around 26 million individuals globally and results in over 1 million hospitalizations annually in the United States and Europe [2]. Furthermore, HF significantly contributes to high morbidity and mortality rates, as it elevates the risk of stroke [3]. Although recent advancements in medical and instrumental therapies have shown promise in improving cardiac function, HF continues to be a leading cause of death worldwide [4]. Current treatment strategies remain limited in their ability to alleviate symptoms and halt disease progression, highlighting the urgent need for a deeper understanding of HF to facilitate the development of innovative therapeutic approaches.

Noncoding RNAs (ncRNAs) are a category of RNA molecules that do not code for proteins. Remarkably, about 98% of the human genome consists of ncRNAs [5], which play crucial regulatory roles within extensive communication networks [6]. Among these, long ncRNAs (lncRNAs) and microRNAs (miRNAs) have recently garnered significant attention due to their vital functions in regulating cell proliferation, differentiation, apoptosis, and migration [7,8]. For instance, silencing of XIST improved cardiac function and survival rate and reduced apoptosis and pyroptosis in septic rats in vivo [9].

Recent studies have highlighted the important role of KCNQ1 overlapping transcript 1 (Kcnq1ot1) in cardiac diseases. Silencing Kcnq1ot1 has been shown to reduce pyroptosis and fibrosis in diabetic cardiomyopathy [10]. Additionally, Kcnq1ot1 influences chromatin structure and Kcnq1 expression during heart development [11]. Knockdown of Kcnq1ot1 has also been demonstrated to offer protection against cell apoptosis in cases of myocardial ischemia/reperfusion injury following acute myocardial infarction (AMI) [12].

LncRNAs have been shown to influence messenger RNA (mRNA) expression through a competing endogenous RNA (ceRNA) regulatory network at the post-transcriptional level [13]. This ceRNA mechanism involves lncRNAs competing with mRNAs for binding to miRNAs, thereby reducing the inhibitory effects of miRNAs on mRNA targets [14]. The ceRNA network involving Kcnq1ot1 has been extensively studied. For example, kcnq1ot1 promotes macrophage lipid accumulation and accelerates the development of atherosclerosis through the miR-452-3p/HDAC3/ABCA1 pathway [15].

In our prior research, we investigated the alleviation of atrial fibrosis (AF) in atrial fibrillation rats by Wnt3a-targeted regulation of the signaling of Wnt/β-Catenin through miR-27b-3p overexpression [16].

Given these findings, we aim to examine the function and the potential ceRNA role of lncRNAKcnq1ot1 and miR-27b-3p in hypoxia-caused cardiomyocytes.

Materials and methods

Cell culture and treatment

H9C2 cells (Pricella, China) were propagated in the dulbecco’s modified eagle medium (DMEM) culture medium (Gibco, China) with 10% FBS (Excell Bio, China) and 1% Penicillin-Streptomycinas (P/S, Beyotime, China) as supplements at 37°C supplied with 5% CO2. To make hypoxic injury, H9C2 cells were incubated in a hypoxic incubator containing 5% CO2, 94% N2 and 1% O2 for 12h then cultured with the normal medium in a normoxic incubator for 2h.

Cell transfection

si-Kcnq1ot1, miR-27b-3p inhibitor, miR-27b-3p mimic, and their respective negative controls (NC) were purchased from Ribobio (Guangzhou, China). An equal amount of H9C2 cells were seeded in a 6-well plate and Lipofectamine 3000 transfection reagent (ThermoFisher, USA) and used for cell transfection. The transfection time was 24h.

RNA extraction and quantitative real-time PCR (qRT-PCR)

Based on the supplier’s instruction, total RNA samples were extracted with Cell/Tissue Total RNA Isolation Kit V2 (RC112, Vazyme, China) and used for generating cDNA with HiScript lll 1st Strand cDNA Synthesis Kit (R312, Vazyme, China). Taq Pro Universal SYBR qPCR Master Mix (Q712, Vazyme, China) was acquired for qRT-PCR. Relative gene expression was standardized to GAPDH or U6 after calculating with 2−ΔΔCT method.

The primer sequence is as follows: Kcnq1ot1: forward: 5’-TATGGCAAAACCCGGATGGG-3’; reverse: 5’-TGGCTAGTCCCGATAGGGTG-3’. miR-27b-3p: forward: 5’- GCGCGTTCACAGTGGCTAAG-3’; reverse: 5’-AGTGCAGGGTCCGAGGTATT-3’. GAPDH: forward: 5’-CCCTTAAGAGGGATGCTGCC-3’; reverse: 5’-TACGGCCAAATCCGTTCACA-3’. U6: forward: 5’-GGAGACACGCAAACGGAAG-3’; reverse: 5’-AGTGCAGGGTCCGAGGTATT-3’.

Western blot (WB)

Total protein in cells was extracted by using RIPA lysis buffer (Beyotime, China). The proteins were separated by SDS PAGE and were transferred onto PVDF membranes. After blocking for 1h at room temperature with 5% non-fat milk in Tris buffered saline-0.01% Tween 20 (Biosharp, China), the membranes were incubated with primary antibodies at 4°C overnight for detection of Wnt3a (26744–1-AP, Proteintech, China), β-Catenin (A19657, ABclonal, China), p-β-Catenin (AP1076, ABclonal, China), NLRP3 (A5652, ABclonal, China), Caspase-1 (31020–1-AP, Proteintech, China), Fibronectin (66042–1-Ig, Proteintech, China), Collagen III (ab184993, Abcam, UK) and β-tubulin(66240–1-Ig, Proteintech, China). After three washes with Tris buffered saline-0.01% Tween 20, the membranes were incubated with the corresponding secondary antibody for 1h at room temperature. The signals were developed by using the chemiluminescence detection kit (NCM Biotech, China), and the blots were finally monitored via ECL detection system (JP-K600, China).

Enzyme-linked immunosorbent assay (ELISA)

Concentrations of interleukin (IL)-1β and IL-18 in the culture medium were determined using ELISA kits (COIBOBIO, China). The optical value of each well was determined at 450 nm using a microplate reader and converted to the corresponding concentration according to the standard curve.

