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. 2025 Nov 11;15:39450. doi: 10.1038/s41598-025-23073-0

A QSPR study of coronary artery disease drugs using eccentricity-based indices

Naveed Iqbal 1, Shehnaz Akhter 2, Alhafez M Alraih 3, Zahid Iqbal 4, Adnan Aslam 5, Keneni Abera Tola 6,✉
PMCID: PMC12606261  PMID: 41219280

Abstract

Quantitative structure-property relationship (QSPR) and Quantitative structure-activity relationship QSAR modeling are constructed on the principle, which describes that biological activity and physicochemical properties of a chemical compound can be deduced from its chemical structure. These relationships are commonly developed from graph invariants that can be computed from the molecular graphs of chemical compounds. Coronary artery disease occurs when the coronary arteries become narrowed or blocked, which can restrict the flow of oxygen-rich blood to the heart. Coronary artery disease is the leading cause of disability-adjusted life years lost and death worldwide. This study advances QSPR modeling by using eccentricity-based graphical invariants, specifically designed to enhance the predictive accuracy for physicochemical properties of drugs used to treat coronary artery disease, including atorvastatin, simvastatin, rosuvastatin, aspirin, clopidogrel, metoprolol, atenolol, enalapril, lisinopril, amlodipine, diltiazem, nitroglycerin, isosorbide dinitrate, ranolazine, gemfibrozil, and fenofibrate. We used the cubic, logarithmic, quadratic, and linear models to explore the structure-property relationship of drugs for coronary artery disease. We designed the models on the basis of the adjusted r-squared values, assuming the eccentricity-based invariants as independent variables, while the physico-chemical properties of sixteen drugs as dependent variables. The dependent variables include boiling point, enthalpy of vaporization, heavy atom count, molar volume, polarizability, complexity, molecular weight, and molar refractivity. The statistical analysis indicates that the most suitable structure-property models are nonlinear. The findings show that the eccentric Albertson index and the eccentric geometric arithmetic index attain superior predictive performance compared to other indices. The analysis shows that cubic regression is the optimal choice for predicting enthalpy of vaporization, molar refractivity, polarizability, and complexity. In contrast, quadratic regression is the best option for predicting molecular weight, while a linear model is most effective for assessing heavy atom count. Additionally, logarithmic regression is the most suitable choice for boiling point and molar volume. To validate the robustness of our regression models, we used them to assess the properties of five additional coronary artery disease drugs that were not part of the original dataset. The experimental values were compared with forecasted data, revealing a strong correlation between them. This demonstrates the reliability of our regression models in assessing these vital physicochemical parameters.

Keywords: Coronary artery disease drugs, QSPR modeling, Physio-chemical properties, Eccentricity-based invariants

Subject terms: Analytical chemistry, Theoretical chemistry

Introduction

Cheminformatics is a modern field involving Mathematics, Statistics, Physics, Biochemistry, Chemistry, Biology, and other informational sciences that concentrate on treating, analyzing, gathering, and storing chemical data. Cheminformatics is an influential application of information technology to help chemists analyze new problems as well as in understanding, investigating, and organizing scientific data to design unknown processes and compounds1,2. Molecular and chemical graphs play a vital role in virtual screening, computational drug design, quantitative structure-activity (QSAR), quantitative structure-property (QSPR) relationship studies, and chemoinformatics. Chemoinformatics uses graphs for various applications, including database searching and retrieval, physicochemical property prediction, chemical structure illustration, and coding. QSAR study, virtual screening, and QSPR analysis are built on the structure-property principle, which expresses that physicochemical properties and biological activity of chemical compounds can be predicted based on their chemical structure. Such structure-property associations are commonly developed from graph topological indices, fingerprints computed from the molecular graph, and molecular descriptors summed from the chemical structure3–6.

Chemical graph theory investigates the chemical and physical properties, including molar refraction, melting points, freezing points, boiling points, the octanol-water partition coefficient, the motor octane number, the acentric factor, surface tension and density, molar volume, heat of formation and solubility of the chemical graphs with the aid of mathematical models which are developed by the graph-theoretic techniques of graph theory. Cheminformatics approaches are also used to predict properties relevant to drug discovery and optimization. For example, knowledge discovery can be employed to determine lead mixtures in pharmaceutical data matching. This modern technological era concentrates on advancing chemical sciences, including designing diagnostic kits for different biological approaches and infections, drug discovery, and bond formation in chemical compounds. All these developments require powerful tools to make these advancements possible as they progress. An emerging tool for analyzing these phenomena is a topological index, which gives the same numerical value to two isomorphic chemical networks.

Numerous topological invariants are employed in QSPR/QSAR studies3,5, supplying insights into the underlying structures. Different kinds of graph invariants used for this purpose include polynomial, distance, spectral, and degree-based invariants. Among the various classes, distance-based invariants are valuable as they are used to deduce the physicochemical, biological, and pharmacological properties including toxicity, similarity, connectivity, melting point, boiling point, entropy, chirality, surface tension, stability, density, critical temperature, molecular weight, molar refractivity, polarizability, molar volume and the enthalpy of vaporization7–9. Kirmani et al.10 examined the degree-based topological invariants of COVID-19 medications, detecting good relationships with their properties. Liu et al.11 computed the distance-based invariants for antiviral drugs. Havare12 employed the M-polynomial approach to set up QSPR models for cancer drugs. Adnan et al.13 associated the degree-based invariants with properties of anti-tuberculosis drugs. Shanmukha et al.14 viewed anticancer drugs, establishing connections between topological invariants and chemical characteristics. Zaman et al.15 developed QSPR models to forecast molecular properties utilizing a linear regression model. Ravi and Desikan16 operated reduced reverse degree-based invariants to develop QSPR models for hyaluronic acid-paclitaxel conjugates, showing strong predictive power. Gnanaraj et al.17 executed QSPR analysis on NSAID drugs, while Nasir et al.18 discussed blood cancer compounds. Further, QSPR modelling has been applied to study the drugs of infertility treatment drugs19, antitumor20, breast cancer21, anti-malarial22, Colorectal Cancer23, cardiovascular disease24, and HIV/AIDS25. These studies shows that QSPR analysis furnishes a novel technique for predictive modeling, enriching our understanding of how topological invariants can improve drug development and drug design. However, much of the QSPR research has concentrated on degree-based molecular descriptors, creating a gap in the exploration of eccentricity-based descriptors. This study handles this gap by presenting these indices and showing their strong correlation with drug properties, presenting a novel technique to predictive modeling and improving the accuracy of drug design beyond existing approaches. Our research combines machine learning regression strategies with topological invariants from hydrogen-depleted molecular graphs, concentrating on eccentricity-based descriptors. Our purpose is to improve the molecular interactions and enhance predictive modeling, eventually refining the drug design precision. This may aid in developing more useful generalised drugs for the under-considered disease.

