Abstract
Studies show that anxiety is one of the most common symptoms of mercury poisoning. The mechanism of mercury toxicity is not known in detail. This study aimed to broaden our understanding of mercury-induced anxiety and suggest potential protective agents. A list of genes associated with anxiety was extracted from the overlap between GeneCards, DisGeNET, and Diseases to decipher protein-protein interaction (PPI) and core sub-network. The comparative toxicogenomic database (CTD) helped to identify core mercury targets in anxiety disorders. Detailed interactions and relevant functions were obtained through GeneMANIA. Network pharmacology and molecular docking approaches identified potential protective agents-mercury target interactions. Among the eight proteins in the anxiety-related core sub-network (IL1B, IL6, TNF, IFNG, STAT3, TP53, EP300, and ESR1), the top-ranked proteins IL1B, IL6, TNF, and IFNG were revealed as core mercury targets with key interactions in disrupting the inflammatory responses and interfering with cellular processes. GeneMANIA highlighted the functions of CASP1, TNFAIP3, and SQSTM1 as first neighbors of the core mercury targets. Quercetin, selenium, curcumin, and glutathione were specified as factors that target the most mercury-responsive genes. Molecular docking revealed strong binding affinities between protective agents (quercetin and curcumin) and core target proteins. This study presented a network biology approach in toxicology and pharmacology to further understand the mechanism of mercury toxicity and its therapeutic solution for anxiety disorders.
Key Words: Anxiety disorders, Mercury, Toxicogenomics, Network toxicology, Network pharmacology, Molecular docking
Introduction
Anxiety is a psychiatric disorder that affects approximately 15% of the world’s population (1). This response relates to anticipated future threats (2). The common symptoms of anxiety are sadness and excessive worrying, which negatively disrupt daily activities and quality of life (1). Physical changes, such as blood pressure, are associated with. Heavy metals, as well-known environmental pollutants, are one of the most critical risk factors for human health (3, 4, 5). According to the Agency for Toxic Substances and Disease Registry (ATSDR), mercury (Hg) ranks as the third heaviest metal in terms of toxicity frequency and the potential risk for human exposure (6). Mercury is released from natural phenomena such as volcanic eruptions, industrial activities, exposed water, and soil. Moreover, marine food and dental amalgam fillings can also cause mercury toxicity (7). Many studies have shown that mercury is a nonessential metal for human biological and physiological functions (8), even though the metals Iron (Fe), Magnesium (Mg), and Copper (Cu) are essential nutrients (2). Mercury exposure disturbs the digestive, renal, and nervous system functions (9). Depending on the level of exposure, it may cross the blood-brain barrier (BBB), reach the central nervous system (CNS), and accumulate in tissues, culminating in oxidative stress and changes in brain structure (10, 11). These damages are divided into two groups: Acute exposure-related and chronic-related damages. Acute exposure-related damages cause general physiological modifications; however, chronic exposure-related damages result in anxiety and memory problems (11).
A complex relationship exists between human exposure to heavy metals and nervous system disorders (12). Studies indicate that network toxicology can help understand the toxicological mechanisms of harmful chemical and biological agents from a network perspective and decipher the gene-environment interactions. The toxicological network can be considered as the crucial basis for further toxicological studies (13, 14). Therefore, the present study aimed to explore the underlying mechanisms and core targets in mercury-induced anxiety disorder through a network toxicology approach. In addition, by combining network toxicology with network pharmacology, this study reveals potential protective agents against mercury-gene interactions in anxiety disorders. Finally, molecular docking analysis was used to evaluate the binding stability of protective agents against core mercury targets. Using a network biology approach provided a systematic understanding of the relevant mechanisms.
Materials & Methods
Collecting data related to anxiety disorder and mercury-responsive genes
Anxiety disorder candidate genes were collected from three public databases, including GeneCards (15), DisGeNET (16), and DISEASES (17). Then, a list of common genes between the three databases was obtained using a Venn diagram (https://www. bioinformatics.org/gvenn) and considered as genes associated with anxiety disorder for further analysis. Mercury-gene interactions were extracted from the comparative toxicogenomic database (CTD) (18) and considered mercury-responsive genes. Finally, common genes between the list of anxiety candidate genes and mercury-responsive genes were detected and introduced as mercury target genes in anxiety disorder induction to discern new insights into its detailed toxicity mechanisms.