TdT-mediated dUTP Nick-End Labeling (TUNEL) assay

TUNEL Apoptosis Assay Kit was produced by Beyotime (C1088, China) and acquired for assessing the cell samples in accordance with the user manual. After washing in phosphate buffer saline (PBS), cell samples were probed with TUNEL detection kit after permeabilization. Cell nuclei were counterstained with 4’,6-diamidino-2-phenylindole (DAPI), then estimated with optical microscopy.

Immunofluorescence (IF) staining

H9C2 cells or primary cardiomyocytes were fixed, permeabilized and blocked. Then, the cells were incubated with GSDMD-N antibody (CST, USA) at 4°C overnight and incubated with Cy3-conjugated secondary antibody (Yeasen, China) in a dark room at 37°Cfor 1h. DAPI was used for nucleus staining. Cells were then observed under optical microscopy and representative images were captured.

Dual-luciferase reporter assays

The wild-type (WT) and mutated (MUT) Kcnq1ot1 fragments covering the miR-27b-3p binding sites were synthesized and inserted into pmirGLO luciferase Vector, termed Kcnq1ot1-Wt/Mut reporter vectors. The H9C2 cells were co-transfected with Kcnq1ot1 WT/MUT and miR-27b-3p mimic/NC. After incubation, cells were collected to measure the firefly and renilla luciferase activity using the Luciferase Assay kit (Beyotime, China). Relative luciferase activity was normalized using the renilla luciferase activity.

RNA pull down

The RNA extracts from H9C2 samples were cultivated with the biotin-labelled Kcnq1ot1 probe (Kcnq1ot1 biotin probe) or Kcnq1ot1 no-biotin probe as NC, along with the magnetic beads for 1h. The pulled-down complex was monitored by qRT-PCR method.

RNA immunoprecipitation (RIP) assay

The H9C2 samples in RIP lysis buffer were harvested and mixed with the magnetic beads-bound specific antibody to Argonaute2 (Ago2) or Immunoglobulin G (IgG) as NC in the RIP buffer for 1h. Precipitated RNAs were subjected to qRT-PCR analysis for confirming the presence of binding sites.

Statistics

Data were analyzed and plotted using Graphpad 9 (Version 9.4). AI 2023 collates the graph. All data were represented by means±SD, and the statistical difference between groups was tested by t-test or one-way test, and the p value<0.05 was considered as significant difference.

Results

Hypoxia induces inflammation, myocardial remodeling, and pyroptosis of cells

The Wnt signaling pathway plays a crucial role in cardiac development, cell proliferation, and differentiation [17,18]. In HF, abnormal activation of the Wnt signaling pathway may lead to pathological remodeling of myocardial cells, including fibrosis [19], apoptosis [20] and pyroptosis [21]. As expected, compared to the normoxia control group, we observed a significant activation of the Wnt signaling pathway in H9C2 cells in the hypoxia group, which was evidenced by an increase in Wnt3a, a decrease in p-β-Catenin, and an increase in β-Catenin at the protein levels (Fig 1A). Studies have demonstrated that the activation of the Wnt signaling pathway may influence the activation of the NLRP3 inflammasome, which subsequently activates Caspase-1, leading to the production of IL-1β and IL-18, thereby triggering an inflammatory response [22,23]. In our study, we measured the increased levels of NLRP3, Caspase-1, IL-1β, and IL-18 in hypoxic cells using qRT-PCR, WB, or ELISA (Fig 1B-C), proving the activation of this pathway in hypoxia induced cardiomyocytes. Fibronectin and Collagen III, as critical components of the extracellular matrix (ECM), also play significant roles in the onset and progression of HF [24]. They influence the structure and function of the heart by participating in processes such as myocardial remodeling, inflammatory responses, and fibrosis [25]. In our study, we also assessed the increased levels of them in hypoxic cells using qRT-PCR and WB (Fig 1D). Myocardial pyroptosis is an important contributor to the onset and progression of heart failure, as it promotes inflammatory responses, leads to the release of cytokines, and facilitates myocardial remodeling [26,27]. Using TUNEL staining and IF for GSDMD-N, we measured the levels of pyroptosis and found that they were elevated in hypoxic H9C2 cells (Fig 1EF). These data collectively indicated that hypoxia triggered inflammatory responses, myocardial remodeling, and pyroptosis in H9C2 cells, potentially through the Wnt3a/β-Catenin/NLRP3 signaling pathway.

Fig 1. Effect of hypoxia on H9C2 cells.

Fig 1

(a) Protein levels of Wnt3a, p-β-Catenin and β-Catenin were detected by WB. (b) Protein levels of NLRP3 and Caspase-1 were detected by WB. (c) Levels of IL-1β and IL-18 were detected by ELISA. (d) Protein levels of Fibronectin and Collagen III were detected by WB. (e) TUNEL staining. (f) IF for GSDMD-N in the normoxia control group and hypoxia group. n = 3, *p < 0.05, **p < 0.01, ***p < 0.001.

Inhibition of lncRNA Kcnq1ot1 attenuates hypoxia-induced cell damage

To start with, we observed that the level of Kcnq1ot1 was significantly increased in hypoxia group as compared to the control group (Fig 2A). To further explore the functional effects of Kcnq1ot1 on hypoxia-injured H9C2 cells, si-Kcnq1ot1 or si-NC was transfected into H9C2 cells, and the si-Kcnq1ot1 was successfully silenced (Fig 2B). Further functional assay results showed that cell damages triggered by hypoxia were attenuated when Kcnq1ot1 was silenced. As compared to the Hypoxia+si-NC group, the Wnt signaling pathway (Fig 2CD), inflammatory responses (Fig 2EG), ECM components (Fig 2HI), and cell pyroptosis (Fig 2JK) were decreased in the Hypoxia+si-Kcnq1ot1 group. These data collectively indicated that inhibition of Kcnq1ot1 could attenuates hypoxia-induced cell damage.

Fig 2. Effect of Kcnq1ot1 inhibiting on hypoxia-injured H9C2 cells.