Coronary artery disease is described by the formation of atherosclerosis in the coronary arteries, which can sometimes be asymptomatic. Coronary heart disease, also commonly known as ischemic heart disease, includes conditions such as silent myocardial ischemia, acute coronary syndrome, and stable angina. Deaths related to coronary heart disease are largely due to coronary artery disease. Acute coronary syndrome is generally symptomatic and possesses conditions such as myocardial infarction and unstable angina. Coronary artery disease is the leading cause of disability-adjusted life years (DALYs) lost and death worldwide. This issue mainly affects low- and middle-income countries, resulting in about 129 million DALYs and 7 million deaths annually. In 2015, there were 8.9 million deaths and 164.0 million DALYs globally due to coronary artery disease. Survivors of myocardial infarction have a much higher risk of recurrence, and they have an annual mortality rate 5 to 6 times greater than that of people without coronary artery disease26. Coronary artery disease is characterized by an insufficient supply of oxygen and blood to the myocardium. The symptoms occur due to the blockage of the coronary arteries, leading to a mismatch in the demand and supply of oxygen. Coronary artery disease is commonly caused by the formation of plaques in the lumen of coronary arteries that restrict blood flow. Coronary artery disease is the major cause of death worldwide. Coronary artery disease was an unusual cause of death at the start of the 20th century. Casualties due to coronary artery disease increased in the mid-1960s and then decreased. However, this sickness is still the leading cause of death worldwide27. The chance of death from coronary artery disease grows significantly with age. The modifiable risk factors include systolic blood pressure, which plays a vital role, as it contributes to the increased threat of coronary artery disease linked with ageing28–30. The following Table 1 shows some drugs that are commonly used to treat coronary artery disease and their molecular graphs are displayed in Fig. 1.

Table 1.

Coronary artery disease drugs with corresponding chemical structures and therapeutic uses.

Drug name Chemical structure Therapeutic uses for coronary artery disease
Atorvastatin Inline graphic Lowers cholesterol and prevents cardiovascular events by inhibiting HMG-CoA reductase, reducing LDL and triglycerides31.
Simvastatin Inline graphic Lowers cholesterol and cardiovascular risk by blocking HMG-CoA reductase, reducing LDL and triglycerides32.
Rosuvastatin Inline graphic Lowers cholesterol and cardiovascular risk by inhibiting HMG-CoA reductase33.
Aspirin Inline graphic Prevents heart attacks and strokes via antiplatelet effects. Long-term use risks GI irritation and bleeding34,35.
Clopidogrel Inline graphic Antiplatelet drug prevents cardiovascular events in atherosclerosis and post-stenting by inhibiting Inline graphic receptor36.
Metoprolol Inline graphic Inline graphic-blocker treats angina, hypertension, arrhythmias; lowers heart rate, contractility, and oxygen demand37.
Atenolol Inline graphic It is selective Inline graphic-blocker for hypertension, angina, and post- prevention; reduces heart rate and oxygen demand38.
Enalapril Inline graphic ACE inhibitor treats hypertension and heart failure; inhibits angiotensin II conversion, causing vasodilation39.
Lisinopril Inline graphic Long-acting ACE inhibitor for hypertension, heart failure, and post-myocardial infarction; reduces blood pressure and cardiac workload40.
Amlodipine Inline graphic it treats for angina and hypertension; causes vasodilation41.
Diltiazem Inline graphic it treats angina, hypertension, and arrhythmias; reduces contractility and causes vasodilation42.
Nitroglycerin Inline graphic Nitrate vasodilator treats angina and heart failure; releases NO to relax vessels and improve coronary blood flow43,44.
Isosorbide dinitrate Inline graphic Nitrate for angina prevention; vasodilates via NO release, reducing cardiac workload45.
Ranolazine Inline graphic Treats chronic angina by blocking late sodium current, reducing calcium overload and oxygen demand46.
Gemfibrozil Inline graphic Fibrate for hyperlipidemia; lowers triglycerides and raises HDL to reduce cardiovascular risk47.
Fenofibrate Inline graphic Fibrate treats hypertriglyceridemia and hyperlipidemia, lowering cardiovascular risk, especially in metabolic syndrome48.

Fig. 1.

Fig. 1

Coronary artery disease drugs: (a) Atorvastatin, (b) Simvastatin, (c) Rosuvastatin, (d) Aspirin, (e) Clopidogrel, (f) Metoprolol, (g) Atenolol, (h) Enalapril, (i) Lisinopril, (j) Amlodipine, (k) Diltiazem, (l) Nitroglycerin, (m) Isosorbide dinitrate, (n) Ranolazine, (o) Gemfibrozil, (p) Fenofibrate.

Materials and methods

This study begins by gathering data on the physicochemical properties of drugs used for coronary artery disease. The physico-chemical properties for drug compounds are displayed in the Table 2, which are gathered from ChemSpider49 and PubChem50.

Table 2.

Physico-chemical properties of drugs.

Drugs MW
(g/mol)
HAC CO BP
Inline graphic
ENV
(kj/mol)
MR
Inline graphic
PO
Inline graphic
MV
Inline graphic
Atorvastatin 558.6 41 822 722.2 110.7 155.2 61.5 451.9
Simvastatin 418.6 30 706 564.9 97.5 116.4 46.1 376.6
Rosuvastatin 481.5 33 767 745.6 114.1 120.0 47.6 351.9
Aspirin 180.16 13 212 321.4 59.5 44.5 17.7 139.6
Clopidogrel 321.8 21 381 423.7 67.8 85.5 33.9 244.3
Metoprolol 267.36 19 215 398.6 68.5 77.1 30.6 258.7
Atenolol 266.34 19 263 508.0 82.0 74.3 29.4 236.7
Enalapril 376.4 27 519 582.4 91.6 99.5 39.5 312.6
Lisinopril 405.5 29 550 666.4 102.9 107.5 42.6 323.9
Amlodipine 408.9 28 647 527.2 80.2 105.4 41.8 333.0
Diltiazem 414.5 29 565 594.4 88.6 115.2 45.7 327.6
Nitroglycerin 227.09 15 218 295.8 51.4 39.2 15.5 135.9
Isosorbide dinitrate 236.14 16 268 365.9 58.8 44.7 17.7 142.9
Ranolazine 427.5 31 531 624.1 97.2 122.1 48.4 364.0
Gemfibrozil 250.33 18 273 394.7 68.0 71.9 28.5 239.7
Fenofibrate 360.8 25 458 469.8 73.2 97.1 38.5 306.4

