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. 2025 Sep 29;13(11):e01216-25. doi: 10.1128/spectrum.01216-25

D-histidine exhibited anti-biofilm activity against Aggregatibacter actinomycetemcomitans

Wenwen Shan 1,#, Fen Du 1,#, Haichuan Zhang 1, Jing Zhang 2, Xinyi Hu 3, Xinjiong Fan 1,3,, Wuli Li 1,
Editor: Kathryn T Elliott4
PMCID: PMC12584702  PMID: 41020610

ABSTRACT

Aggregatibacter actinomycetemcomitans is a key pathogen implicated in periodontitis. The bacterium in biofilms exhibits significant resistance to antimicrobial agents and host immune responses compared to its planktonic form, posing a major challenge for periodontal therapy. Recently, D-histidine has emerged as a promising anti-biofilm agent against Pseudomonas aeruginosa infections. However, its potential application in the oral field remains unexplored. This study investigated the anti-biofilm effect of D-histidine on A. actinomycetemcomitans and examined its influence on the expression of virulence factor genes to elucidate possible underlying mechanisms. Our results demonstrated that D-histidine inhibited biofilm formation and disrupted established biofilms in a concentration-dependent manner, without affecting bacterial growth. Furthermore, D-histidine downregulated the expression of virulence factors by inhibiting quorum sensing (QS)-related genes. Notably, combining D-histidine with antibiotics, such as amoxicillin, minocycline, and metronidazole, synergistically enhanced biofilm eradication and enabled the use of lower antibiotic dosages. These findings support the further evaluation of D-histidine as a potential anti-biofilm agent in the treatment of periodontitis.

IMPORTANCE

The increasing prevalence of antibiotic-resistant A. actinomycetemcomitans biofilms posed a significant challenge in periodontitis management. This study demonstrated that D-histidine effectively targeted A. actinomycetemcomitans biofilms by disrupting structural integrity and suppressing virulence gene expression, without exerting bactericidal effects that could promote resistance development. Notably, D-histidine showed potent synergy with minocycline, significantly enhancing biofilm eradication while potentially enabling reduced antibiotic dosages. These findings established D-histidine as a promising adjunctive therapeutic agent, addressing the urgent need for novel approaches to overcome biofilm-associated antibiotic tolerance in periodontal treatment.

KEYWORDS: quorum sensing, periodontitis, biofilm, D-histidine, adhesion

INTRODUCTION

Periodontitis is a complex chronic inflammatory disease driven by interactions between microbial biofilm and the host immune response. It affects up to 60% of dentate adults worldwide, posing a significant public health burden (1). Aggregatibacter actinomycetemcomitans is one of the key Gram-negative pathogens associated with periodontitis (2). It possesses multiple virulence factors that facilitate adherence to tooth surfaces (3, 4). Furthermore, systemic inflammation triggered by A. actinomycetemcomitans and its toxins can exacerbate periodontal tissue damage, ultimately contributing to the destruction of connective tissue and bone.

Mechanical debridement remains the primary treatment strategies for periodontitis, whereas adjunctive therapies, such as systemic or local antibiotics, are considered supplementary approaches (5). However, their effectiveness is limited by the intrinsic resilience of biofilms and the growing threat of antibiotic resistance. The biofilm, characterized by microbial communities embedded within an extracellular polymeric substance (EPS) matrix, provides structural stability, facilitates aggregation, and confers protection from antimicrobial agents and host immune responses (6). As biofilms mature, the EPS matrix expands, enhancing resistance to clearance and promoting bacterial dispersal, thereby perpetuating infection cycles (7, 8). Prolonged or excessive use of antibiotics further exacerbates the risk of resistance development (9). Hence, there is an urgent need for alternative strategies capable of disrupting biofilms without contributing to antibiotic resistance.

Quorum sensing (QS) is a key regulatory system that regulates bacterial communication through the accumulation of autoinducer molecules in a cell density-dependent manner (10, 11). In A. actinomycetemcomitans, quorum sensing governs virulence expression and biofilm development primarily via the downstream two-component system qseBC (1215). Targeting QS pathways, particularly two-component system qseBC, offers a promising strategy for inhibiting biofilm formation and reducing bacterial virulence without relying on conventional antibiotics (16).

Recent evidence suggests that certain amino acids can interfere with QS systems and modulate biofilm formation in various bacteria (1719). Amino acids exist as two stereoisomers: L-amino acids (L-AAs), which predominate in mammalian proteins, and D-amino acids (D-AAs), which are rare in mammals but abundant in bacteria, where they play critical roles in peptidoglycan structure and function (20). Recent studies have highlighted the anti-biofilm and anti-virulence properties of specific D-AAs, such as D-tyrosine, which can attenuate QS signaling, reduce autoinducer molecule levels, and synergize with antibiotics (21, 22). However, the efficacy of D-AAs is highly dependent on the amino acid type and its underlying mechanism of action. Many bacteria naturally synthesize and secrete D-AAs, which inhibit biofilm formation in a variety of pathogenic species (1719, 23, 24). For example, Bacillus subtilis produces D-leucine (D-Leu), D-methionine (D-Met), D-tyrosine (D-Tyr), and D-tryptophan (D-Trp) (23), and the inhibitory effects of D-Met/D-Trp on Campylobacter jejuni biofilms (17). Mechanistically, D-AAs can interfere with protein synthesis, hinder initial adhesion, and disrupt peptidoglycan integrity by competitively inhibiting peptidoglycan synthases, resulting in the incorporation of aberrant D-AAs into nascent cell wall material and subsequent loss of structural integrity (2527). Notably, D-histidine has demonstrated potent anti-biofilm activity and antibiotic potentiation against pathogens such as Pseudomonas aeruginosa and Porphyromonas gingivalis (28, 29). Despite these promising findings, the potential effects of D-histidine on A. actinomycetemcomitans have not been fully studied. This study investigated the effects of D-histidine on biofilm formation of A. actinomycetemcomitans, as well as its impact on the expression of adhesion factors and virulence-associated genes. We further explored the potential mechanisms underlying these effects, focusing on the QS system, and assessed the synergistic activity of D-histidine in combination with commonly used antibiotics, including amoxicillin, minocycline, and metronidazole. Our findings aim to demonstrate that D-histidine could be a novel anti-biofilm agent against A. actinomycetemcomitans, supporting its application for future clinical studies.