Functional analysis of mercury-responsive genes in anxiety disorder
Gene ontology (GO) analysis, as a bioinformatics approach, provides a framework of concepts to unify gene representation and describe the function of gene products across organisms (19). The Kyoto Encyclopedia of Genes and Genomes (KEGG) is a bioinformatics resource for systematically investigating high-level links between gene functions (20). DAVID (21) was used as a functional annotation tool to identify and interpret gene ontology biological processes (BPs) and KEGG pathways of the mercury-responsive genes in anxiety disorder (p-value <.05 and enrichment gene count >2).
Constructing the protein interaction network of genes involved in anxiety disorders
The protein-protein interaction information of anxiety disorder-related genes was extracted from the STRING database with a confidence score of ≥ 0.9 (22). The resulting data was imported into the Cytoscape software to build a network and analyze its scaling and topological properties (23).
Discovering the core sub-network in the anxiety network and identifying mercury targets
To find the critical protein sub-network in the whole PPI network, the CytoNca and CytoHubba plugins were used in the Cytoscape software (24, 25). First, to build the initial sub-network by CytoNca, six network topological parameters, including Degree, Betweenness, Closeness, Eigenvector, LAC, and network, were considered. Scores above the median value of each parameter were used to filter the initial critical gene list. This screening method was re-run on the initial results, and the final sub-network of the CytoNca plugin was introduced. The second method to find the critical sub-network in the PPI network was to use the CytoHubba plugin. In this way, the MCC parameter was chosen to analyze the top 17 genes (based on the result of method 1) in the PPI network. Finally, common genes between the results of the two methods were selected to determine the critical PPI sub-network (3, 26). Subsequently, shared genes between the critical sub-network associated with anxiety disorder and the list of mercury targets were identified.
Functional analysis of core sub-network and mercury targets
The extracted sub-network was functionally analyzed using the DAVID resource tool, including gene ontology and KEGG pathway analysis with a p-value <.05. The GeneMania web server (27) was used to predict more details about the interactions and find related genes to mercury targets in the anxiety core sub-network. The gene list of the critical sub-network is given to this server as a query, and the server can add new genes to the sub-network and evaluate protein interactions in terms of physical, functional, co-expression, genetic, shared protein domains, and co-localization.
Identifying protective factors against mercury-induced anxiety
First, potential protective factors for mercury toxicity were collected using a review of existing resources. Then, information related to protective factors-gene/protein interactions was obtained using the CTD database. CTD is known as a robust and public database that aims to enhance understanding of the mechanisms of environmental effects on human health (18). Protective agent-mercury target interactions were screened based on CTD results to identify potential protective agents against mercury-induced anxiety. In the case of protein-based protective factors, the first relevant interactions were extracted from the STRING (v.12.0) database (22). This study used the option “add more nodes to the current network’ and expanded the network. Then, the common proteins between the list of mercury targets and interacting proteins with protein protective factors were extracted.
Construction of protective factor-protein interaction network
A protective factors-mercury targets interaction network was constructed for anxiety disorder using Cytoscape. Factors with more than ten targets were considered to build a protective factor-protein interaction network. Subsequently, protective agent-mercury target interactions in the core sub-network and GeneMANIA network were screened to find potential candidate genes for therapeutic targeting and to investigate treatment effects. In addition, using network pharmacology analysis, high-ranking protective factors were selected for functional annotation and enrichment.
Molecular docking technology
This study employed the molecular docking technique to confirm the interaction between drug candidates and core targets. The 3D molecular structures of compounds were obtained from the PubChem chemical compound library (https://pubchem.ncbi.nlm.nih.gov) (28). The obtained structures were optimized and minimized via the Gaussian09 software package at B3LYP/6-311+G* level of theory (29). The 3D structures of target proteins were obtained from the RCSB database (https://www.rcsb.org/) (30). The rigid (receptor): flexible (ligand) docking was performed by the AutoDock 4.2 molecular docking program, which utilizes an empirical free energy function and the Lamarckian Genetic Algorithm (LGA). The Gastieger charges were computed and added to the macromolecule input files, and AutoGrid was applied to calculate grids (31).