Fig 2

(a) RNA level of Kcnq1ot1 by qRT-PCR in the normoxia control group and hypoxia group. (b) RNA levels of Kcnq1ot1 by qRT-PCR in the si-NC group and si-Kcnq1ot1 group. (c) mRNA level of Wnt3a, p-β-Catenin and β-Catenin by qRT-PCR. (d) Protein levels of NLRP3 and Caspase-1 by WB. (e) mRNA level of NLRP3 and Caspase-1 by qRT-PCR. (f) Protein level of NLRP3 and Caspase-1 by WB. (g) Levels of IL-1β and IL-18 by ELISA. (h) mRNA levels of Fibronectin and Collagen III by qRT-PCR. (i) Protein levels of Fibronectin and Collagen III by WB. (j) TUNEL staining. (k) IF for GSDMD-N in the Hypoxia+si-NC group and the Hypoxia+si-Kcnq1ot1 group. n = 3, *p < 0.05, **p < 0.01, ***p < 0.001.

miR-27b-3p attenuates hypoxia-induced cell damage

In our prior research, we investigated the alleviation of AF in atrial fibrillation rats by Wnt3a-targeted regulation of the signaling of Wnt/β-Catenin through miR-27b-3p overexpression [16]. Therefore, we also want to verify the role of miR-27b-3p in this hypoxic cell model. We firstly observed that the level of miR-27b-3p was significantly decreased in hypoxia group as compared to the control group (Fig 3A), and miR-27b-3p mimic or NC was successfully transfected into H9C2 cells (Fig 3B). Further functional assay results showed that cell damages introduced by hypoxia were attenuated when Kcnq1ot1 was silenced. As compared to the NC group, the Wnt signaling pathway (Fig 3CD), inflammatory responses (Fig 3EG), ECM components (Fig 3HI), and cell pyroptosis (Fig 3JK) were decreased in the miR-27b-3p mimic group. These data collectively indicated that miR-27b-3p could attenuates hypoxia-induced cell damage, similar to Kcnq1ot1 silencing.

Fig 3. Effect of miR-27b-3p on hypoxia-injured H9C2 cells.

Fig 3

(a) RNA levels of miR-27b-3p by qRT-PCR in the normoxia control group and hypoxia group. (b) RNA levels of miR-27b-3p by qRT-PCR. (c) mRNA levels of Wnt3a, p-β-Catenin and β-Catenin by qRT-PCR. (d) Protein levels of NLRP3 and Caspase-1 by WB. (e) mRNA levels of NLRP3 and Caspase-1 by qRT-PCR. (f) Protein levels of NLRP3 and Caspase-1 by WB. (g) Levels of IL-1β and IL-18 by ELISA. (h) mRNA levels of Fibronectin and Collagen III by qRT-PCR. (i) Protein levels of Fibronectin and Collagen III by WB. (j) TUNEL staining. (k) IF for GSDMD-N in the mimic-NC group and the miR-27b-3p mimic group. n = 3, *p < 0.05, **p < 0.01, ***p < 0.001.

LncRNA Kcnq1ot1 works as a sponge for miR-27b-3p

To analyse the molecular mechanism, the subcellular localization of Kcnq1ot1 was predicted through the LncATLAS website (http://lncatlas.crg.eu/) [28], predicting that lncRNA MIAT might be located in the nucleus (Fig 4A). And a nuclear/cytosol fractionation assay confirmed that Kcnq1ot1 was mainly expressed in the nucleus (Fig 4B). In order to reveal whether Kcnq1ot1 functioned to H9C2 cells in miR-27b-3p mediated signaling, the regulatory relationship between them was studied. qRT-PCR data showed that transfection of cells with si-Kcnq1ot1 significantly up-regulated miR-27b-3p expression, when compared to si-NC group (Fig 4C), which indicated that miR-27b-3p was negatively regulated by Kcnq1ot1. Then, bioinformatics analysis showed that Kcnq1ot1 contains a binding site of miR-27b-3p (Fig 4D).

Fig 4. Effect of Kcnq1ot1 on miR-27b-3p. (a) Subcellular localization of Kcnq1ot1 predicted through the LncATLAS website.

Fig 4

(b) The possible major expression of Kcnq1ot1 in the nucleus of cardiomyocytes via nuclear/cytosolic fractionation assay. (c) RNA levels of miR-27b-3p by qRT-PCR in the si-NC group and si-Kcnq1ot1 group. (d) The binding sites between Kcnq1ot1 and miR-27b-3p utilizing starBase. (e) RNA pull down assay of the binding between Kcnq1ot1 and miR-27b-3p. (f) Luciferase reporter assay of the combination between Kcnq1ot1 and miR-27b-3p. n = 3, *p < 0.05, **p < 0.01, ***p < 0.001.

To validate whether Kcnq1ot1 could directly bind with miR-27b-3p, the affinity between them was researched by RNA pull down assay in H9C2 cells, and the results demonstrated that miR-27b-3p was enriched in Kcnq1ot1 biotin group (Fig 4E), suggesting that miR-27b-3p might bind with Kcnq1ot1. For the further exploration of the regulation of Kcnq1ot1 on miR-27b-3p, luciferase reporter assay was performed. The luciferase activity of Kcnq1ot1-WT reporter was suppressed by enforced expression of miR-27b-3p, while that of Kcnq1ot1-MUT reporter was not affected (Fig 4F). Our previous research has validated the interaction between miR-27b-3p and Wnt3a using a firefly luciferase reporter gene [16]. Therefore, based on the above data, we speculate that Kcnq1ot1 competes with miR-27b-3p to enhance the expression of Wnt3a.

Inhibition of Kcnq1ot1 protects H9C2 cells against hypoxia-induced cell damage via up-regulation of miR-27b-3p

In order to validate the abovementioned hypothesis, an inhibitor specific for miR-27b-3p was transfected into H9C2 cells. The expression of miR-27b-3p was significantly decreased in miR-27b-3p inhibitor group than that in the NC group (Fig 5A). Of note, the Wnt signaling pathway (Fig 5BC), inflammatory responses (Fig 5DF), ECM components (Fig 5GH), and cell pyroptosis (Fig 5IJ) were increased in the Hypoxia+si-Kcnq1ot1+miR-27b-3p inhibitor group, than those in Hypoxia+si-Kcnq1ot1+inhibitor-NC group. Collectively, it seems that the effects of Kcnq1ot1 are impeded when miR-27b-3p is knocked down. Thus, we preliminarily conclude that inhibition of Kcnq1ot1 promotes the activation of Wnt3a/β-Catenin/NLRP3 signaling pathways and cell pyroptosis possibly via regulating miR-27b-3p.