The methodology of this study assumes an organized strategy to analyze and forecast the physicochemical properties of coronary artery disease drugs through QSPR modeling, using eccentricity-based topological indices. We develop linear, quadratic, logarithmic, and cubic regression models to correlate the physicochemical properties of sixteen coronary artery disease drugs structures by considering eccentricity-based topological indices as independent variables and physicochemical properties as dependent variables. The linear, logarithmic, quadratic, and cubic regression models have the following mathematical expressions.

graphic file with name d33e1129.gif 1
graphic file with name d33e1135.gif 2
graphic file with name d33e1141.gif 3
graphic file with name d33e1147.gif 4

In the above Equations ((1)-(4)), Inline graphic denotes the physico-chemical property, and Inline graphic is the topological index value of the underlying structure. The constants Inline graphic, Inline graphic and Inline graphic are the regression coefficients and Inline graphic is a constant.

Eccentricity-based topological invariants

Eccentricity-based topological invariants are essential for studying molecular structures, especially in network analysis and mathematical chemistry51 as they offer important information about molecular branching, stability, and general connectivity by encapsulating the extremal distances within a molecular framework52,53. The eccentricity of a vertex r in a molecular graph is represented as the greatest shortest path distance of r to any other vertex in the graph, which is the source of these indices. We denote the eccentricity of a vertex r with Inline graphic We will now discuss several indices based on eccentricity that we utilize in our QSPR modeling. The eccentric version of first Zagreb index of a graph Inline graphic was proposed by Vukičević and Graovac in54 as:

graphic file with name d33e1238.gif

Ghorbani and Hosseinzadeh55 introduced the second eccentric Zagreb index, which can be written as follows:

graphic file with name d33e1248.gif

In56, Ghorbani and Khaki defined the eccentric geometric arithmetic index of Inline graphic as:

graphic file with name d33e1265.gif

The eccentric atom bond connectivity index was first given in57 as:

graphic file with name d33e1275.gif

The concept of sum-connectivity index was given in25, which is defined as:

graphic file with name d33e1286.gif

The Zaman et al. in25 gave the idea of the eccentricity inverse sum and eccentricity Albertson index, their mathematical expressions are as follows:

graphic file with name d33e1296.gif

Calculation of topological invariants

The eccentricity-based edge partitioning for the drugs of coronary artery disease is displayed in Tables 3 and 4. By using this edge partitioning, we aim to compute the eccentricity-based topological indices in this section. Let Inline graphic Inline graphic, . . . , Inline graphic be the molecular graphs of atorvastatin, simvastatin, rosuvastatin, aspirin, clopidogrel, metoprolol, atenolol, enalapril, lisinopril, amlodipine, diltiazem, nitroglycerin, isosorbide dinitrate, ranolazine, gemfibrozil, and fenofibrate respectively.

Table 3.

Edge partitioning of drug compounds based on eccentricities.

Edges Atorvastatin Simvastatin Rosuvastatin Aspirin Clopidogrel Metoprolol Atenolol Enalapril Lisinopril
Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic
(16,15) 4 0 0 0 0 0 0 0 0
(15,14) 3 0 0 0 0 0 0 0 0
(14,13) 7 0 6 0 0 3 0 0 0
(13,12) 6 5 5 0 0 2 4 4 5
(12,12) 0 0 0 0 0 0 0 1 1
(12,11) 8 5 5 0 0 2 2 5 6
(11,10) 7 5 7 0 0 3 2 5 5
(10,10) 1 0 0 0 0 0 0 0 0
(10,9) 5 4 6 0 0 3 4 4 4
(9,9) 0 1 0 0 1 0 0 0 0
(9,8) 3 7 3 0 4 3 3 5 5
(8,7) 0 4 2 0 7 3 3 3 3
(7,7) 0 1 0 0 0 0 1 1 1
(7,6) 0 0 0 0 6 0 0 0 0
(6,5) 0 0 0 6 4 0 0 0 0
(5,5) 0 0 0 0 1 0 0 0 0
(5,4) 0 0 0 4 0 0 0 0 0
(4,3) 0 0 0 3 0 0 0 0 0

Table 4.

Edge partitioning of drug compounds based on eccentricities.

Edges Amlodipine Diltiazem Nitroglycerin Isosorbide dinitrate Ranolazine Gemfibrozil Fenofibrate
Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic
(18,17) 0 0 0 0 5 0 0
(17,16) 0 0 0 0 7 0 0
(16,15) 0 0 0 0 4 0 0
(15,14) 0 0 0 0 2 0 3
(14,13) 0 0 0 0 3 0 3
(13,12) 0 3 0 0 3 0 4
(12,11) 0 2 0 0 2 0 5
(11,10) 4 5 0 0 3 0 3
(10,9) 7 7 0 0 4 5 2
(9,9) 0 1 0 0 0 0 0
(9,8) 5 7 0 4 0 6 4
(8,8) 0 0 0 0 0 0 2
(8,7) 7 4 4 2 0 3 0
(7,7) 1 2 0 0 0 0 0
(7,6) 4 0 4 2 0 2 0
(6,6) 1 0 0 2 0 0 0
(6,5) 0 0 3 4 0 2 0
(5,5) 0 0 0 3 0 0 0
(5,4) 0 0 3 0 0 0 0

To show the computation of eccentricity-based indices, we considered ranolazine (Inline graphic) as the reference structure.

  • i.
    By using the first and second eccentric Zagreb indices and Table 4, we have
    graphic file with name d33e1346.gif
  • ii.
    By using the eccentric geometric arithmetic index and Table 4, we have
    graphic file with name d33e1359.gif
  • iii
    By using the eccentric atom bond connectivity index and Table 4, we have
    graphic file with name d33e1865.gif
  • iv
    By using the eccentric sum-connectivity index and Table 4, we have
    graphic file with name d33e1878.gif
  • v
    By using the eccentric ISI index and Table 4, we have
    graphic file with name d33e1891.gif
  • vi
    By using the eccentricity Albertson index and Table 4, we have
    graphic file with name d33e1904.gif

The values of eccentricity-based topological invariants for other medications are shown in the Tables 5 and 6.