Results
Mercury targets screening and functional annotation in anxiety disorder
At first, 622 common genes for anxiety disorders were identified between the GeneCards, DisGeNET, and Diseases databases, as depicted in Fig.1.A. The overlap of genes between the three databases was presented in a Venn diagram. In addition, 885 mercury-target interactions were retrieved from the CTD database. Fig.1.B. illustrates the overlap of 79 genes between the anxiety-related genes and CTD results. The 79 mercury-responsive genes in anxiety were subjected to the DAVID resource for annotation and functional enrichment. Tables 1 and 2 show the top functional terms. Gene ontology analysis revealed that BP terms of the 79 genes were enriched in inflammatory response and positive regulation of gene expression as the top GO terms (Table 1). KEGG pathway enrichment analysis showed lipid and atherosclerosis, Chagas disease, and pathways in cancer as the top KEGG terms (Table 2).
Fig.1.
A. Data related to anxiety disorder. B. mercury-responsive genes in anxiety.
Table 1.
Gene Ontology (BP, biological process) analysis of mercury-responsive genes in anxiety disorder. The top 10 terms are displayed.
| GOTERM_BP_DIRECT | Genes | P -Value |
|---|---|---|
| GO:0006954; inflammatory response | CRP, TGFB1, CXCL8, IL13, TNFAIP3, ADM, FOS, PARK7, TNF, IL6, IL1B, GPER1, CCL3, NLRP3, NLRP1, TAC1, CCR2, NFE2L2 | 7.90E-13 |
| GO:0010628; positive regulation of gene expression | CRP, APP, TGFB1, CXCL8, NTRK3, IL13, PARK7, IGF1, NGF, FGF2, TNF, SLC6A4, IL6, IFNG, IL1B, GPER1, CCL3, NFE2L2 | 1.30E-11 |
| GO:0050729; positive regulation of inflammatory response | APP, TGFB1, IFNG, IL1B, CASP1, CCL3, NLRP3, NLRP1, TNF, IL2, CCR2 | 2.20E-11 |
| GO:0032731; positive regulation of interleukin-1 beta production | APP, IL6, IFNG, CASP1, CCL3, NLRP3, NLRP1, JAK2, TNF | 2.20E-10 |
| GO:0033138; positive regulation of peptidyl-serine phosphorylation | APP, IL6, BDNF, NTRK3, BCL2, PARK7, NGF, PTGS2, TNF | 3.60E-10 |
| GO:0071222; cellular response to lipopolysaccharide | IL10, IL6, CXCL8, IL1B, GSTP1, CASP1, NLRP3, TNFAIP3, JAK2, PTGS2, TNF, MMP9 | 4.00E-10 |
| GO:0009410; response to xenobiotic stimulus | IL10, TGFB1, ABCB1, MMP2, FOS, COMT, PTGS2, LIPA, TNF, SLC6A4, SOD1, BCL2, DRD3 | 4.50E-10 |
| GO:0045429; positive regulation of nitric oxide biosynthetic process | APP, IFNG, IL1B, APOE, OPRM1, JAK2, PTGS2, TNF | 6.10E-10 |
| GO:0010629; negative regulation of gene expression | APP, TGFB1, CXCL8, PARK7, IGF1, FGF2, TNF, IFNG, GPER1, CCL3, APOE, TARDBP, HRAS | 4.30E-09 |
| GO:0043410; positive regulation of MAPK cascade | APP, IL6, TGFB1, GPER1, IGF1, JAK2, HRAS, TNF, DRD3, FGF2, SOD1 | 5.20E-09 |
Table 2.
Pathway analysis of mercury-responsive genes in anxiety disorder. The top 10 terms are displayed.