MATERIALS AND METHODS

Chemicals

D-histidine, amoxicillin, metronidazole, and minocycline were purchased from Sigma-Aldrich (St. Louis, MO, USA). Columbia blood agar plates, brain heart infusion broth, hemoglobin chloride, 0.02% vitamin K1 solution, and an oxygen indicator were purchased from Landbridge (Beijing, China). The DNA polymerase PrimeScrip RT Reagent Kit and TB Green Premix Ex Taq II and the RNeasy MinElute Cleanup Kit were purchased from SparkJade (Shandong, China). These chemicals and materials were used according to the manufacturer’s instructions. All other chemicals and reagents were of analytical grade and obtained from commercial sources unless otherwise stated.

Bacterial strains

A. actinomycetemcomitans ATCC 43717 (Guangdong Microorganism Culture Collection Center, Guangzhou, China) was used as the representative bacterial strain. After the microorganism was grown on a Columbia blood agar plate, a single colony was extracted using an inoculation loop and cultured in Brain Heart Infusion Broth (Hopebio, Qingdao, China) containing 5 mg/L hemin and 1 mg/L vitamin K3 for 72 h in an anaerobic environment (85% N₂, 10% H₂, 5% CO₂).

Bacterial growth

A. actinomycetemcomitans cultures were diluted to an optical density at 600 nm (OD600) of 0.1 in BHI medium according to a previously described protocol (30). The bacterial suspension was then added to 100 mM (final concentration) D-histidine and vortex-mixed for homogenization. Control groups received equivalent volumes of sterile phosphate-buffered saline (PBS). The turbidity of the culture was measured at 600 nm at 4 h intervals.

QS system, virulence factor, and adhesion genes analysis

A. actinomycetemcomitans cultures were diluted to an OD600 of 0.5 in BHI medium in a 12-well cell culture plate with 100 mM D-histidine. After incubation for 72 h at 37°C under static conditions, bacterial cells were harvested by centrifugation and immediately subjected to RNA extraction using the RNeasy MinElute Cleanup Kit. Real-time PCR (qPCR) was performed separately using the PrimeScript RT reagent kit. Primers for qPCR are listed in Table 1. RT-PCR was performed using the LightCycler 96 instrument with cycling conditions set at 95°C for 30 s, followed by 40 cycles of denaturation at 95°C for 5 s, and extension at 60°C for 30 s. The 16S rRNA gene served as the internal reference control, with primer sequences detailed in Table 1. A negative control containing RNase-free water instead of cDNA was included in each run. The 2−ΔΔCt method was used to calculate the relative expression of the target gene against the internal reference gene (31), where ΔCt is the difference between the Ct value of the target gene minus that of the internal reference gene, and ΔΔCt is the difference between the ΔCt values across different samples.

TABLE 1.

The qPCR primers

Gene Primers (5′→3′)
16S ribosomal RNA (16S rRNA) F: ACGCTGTAAACGGTGTCG
R: TTGCATCGAATTAAACCACAT
Poly(glycerophosphate) α-glucosyltransferase (pgA) F: GACGGTGATGCGGTATTGG
R: GACCGATGATGGAGCTGAA
Cytolethal distending toxin subunit B (cdtB) F: CAACAACACAATTCCAACCC
R: GGCGATACCTGTCCATTCTT
Leukotoxin A (ltxA) F: ATCAGCCCTTTGTCTTTCCTAG
R: TGACCAAGTAAACTATCGCCG
Cytolethal distending toxin subunit A (cdtA) F: GTCAACGAAGCTCCCAAGAACGCT
R: TGTACCTCTCCTTAGATCCATCCT
Aggregative adherence fimbriae regulator (aae) F: GGTTTTAGGCGGCACATTTA
R: TGCTTGACCAACCATAACCA
Escherichia coli membrane antigen A (emaA) F: CTGCAGCAACCGGGGATTAT
R: AATGGATTGGTTGCCTTTAG
Fimbrial low-molecular-weight protein (flp) F: TCAAAGCAATCGAAGCAATC
R: GCAATAGCGATCAAACCGTA
Outer membrane protein 100 kDa (omp100) F: ATCTTCAAGCCAAAACATC
R: AAGGCTGCCGACATTAT
Quorum-sensing Escherichia coli regulator B (qseB) F: GCAGTGGTGCTGGATTTAACCTTG
R: GCGTTACTGCTCACTTCGTTATCCC
Quorum-sensing Escherichia coli sensor kinase C (qseC) F: TAAGTGGAATAATTACAGCCTGCG
R: TTGTTGTGCGTCAAACACTTGGTTC
Regulator of curli production A (rcpA) F: GGGCATTAACTGGAGCCAC
R: ATCCACCTCCGAAACCGAAG

Biofilm formation

Following a previous study (32), a mid-exponential phase suspension of A. actinomycetemcomitans was diluted to OD600 = 0.5, and then 500 µL of the seed suspension was inoculated into 24-well cell culture plates containing round coverslips (14 mm diameter) at the bottom, followed by culture with 100 mM D-histidine. An equal volume of sterile ultrapure water was added to the control group. After 72 h of incubation at 37°C, planktonic cells were aspirated, and absorbance was measured at 600 nm to quantify planktonic bacteria. The plates were gently washed three times with phosphate-buffered saline (PBS). Biofilm formation was measured by crystal violet staining. For the crystal violet assay, each biofilm well was stained with a 0.1% crystal violet solution for 30 min. Subsequently, the microwells were rinsed three times with PBS and dried for 20 min, and the biofilm within them was dissolved in 95% ethanol; then the absorbance was measured at 590 nm to quantify biofilm formation and at 600 nm to quantify planktonic bacteria. The change in biofilm formation was calculated from the percentage change in absorbance (at 590 nm).