Table 5.

Eccentricity based topological indices for drug molecules.

Drug molecules Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic
Atorvastatin 1047 6392 43.958899 17.431132 9.116591 261.286868 43
Simvastatin 632 3208 31.959034 13.792269 7.284833 157.613889 30
Rosuvastatin 744 4170 33.961252 13.987772 7.345297 185.600365 34
Aspirin 123 296 12.919617 7.589259 4.276295 30.395382 13
Clopidogrel 323 1158 22.943160 11.470044 6.199611 80.368216 21
Metoprolol 393 2106 18.975020 8.042943 4.239484 98.011177 19
Atenolol 374 1901 18.975226 8.212897 4.340592 93.267702 18
Enalapril 564 2915 27.965522 11.960036 6.309985 140.669967 26

Table 6.

Eccentricity based topological indices for drug molecules.

Drug molecules Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic
Lisinopril 612 3203 29.963776 12.742872 6.718499 152.649098 28
Amlodipine 485 2075 28.949677 13.428558 7.164189 120.843157 27
Diltiazem 584 2819 30.959314 13.626448 7.214798 145.627024 28
Nitroglycerin 172 542 13.948251 7.392305 4.046730 42.704895 14
Isosorbide dinitrate 222 751 16.966135 8.754938 4.773319 55.278473 12
Ranolazine 929 6782 32.976175 12.159509 6.320205 231.943893 33
Gemfibrozil 290 1194 17.961799 8.476094 4.534612 72.212059 18
Fenofibrate 584 3386 25.975126 10.594982 5.560636 145.731159 24

Results and discussions

To determine the most suitable topological index for forecasting molecular properties, we perform regression analysis using the R language and SPSS, employing cubic, linear, logarithmic, and quadratic models. For each index, we evaluate the statistical significance of the models by examining metrics such as p-values, standard error, F-statistic, Inline graphic, and adjusted Inline graphic. We aim to specify the model that provides the most robust forecasting. The best-performing model is validated by comparing predicted versus actual values. Our selection criteria focus on achieving the highest adjusted Inline graphic values, the lowest standard error, and statistical effectiveness with Inline graphic. This approach offers a data-driven strategy that strikes a balance between clarity and accuracy.

Analysis of regression models for the molecular weight

Table 7 displays the Inline graphic values and adjusted Inline graphic values of cubic, quadratic, logarithmic, and linear regression models by assuming the sets of values of eccentricity-based invariants as independent variables and the set of values of molecular weight of sixteen drugs as the dependent variable. Figure 2 illustrates a graphical comparison of the adjusted Inline graphic values for these regression models. When we analyse the adjusted Inline graphic values given in Table 7, it is easy to observe that Inline graphic and Inline graphic invariants provide the best values within the linear model, while the other invariants achieve their most suitable fits in the quadratic model. Table 8 displays the statistical analysis of the best regression models for each independent variable. This analysis possesses the p value, standard error, F-statistic, correlation coefficient r, Inline graphic, adjusted Inline graphic, and regression equation. This statistical examination signifies that the eccentric geometric arithmetic index is the most predictive index utilizing a quadratic model.

Table 7.

Comparison of Inline graphic and adjusted Inline graphic-values for different regression models for MW.

Topological Linear Logarithmic Quadratic Cubic
Index Inline graphic Adjusted Inline graphic Inline graphic Adjusted Inline graphic Inline graphic Adjusted Inline graphic Inline graphic Adjusted Inline graphic
Inline graphic 0.874299 0.865320 0.856989 0.846774 0.890339 0.873469 0.890459 0.863073
Inline graphic 0.724687 0.705021 0.772221 0.755951 0.810052 0.780830 0.822879 0.778599
Inline graphic 0.985043 0.983974 0.967256 0.964917 0.986685 Inline graphic 0.987197 0.983997
Inline graphic 0.933879 0.929156 0.927867 0.922715 0.934719 0.924675 0.935251 0.919064
Inline graphic 0.907758 0.901169 0.900360 0.893243 0.908118 0.893982 0.908301 0.885377
Inline graphic 0.873845 0.864834 0.856012 0.845728 0.889872 0.872929 0.889983 0.862479
Inline graphic 0.962844 0.960189 0.942226 0.938099 0.965824 0.960566 0.968124 0.960155

Fig. 2.

Fig. 2

Comparison of adjusted Inline graphic-values.

Table 8.

Best regression models for MW based on adjusted Inline graphic values.

Predictor Goodness of Fit Significance Regression Equation
Index Model r Inline graphic Adj. Inline graphic Std. Error F-statistic p-value
Inline graphic Quadratic 0.993320 0.986685 0.984636 12.980935 4.82e+02 6.43e-13 Inline graphic
Inline graphic Quadratic 0.982764 0.965824 0.960566 20.796562 1.84e+02 2.95e-10 Inline graphic
Inline graphic Linear 0.966374 0.933879 0.929156 27.874683 1.98e+02 1.19e-09 Inline graphic
Inline graphic Linear 0.952763 0.907758 0.901169 32.923394 1.38e+02 1.24e-08 Inline graphic
Inline graphic Quadratic 0.943578 0.890339 0.873469 37.252667 5.28e+01 5.76e-07 Inline graphic
Inline graphic Quadratic 0.943330 0.889872 0.872929 37.332017 5.25e+01 5.92e-07 Inline graphic
Inline graphic Quadratic 0.900029 0.810052 0.780830 49.028568 2.77e+01 2.05e-05 Inline graphic(8e-06) Inline graphic

The comparison of the actual and the predicted values of molecular weights of drugs by using the best forecasted index is illustrated in Table 9. The related graphical comparison is displayed in Fig. 3.

Table 9.

Predicted vs Actual values for MW using the overall best model.

Sample Actual Value Predicted Value Residual Sample Actual Value Predicted Value Residual
Inline graphic 558.60 562.3052 −3.705164 Inline graphic 405.50 406.5006 −1.000645
Inline graphic 418.60 429.9467 −11.346731 Inline graphic 408.90 394.4269 14.473137
Inline graphic 481.50 453.0623 28.437686 Inline graphic 414.50 418.2504 −3.750384
Inline graphic 180.16 189.5003 −9.340299 Inline graphic 227.09 203.4451 23.644881
Inline graphic 321.80 320.7415 1.058469 Inline graphic 236.14 243.7284 −7.588429
Inline graphic 267.36 270.0232 −2.663248 Inline graphic 427.50 441.7412 −14.241224
Inline graphic 266.34 270.0259 −3.685923 Inline graphic 250.33 256.8129 −6.482901
Inline graphic 376.40 382.6083 −6.208289 Inline graphic 360.80 358.4009 2.399063

Fig. 3.