| KEGG_PATHWAY | Genes | P -Value |
|---|---|---|
| hsa05417: Lipid and atherosclerosis | CXCL8, FOS, TNF, MMP9, IL6, IL1B, CASP1, CYP1A1, CCL3, BCL2, FAS, NLRP3, CALM3, JAK2, HRAS, NFE2L2, MAPK3 | 6.90E-12 |
| hsa05142: Chagas disease | IL10, IL6, TGFB1, CXCL8, IFNG, IL1B, CCL3, FAS, FOS, TNF, IL2, MAPK3 | 3.70E-10 |
| hsa05200: Pathways in cancer | TGFB1, GSTM1, CXCL8, GSTP1, MMP2, IL13, FOS, IGF1, PTGS2, FGF2, MMP9, IL2, ESR2, IL6, IFNG, BCL2, FAS, CALM3, JAK2, HRAS, NFE2L2, MAPK3 | 3.70E-10 |
| hsa05133: Pertussis | IL10, IL6, CXCL8, IL1B, CASP1, NLRP3, SERPING1, CALM3, FOS, TNF, MAPK3 | 4.00E-10 |
| hsa05140: Leishmaniasis | IL10, TGFB1, IFNG, IL1B, FOS, JAK2, PTGS2, TNF, HLA-DQA1, MAPK3, HLA-DQB1 | 4.50E-10 |
| hsa05321: Inflammatory bowel disease | IL10, IL6, TGFB1, IFNG, IL1B, IL13, TNF, IL2, HLA-DQA1, HLA-DQB1 | 1.80E-09 |
| hsa04657: IL-17 signaling pathway | IL6, CXCL8, IFNG, IL1B, IL13, TNFAIP3, FOS, PTGS2, TNF, MMP9, MAPK3 | 2.90E-09 |
| hsa04625: C-type lectin receptor signaling pathway | IL10, IL6, IL1B, CASP1, NLRP3, CALM3, PTGS2, HRAS, TNF, IL2, MAPK3 | 7.70E-09 |
| hsa05418: Fluid shear stress and atherosclerosis | GSTM1, IFNG, IL1B, GSTP1, MMP2, BCL2, CALM3, FOS, TNF, SQSTM1, MMP9, NFE2L2 | 1.10E-08 |
| hsa05323: Rheumatoid arthritis | IL6, TGFB1, CXCL8, IFNG, IL1B, CCL3, FOS, TNF, HLA-DQA1, HLA-DQB1 | 4.80E-08 |
PPI network structure and core targets
To further decipher the mechanisms of mercury-induced anxiety disorder, the present study built a PPI network for anxiety-related genes and specified mercury-target interactions. Protein interactions were obtained by mapping 622 genes to the STRING database with a confidence score ≥0.9. The interactions were imported into the Cytoscape software for network construction, visualization, and analysis. The resulting network consisted of 454 nodes (protein) and 1188 edges (interaction) and revealed a scale-free pattern with a network degree distribution R-squared value of 0.878 (Fig. 2. A). Figure 2. B revealed that 71 of the 79 mercury targets have protein interactions. ABCB1, ALDH5A1, CADM2, CPZ, ITIH1, ITIH3, LIPA, and SERPING1 did not show any interactions and were absent in the network. Two core sub-networks, consisting of 17 proteins in the total protein network, were screened using CytoNca and CytoHubba (Fig. 3. A-D). The Venn diagram tool was used to find overlaps between the two core sub-networks (Fig. 4). IL1B, IL6, TNF, IFNG, STAT3, TP53, EP300, and ESR1 were identified as the intersection of the two key sub-networks and presented a final core sub-network associated with anxiety disorder. These eight genes were ranked based on their importance in the sub-network, and the first four were identified as mercury targets, including IL1B, IL6, TNF, and IFNG (Fig. 4). Table 1 shows that these four genes are simultaneously enriched in the positive regulation of gene expression GO term. Furthermore, Table 2 indicates the simultaneous presence of these four genes in the KEGG pathways of Chagas disease, Inflammatory bowel disease, IL-17 signaling pathway, and Rheumatoid arthritis.
Fig. 2.
A. Anxiety protein-protein interaction network; nodes: 454, edges: 1188, with a confidence score ≥ 0.9. B. Network toxicology: Mercury-anxiety interactions in purple edges.
Fig. 3.
A. Screening 1 of the anxiety-PPI network (yellow nodes) through CytoNca. B. Screening 2 of the Screening 1 results through CytoNca (yellow nodes). C. Critical Sub-network constructed after two-step screening via CytoNca, 17 nodes and 57 edges. D. Critical sub-network of top 17 nodes by CytoHubba, 17 nodes and 80 edges.
Fig. 4.
Shared genes between two key sub-networks and final critical protein sub-network, 8 proteins and 16 interactions. Four top-ranked nodes (IL1B, IL6, TNF, and IFNG) are mercury-responsive targets.