Fig 5. Effect of miR-27b-3p suppression together with Kcnq1ot1 inhibiting on hypoxia-injured H9C2 cells.

Fig 5

(a) RNA levels of miR-27b-3p by qRT-PCR in the inhibitor-NC group and miR-27b-3p inhibitor group. (b) mRNA levels of Wnt3a, p-β-Catenin and β-Catenin by qRT-PCR. (c) Protein levels of NLRP3 and Caspase-1 by WB. (d) mRNA levels of NLRP3 and Caspase-1 by qRT-PCR. (e) Protein levels of NLRP3 and Caspase-1 by WB. (f) Levels of IL-1β and IL-18 by ELISA. (g) mRNA levels of Fibronectin and Collagen III by qRT-PCR. (h) Protein levels of Fibronectin and Collagen III by WB. (i) TUNEL staining. (j) IF for GSDMD-N in the Hypoxia+si-Kcnq1ot1+inhibitor-NC group and the Hypoxia+si-Kcnq1ot1+miR-27b-3p inhibitor group. n = 3, *p < 0.05, **p < 0.01, ***p < 0.001.

Discussion

Hypoxia could result in myocardial cell injuries, which further lead to the initiation of several cardiovascular diseases, including HF and AMI. It is significant to find key molecules that protect cardiomyocytes from hypoxia-caused injury. The hypothesis of the present study was that inhibition of Kcnq1ot1 could protect H9C2 cells against hypoxia-introduced cell injury. Therefore, based on previous research, predictions from the database, interaction experiment and functional assay, this study found that Kcnq1ot1 was upregulated in hypoxia cells and miR-27b-3p showed the opposite trend, inhibition of Kcnq1ot1 and overexpression of miR-27b-3p both protected H9C2 against hypoxia-induced pyroptosis, inflammation and dysfunction. Moreover, miR-27b-3p was confirmed as the target of Kcnq1ot1 and participated in Kcnq1ot1-mediated H9C2 injury under hypoxia by regulating the Wnt3a/β-Catenin/NLRP3 signaling pathway (Fig 6).

Fig 6. Schematic of Kcng1ot1/miR-27b-3p/Wnt3a axis under hypoxia.

Fig 6

Kcnq1ot1 sequesters miR-27b-3p to activate Wnt3a/β-Catenin/NLRP3-mediated pyroptosis, fibrosis and inflammation.

A growing number of lncRNAs have been linked to various kinds of cardiovascular diseases. For instance, increased expression of LncRNA Kcna2 Antisense RNA led to an increased incidence of ventricular arrhythmias in association with heart failure [29]. LncRNA UCA1 was able to promote the progression of cardiac hypertrophy, a condition associated with a series of cardiovascular diseases, including heart failure [30]. In our study, we explored the functional role of Kcnq1ot1, in hypoxia-injured H9C2 cells, aiming to evaluate the importance of Kcnq1ot1 in HF caused by myocardial infarction. It is worth noting that in non-cardiovascular fields, we have also found examples of Kcnq1ot1 activating the Wnt/β-catenin signaling pathway [31], as well as examples of Kcnq1ot1 promoting cell pyroptosis by inhibiting miRNA and upregulating NLRP3 [32], which had something in common with our study. In cardiovascular fields, Li et al have revealed the role of Kcnq1ot1 to induce H9C2 apoptosis in myocardial ischemia/reperfusion (I/R), which is a major cause for AMI [33], while our study focused on molecular mechanism of hypoxia-induced cell damage during the process of HF. The following limitations should be taken into consideration as interpreting our findings. We performed our study in H9C2, but it may not tell the whole story concerning the exact mechanisms of Kcnq1ot1, which could not be extrapolated to primary cell level and animal level, even if they share some similarities. Moreover, our findings may be useful as biomarkers and therapeutic targets for HF, but further studies in rats and clinical trials are warranted to dissect its mechanisms and clinical application.

Conclusion

Collectively, this paper discussed the ceRNA role of Kcnq1ot1 in hypoxia-induced cardiomyocytes. Kcnq1ot1 elevated Wnt3a expression to facilitate cardiomyocyte injury via sequestering miR-27b-3p, shedding a new light on the pathogenesis of HF.

Supporting information

S1 File. Raw images.

(PDF)

pone.0332892.s001.pdf (6.3MB, pdf)

Data Availability

All data are in the manuscript and/or supporting information files.

Funding Statement

This study was supported by the National Natural Science Foundation of China (Grant No. 82160077), the Self-Funded Scientific Research Project of Guangxi Health Department (Grant No. Z20211177) and the General Program of Natural Science Foundation of Guangxi Province of China (Grant No. 2017GXNSFAA198129).