Dispersal assay

A suspension of A. actinomycetemcomitans in the mid-exponential phase was diluted to OD600 = 0.5 (32), and 1 mL was seeded into 24-well cell culture plates containing round coverslips (14 mm diameter) at the bottom. After 72 h of cultivation at 37°C, the planktonic cells were aspirated, and the plates were gently washed three times with (PBS). The cells were then treated with 100 mM D-histidine and incubated for 24 h. Residual biofilms were detected using the methods described above. Changes in biofilm formation and in planktonic bacteria were calculated from the percentage change in absorbance.

Biofilm staining and fluorescence microscopy

A. actinomycetemcomitans biofilms were cultured under static conditions (37°C, 72 h) on sterile glass coverslips in 24-well plates and cultured in BHI broth. After gentle rinsing with PBS to remove floating cells, the samples were fixed with 4% paraformaldehyde (15 min, RT), stained with 0.1% (wt/vol) aqueous crystal violet (20 min, RT), and washed rigorously with deionized water to remove unbound dye. Images were captured using a Zeiss Axio Observer 7 microscope (bright-field, exposure 200 ms). Z-stacks (1 µm step, 20 layers) from ≥9 random fields/coverslip were analyzed using threshold-based segmentation (Otsu method) in ImageJ. Biovolume (μm³/μm²) and surface coverage (%) were quantified.

Statistical analysis

Statistical analyses were performed using SPSS version 24.0. Data are expressed as the mean ± standard deviation. Dunnett’s test was used to compare the test and control groups, and values of P < 0.05 were considered statistically significant. All experiments were performed in triplicate and repeated three times.

RESULTS

Effect of D-histidine on the growth of A. actinomycetemcomitans

Growth curves (Fig. 1a) were plotted to determine the effect of D-histidine on the growth of A. actinomycetemcomitans. The growth curves indicated that the 100 mM concentration of D-histidine had no significant inhibitory or enhancing effect on the growth of A. actinomycetemcomitans. Subsequent studies used 100 mM and lower concentrations of D-histidine to investigate its potential effects on the QS system, virulence factors, adhesion genes, and biofilm formation of A. actinomycetemcomitans.

Fig 1.

D-histidine did not affect bacterial growth but dose-dependently reduced biofilm and increased planktonic cells. This shift coincided with downregulation of aae, omp100, emaA, and flp genes, implying potential changes in biofilm regulation.

(a) Effect of D-histidine on the growth of A. actinomycetemcomitans. (b) Effect of D-histidine on biofilm formation. (c) Effect of D-histidine on pre-formed biofilm. (d) Detection of planktonic bacterial populations in biofilm formation with A. actinomycetemcomitans. (e) Effect of D-histidine on the expression of adhesion genes of A. actinomycetemcomitans. D-histidine: 100 mM. The data are shown as means ± the standard deviation (SD), *P < 0.05, **P < 0.01, ***P < 0.001 (vs control).

Effect of D-histidine on biofilm formation and removal of formed biofilm of A. actinomycetemcomitans

We investigated the inhibitory and removal effects of D-histidine at concentrations of 0 mM, 1 mM, 10 mM, and 100 mM on the biofilms of A. actinomycetemcomitans using a crystal violet quantitative biofilm assay. Our results (Fig. 1b and c) showed that D-histidine could inhibit biofilm formation by A. actinomycetemcomitans and remove the formed biofilm in a concentration-dependent manner, with the best effects achieved at a D-histidine concentration of 100 mM, resulting in inhibition and removal rates of 49% and 38%, respectively (P < 0.001). Therefore, in the following experiments, we chose a concentration of 100 mM D-histidine in combination with different antibiotics to investigate its anti-biofilm effects.

Effect of D-histidine on the adhesion of A. actinomycetemcomitans

The initial adhesion of bacteria is crucial for biofilm formation, and the adhesion of A. actinomycetemcomitans is increasingly being studied. We first investigated the number of bacterioplankton involved in the biofilm formation of A. actinomycetemcomitans. The results (Fig. 1d) showed that the amount of bacterioplankton in the presence of A. actinomycetemcomitans was significantly greater than in the control group under the intervention of 100 mM D-histidine (P < 0.001). Furthermore, D-histidine did not affect the growth of A. actinomycetemcomitans, leading us to speculate that D-histidine might inhibit the initial adhesion of A. actinomycetemcomitans, thereby inhibiting its biofilm formation. Therefore, we speculated that D-histidine might inhibit the initial adhesion of A. actinomycetemcomitans and, consequently, the formation of its biofilm. Subsequently, we performed RT-qPCR analysis on the genes that regulate the adhesion of A. actinomycetemcomitans. The results (Fig. 1e) showed that 100 mM D-histidine suppressed the expression of the aae, omp100, emaA, and flp genes (P < 0.05), with the downregulation of approximately 65%, 55%, 84%, and 56%, respectively, thereby inhibiting the initial adhesion of A. actinomycetemcomitans.

Effect of D-histidine on virulence factors of A. actinomycetemcomitans

A. actinomycetemcomitans is capable of producing many virulence factors, such as cytolethal distending toxin (CDT) and leukotoxin (ITX), which evade the body’s defense system and play a significant role in the early stage of periodontitis pathogenesis. We performed real-time quantitative PCR analysis of the genes regulating these virulence factors, and the results (Fig. 2a) showed that 100 mM D-histidine significantly inhibited the expression of the cdtA, cdtB, pgA, itxA, and rcpA genes (P < 0.05), with the downregulation of approximately 97%, 84%, 89%, 92%, and 73%, respectively.

Fig 2.

D-histidine significantly suppresses cdtA, cdtB, pgA, ltxA, rcpA expression. It also downregulates qseB and qseC, suggesting it may modulate virulence and quorum-sensing regulatory pathways.

(a) Effect of D-histidine on the virulence gene expression of A. actinomycetemcomitans and (b) effect of D-histidine on the expression of QS genes in A. actinomycetemcomitans. D-histidine: 100 mM. The averages of the triplicate experiments represent each of the three experiments. The data are shown as means ± the standard deviation (SD), *P < 0.05, **P < 0.01, ***P < 0.001 (vs control).