Functional analysis of key sub-network and core mercury targets
The functional analysis of the key sub-network is displayed in Tables 3 and 4, indicating targeting cellular processes. The GeneMANIA network (Fig. 5) shows 24 genes (4 query genes and 20 related genes) with 507 links based on physical interactions (77.64%), co-expression (8.01%), predicted (5.37%), co-localization (3.63%), genetic interactions (2.87%), pathway (1.88%), and shared protein domains (0.60%). The GeneMANIA analysis-based functions of core mercury targets (IL1B, IL6, TNF, and IFNG) highlight regulation of inflammatory response, regulation of cytokine-mediated signaling pathway, regulation of response to cytokine stimulus, response to interleukin-1, cellular response to interleukin-1, response to lipopolysaccharide, and cellular response to molecule of bacterial origin as the significant terms. GeneMANIA analysis revealed CASP1 (interacts with IL1B, IL6, TNF, and IFNG), TNFAIP3 (interacts with IL1B, IL6, TNF), and SQSTM1 (interacts with IL1B and TNF) among 20 GeneMANIA-predicted proteins as first neighbors of core mercury targets, belonging to the list of 79 mercury-responsive genes in anxiety. The GeneMANIA network contains seven mercury targets: IL1B, IL6, TNF, IFNG, CASP1, TNFAIP3, and SQSTM1.
Table 3.
Gene ontology analysis of the key sub-network.
| Term | Genes | P -Value |
|---|---|---|
| positive regulation of transcription by RNA polymerase II | IL6, IFNG, IL1B, STAT3, EP300, ESR1, TNF, TP53 | 4.41E-09 |
| positive regulation of DNA-binding transcription factor activity | IL6, IL1B, EP300, ESR1, TNF | 1.43E-08 |
| positive regulation of DNA-templated transcription | IL6, IL1B, STAT3, EP300, ESR1, TNF, TP53 | 1.69E-08 |
| positive regulation of interleukin-6 production | IL6, IFNG, IL1B, STAT3, TNF | 2.58E-08 |
| positive regulation of gene expression | IL6, IFNG, IL1B, STAT3, TNF, TP53 | 2.35E-07 |
| positive regulation of calcidiol 1-monooxygenase activity | IFNG, IL1B, TNF | 3.34E-07 |
| positive regulation of nitric oxide biosynthetic process | IFNG, IL1B, ESR1, TNF | 4.33E-07 |
| regulation of insulin secretion | IL6, IFNG, IL1B, TNF | 4.33E-07 |
| cell surface receptor signaling pathway via JAK-STAT | IL6, IFNG, STAT3, TNF | 8.78E-07 |
| positive regulation of miRNA transcription | IL6, STAT3, TNF, TP53 | 1.08E-06 |
Table 4.
KEGG pathway analysis of the key sub-network.
| Term | Genes | P -Value |
|---|---|---|
| Inflammatory bowel disease | IL6, IFNG, IL1B, STAT3, TNF | 9.65E-08 |
| African trypanosomiasis | IL6, IFNG, IL1B, TNF | 2.32E-06 |
| Hepatitis B | IL6, STAT3, EP300, TNF, TP53 | 3.69E-06 |
| Graft-versus-host disease | IL6, IFNG, IL1B, TNF | 4.22E-06 |
| Influenza A | IL6, IFNG, IL1B, EP300, TNF | 4.68E-06 |
| Tuberculosis | IL6, IFNG, IL1B, EP300, TNF | 5.73E-06 |
| Malaria | IL6, IFNG, IL1B, TNF | 5.82E-06 |
| Lipid and atherosclerosis | IL6, IL1B, STAT3, TNF, TP53 | 1.13E-05 |
| Human cytomegalovirus infection | IL6, IL1B, STAT3, TNF, TP53 | 1.36E-05 |
| Pathways in cancer | IL6, IFNG, STAT3, EP300, ESR1, TP53 | 1.46E-05 |
Fig. 5.
Key mercury-responsive targets in the core sub-network (IL1B, IL6, TNF, and IFNG) and the GeneMANIA predicted related proteins (20 proteins) and their functional analysis.