References

  • 1.Vucicevic D, Honoris L, Raia F, Deng M. Current indications for transplantation: stratification of severe heart failure and shared decision-making. Ann Cardiothorac Surg. 2018;7(1):56–66. doi: 10.21037/acs.2017.12.01 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 2.Ambrosy AP, Fonarow GC, Butler J, Chioncel O, Greene SJ, Vaduganathan M, et al. The global health and economic burden of hospitalizations for heart failure: lessons learned from hospitalized heart failure registries. J Am Coll Cardiol. 2014;63(12):1123–33. doi: 10.1016/j.jacc.2013.11.053 [DOI] [PubMed] [Google Scholar]
  • 3.Kim W, Kim EJ. Heart Failure as a Risk Factor for Stroke. J Stroke. 2018;20(1):33–45. doi: 10.5853/jos.2017.02810 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 4.Ziaeian B, Fonarow GC. Epidemiology and aetiology of heart failure. Nat Rev Cardiol. 2016;13(6):368–78. doi: 10.1038/nrcardio.2016.25 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 5.Mattick JS. Non-coding RNAs: the architects of eukaryotic complexity. EMBO Rep. 2001;2(11):986–91. doi: 10.1093/embo-reports/kve230 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 6.Adams BD, Parsons C, Walker L, Zhang WC, Slack FJ. Targeting noncoding RNAs in disease. J Clin Invest. 2017;127(3):761–71. doi: 10.1172/JCI84424 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 7.Schmitz SU, Grote P, Herrmann BG. Mechanisms of long noncoding RNA function in development and disease. Cell Mol Life Sci. 2016;73(13):2491–509. doi: 10.1007/s00018-016-2174-5 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 8.Montes M, Lund AH. Emerging roles of lncRNAs in senescence. FEBS J. 2016;283(13):2414–26. doi: 10.1111/febs.13679 [DOI] [PubMed] [Google Scholar]
  • 9.Wang X, Li X-L, Qin L-J. The lncRNA XIST/miR-150-5p/c-Fos axis regulates sepsis-induced myocardial injury via TXNIP-modulated pyroptosis. Lab Invest. 2021;101(9):1118–29. doi: 10.1038/s41374-021-00607-4 [DOI] [PubMed] [Google Scholar]
  • 10.Yang F, Qin Y, Lv J, Wang Y, Che H, Chen X, et al. Silencing long non-coding RNA Kcnq1ot1 alleviates pyroptosis and fibrosis in diabetic cardiomyopathy. Cell Death Dis. 2018;9(10):1000. doi: 10.1038/s41419-018-1029-4 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 11.Korostowski L, Sedlak N, Engel N. The Kcnq1ot1 long non-coding RNA affects chromatin conformation and expression of Kcnq1, but does not regulate its imprinting in the developing heart. PLoS Genet. 2012;8(9):e1002956. doi: 10.1371/journal.pgen.1002956 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 12.Vausort M, Wagner DR, Devaux Y. Long noncoding RNAs in patients with acute myocardial infarction. Circ Res. 2014;115(7):668–77. doi: 10.1161/CIRCRESAHA.115.303836 [DOI] [PubMed] [Google Scholar]
  • 13.Dykes IM, Emanueli C. Transcriptional and Post-transcriptional Gene Regulation by Long Non-coding RNA. Genomics Proteomics Bioinformatics. 2017;15(3):177–86. doi: 10.1016/j.gpb.2016.12.005 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 14.Tay Y, Rinn J, Pandolfi PP. The multilayered complexity of ceRNA crosstalk and competition. Nature. 2014;505(7483):344–52. doi: 10.1038/nature12986 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 15.Yu X-H, Deng W-Y, Chen J-J, Xu X-D, Liu X-X, Chen L, et al. LncRNA kcnq1ot1 promotes lipid accumulation and accelerates atherosclerosis via functioning as a ceRNA through the miR-452-3p/HDAC3/ABCA1 axis. Cell Death Dis. 2020;11(12):1043. doi: 10.1038/s41419-020-03263-6 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 16.Lv X, Li J, Hu Y, Wang S, Yang C, Li C, et al. Overexpression of miR-27b-3p Targeting Wnt3a Regulates the Signaling Pathway of Wnt/β-Catenin and Attenuates Atrial Fibrosis in Rats with Atrial Fibrillation. Oxid Med Cell Longev. 2019;2019:5703764. doi: 10.1155/2019/5703764 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 17.Heallen T, Zhang M, Wang J, Bonilla-Claudio M, Klysik E, Johnson RL, et al. Hippo pathway inhibits Wnt signaling to restrain cardiomyocyte proliferation and heart size. Science. 2011;332(6028):458–61. doi: 10.1126/science.1199010 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 18.Lian X, Hsiao C, Wilson G, Zhu K, Hazeltine LB, Azarin SM, et al. Robust cardiomyocyte differentiation from human pluripotent stem cells via temporal modulation of canonical Wnt signaling. Proc Natl Acad Sci U S A. 2012;109(27):E1848-57. doi: 10.1073/pnas.1200250109 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 19.Liu J, Zheng X, Zhang C, Zhang C, Bu P. Lcz696 Alleviates Myocardial Fibrosis After Myocardial Infarction Through the sFRP-1/Wnt/β-Catenin Signaling Pathway. Front Pharmacol. 2021;12:724147. doi: 10.3389/fphar.2021.724147 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 20.Han S-P, Pan Y, Peng Y-Z, Gu X-Q, Chen R-H, Guo X-R. Folbp1 promotes embryonic myocardial cell proliferation and apoptosis through the WNT signal transduction pathway. Int J Mol Med. 2009;23(3):321–30. doi: 10.3892/ijmm_00000134 [DOI] [PubMed] [Google Scholar]
  • 21.Wei J, Peng MY, Wang SN, Lu HX. CXCL4:NLRP3-mediated pyroptosis product that regulates cardiac fibrosis. Int Immunopharmacol. 2024;133:112096. doi: 10.1016/j.intimp.2024.112096 [DOI] [PubMed] [Google Scholar]
  • 22.Zhang Q, Wang L, Wang S, Cheng H, Xu L, Pei G, et al. Signaling pathways and targeted therapy for myocardial infarction. Signal Transduct Target Ther. 2022;7(1):78. doi: 10.1038/s41392-022-00925-z [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 23.Xu J, Núñez G. The NLRP3 inflammasome: activation and regulation. Trends Biochem Sci. 2023;48(4):331–44. doi: 10.1016/j.tibs.2022.10.002 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 24.Nikolov A, Popovski N. Extracellular Matrix in Heart Disease: Focus on Circulating Collagen Type I and III Derived Peptides as Biomarkers of Myocardial Fibrosis and Their Potential in the Prognosis of Heart Failure: A Concise Review. Metabolites. 2022;12(4):297. doi: 10.3390/metabo12040297 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 25.Valiente-Alandi I, Potter SJ, Salvador AM, Schafer AE, Schips T, Carrillo-Salinas F, et al. Inhibiting Fibronectin Attenuates Fibrosis and Improves Cardiac Function in a Model of Heart Failure. Circulation. 2018;138(12):1236–52. doi: 10.1161/CIRCULATIONAHA.118.034609 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 26.Del Re DP, Amgalan D, Linkermann A, Liu Q, Kitsis RN. Fundamental Mechanisms of Regulated Cell Death and Implications for Heart Disease. Physiol Rev. 2019;99(4):1765–817. doi: 10.1152/physrev.00022.2018 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 27.Habimana O, Modupe Salami O, Peng J, Yi G-H. Therapeutic implications of targeting pyroptosis in Cardiac-related etiology of heart failure. Biochem Pharmacol. 2022;204:115235. doi: 10.1016/j.bcp.2022.115235 [DOI] [PubMed] [Google Scholar]
  • 28.Mas-Ponte D, Carlevaro-Fita J, Palumbo E, Hermoso Pulido T, Guigo R, Johnson R. LncATLAS database for subcellular localization of long noncoding RNAs. RNA. 2017;23(7):1080–7. doi: 10.1261/rna.060814.117 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 29.Long Q-Q, Wang H, Gao W, Fan Y, Li Y-F, Ma Y, et al. Long Noncoding RNA Kcna2 Antisense RNA Contributes to Ventricular Arrhythmias via Silencing Kcna2 in Rats With Congestive Heart Failure. J Am Heart Assoc. 2017;6(12):e005965. doi: 10.1161/JAHA.117.005965 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 30.Zhou G, Li C, Feng J, Zhang J, Fang Y. lncRNA UCA1 Is a Novel Regulator in Cardiomyocyte Hypertrophy through Targeting the miR-184/HOXA9 Axis. Cardiorenal Med. 2018;8(2):130–9. doi: 10.1159/000487204 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 31.Gao X, Ge J, Li W, Zhou W, Xu L. LncRNA KCNQ1OT1 promotes osteogenic differentiation to relieve osteolysis via Wnt/β-catenin activation. Cell Biosci. 2018;8:19. doi: 10.1186/s13578-018-0216-4 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 32.Zhang C, Gong Y, Li N, Liu X, Zhang Y, Ye F, et al. Long noncoding RNA Kcnq1ot1 promotes sC5b-9-induced podocyte pyroptosis by inhibiting miR-486a-3p and upregulating NLRP3. Am J Physiol Cell Physiol. 2021;320(3):C355–64. doi: 10.1152/ajpcell.00403.2020 [DOI] [PubMed] [Google Scholar]
  • 33.Li X, Dai Y, Yan S, Shi Y, Han B, Li J, et al. Down-regulation of lncRNA KCNQ1OT1 protects against myocardial ischemia/reperfusion injury following acute myocardial infarction. Biochem Biophys Res Commun. 2017;491(4):1026–33. doi: 10.1016/j.bbrc.2017.08.005 [DOI] [PubMed] [Google Scholar]