Effect of D-histidine on the expression of QS genes in A. actinomycetemcomitans

We investigated the effect of D-histidine on the transcript levels of the QS-related genes qseB and qseC of A. actinomycetemcomitans using real-time quantitative PCR experiments. The qseBC two-component system is associated with the QS of A. actinomycetemcomitans and is required for its adaptation and response to various environmental stimuli. It is also involved in the regulation of A. actinomycetemcomitans colonization, biofilm formation, and virulence gene expression. Our results (Fig. 2b) showed that the gene expression of both qseB and qseC was downregulated in A. actinomycetemcomitans following treatment with 100 mM D-histidine. Specifically, the expression of qseC was reduced by approximately 31% (P < 0.01), whereas the expression of qseB was more significantly affected, showing a reduction of approximately 76% (P < 0.001).

Effect of D-histidine in combination with antibiotics on biofilm formation of A. actinomycetemcomitans

We evaluated the biofilm inhibitory effects of 100 mM D-histidine in combination with minocycline (MINO), metronidazole (MTZ), and amoxicillin (AMX) at both MIC and sub-MIC concentrations using a crystal violet quantitative biofilm assay (32). The MIC values for metronidazole and amoxicillin were 4 µg/mL, with a sub-MIC of 2 µg/mL, and for minocycline the MIC was 0.5 µg/mL, with a sub-MIC of 0.25 µg/mL, as determined by microdilution. Our results (Fig. 3) demonstrated that combinatorial treatment with D-histidine at MIC/sub-MIC concentrations significantly enhanced the biofilm-inhibitory efficacy of all three antibiotics relative to antibiotic monotherapy (P < 0.001). This synergistic enhancement was morphologically corroborated by microscopic analysis of biofilm architecture (Fig. 4).

Fig 3.

D-histidine markedly reduces biofilm biomass when combined with amoxicillin, minocycline, or metronidazole at both MIC and sub-MIC levels, showing strong synergistic antibiofilm activity compared with single treatments.

Effect of D-histidine in combination with antibiotics on pre-formed(mature/established) biofilm formation of A. actinomycetemcomitans. D-histidine:100 mM. (a) Amoxicillin, (b) minocycline, and (c) metronidazole. ***P < 0.001 (vs control).

Fig 4.

Control and D-histidine alone maintain dense biofilm, while sub-MIC and MIC doses of minocycline, metronidazole, or amoxicillin reduce density moderately. Combinations with D-histidine cause marked thinning and disruption of biofilm structure.

Microscopic analysis of the effect of 100 mM D-histidine in combination with antibiotics on biofilm formation of A. actinomycetemcomitans.

Effect of D-histidine in combination with antibiotics on pre-formed biofilm of A. actinomycetemcomitans

We evaluated the effect of 100 mM D-histidine in combination with minocycline, metronidazole, and amoxicillin on pre-formed biofilms of A. actinomycetemcomitans at both MIC and sub-MIC concentrations using a crystal violet quantitative biofilm assay. Our results (Fig. 5 and 6) indicated that none of the antibiotics alone were effective in dispersing the biofilms formed by A. actinomycetemcomitans. However, the combination of all three antibiotics significantly enhanced biofilm dispersal at both MIC and sub-MIC concentrations when used with D-histidine (P < 0.001).

Fig 5.

Amoxicillin, minocycline, and metronidazole reduce biofilm biomass moderately, while D-histidine alone also shows effect. Strongest reduction occurs when antibiotics combine with D-histidine at MIC or sub-MIC, as shown by bar graphs and staining.

Effect of 100 mM D-histidine in combination with antibiotics on pre-formed biofilm of A. actinomycetemcomitans. D-histidine: 100 mM. (a) Amoxicillin, (b) minocycline, and (c) metronidazole. ***P < 0.001 (vs control).

Fig 6.

Microscopy images show dense biofilms in control and antibiotic-only treatments. D-histidine alone reduces density slightly, but strongest disruption occurs with antibiotic and D-histidine combinations, leaving sparse coverage and fewer visible clusters.

Microscopic analysis of the effect of 100 mM D-histidine in combination with antibiotics on pre-formed biofilm of A. actinomycetemcomitans.

DISCUSSION

Recent studies have raised concerns over the high prevalence of antibiotic resistance within the oral microbiota. A. actinomycetemcomitans isolates from subgingival samples of German volunteers exhibited high rates of resistance genes against multiple antibiotic classes, including beta-lactams, macrolides, nitroimidazoles, and tetracyclines (33, 34). In addition to genetic resistance, biofilms formed by these bacteria confer significant protection. Biofilms are structured communities encased within a protective matrix of Extracellular Polymeric Substances (EPS), primarily composed of water, proteins, polysaccharides, extracellular DNA (eDNA), and lipids (6). During biofilm development, EPS initially forms a sticky matrix enabling microbial attachment and aggregation (8). Subsequently, continuous EPS synthesis expands the matrix three-dimensionally, embedding cells into a networked core. Ultimately, this EPS-encased core establishes a biological scaffold driving mature 3D microcolony formation (7). This resilient EPS structure provides essential functions including adhesion, aggregation, structural stability, and crucially, protection. Consequently, the dense EPS matrix physically restricts antibiotic diffusion and chemically binds or degrades antimicrobial agents, further enhancing resistance (35). Therefore, conventional antibiotics such as minocycline and metronidazole exhibit reduced efficacy against biofilm-associated A. actinomycetemcomitans. These findings underscore the urgent need for novel strategies that can disrupt biofilms and enhance antibiotic effectiveness.

D-amino acids (D-AAs) have emerged as promising candidates for combating biofilm-associated infections. While studies have shown that D-AA mixtures containing D-histidine can inhibit biofilm proliferation in some species, such as P. gingivalis (29), their effects appear to be species-specific. In our study, D-histidine did not impact the growth of A. actinomycetemcomitans, suggesting its antibiofilm activity is not due to bactericidal effects, but rather to interference with processes critical for biofilm formation.