Protective agent-target interactions against mercury-induced anxiety
A protective agent-mercury target network was constructed, which included 408 links between 23 agents and 71 targets. As shown in Fig. 6. A, quercetin, selenium, curcumin, and glutathione target the most mercury-responsive genes (58, 45, 42, and 38 nodes, respectively). Fig. 6. B presents agent-mercury target interactions in the core sub-network. Quercetin, curcumin, selenium, succimer, salicylic acid, glutathione, D-penicillamine, and ellagic acid interact with all four-core targets of mercury. It has been previously mentioned that four-core targets (IL1B, IL6, TNF, and IFNG) for mercury were identified in the key sub-network, and three related proteins (CASP1, TNFAIP3, and SQSTM) were also revealed in the GeneMANIA network. Quercetin is the only one that targets all seven mercury-responsive genes (IL1B, IL6, TNF, IFNG, CASP1, SQSTM1, and TNFAIP3) in the GeneMANIA network (Table 5). Curcumin (IL1B, IL6, TNF, IFNG, CASP1, SQSTM1), selenium (IL1B, IL6, TNF, IFNG, CASP1, SQSTM1), and succimer (IL1B, IL6, TNF, CASP1, SQSTM1, and TNFAIP3) target six mercury-responsive genes. Salicylic acid (IL1B, IL6, TNF, IFNG, CASP1), Glutathione (IL1B, IL6, TNF, IFNG, SQSTM1), and D-penicillamine (IL1B, IL6, TNF, IFNG, CASP1) had five targets among the seven genes. Flunarizine, Prolactin, Dihydrolipoic acid, DPPD, Dimercaprol, Unithiol, Metallothionein, Nicardipine, Diltiazem did not have any target among the seven genes.
Fig. 6.
A. Protective agent-target interactions against mercury-induced toxicity in anxiety. quercetin, selenium, curcumin, and glutathione target the maximum number of mercury-responsive genes (58, 45, 42, and 38 nodes, respectively). B. Protective agent-core target interactions.
Table 5.
Protective agents that target mercury-responsive genes in the core sub-network and the GeneMANIA network.
| Protective agent | Summary | Targets |
|---|---|---|
| Quercetin | It is a plant flavonoid with antioxidant and anti-inflammatory effects | IL1B, IL6, TNF, IFNG, CASP1, SQSTM1, TNFAIP3 |
| Curcumin | Curcumin is a polyphenol that acts as an antioxidant, antibacterial, and anti-inflammatory agent | IL1B, IL6, TNF, IFNG, CASP1, SQSTM1 |
| Selenium | An essential mineral with antioxidant properties | IL1B, IL6, TNF, IFNG, CASP1, SQSTM1 |
| Succimer | Heavy metal chelator | IL1B, IL6, TNF, CASP1, SQSTM1, and TNFAIP3 |
| Salicylic acid | A phenolic compound with anxiolytic and hypnotic effects, functions as an antioxidant | IL1B, IL6, TNF, IFNG, CASP1 |
| Glutathione | A tripeptide with antioxidant properties | IL1B, IL6, TNF, IFNG, SQSTM1 |
| D-penicillamine | A chelating agent | IL1B, IL6, TNF, IFNG, CASP1 |
| Ellagic acid | A polyphenol with antioxidant and anti-proliferative properties | IL1B, IL6, TNF, IFNG |
| Verapamil | A non-dihydropyridine calcium channel blocker with antihypertensive, anti-inflammatory, and antioxidative properties | IL1B, IL6, TNF, CASP1 |
| alpha-lipoic acid | It is an antioxidant made by the body, with neuroprotective effects | IL1B, IL6, TNF |
| Ebselen | cytoprotective, anti-inflammatory and antioxidant effects | IL6, TNF, IFNG |
| Naringenin | A flavonoid with antioxidant, anti-inflammatory, nephroprotective effects | IL1B, IL6, TNF |
| Nifedipine | antioxidant and anti-apoptotic properties | IL1B, TNF, TNFAIP3 |
| Nimodipine | neuroprotective properties | TNF |
Molecular docking of screened protective agents and potential targets
Using molecular docking, as a valuable computational technique, helped to identify potential protective candidates by predicting the binding affinities between drug candidates and key targets.