Fig. 3

Actual and predicted values for molecular weight.

Analysis of regression models for the heavy atom count

Table 10 provides the Inline graphic values and adjusted Inline graphic values of cubic, quadratic, logarithmic, and linear regression models by assuming the sets of values of eccentricity-based invariants as independent variables and the set of values of heavy atom count of sixteen drugs as the dependent variable. Figure 4 illustrates a graphical comparison of the adjusted Inline graphic values for these regression models. When we analyse the adjusted Inline graphic values given in Table 10, it is easy to observe that Inline graphic, Inline graphic and Inline graphic invariants provide the best values within the quadratic model, while the other invariants achieve their most suitable fits in the linear model. Table 11 displays the statistical analysis of the best regression models for each independent variable. This analysis possesses the p value, standard error, F-statistic, correlation coefficient r, Inline graphic, adjusted Inline graphic, and regression equation. This statistical examination shows that the eccentric geometric arithmetic index is the most predictive index utilizing a linear model.

Table 10.

Comparison of Inline graphic and adjusted Inline graphic-values for different regression models for HAC.

Topological Linear Logarithmic Quadratic Cubic
Index Inline graphic Adjusted Inline graphic Inline graphic Adjusted Inline graphic Inline graphic Adjusted Inline graphic Inline graphic Adjusted Inline graphic
Inline graphic 0.912235 0.905966 0.871588 0.862415 0.920070 0.907773 0.920436 0.900545
Inline graphic 0.772895 0.756673 0.793271 0.778505 0.842372 0.818122 0.852872 0.816090
Inline graphic 0.994521 Inline graphic 0.962680 0.960014 0.994528 0.993686 0.994817 0.993521
Inline graphic 0.919402 0.913645 0.904109 0.897259 0.919649 0.907287 0.921551 0.901939
Inline graphic 0.890092 0.882241 0.874160 0.865172 0.890751 0.873944 0.892221 0.865276
Inline graphic 0.911825 0.905526 0.870540 0.861293 0.919653 0.907292 0.920004 0.900005
Inline graphic 0.980917 0.979554 0.948883 0.945232 0.981329 0.978456 0.982312 0.977890

Fig. 4.

Fig. 4

Comparison of adjusted Inline graphic-values for heavy atom count.

Table 11.

Best regression models for HAC based on adjusted Inline graphic values.

Predictor Goodness of Fit Significance Regression Equation
Index Model r Inline graphic Adj.Inline graphic Std. Error F-statistic p-value
Inline graphic Linear 0.997257 0.994521 0.994130 0.588763 2541.230259 2.20e-16 Inline graphic
Inline graphic Linear 0.990413 0.980917 0.979554 1.098784 719.646188 1.95e-13 Inline graphic
Inline graphic Linear 0.958855 0.919402 0.913645 2.258151 159.702170 4.80e-09 Inline graphic
Inline graphic Quadratic 0.959203 0.920070 0.907773 2.333662 74.821510 7.37e-08 Inline graphic(9e-06)Inline graphic
Inline graphic Quadratic 0.958986 0.919653 0.907292 2.339741 74.399489 7.63e-08 Inline graphic
Inline graphic Linear 0.943447 0.890092 0.882241 2.636980 113.378882 4.27e-08 Inline graphic
Inline graphic Quadratic 0.917808 0.842372 0.818122 3.277180 34.736386 6.09e-06 Inline graphic(1e-06)Inline graphic

The comparison of the actual and the predicted values of heavy atom count of drugs by using the best forecasted index is illustrated in Table 12. The related graphical comparison is displayed in Fig. 5.

Table 12.

Predicted vs Actual values for HAC using the overall best model.

Sample Actual Value Predicted Value Residual Sample Actual Value Predicted Value Residual
Inline graphic 41 41.13679 −0.136790 Inline graphic 29 28.56009 0.439906
Inline graphic 30 30.35313 −0.353129 Inline graphic 28 27.64878 0.351225
Inline graphic 33 32.15242 0.847580 Inline graphic 29 29.45473 −0.454733
Inline graphic 13 13.24339 −0.243386 Inline graphic 15 14.16777 0.832234
Inline graphic 21 22.25103 −1.251028 Inline graphic 16 16.87978 −0.879783
Inline graphic 19 18.68507 0.314935 Inline graphic 31 31.26718 −0.267182
Inline graphic 19 18.68525 0.314750 Inline graphic 18 17.77454 0.225465
Inline graphic 27 26.76437 0.235634 Inline graphic 25 24.97570 0.024301

Fig. 5.

Fig. 5

Actual and predicted values for heavy atom count.

Analysis of regression models for the complexity

Table 13 provides the Inline graphic values and adjusted Inline graphic values of cubic, quadratic, logarithmic, and linear regression models by assuming the sets of values of eccentricity-based invariants as independent variables and the set of values of complexity of sixteen drugs as the dependent variable. Figure 6 illustrates a graphical comparison of the adjusted Inline graphic values for these regression models. When we analyse the adjusted Inline graphic values given in Table 13, it is easy to observe that Inline graphic and Inline graphic invariants provide the best values within the quadratic model, while the other invariants achieve their most suitable fits in the cubic model. Table 14 displays the statistical analysis of the best regression models for each independent variable. This analysis possesses the p value, standard error, F-statistic, correlation coefficient r, Inline graphic, adjusted Inline graphic, and regression equation. This statistical examination tells us that the eccentric atom bond connectivity index is the most predictive index utilizing a cubic model.

Table 13.

Comparison of Inline graphic and adjusted Inline graphic-values for different regression models for CO.