Decision Letter 0

Zhanzhan Li

21 Jul 2025

PONE-D-25-11818Inhibition of LncRNA Kcnq1ot1 suppresses hypoxia-induced pyroptosis of H9C2 cells by regulating miR-27b-3pPLOS ONE

Dear Dr. Li,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process.

==============================

ACADEMIC EDITOR: The Reviewer 1 suggested that external experimant should be made. Please note that.

Please submit your revised manuscript by Sep 04 2025 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org . When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.

Please include the following items when submitting your revised manuscript:

  • A rebuttal letter that responds to each point raised by the academic editor and reviewer(s). You should upload this letter as a separate file labeled 'Response to Reviewers'.

  • A marked-up copy of your manuscript that highlights changes made to the original version. You should upload this as a separate file labeled 'Revised Manuscript with Track Changes'.

  • An unmarked version of your revised paper without tracked changes. You should upload this as a separate file labeled 'Manuscript'.

If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter.

If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols . Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols .

We look forward to receiving your revised manuscript.

Kind regards,

Zhanzhan Li

Academic Editor

PLOS ONE

Journal Requirements:

When submitting your revision, we need you to address these additional requirements.

1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at

https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf   and

https://journals.plos.org/plosone/s/file?id=ba62/PLOSOne_formatting_sample_title_authors_affiliations.pdf

2. Thank you for stating the following financial disclosure:

 "This study was supported by the National Natural Science Foundation of China (Grant No. 82160077), the Self-Funded Scientific Research Project of Guangxi Health Department (Grant No. Z20211177) and the General Program of Natural Science Foundation of Guangxi Province of China (Grant No. 2017GXNSFAA198129)."      

Please state what role the funders took in the study.  If the funders had no role, please state: "The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript."

If this statement is not correct you must amend it as needed.

Please include this amended Role of Funder statement in your cover letter; we will change the online submission form on your behalf.

3. Please provide a complete Data Availability Statement in the submission form, ensuring you include all necessary access information or a reason for why you are unable to make your data freely accessible. If your research concerns only data provided within your submission, please write "All data are in the manuscript and/or supporting information files" as your Data Availability Statement.

4. PLOS ONE now requires that authors provide the original uncropped and unadjusted images underlying all blot or gel results reported in a submission’s figures or Supporting Information files. This policy and the journal’s other requirements for blot/gel reporting and figure preparation are described in detail at https://journals.plos.org/plosone/s/figures#loc-blot-and-gel-reporting-requirements and https://journals.plos.org/plosone/s/figures#loc-preparing-figures-from-image-files. When you submit your revised manuscript, please ensure that your figures adhere fully to these guidelines and provide the original underlying images for all blot or gel data reported in your submission. See the following link for instructions on providing the original image data: https://journals.plos.org/plosone/s/figures#loc-original-images-for-blots-and-gels .    

In your cover letter, please note whether your blot/gel image data are in Supporting Information or posted at a public data repository, provide the repository URL if relevant, and provide specific details as to which raw blot/gel images, if any, are not available. Email us at plosone@plos.org if you have any questions.

5. If the reviewer comments include a recommendation to cite specific previously published works, please review and evaluate these publications to determine whether they are relevant and should be cited. There is no requirement to cite these works unless the editor has indicated otherwise. 

[Note: HTML markup is below. Please do not edit.]

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Partly

Reviewer #2: Yes

**********

2. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: Yes

Reviewer #2: I Don't Know

**********

3. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: Yes

Reviewer #2: Yes

**********

4. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: Yes

Reviewer #2: Yes

**********

5. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: In the provided manuscript, authors showed that Kcnq1ot1 contains a binding site of miR-27b-3p using bioinformatic analysis. They also performed RNA pull downs assays to showcase the interaction between the LncRNA and miR-27b-3p. However, it would be strongly suggested to perform additional experiments like EMSAs to demonstrate the direct interaction between the two RNA molecules. It would also be suggested that both WT and mutated sequences be tested to demonstrate specific interactions between the two RNA molecules in question. These experiments deemed critical to support the conclusion in the study that inhibition of Kcnq1ot1 protected cardiomyocyte against hypoxia-induced injury possibly via sponging miR-27b-3p.