Based on the protective agent-mercury target network, the positions of drug molecules (curcumin and quercetin) in the binding sites of proteins (IL1B, IFNG, IL6, CASP1, SQSTM1, TNF, and TNFAIP3) were calculated using molecular docking methodology. The free binding energy (ΔGbinding) and involved amino acids in the binding sites of targets are presented in Table 6. As indicated in Table 6, curcumin interacts with six proteins, including IL1B, IFNG, IL6, CASP1, SQSTM1, and TNF, with binding energies of -8.45, -8.38, -5.59, -6.41, -6.78, and -7.34 kcal/mol, respectively. Moreover, quercetin was found to bind with seven proteins: IL1B, IFNG, IL6, CASP1, SQSTM1, TNF, and TNFAIP3, with binding energies of -7.95, -7.24, -5.72, -6.84, -6.24, -5.92, and -5.72 kcal/mol, respectively. Fig. 7, Fig. S1, and Fig. S2 show molecular docking complexes.
Table 6.
Binding affinities of ligand-receptor complexes.
| Receptor | H-bonding | Binding energy (kcal/mol) |
|---|---|---|
| IL1B | 6 H-bond: LysA103 (2), MetA148 (C-H-bond), ProB206 (C-H-bond), ThrB207 (2) | -8.45 |
| IFNG | 7 H-bond: AsnA16 (2), LysA12, GlyA18, HisB111, PheC112 (C-H-bond), GlnB115 (C-H-bond), | -8.38 |
| IL6 | 4 H-bond: GlnB75, LeuC108 (C-H-bond), SerC109 (C-H-bond), AsnC110 | -5.59 |
| CASP1 | 6 H-bond: HisA237, GlyA238, GlyA287, AspA288 (C-H bond), ArgB341 (2) | -6.41 |
| SQSTM1 | 5 H-bond: SerA119 (C-H-bond), AsnA120, ProA134, ThrA138, SerA152 | -6.78 |
| TNF | 5 H-bond: SerB60, TyrB119 (C-H-bond), GlyA121, TyrA151, TyrB151, | -7.34 |
| ||
| IL1B | 7 H-bond: LysA103, MetA148 (2), AsnB204, THRB207 (2), AsnB239 | -7.95 |
| IFNG | 5 H-bond: SerC80, AspC107, HisC111 (2), ArgC106 (C-H-bond) | -7.24 |
| IL6 | 4 H-bond: GlnB75, LeuC108, AsnC110, AlaC160 | -5.72 |
| CASP1 | 6 H-bond: ArgA179, SerA236 (2), HisA237, CysA285, ArgB341 | -6.84 |
| SQSTM1 | 7 H-bond: ProA113, CysA131(C-H-bond), ValA136 (2), SerA152, LysA157, CysA151 (C-H-bond) | -6.24 |
| TNF | 2 H-bond: GlyA121, GlyB121 | -5.92 |
| TNFAIP3 | 4 H-bond: ThrA13, CysA35 (C-H-bond), ThrA36 (2) | -6.15 |
Fig. 7.
The complex of IL1B with A) Curcumin, and B) Quercetin. The H-bond interaction is depicted with a green dotted line, and the hydrophobic interaction is depicted with a semicircle.
