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. 1991 Sep;60(3):577–587. doi: 10.1016/S0006-3495(91)82087-2

Open channel noise. VI. Analysis of amplitude histograms to determine rapid kinetic parameters.

S H Heinemann 1, F J Sigworth 1
PMCID: PMC1260101  PMID: 1718467

Abstract

Recently we reported that rapid fluctuations of ion currents flowing through open gramicidin A channels exceed the expected level of pure transport noise at low ion concentrations (Heinemann, S. H. and F. J. Sigworth. 1990. Biophys. J. 57:499-514). Based on comparisons with kinetic ion transport models we concluded that this excess noise is likely caused by current interruptions lasting approximately 1 microsecond. Here we introduce a method using the higher-order cumulants of the amplitude distribution to estimate the kinetics of channel closing events far below the actual time resolution of the recording system. Using this method on data recorded with 10 kHz bandwidth, estimates for gap time constants on the order of 1 microsecond were obtained, similar to the earlier predictions.

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Selected References

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  1. Andersen O. S. Gramicidin channels. Annu Rev Physiol. 1984;46:531–548. doi: 10.1146/annurev.ph.46.030184.002531. [DOI] [PubMed] [Google Scholar]
  2. Colquhoun D., Ogden D. C. Activation of ion channels in the frog end-plate by high concentrations of acetylcholine. J Physiol. 1988 Jan;395:131–159. doi: 10.1113/jphysiol.1988.sp016912. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Fesce R., Segal J. R., Hurlbut W. P. Fluctuation analysis of nonideal shot noise. Application to the neuromuscular junction. J Gen Physiol. 1986 Jul;88(1):25–57. doi: 10.1085/jgp.88.1.25. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Finkelstein A., Andersen O. S. The gramicidin A channel: a review of its permeability characteristics with special reference to the single-file aspect of transport. J Membr Biol. 1981 Apr 30;59(3):155–171. doi: 10.1007/BF01875422. [DOI] [PubMed] [Google Scholar]
  5. Frehland E. Current noise around steady states in discrete transport systems. Biophys Chem. 1978 Jul;8(3):255–265. doi: 10.1016/0301-4622(78)87007-0. [DOI] [PubMed] [Google Scholar]
  6. Heinemann S. H., Sigworth F. J. Estimation of Na+ dwell time in the gramicidin A channel. Na+ ions as blockers of H+ currents. Biochim Biophys Acta. 1989 Dec 11;987(1):8–14. doi: 10.1016/0005-2736(89)90448-3. [DOI] [PubMed] [Google Scholar]
  7. Heinemann S. H., Sigworth F. J. Open channel noise. IV. Estimation of rapid kinetics of formamide block in gramicidin A channels. Biophys J. 1988 Oct;54(4):757–764. doi: 10.1016/S0006-3495(88)83013-3. [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. Heinemann S. H., Sigworth F. J. Open channel noise. V. Fluctuating barriers to ion entry in gramicidin A channels. Biophys J. 1990 Mar;57(3):499–514. doi: 10.1016/S0006-3495(90)82566-2. [DOI] [PMC free article] [PubMed] [Google Scholar]
  9. Läuger P. Transport noise in membranes. Current and voltage fluctuations at equilibrium. Biochim Biophys Acta. 1978 Feb 21;507(2):337–349. doi: 10.1016/0005-2736(78)90427-3. [DOI] [PubMed] [Google Scholar]
  10. Pietrobon D., Prod'hom B., Hess P. Interactions of protons with single open L-type calcium channels. pH dependence of proton-induced current fluctuations with Cs+, K+, and Na+ as permeant ions. J Gen Physiol. 1989 Jul;94(1):1–21. doi: 10.1085/jgp.94.1.1. [DOI] [PMC free article] [PubMed] [Google Scholar]
  11. Sandblom J., Eisenman G., Hägglund J. Multioccupancy models for single filing ionic channels: theoretical behavior of a four-site channel with three barriers separating the sites. J Membr Biol. 1983;71(1-2):61–78. doi: 10.1007/BF01870675. [DOI] [PubMed] [Google Scholar]
  12. Sigworth F. J. Open channel noise. I. Noise in acetylcholine receptor currents suggests conformational fluctuations. Biophys J. 1985 May;47(5):709–720. doi: 10.1016/S0006-3495(85)83968-0. [DOI] [PMC free article] [PubMed] [Google Scholar]
  13. Sigworth F. J., Urry D. W., Prasad K. U. Open channel noise. III. High-resolution recordings show rapid current fluctuations in gramicidin A and four chemical analogues. Biophys J. 1987 Dec;52(6):1055–1064. doi: 10.1016/S0006-3495(87)83299-X. [DOI] [PMC free article] [PubMed] [Google Scholar]
  14. Sine S. M., Claudio T., Sigworth F. J. Activation of Torpedo acetylcholine receptors expressed in mouse fibroblasts. Single channel current kinetics reveal distinct agonist binding affinities. J Gen Physiol. 1990 Aug;96(2):395–437. doi: 10.1085/jgp.96.2.395. [DOI] [PMC free article] [PubMed] [Google Scholar]
  15. Urban B. W., Hladky S. B., Haydon D. A. Ion movements in gramicidin pores. An example of single-file transport. Biochim Biophys Acta. 1980 Nov 4;602(2):331–354. doi: 10.1016/0005-2736(80)90316-8. [DOI] [PubMed] [Google Scholar]
  16. Yellen G. Ionic permeation and blockade in Ca2+-activated K+ channels of bovine chromaffin cells. J Gen Physiol. 1984 Aug;84(2):157–186. doi: 10.1085/jgp.84.2.157. [DOI] [PMC free article] [PubMed] [Google Scholar]

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