D-Histidine targets genes involved in adhesion in A. actinomycetemcomitans biofilms

Our results demonstrated that D-histidine inhibits biofilm formation and promotes dispersal of established A. actinomycetemcomitans biofilms in a dose-dependent manner, with the highest effect observed at 100 mM. Importantly, D-histidine increased the number of planktonic bacteria without affecting overall bacterial growth, indicating that its primary mechanism involves disruption of initial bacterial adhesion. This is supported by the significant downregulation of genes encoding key adhesive structures, including Flp pili and non-pilus adhesins such as EmaA, Aae, and Omp100 (3, 3641), following D-histidine treatment. Specifically, Flp pili suppression abolishes bacterial aggregation, which is essential for microcolony formation and subsequent EPS matrix nucleation (42, 43). These adhesins are crucial for bacterial attachment to surfaces and host cells, and their inhibition likely accounts for the observed reduction in biofilm biomass.

D-Histidine reduces virulence factor expression via inhibition of quorum sensing system

Beyond adhesion, virulence factors play an essential role in biofilm formation and pathogenicity of A. actinomycetemcomitans. Cytolethal distending toxin (CDT) and leukotoxin A (LtxA) are two primary exotoxins in A. actinomycetemcomitans. CDT, consisting of three subunits-—CdtA, CdtB, and CdtC, is a genotoxin that disrupts the host cell cycle, causing cell death and tissue destruction (44, 45). LtxA is a major virulence factor that targets and kills leukocytes (3, 44). Crucially, biofilm maturation depends on extracellular polymeric substances (EPS). Unlike many bacteria, A. actinomycetemcomitans relies exclusively on poly-N-acetylglucosaminoglycan (PGA) as its dominant EPS. Loss of PGA function impairs colonization efficacy, reduces osteolytic activity, and suppresses virulence gene expression (46, 47). PGA forms a protective matrix embedding bacterial cells and virulence factors (e.g., CDT, LtxA), conferring structural stability and resistance absent in vulnerable planktonic cells. Our study found that D-histidine treatment significantly downregulated the expression of major virulence genes, including those encoding cytolethal distending toxin (CDT), leukotoxin A (LtxA), the rough colony protein RcpA, and poly-N-acetylglucosaminoglycan (PGA). The reduction in these factors is likely to decrease bacterial adhesion, biofilm stability, and pathogenicity, potentially rendering the bacteria more susceptible to antibiotics and host defenses.

The expression of virulence factors and adhesins is regulated, in part, by QS systems, including the qseBC two-component system. QseBC functions as a membrane protein responsible for sensing extracellular signals (48). QseBC functions as a membrane protein responsible for sensing extracellular signals (48). Upon ligand binding, it initiates a phosphorylation cascade that activates virulence gene expression (e.g., toxin secretion) and modulates bacterial behaviors (e.g., motility), ultimately enhancing pathogenicity (49). Weigel et al. also reported that qseBC can influence both biofilm formation and virulence production in A. actinomycetemcomitans (50). Additionally, Novak et al. (12) showed that qseBC is required to stimulate biofilm formation of A. actinomycetemcomitans in an animal model of periodontitis. Our data showed that D-histidine significantly downregulated the expression of qseB and qseC, suggesting that D-histidine disrupts mature biofilm and reduces the pathogenicity by suppressing the QS system pathway.

D-Histidine strengths antibiotic efficacy against A. actinomycetemcomitans biofilm

Importantly, we found that combining D-histidine with antibiotics enhanced the inhibitory and clearance effects on A. actinomycetemcomitans biofilms compared to antibiotics treatment alone. The combination of D-histidine with minocycline, in particular, exhibited a pronounced synergistic effect at both MIC and sub-MIC concentrations. This enhanced efficacy may be attributed to the complementary mechanisms of action: D-histidine disrupts bacterial adhesion and reduces the expression of virulence factors, while antibiotics target intracellular processes. Notably, this synergy exceeded that observed with D-histidine/amoxicillin, reflecting amoxicillin’s vulnerability to critical EPS-mediated resistance mechanisms. Specifically, the extracellular matrix impedes amoxicillin penetration while simultaneously subjecting the antibiotic to enzymatic degradation by β-lactamases, which constitute key EPS protein components that hydrolyze β-lactams, and facilitates non-specific binding (51). Minocycline’s lipophilicity (52) enables superior biofilm penetration and protein synthesis inhibition (53), whereas amoxicillin’s efficacy against planktonic bacteria. In contrast, amoxicillin, though potent against planktonic bacteria (54), is compromised in biofilms by β-lactamase degradation and EPS penetration barriers (55). As a result, the synergy between D-histidine and amoxicillin is relatively weak, reflecting the inherent limitations of amoxicillin in biofilm-associated infections.

Conclusion

In summary, our study demonstrates that D-histidine effectively inhibits biofilm formation by A. actinomycetemcomitans through suppression of adhesion, virulence factor production, and QS-related gene expression. When combined with antibiotics, D-histidine enhances antimicrobial efficacy against biofilms, suggesting a promising strategy to improve treatment outcomes and mitigate the emergence of antibiotic resistance in periodontal disease. Further research is warranted to elucidate the precise mechanisms of action and assess the clinical potential and safety of D-histidine as an adjunctive therapy in periodontitis management.

ACKNOWLEDGMENTS

This study was supported by the National Natural Science Foundation of China (82173725, 31400680), the Research Fund of Anhui Institute of Translational Medicine (no. 2022zhyx-C58) and Scientific Research Funding of Anhui Province Health Commission (AHWJ2023A20161), the Cultivation Program for Academic (Professional) Leaders of Young and Middle-aged Teachers Cultivation Initiatives in Colleges and Universities (no. DTR2024005).

Wenwen Shan: Writing – original draft, Methodology, Investigation, Data curation. Fen Du: Methodology, Investigation, Formal analysis. Haichuan Zhang: Methodology, Investigation. Jing Zhang: Methodology. Xinyi Hu: Investigation. Xinjiong Fan: Writing – review & editing, Supervision, Project administration. Wuli Li: Writing – review & editing, Supervision, Project administration. All authors read and approved the final manuscript.