Topological Linear Logarithmic Quadratic Cubic
Index Inline graphic Adjusted Inline graphic Inline graphic Adjusted Inline graphic Inline graphic Adjusted Inline graphic Inline graphic Adjusted Inline graphic
Inline graphic 0.714386 0.693985 0.693771 0.671898 0.736900 0.696423 0.749029 0.686286
Inline graphic 0.546616 0.514231 0.590441 0.561187 0.654342 0.601164 0.712258 0.640322
Inline graphic 0.902905 0.895969 0.878777 0.870118 0.905060 0.890454 0.928945 0.911182
Inline graphic 0.937246 0.932764 0.933147 0.928372 0.940206 0.931007 0.952524 Inline graphic
Inline graphic 0.928776 0.923689 0.927047 0.921836 0.932090 0.921643 0.940695 0.925869
Inline graphic 0.713747 0.693301 0.692581 0.670622 0.736236 0.695657 0.748462 0.685578
Inline graphic 0.867144 0.857654 0.840637 0.829253 0.870616 0.850711 0.899973 0.874966

Fig. 6.

Fig. 6

Comparison of adjusted Inline graphic-values for complexity.

Table 14.

Best regression models for CO based on adjusted Inline graphic values.

Predictor Goodness of Fit Significance Regression Equation
Index Model r Inline graphic Adj.Inline graphic Std. Error F-statistic p-value
Inline graphic Cubic −0.975973 0.952524 0.940655 50.528602 80.252925 3.29e-08 Inline graphic
Inline graphic Cubic −0.969894 0.940695 0.925869 56.473556 63.448032 1.24e-07 Inline graphic
Inline graphic Cubic −0.963818 0.928945 0.911182 61.815260 52.294782 3.66e-07 Inline graphic
Inline graphic Cubic −0.948669 0.899973 0.874966 73.342963 35.989194 2.81e-06 Inline graphic
Inline graphic Quadratic 0.858429 0.736900 0.696423 114.282391 18.205416 1.70e-04 Inline graphic
Inline graphic Quadratic 0.858042 0.736236 0.695657 114.426544 18.143208 1.73e-04 Inline graphic
Inline graphic Cubic −0.843954 0.712258 0.640322 124.394602 9.901334 0.001444 Inline graphic

The comparison of the actual and the predicted values of complexity of drugs by using the best forecasted index is illustrated in Table 15. The related graphical comparison is displayed in Fig. 7.

Table 15.

Predicted vs Actual values for CO using the overall best model.

Sample Actual Value Predicted Value Residual Sample Actual Value Predicted Value Residual
Inline graphic 822 828.9449 −6.944899 Inline graphic 550 579.4878 −29.487787
Inline graphic 706 668.2950 37.705025 Inline graphic 647 638.5343 8.465707
Inline graphic 767 683.6907 83.309348 Inline graphic 565 654.8937 −89.893685
Inline graphic 212 224.8317 −12.831685 Inline graphic 218 221.6271 −3.627067
Inline graphic 381 466.2723 −85.272284 Inline graphic 268 266.5948 1.405189
Inline graphic 215 236.6888 −21.688792 Inline graphic 531 527.6011 3.398949
Inline graphic 263 242.6386 20.361353 Inline graphic 273 253.3600 19.639958
Inline graphic 519 509.7713 9.228716 Inline graphic 458 391.7680 66.231954

Fig. 7.

Fig. 7

Actual and predicted values for complexity.

Analysis of regression models for the boiling point

Table 16 provides the Inline graphic values and adjusted Inline graphic values of cubic, quadratic, logarithmic, and linear regression models by assuming the sets of values of eccentricity-based invariants as independent variables and the set of values of boiling point of sixteen drugs as the dependent variable. Figure 8 illustrates a graphical comparison of the adjusted Inline graphic values for these regression models. When we analyse the adjusted Inline graphic values given in Table 16, we see that Inline graphic and Inline graphic provide best values within the quadratic model, Inline graphic and Inline graphic give best values within the cubic model, while the other invariants achieve their most suitable fits in the logarithmic model. Table 17 displays the statistical analysis of the best regression models for each independent variable. This analysis possesses the p value, standard error, F-statistic, correlation coefficient r, Inline graphic, adjusted Inline graphic, and regression equation. This statistical examination signifies that the eccentric geometric arithmetic index is the most predictive index utilizing a logarithmic model.

Table 16.

Comparison of Inline graphic and adjusted Inline graphic-values for different regression models for BP.

Topological Linear Logarithmic Quadratic Cubic
Index Inline graphic Adjusted Inline graphic Inline graphic Adjusted Inline graphic Inline graphic Adjusted Inline graphic Inline graphic Adjusted Inline graphic
Inline graphic 0.803841 0.789830 0.815672 0.802506 0.845792 0.822068 0.852620 0.815775
Inline graphic 0.680966 0.658178 0.760167 0.743037 0.813062 0.784302 0.830574 0.788217
Inline graphic 0.848465 0.837642 0.853974 Inline graphic 0.861418 0.840098 0.867917 0.834896
Inline graphic 0.750877 0.733082 0.760776 0.743688 0.760995 0.724225 0.761306 0.701633
Inline graphic 0.718354 0.698236 0.725830 0.706247 0.726539 0.684468 0.727312 0.659140
Inline graphic 0.803609 0.789581 0.814910 0.801689 0.845548 0.821786 0.852449 0.815561
Inline graphic 0.842582 0.831338 0.842332 0.831070 0.856414 0.834324 0.872757 0.840946

Fig. 8.

Fig. 8

Comparison of adjusted Inline graphic-values for boiling point.

Table 17.

Best regression models for BP based on adjusted Inline graphic values.

Predictor Goodness of Fit Significance Regression Equation
Index Model r Inline graphic Adj.Inline graphic Std. Error F-statistic p-value
Inline graphic Logarithmic 0.924107 0.853974 0.843543 55.050756 81.873217 3.18e-07 Inline graphic
Inline graphic Cubic −0.934215 0.872757 0.840946 55.505753 27.435952 1.17e-05 Inline graphic
Inline graphic Quadratic 0.919670 0.845792 0.822068 58.707505 35.650878 5.28e-06 Inline graphic
Inline graphic Quadratic 0.919537 0.845548 0.821786 58.754019 35.584165 5.34e-06 Inline graphic
Inline graphic Cubic 0.911358 0.830574 0.788217 64.048857 19.609123 6.41e-05 Inline graphic
Inline graphic Logarithmic 0.872225 0.760776 0.743688 70.461293 44.522472 1.06e-05 Inline graphic
Inline graphic Logarithmic 0.851957 0.725830 0.706247 75.432358 37.063256 2.80e-05 Inline graphic

The comparison of the actual and the predicted values of boiling point of drugs by using the best forecasted index is illustrated in Table 18. The related graphical comparison is displayed in Fig. 9.

Table 18.