Reviewer #2: In line 110-113 : the authors mentioned two reverse primers for GAPD and U6 with no information about forward primer, How?!

Authors should define clearly the laboratory where this research done.

Authors should introduce results in the form of graphs and/or tables to be more obvious.

**********

6. PLOS authors have the option to publish the peer review history of their article (what does this mean? ). If published, this will include your full peer review and any attached files.

If you choose “no”, your identity will remain anonymous but your review may still be made public.

Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy .

Reviewer #1: No

Reviewer #2: Yes:  Sarah Samy Abdelghany

**********

[NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.]

While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/ . PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org . Please note that Supporting Information files do not need this step.

PLoS One. 2025 Sep 18;20(9):e0332892. doi: 10.1371/journal.pone.0332892.r002

Author response to Decision Letter 1


18 Aug 2025

Dear editor:

Thank you for your Email on 21-July-2025. We truly appreciate the constructive comments and suggestions from you and reviewers to our manuscript (Submission ID: PONE-D-25-11818). Based on the comments, we revised our manuscript and hope the modifications meet your expectations. The changes are in the revised manuscript. The details of our responses are as follows.

Editor Comments:

ACADEMIC EDITOR: The Reviewer 1 suggested that external experimant should be made. Please note that.

1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and https://journals.plos.org/plosone/s/file?id=ba62/PLOSOne_formatting_sample_title_authors_affiliations.pdf

Response: Thank you for your reminder. We have reviewed the formatting of the manuscript, and revised the manuscript as requested. The EMSA assays are valuable approaches. EMSA is mainly used to detect interactions between proteins and RNA. However the interaction between Kcnq1ot1 and miR-27b-3p is generally validated by Luciferase assays and RNA pull-down assays. Our data already demonstrate the specificity of this interaction.

2. Thank you for stating the following financial disclosure:

"This study was supported by the National Natural Science Foundation of China (Grant No. 82160077), the Self-Funded Scientific Research Project of Guangxi Health Department (Grant No. Z20211177) and the General Program of Natural Science Foundation of Guangxi Province of China (Grant No. 2017GXNSFAA198129)."

Please state what role the funders took in the study. If the funders had no role, please state: "The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript."

If this statement is not correct you must amend it as needed.

Please include this amended Role of Funder statement in your cover letter; we will change the online submission form on your behalf.

Response: Thank you for your comments. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.

3. Please provide a complete Data Availability Statement in the submission form, ensuring you include all necessary access information or a reason for why you are unable to make your data freely accessible. If your research concerns only data provided within your submission, please write "All data are in the manuscript and/or supporting information files" as your Data Availability Statement.

Response: Thank you for your comments. All data are in the manuscript and/or supporting information files.

4. PLOS ONE now requires that authors provide the original uncropped and unadjusted images underlying all blot or gel results reported in a submission’s figures or Supporting Information files. This policy and the journal’s other requirements for blot/gel reporting and figure preparation are described in detail at https://journals.plos.org/plosone/s/figures#loc-blot-and-gel-reporting-requirements and https://journals.plos.org/plosone/s/figures#loc-preparing-figures-from-image-files. When you submit your revised manuscript, please ensure that your figures adhere fully to these guidelines and provide the original underlying images for all blot or gel data reported in your submission. See the following link for instructions on providing the original image data: https://journals.plos.org/plosone/s/figures#loc-original-images-for-blots-and-gels.

In your cover letter, please note whether your blot/gel image data are in Supporting Information or posted at a public data repository, provide the repository URL if relevant, and provide specific details as to which raw blot/gel images, if any, are not available. Email us at plosone@plos.org if you have any questions.

Response: Thank you for your reminder. We have organized the original data for all the gel images and submitted it as "S1_raw_images". While, we have indicated in the cover letter that the uncropped original images are provided in the supporting information.

5. If the reviewer comments include a recommendation to cite specific previously published works, please review and evaluate these publications to determine whether they are relevant and should be cited. There is no requirement to cite these works unless the editor has indicated otherwise.

Response: Thank you for your reminder.

Reviewers' comments:

Reviewer #1:

In the provided manuscript, authors showed that Kcnq1ot1 contains a binding site of miR-27b-3p using bioinformatic analysis. They also performed RNA pull downs assays to showcase the interaction between the LncRNA and miR-27b-3p. However, it would be strongly suggested to perform additional experiments like EMSAs to demonstrate the direct interaction between the two RNA molecules. It would also be suggested that both WT and mutated sequences be tested to demonstrate specific interactions between the two RNA molecules in question. These experiments deemed critical to support the conclusion in the study that inhibition of Kcnq1ot1 protected cardiomyocyte against hypoxia-induced injury possibly via sponging miR-27b-3p.

Response: We thank you for highlighting the importance of rigorously validating the Kcnq1ot1-miR-27b-3p interaction. While EMSA assays are valuable approaches. EMSA is mainly used to detect interactions between proteins and RNA. However the interaction between Kcnq1ot1 and miR-27b-3p is generally validated by Luciferase assays and RNA pull-down assays. Our data already demonstrate the specificity of this interaction:

1.Luciferase assays (Figure 4F) showed that miR-27b-3p suppressed the activity of wild-type (WT) Kcnq1ot1 but not the mutant (MUT) construct, confirming sequence-dependent binding.

2.RNA pull-down (Figure 4E) revealed significant enrichment of miR-27b-3p by Kcnq1ot1 probes versus negative controls.

3.Functional rescue experiments (Figure 5) linked Kcnq1ot1 silencing to miR-27b-3p-mediated Wnt3a downregulation and cytoprotection.

We welcome suggestions to further improve the manuscript within our current technical scope. Thank you very much.