Contributor Information

Xinjiong Fan, Email: fanxinjiong@126.com.

Wuli Li, Email: hotspot2008@163.com.

Kathryn T. Elliott, College of New Jersey, Ewing, New Jersey, USA

DATA AVAILABILITY

Data used in the present study are available from the corresponding author on reasonable request.

REFERENCES

  • 1. Villoria GEM, Fischer RG, Tinoco EMB, Meyle J, Loos BG. 2024. Periodontal disease: a systemic condition. Periodontol 2000 96:7–19. doi: 10.1111/prd.12616 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 2. Talapko J, Juzbašić M, Meštrović T, Matijević T, Mesarić D, Katalinić D, Erić S, Milostić-Srb A, Flam J, Škrlec I. 2024. Aggregatibacter actinomycetemcomitans: from the oral cavity to the heart valves. Microorganisms 12:1451. doi: 10.3390/microorganisms12071451 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 3. Belibasakis GN, Maula T, Bao K, Lindholm M, Bostanci N, Oscarsson J, Ihalin R, Johansson A. 2019. Virulence and pathogenicity properties of Aggregatibacter actinomycetemcomitans Pathogens 8:222. doi: 10.3390/pathogens8040222 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 4. Oscarsson J, Claesson R, Lindholm M, Höglund Åberg C, Johansson A. 2019. Tools of Aggregatibacter actinomycetemcomitans to evade the host response. J Clin Med 8:1079. doi: 10.3390/jcm8071079 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 5. Feres M, Retamal-Valdes B, Mestnik MJ, de Figueiredo LC, Faveri M, Duarte PM, Fritoli A, Faustino E, Souto MLS, de Franco Rodrigues M, Giudicissi M, Nogueira BCL, Saraiva L, Romito GA, Pannuti CM. 2018. The ideal time of systemic metronidazole and amoxicillin administration in the treatment of severe periodontitis: study protocol for a randomized controlled trial. Trials 19:201. doi: 10.1186/s13063-018-2540-8 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 6. Flemming H-C, Wingender J. 2010. The biofilm matrix. Nat Rev Microbiol 8:623–633. doi: 10.1038/nrmicro2415 [DOI] [PubMed] [Google Scholar]
  • 7. Karygianni L, Ren Z, Koo H, Thurnheer T. 2020. Biofilm matrixome: extracellular components in structured microbial communities. Trends Microbiol 28:668–681. doi: 10.1016/j.tim.2020.03.016B1 [DOI] [PubMed] [Google Scholar]
  • 8. Costerton JW, Stewart PS, Greenberg EP. 1999. Bacterial biofilms: a common cause of persistent infections. Science 284:1318–1322. doi: 10.1126/science.284.5418.1318 [DOI] [PubMed] [Google Scholar]
  • 9. Geng F, Liu J, Liu J, Lu Z, Pan Y. 2025. Recent progress in understanding the role of bacterial extracellular DNA: focus on dental biofilm. Crit Rev Microbiol 51:898–916. doi: 10.1080/1040841X.2024.2438117 [DOI] [PubMed] [Google Scholar]
  • 10. Hetta HF, Ramadan YN, Rashed ZI, Alharbi AA, Alsharef S, Alkindy TT, Alkhamali A, Albalawi AS, Battah B, Donadu MG. 2024. Quorum sensing inhibitors: an alternative strategy to win the battle against multidrug-resistant (MDR) bacteria. Molecules 29:3466. doi: 10.3390/molecules29153466 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 11. Postat J, Bousso P. 2019. Quorum sensing by monocyte-derived populations. Front Immunol 10:2140. doi: 10.3389/fimmu.2019.02140 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 12. Novak EA, Shao H, Daep CA, Demuth DR. 2010. Autoinducer-2 and QseC control biofilm formation and in vivo virulence of Aggregatibacter actinomycetemcomitans. Infect Immun 78:2919–2926. doi: 10.1128/IAI.01376-09 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 13. Fong KP, Chung WO, Lamont RJ, Demuth DR. 2001. Intra- and interspecies regulation of gene expression by Actinobacillus actinomycetemcomitans LuxS. Infect Immun 69:7625–7634. doi: 10.1128/IAI.69.12.7625-7634.2001 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 14. Fong KP, Gao L, Demuth DR. 2003. luxS and arcB control aerobic growth of Actinobacillus actinomycetemcomitans under iron limitation. Infect Immun 71:298–308. doi: 10.1128/IAI.71.1.298-308.2003 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 15. Shao H, James D, Lamont RJ, Demuth DR. 2007. Differential interaction of Aggregatibacter (Actinobacillus) actinomycetemcomitans LsrB and RbsB proteins with autoinducer 2. J Bacteriol 189:5559–5565. doi: 10.1128/JB.00387-07 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 16. Gonzales M, Kergaravat B, Jacquet P, Billot R, Grizard D, Chabrière É, Plener L, Daudé D. 2024. Disrupting quorum sensing as a strategy to inhibit bacterial virulence in human, animal, and plant pathogens. Pathog Dis 82:ftae009. doi: 10.1093/femspd/ftae009 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 17. Elgamoudi BA, Taha T, Korolik V. 2020. Inhibition of Campylobacter jejuni biofilm formation by D-amino acids. Antibiotics (Basel) 9:836. doi: 10.3390/antibiotics9110836 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 18. Rumbo C, Vallejo JA, Cabral MP, Martínez-Guitián M, Pérez A, Beceiro A, Bou G. 2016. Assessment of antivirulence activity of several d-amino acids against Acinetobacter baumannii and Pseudomonas aeruginosa. J Antimicrob Chemother 71:3473–3481. doi: 10.1093/jac/dkw342 [DOI] [PubMed] [Google Scholar]