Predicted vs Actual values for BP using the overall best model.

Sample Actual Value Predicted Value Residual Sample Actual Value Predicted Value Residual
Inline graphic 722.2 731.7384 −9.538355 Inline graphic 666.4 591.0799 75.320112
Inline graphic 564.9 614.7388 −49.838784 Inline graphic 527.2 578.4440 −51.244037
Inline graphic 745.6 637.0396 108.560358 Inline graphic 594.4 603.0752 −8.675165
Inline graphic 321.4 282.3442 39.055790 Inline graphic 295.8 310.4591 −14.659054
Inline graphic 423.7 493.1022 −69.402224 Inline graphic 365.9 382.3415 −16.441513
Inline graphic 398.6 423.4103 −24.810276 Inline graphic 624.1 626.2370 −2.137044
Inline graphic 508.0 423.4143 84.585740 Inline graphic 394.7 403.2707 −8.570745
Inline graphic 582.4 565.7507 16.649253 Inline graphic 469.8 538.6541 −68.854056

Fig. 9.

Fig. 9

Actual and predicted values for boiling point.

Analysis of regression models for the enthalpy of vaporization

Table 19 gives the Inline graphic values and adjusted Inline graphic values of cubic, quadratic, logarithmic, and linear regression models by assuming the sets of values of eccentricity-based invariants as independent variables and the set of values of enthalpy of vaporization of sixteen drugs as the dependent variable. Figure 10 illustrates a graphical comparison of the adjusted Inline graphic values for these regression models. When we analyse the adjusted Inline graphic values given in Table 19, we see that Inline graphic provides best value within the linear model, Inline graphic and Inline graphic provide best values within the logarithmic model, while the other invariants achieve their most suitable fits in the cubic model. Table 20 displays the statistical analysis of the best regression models for each independent variable. This analysis possesses the p value, standard error, F-statistic, correlation coefficient r, Inline graphic, adjusted Inline graphic, and regression equation. This statistical examination tells us that the eccentric Albertson index is the most predictive index utilizing a cubic model.

Table 19.

Comparison of Inline graphic and adjusted Inline graphic-values for different regression models for ENV.

Topological Linear Logarithmic Quadratic Cubic
Index Inline graphic Adjusted Inline graphic Inline graphic Adjusted Inline graphic Inline graphic Adjusted Inline graphic Inline graphic Adjusted Inline graphic
Inline graphic 0.788437 0.773325 0.783623 0.768168 0.822969 0.795734 0.836827 0.796034
Inline graphic 0.673627 0.650315 0.733567 0.714536 0.800774 0.770124 0.827186 0.783983
Inline graphic 0.817257 0.804204 0.811346 0.797871 0.824070 0.797004 0.837810 0.797263
Inline graphic 0.712015 0.691445 0.714198 0.693784 0.716535 0.672925 0.720105 0.650131
Inline graphic 0.679569 0.656681 0.680322 0.657488 0.682991 0.634220 0.687486 0.609358
Inline graphic 0.788191 0.773061 0.782728 0.767209 0.822704 0.795428 0.836688 0.795859
Inline graphic 0.833111 0.821190 0.829741 0.817579 0.844390 0.820450 0.862343 Inline graphic

Fig. 10.

Fig. 10

Comparison of adjusted Inline graphic-values for enthalpy of vaporization.

Table 20.

Best regression models for ENV based on adjusted Inline graphic values.

Predictor Goodness of Fit Significance Regression Equation
Index Model r Inline graphic Adj.Inline graphic Std. Error F-statistic p-value
Inline graphic Cubic −0.928624 0.862343 0.827929 7.971441 25.057825 1.87e-05 Inline graphic
Inline graphic Linear 0.904023 0.817257 0.804204 8.503258 62.610334 1.56e-06 Inline graphic
Inline graphic Cubic 0.914783 0.836827 0.796034 8.678847 20.513914 5.13e-05 Inline graphic
Inline graphic Cubic 0.914706 0.836688 0.795859 8.682565 20.492929 5.16e-05 Inline graphic
Inline graphic Cubic 0.909498 0.827186 0.783983 8.931564 19.146311 7.21e-05 Inline graphic
Inline graphic Logarithmic 0.845103 0.714198 0.693784 10.634015 34.985045 3.77e-05 Inline graphic
Inline graphic Logarithmic 0.824816 0.680322 0.657488 11.246601 29.794084 8.43e-05 Inline graphic

The comparison of the actual and the predicted values of enthalpy of vaporization of drugs by using the best forecasted index is illustrated in Table 21. The related graphical comparison is displayed in Fig. 11.

Table 21.

Predicted vs Actual values for ENV using the overall best model.

Sample Actual Value Predicted Value Residual Sample Actual Value Predicted Value Residual
Inline graphic 110.7 111.54190 −0.841905 Inline graphic 102.9 92.08564 10.814355
Inline graphic 97.5 97.15986 0.340135 Inline graphic 80.2 89.44396 −9.243956
Inline graphic 114.1 105.83614 8.263859 Inline graphic 88.6 92.08564 −3.485645
Inline graphic 59.5 58.64489 0.855105 Inline graphic 51.4 59.77348 −8.373478
Inline graphic 67.8 73.55967 −5.759672 Inline graphic 58.8 57.79462 1.005377
Inline graphic 68.5 68.79664 −0.296644 Inline graphic 97.2 103.90784 −6.707836
Inline graphic 82.0 66.61697 15.383031 Inline graphic 68.0 66.61697 1.383031
Inline graphic 91.6 86.76281 4.837189 Inline graphic 73.2 81.37295 −8.172946

Fig. 11.

Fig. 11

Actual and predicted values for enthalpy of vaporization.

Analysis of regression models for the molar refractivity

Table 22 provides the Inline graphic values and adjusted Inline graphic values of cubic, quadratic, logarithmic, and linear regression models by assuming the sets of values of eccentricity-based invariants as independent variables and the set of values of molar refractivity of sixteen drugs as the dependent variable. Figure 12 illustrates a graphical comparison of the adjusted Inline graphic values for these regression models. When we analyse the adjusted Inline graphic values given in Table 22, we see that Inline graphic provides best value within the quadratic model, Inline graphic gives best value within the linear model, Inline graphic has the best value within the logarithmic model, while the other invariants achieve their most suitable fits in the cubic model. Table 23 displays the statistical analysis of the best regression models for each independent variable. This analysis possesses the p value, standard error, F-statistic, correlation coefficient r, Inline graphic, adjusted Inline graphic, and regression equation. This statistical examination signifies that the eccentric Albertson index is the most predictive index utilizing a cubic model.