Fig.4. Effect of Kcnq1ot1 on miR-27b-3p. (a) Subcellular localization of Kcnq1ot1 predicted through the LncATLAS website. (b) The possible major expression of Kcnq1ot1 in the nucleus of cardiomyocytes via nuclear/cytosolic fractionation assay. (c) RNA level of miR-27b-3p by qRT-PCR in the si-NC group and si-Kcnq1ot1 group. (d) The binding sites between Kcnq1ot1 and miR-27b-3p utilizing starBase. (e) RNA pull down assay of the binding between Kcnq1ot1 and miR-27b-3p. (f) Luciferase reporter assay of the combination between Kcnq1ot1 and miR-27b-3p. n=3, ***p<0.001.

Fig.5. Effect of miR-27b-3p suppression together with Kcnq1ot1 inhibiting on hypoxia-injured H9C2 cells. (a) RNA level of miR-27b-3p by qRT-PCR in the inhibitor-NC group and miR-27b-3p inhibitor group. (b) mRNA level of Wnt3a, p-β-Catenin and β-Catenin by qRT-PCR. (c) Protein level of NLRP3 and Caspase-1 by WB. (d) mRNA level of NLRP3 and Caspase-1 by qRT-PCR. (e) Protein level of NLRP3 and Caspase-1 by WB. (f) Protein level of IL-1β and IL-18 by ELISA. (g) mRNA level of Fibronectin and Collagen III by qRT-PCR. (h) Protein level of Fibronectin and Collagen III by WB. (i) TUNEL staining. (j) IF for GSDMD-N in the Hypoxia+si-Kcnq1ot1+inhibitor-NC group and the Hypoxia+si-Kcnq1ot1+miR-27b-3p inhibitor group. n=3, *p<0.05, **p<0.01, ***p<0.001.

Reviewer #2: 

In line 110-113 : the authors mentioned two reverse primers for GAPD and U6 with no information about forward primer, How?!

Response: We sincerely appreciate your careful attention to the methodological details. The forward primers for GAPDH and U6 were accidentally omitted during manuscript preparation. The complete primer sets are:

GAPDH: forward: 5’-CCCTTAAGAGGGATGCTGCC-3’;

reverse: 5’-TACGGCCAAATCCGTTCACA-3’.

U6: forward: 5’-GGAGACACGCAAACGGAAG-3’;

reverse: 5’-AGTGCAGGGTCCGAGGTATT-3’.

These sequences have been added to the Materials and Methods section (Page 5, Line 112-115).

Authors should define clearly the laboratory where this research done.

Response: Thank you for your feedback. Most of experiments were conducted in research department of our hospital (Guilin Medical University Affiliated Hospital). Due to the limitation of experimental conditions, few experiments were conducted in the Guilin Medical University.

Authors should introduce results in the form of graphs and/or tables to be more obvious.

Response: Thank you for your recognition and valuable comments on our research. We have supplemented the Graphical Abstract Image in the manuscript, and the content is as follows:

Figure 6. Schematic of Kcng1ot1/miR-27b-3p/Wnt3a axis under hypoxia. Kcnq1ot1 sequesters miR-27b-3p to activate Wnt3a/β-Catenin/NLRP3-mediated pyroptosis, fibrosis and inflammation.

Attachment

Submitted filename: Response to reviewers.docx

pone.0332892.s003.docx (1.2MB, docx)

Decision Letter 1

Zhanzhan Li

8 Sep 2025

Inhibition of LncRNA Kcnq1ot1 suppresses hypoxia-induced pyroptosis of H9C2 cells by regulating miR-27b-3p

PONE-D-25-11818R1

Dear Dr. Li,

We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements.

Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication.

An invoice will be generated when your article is formally accepted. Please note, if your institution has a publishing partnership with PLOS and your article meets the relevant criteria, all or part of your publication costs will be covered. Please make sure your user information is up-to-date by logging into Editorial Manager at Editorial Manager®  and clicking the ‘Update My Information' link at the top of the page. For questions related to billing, please contact billing support .

If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org.

Kind regards,

Zhanzhan Li

Academic Editor

PLOS ONE

Additional Editor Comments (optional):

Reviewer #1:

Reviewer #2:

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation.

Reviewer #1: All comments have been addressed

Reviewer #2: All comments have been addressed

**********

2. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Yes

Reviewer #2: Yes

**********

3. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: I Don't Know

Reviewer #2: Yes

**********

4. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: Yes

Reviewer #2: Yes

**********

5. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: Yes

Reviewer #2: Yes

**********

6. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: (No Response)

Reviewer #2: (No Response)

**********

7. PLOS authors have the option to publish the peer review history of their article (what does this mean? ). If published, this will include your full peer review and any attached files.

If you choose “no”, your identity will remain anonymous but your review may still be made public.

Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy .

Reviewer #1: No

Reviewer #2: Yes:  Sarah Samy Abd ElGhany

**********

Acceptance letter

Zhanzhan Li

PONE-D-25-11818R1

PLOS ONE

Dear Dr. Li,

I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now being handed over to our production team.

At this stage, our production department will prepare your paper for publication. This includes ensuring the following:

* All references, tables, and figures are properly cited

* All relevant supporting information is included in the manuscript submission,

* There are no issues that prevent the paper from being properly typeset

You will receive further instructions from the production team, including instructions on how to review your proof when it is ready. Please keep in mind that we are working through a large volume of accepted articles, so please give us a few days to review your paper and let you know the next and final steps.

Lastly, if your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org.

You will receive an invoice from PLOS for your publication fee after your manuscript has reached the completed accept phase. If you receive an email requesting payment before acceptance or for any other service, this may be a phishing scheme. Learn how to identify phishing emails and protect your accounts at https://explore.plos.org/phishing.

If we can help with anything else, please email us at customercare@plos.org.

Thank you for submitting your work to PLOS ONE and supporting open access.

Kind regards,

PLOS ONE Editorial Office Staff

on behalf of

Dr. Zhanzhan Li

Academic Editor

PLOS ONE

Associated Data

    This section collects any data citations, data availability statements, or supplementary materials included in this article.

    Supplementary Materials

    S1 File. Raw images.

    (PDF)

    pone.0332892.s001.pdf (6.3MB, pdf)
    Attachment

    Submitted filename: Response to reviewers.docx

    pone.0332892.s003.docx (1.2MB, docx)

    Data Availability Statement

    All data are in the manuscript and/or supporting information files.


    Articles from PLOS One are provided here courtesy of PLOS

    RESOURCES