  • 19. Hochbaum AI, Kolodkin-Gal I, Foulston L, Kolter R, Aizenberg J, Losick R. 2011. Inhibitory effects of D-amino acids on Staphylococcus aureus biofilm development. J Bacteriol 193:5616–5622. doi: 10.1128/JB.05534-11 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 20. Cava F, Lam H, de Pedro MA, Waldor MK. 2011. Emerging knowledge of regulatory roles of D-amino acids in bacteria. Cell Mol Life Sci 68:817–831. doi: 10.1007/s00018-010-0571-8 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 21. Jia R, Yang D, Xu D, Gu T. 2017. Mitigation of a nitrate reducing Pseudomonas aeruginosa biofilm and anaerobic biocorrosion using ciprofloxacin enhanced by D-tyrosine. Sci Rep 7:6946. doi: 10.1038/s41598-017-07312-7 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 22. Xu H, Liu Y. 2011. D-amino acid mitigated membrane biofouling and promoted biofilm detachment. J Memb Sci 376:266–274. doi: 10.1016/j.memsci.2011.04.030 [DOI] [Google Scholar]
  • 23. Kolodkin-Gal I, Romero D, Cao S, Clardy J, Kolter R, Losick R. 2010. D-amino acids trigger biofilm disassembly. Science 328:627–629. doi: 10.1126/science.1188628 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 24. Cava F, de Pedro MA, Lam H, Davis BM, Waldor MK. 2011. Distinct pathways for modification of the bacterial cell wall by non-canonical D-amino acids. EMBO J 30:3442–3453. doi: 10.1038/emboj.2011.246 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 25. Feng W, Chittò M, Xie W, Ren Q, Liu F, Kang X, Zhao D, Li G, Moriarty TF, Wang X. 2024. Poly(D-amino acid) nanoparticles target staphylococcal growth and biofilm disassembly by interfering with peptidoglycan synthesis. ACS Nano 18:8017–8028. doi: 10.1021/acsnano.3c10983 [DOI] [PubMed] [Google Scholar]
  • 26. Wang S-Y, Sun X-F, Gao W-J, Wang Y-F, Jiang B-B, Afzal MZ, Song C, Wang S-G. 2018. Mitigation of membrane biofouling by D-amino acids: effect of bacterial cell-wall property and d-amino acid type. Colloids Surf B Biointerfaces 164:20–26. doi: 10.1016/j.colsurfb.2017.12.055 [DOI] [PubMed] [Google Scholar]
  • 27. Leiman SA, May JM, Lebar MD, Kahne D, Kolter R, Losick R. 2013. D-amino acids indirectly inhibit biofilm formation in Bacillus subtilis by interfering with protein synthesis. J Bacteriol 195:5391–5395. doi: 10.1128/JB.00975-13 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 28. Zhang H, Mi Z, Wang J, Zhang J. 2024. D-histidine combated biofilm formation and enhanced the effect of amikacin against Pseudomonas aeruginosa in vitro. Arch Microbiol 206:148. doi: 10.1007/s00203-024-03918-4 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 29. Zhang Z, Li B, Cai Q, Qiao S, Wang D, Wang H, Zhang H, Yang Y, Meng W. 2021. Synergistic effects of D-arginine, D-methionine and D-histidine against Porphyromonas gingivalis biofilms. Biofouling 37:222–234. doi: 10.1080/08927014.2021.1893309 [DOI] [PubMed] [Google Scholar]
  • 30. Wattimena A, Ganesan SM, Kumar PS, Dabdoub SM, Walters JD. 2021. An in vitro model for studies of attenuation of antibiotic-inhibited growth of Aggregatibacter actinomycetemcomitans Y4 by polyamines. Mol Oral Microbiol 36:308–315. doi: 10.1111/omi.12353 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 31. Livak KJ, Schmittgen TD. 2001. Analysis of relative gene expression data using real-time quantitative PCR and the 2−ΔΔCT method. Methods 25:402–408. doi: 10.1006/meth.2001.1262 [DOI] [PubMed] [Google Scholar]
  • 32. Wang J, Ju T, Guo L, Shan W, Wu Q, Zhang H, Zhang J. 2024. Quorum-quenching enzyme Est816 assisted antibiotics against periodontitis induced by Aggregatibacter actinomycetemcomitans in rats. Front Cell Infect Microbiol 14:1368684. doi: 10.3389/fcimb.2024.1368684 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 33. Ardila C-M, Bedoya-García J-A. 2020. Antimicrobial resistance of Aggregatibacter actinomycetemcomitans, Porphyromonas gingivalis and Tannerella forsythia in periodontitis patients. J Glob Antimicrob Resist 22:215–218. doi: 10.1016/j.jgar.2020.02.024 [DOI] [PubMed] [Google Scholar]
  • 34. Gager Y, Koppe J, Vogl I, Gabert J, Jentsch H. 2023. Antibiotic resistance genes in the subgingival microbiome and implications for periodontitis therapy. J Periodontol 94:1295–1301. doi: 10.1002/JPER.22-0696 [DOI] [PubMed] [Google Scholar]
  • 35. Liu HY, Prentice EL, Webber MA. 2024. Mechanisms of antimicrobial resistance in biofilms. NPJ Antimicrob Resist 2:27. doi: 10.1038/s44259-024-00046-3 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 36. Schreiner HC, Sinatra K, Kaplan JB, Furgang D, Kachlany SC, Planet PJ, Perez BA, Figurski DH, Fine DH. 2003. Tight-adherence genes of Actinobacillus actinomycetemcomitans are required for virulence in a rat model. Proc Natl Acad Sci USA 100:7295–7300. doi: 10.1073/pnas.1237223100 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 37. Kajiya M, Komatsuzawa H, Papantonakis A, Seki M, Makihira S, Ouhara K, Kusumoto Y, Murakami S, Taubman MA, Kawai T. 2011. Aggregatibacter actinomycetemcomitans Omp29 is associated with bacterial entry to gingival epithelial cells by F-Actin rearrangement. PLoS One 6:e18287. doi: 10.1371/journal.pone.0018287 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 38. Rose JE, Meyer DH, Fives-Taylor PM. 2003. Aae, an autotransporter involved in adhesion of Actinobacillus actinomycetemcomitans to epithelial cells. Infect Immun 71:2384–2393. doi: 10.1128/IAI.71.5.2384-2393.2003 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 39. Tang G, Ruiz T, Barrantes-Reynolds R, Mintz KP. 2007. Molecular heterogeneity of EmaA, an oligomeric autotransporter adhesin of Aggregatibacter (Actinobacillus) actinomycetemcomitans. Microbiology (Reading) 153:2447–2457. doi: 10.1099/mic.0.2007/005892-0 [DOI] [PubMed] [Google Scholar]