Discussion
According to the literature, the interaction between heavy metals, as well-known environmental pollutants, and mental disorders has attracted widespread attention. Mercury is recognized as one of the most hazardous heavy metals, and exposure to this substance can adversely impact multiple systems within the human body. Studies show the occurrence of neurological and behavioral disorders often after exposure to various mercury compounds, posing a serious challenge to the public health of society (32). Mercury penetrates the central nervous system through the BBB and causes neurological disorders such as anxiety (33, 34, 35). Researchers have found that anxiety is linked to an inflammatory response, which is caused by neuroinflammation, increasing the levels of inflammatory cytokines. Inflammatory pathways are activated by oxidative stress and lead to neuronal damage. Inflammatory cytokines extend central inflammatory responses through increasing BBB permeability and expedite the damage to the CNS by oxidative stress (36). An urgent need exists to constantly control and monitor mercury as a significant public health challenge and provide new insights into the neurobehavioral mechanisms (32). The present study used a network toxicology approach to investigate the effects of environmental mercury exposure on the molecular mechanisms involved in the induction of anxiety disorder. A critical sub-network with eight proteins (IL1B, IL6, TNF, IFNG, STAT3, TP53, EP300, and ESR1) was screened to identify core mercury-responsive targets. IL1B (interleukin-1β), IL6 (interleukin-6), TNF (tumor necrosis factor), and IFNG (interferon-gamma) were detected as core targets of mercury. These results were considered for further detail and functional analysis. Mercury exposure can be linked to the inflammatory reactions (37). Targeting inflammatory pathways and restraining them is an impressive strategy for reducing anxiety and depressive-like behaviors (38). TNF-α and IL1B are major inflammation cytokines in brain tissue, which go up in anxiety and depression (39). The first essential gene is IL1B, which is present in the nervous system during neurogenesis and synapse formation (40). Furthermore, it plays a role in neurological processes and expresses immune responses, implicated in developing mental disorders such as autism, schizophrenia, and anxiety (41). Afsordeh et al. found that exposure to mercury results in abnormal neurogenic inflammatory responses, such as up-regulation of IL1B (42). IL1B is increased in mental disorders through chronic activation of microglia, the brain’s endogenous immune cells. It causes neurotoxicity by releasing reactive oxygen species (ROS) and increases depressive symptoms (43, 44). IL6 is an inflammatory cytokine produced by many cells, such as stromal cells, hematopoietic cells, epithelial cells, and muscle cells, and it is involved in various biological processes. It is extended after contact with mercury (45, 46). M. Foley et al. showed an association between IL6 and depression; the activity/bioavailability of IL6 contributes to providing further insight into depression. Its biological effects are exerted through three signaling pathways: Classical signaling, trans-signaling, and trans-presentation, having some interactions between IL6, interleukin 6 receptor (IL6R), and glycoprotein 130. These interactions help to find and measure the trans-signaling strength and reflection of IL6 activity/bioavailability, relating to inflammatory proteins, including CRP, causing depression (47). A study by Gardner et al. concluded that even low mercury levels could dysregulate cytokine signaling pathways (48). A lack of corticotropin-releasing hormone receptor 2 (CRHR2), a receptor that is mainly expressed in the brain, causes anxiety-like behavior and increases neuroinflammation and apoptosis (49). IFNG is a pro-inflammatory cytokine that is increased in response to neurodevelopmental disorders (50). All this research shows mercury affects the regulation of cytokine signaling pathways, the amount of secretion, and the response. The toxicogenomic data mining technique was also used to identify potential protective agents to overcome mercury poisoning and target mercury-gene interactions in anxiety. Molecular docking technique revealed strong binding affinities for curcumin and quercetin with the screened targets. This study’s results need to be further verified in future studies.
In Conclusion
The present study integrated network toxicology and network pharmacology methodologies to explore top-ranked mercury targets and relevant protective agents in mercury-induced anxiety disorder. The anxiety-related core sub-network was identified, and core mercury targets (IL1B, IL6, TNF, and IFNG), along with relevant mechanisms, were introduced. The obtained results indicate that high-ranking proteins in the main sub-network act as mercury-responsive targets, emphasizing the importance of network toxicology in in-depth investigations of toxicological mechanisms. Quercetin, selenium, curcumin, and glutathione were suggested as potential therapeutic agents. Overall, this study’s detailed and key information can help understand mercury-induced anxiety and select an efficient and effective protection strategy. However, experimental studies are recommended based on these results.
Acknowledgment
This study is related to project NO.43010177 from the Student Research Committee, Shahid Beheshti University of Medical Sciences, Tehran, Iran. The authors gratefully acknowledge the support of the Student Research Committee and Research and Technology Chancellor at Shahid Beheshti University of Medical Sciences (Tehran, Iran) for their financial support of this study.
The authors thank the Student Research Committee, Shahid Beheshti University of Medical Sciences, Tehran, Iran, for their support (No. 43010177).
Authors’ Contribution
Fatemeh Bagheri: Investigation, Writing-original draft, Visualization, Software, Methodology, Writing- Review & Editing. Masoumeh Farahani: Investigation, Data curation, Formal analysis, Software, Methodology, Writing- Review & Editing. Mostafa Rezaei-Tavirani: Formal analysis, Conceptualization, Supervision, Project administration, Methodology, Writing- Review & Editing. Fatemeh Fateminasab: Investigation, Software, Methodology, Writing- Review & Editing.
Conflicts of Interest
The authors have no conflicts of interest to declare.
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