  • 40. Asakawa R, Komatsuzawa H, Kawai T, Yamada S, Goncalves RB, Izumi S, Fujiwara T, Nakano Y, Suzuki N, Uchida Y, Ouhara K, Shiba H, Taubman MA, Kurihara H, Sugai M. 2003. Outer membrane protein 100, a versatile virulence factor of Actinobacillus actinomycetemcomitans. Mol Microbiol 50:1125–1139. doi: 10.1046/j.1365-2958.2003.03748.x [DOI] [PubMed] [Google Scholar]
  • 41. Ruiz T, Lenox C, Radermacher M, Mintz KP. 2006. Novel surface structures are associated with the adhesion of Actinobacillus actinomycetemcomitans to collagen. Infect Immun 74:6163–6170. doi: 10.1128/IAI.00857-06 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 42. Kachlany SC, Planet PJ, Desalle R, Fine DH, Figurski DH, Kaplan JB. 2001. Flp-1, the first representative of a new pilin gene subfamily, is required for non-specific adherence of Actinobacillus actinomycetemcomitans. Mol Microbiol 40:542–554. doi: 10.1046/j.1365-2958.2001.02422.x [DOI] [PubMed] [Google Scholar]
  • 43. Tomich M, Planet PJ, Figurski DH. 2007. The tad locus: postcards from the widespread colonization island. Nat Rev Microbiol 5:363–375. doi: 10.1038/nrmicro1636 [DOI] [PubMed] [Google Scholar]
  • 44. Fine DH, Patil AG, Velusamy SK. 2019. Aggregatibacter actinomycetemcomitans (Aa) under the radar: myths and misunderstandings of Aa and its role in aggressive periodontitis. Front Immunol 10:728. doi: 10.3389/fimmu.2019.00728 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 45. Johansson A, Sandström G, Claesson R, Hänström L, Kalfas S. 2000. Anaerobic neutrophil‐dependent killing of Actinobacillus actinomycetemcomitans in relation to the bacterial leukotoxicity. Eur J Oral Sci 108:136–146. doi: 10.1034/j.1600-0722.2000.00790.x [DOI] [PubMed] [Google Scholar]
  • 46. Shanmugam M, El Abbar F, Ramasubbu N. 2015. Transcriptome profiling of wild-type and pga-knockout mutant strains reveal the role of exopolysaccharide in Aggregatibacter actinomycetemcomitans. PLoS One 10:e0134285. doi: 10.1371/journal.pone.0134285 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 47. Shanmugam M, Gopal P, El Abbar F, Schreiner HC, Kaplan JB, Fine DH, Ramasubbu N. 2015. Role of exopolysaccharide in Aggregatibacter actinomycetemcomitans-induced bone resorption in a rat model for periodontal disease. PLoS One 10:e0117487. doi: 10.1371/journal.pone.0117487 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 48. Zhu Y, Dou Q, Du L, Wang Y. 2023. QseB/QseC: a two-component system globally regulating bacterial behaviors. Trends Microbiol 31:749–762. doi: 10.1016/j.tim.2023.02.001 [DOI] [PubMed] [Google Scholar]
  • 49. Maslennikov I, Klammt C, Hwang E, Kefala G, Okamura M, Esquivies L, Mörs K, Glaubitz C, Kwiatkowski W, Jeon YH, Choe S. 2010. Membrane domain structures of three classes of histidine kinase receptors by cell-free expression and rapid NMR analysis. Proc Natl Acad Sci USA 107:10902–10907. doi: 10.1073/pnas.1001656107 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 50. Weigel WA, Demuth DR. 2016. QseBC, a two-component bacterial adrenergic receptor and global regulator of virulence in Enterobacteriaceae and Pasteurellaceae. Mol Oral Microbiol 31:379–397. doi: 10.1111/omi.12138 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 51. Høiby N, Bjarnsholt T, Givskov M, Molin S, Ciofu O. 2010. Antibiotic resistance of bacterial biofilms. Int J Antimicrob Agents 35:322–332. doi: 10.1016/j.ijantimicag.2009.12.011 [DOI] [PubMed] [Google Scholar]
  • 52. Xie Y, Yang X, Zhou M, Liu Y, Zeng R. 2025. From adhesion to destruction: minocycline’s dual action against Cutibacterium acnes biofilms. Braz J Microbiol 56:1797–1803. doi: 10.1007/s42770-025-01687-w [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 53. Inubushi J, Liang K. 2020. Update on minocycline in vitro activity against odontogenic bacteria. J Infect Chemother 26:1334–1337. doi: 10.1016/j.jiac.2020.08.015 [DOI] [PubMed] [Google Scholar]
  • 54. Sgolastra F, Petrucci A, Gatto R, Monaco A. 2012. Effectiveness of systemic amoxicillin/metronidazole as an adjunctive therapy to full‐mouth scaling and root planing in the treatment of aggressive periodontitis: a systematic review and meta‐analysis. J Periodontol 83:731–743. doi: 10.1902/jop.2011.110432 [DOI] [PubMed] [Google Scholar]
  • 55. Wu W-S, Cheng W-C, Cheng T-JR, Wong C-H. 2018. Affinity-based screen for inhibitors of bacterial transglycosylase. J Am Chem Soc 140:2752–2755. doi: 10.1021/jacs.7b13205 [DOI] [PubMed] [Google Scholar]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Data Availability Statement

Data used in the present study are available from the corresponding author on reasonable request.


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