Table 22.

Comparison of Inline graphic and adjusted Inline graphic-values for different regression models for MR.

Topological Linear Logarithmic Quadratic Cubic
Index Inline graphic Adjusted Inline graphic Inline graphic Adjusted Inline graphic Inline graphic Adjusted Inline graphic Inline graphic Adjusted Inline graphic
Inline graphic 0.897725 0.890419 0.906348 0.899659 0.924093 0.912415 0.931142 0.913928
Inline graphic 0.765487 0.748736 0.839585 0.828127 0.860802 0.839387 0.860990 0.826237
Inline graphic 0.960663 0.957854 0.961736 0.959003 0.967005 0.961928 0.969759 0.962199
Inline graphic 0.868511 0.859119 0.869037 0.859683 0.870558 0.850643 0.879394 0.849243
Inline graphic 0.835144 0.823369 0.831532 0.819499 0.835845 0.810591 0.840504 0.800630
Inline graphic 0.897364 0.890033 0.905364 0.898604 0.923683 0.911942 0.930630 0.913287
Inline graphic 0.961233 0.958463 0.977055 0.975416 0.977164 0.973650 0.982530 Inline graphic

Fig. 12.

Fig. 12

Comparison of adjusted Inline graphic-values for Molar refractivity.

Table 23.

Best regression models for MR based on adjusted Inline graphic values.

Predictor Goodness of Fit Significance Regression Equation
Index Model r Inline graphic Adj.Inline graphic Std. Error F-statistic p-value
Inline graphic Cubic 0.991227 0.982530 0.978163 4.762799 224.970112 8.27e-11 Inline graphic
Inline graphic Cubic 0.984763 0.969759 0.962199 6.266424 128.270733 2.21e-09 Inline graphic
Inline graphic Cubic 0.964957 0.931142 0.913928 9.455796 54.090772 3.03e-07 Inline graphic
Inline graphic Cubic 0.964691 0.930630 0.913287 9.490926 53.661534 3.17e-07 Inline graphic
Inline graphic Logarithmic 0.932222 0.869037 0.859683 12.073184 92.900801 1.47e-07 Inline graphic
Inline graphic Quadratic 0.927794 0.860802 0.839387 12.916869 40.196041 2.71e-06 Inline graphic(2e-06)Inline graphic
Inline graphic Linear 0.913862 0.835144 0.823369 13.545661 70.922783 7.49e-07 Inline graphic

The comparison of the actual and the predicted values of molar refractivity of drugs by using the best forecasted index is illustrated in Table 24. The related graphical comparison is displayed in Fig. 13.

Table 24.

Predicted vs Actual values for MR using the overall best model.

Sample Actual Value Predicted Value Residual Sample Actual Value Predicted Value Residual
Inline graphic 155.2 154.22907 0.970928 Inline graphic 107.5 108.57082 −1.070823
Inline graphic 116.4 114.20733 2.192674 Inline graphic 105.4 105.63813 −0.238130
Inline graphic 120.0 125.14759 −5.147589 Inline graphic 115.2 108.57082 6.629177
Inline graphic 44.5 44.18539 0.314611 Inline graphic 39.2 50.46877 −11.268771
Inline graphic 85.5 85.12853 0.371465 Inline graphic 44.7 37.50657 7.193431
Inline graphic 77.1 76.68259 0.417409 Inline graphic 122.1 122.40208 −0.302081
Inline graphic 74.3 72.06419 2.235807 Inline graphic 71.9 72.06419 −0.164193
Inline graphic 99.5 102.60139 −3.101392 Inline graphic 97.1 96.13252 0.967477

Fig. 13.

Fig. 13

Actual and predicted values for Molar refractivity.

Analysis of regression models for the polarizability

Table 25 provides the Inline graphic values and adjusted Inline graphic values of cubic, quadratic, logarithmic, and linear regression models by assuming the sets of values of eccentricity-based invariants as independent variables and the set of values of polarizability of sixteen drugs as the dependent variable. Figure 14 illustrates a graphical comparison of the adjusted Inline graphic values for these regression models. When we analyse the adjusted Inline graphic values given in Table 25, we see that Inline graphic provides best value within the quadratic model, Inline graphic gives best value within the linear model, Inline graphic has the best value within the logarithmic model, while the other invariants achieve their most suitable fits in the cubic model. Table 26 displays the statistical analysis of the best regression models for each independent variable. This analysis possesses the p value, standard error, F-statistic, correlation coefficient r, Inline graphic, adjusted Inline graphic, and regression equation. This statistical examination signifies that the eccentric Albertson index is the most predictive index utilizing a cubic model.

Table 25.

Comparison of Inline graphic and adjusted Inline graphic-values for different regression models for PO.

Topological Linear Logarithmic Quadratic Cubic
Index Inline graphic Adjusted Inline graphic Inline graphic Adjusted Inline graphic Inline graphic Adjusted Inline graphic Inline graphic Adjusted Inline graphic
Inline graphic 0.897353 0.890021 0.905979 0.899263 0.923848 0.912133 0.930764 0.913455
Inline graphic 0.765103 0.748325 0.839134 0.827644 0.860636 0.839195 0.860811 0.826013
Inline graphic 0.960430 0.957603 0.961601 0.958859 0.966848 0.961748 0.969535 0.961919
Inline graphic 0.868466 0.859071 0.869129 0.859781 0.870573 0.850661 0.879358 0.849198
Inline graphic 0.835155 0.823380 0.831691 0.819669 0.835895 0.810648 0.840544 0.800680
Inline graphic 0.896991 0.889633 0.904991 0.898205 0.923437 0.911658 0.930250 0.912813
Inline graphic 0.961100 0.958322 0.977127 0.975493 0.977191 0.973682 0.982521 Inline graphic

Fig. 14.

Fig. 14

Comparison of adjusted Inline graphic-values for Polarizability.

Table 26.

Best regression models for PO based on adjusted Inline graphic values.

Predictor Goodness of Fit Significance Regression Equation
Index Model r Inline graphic Adj.Inline graphic Std. Error F-statistic p-value
Inline graphic Cubic 0.991222 0.982521 0.978151 1.888591 224.845079 8.30e-11 Inline graphic
Inline graphic Cubic 0.984650 0.969535 0.961919 2.493319 127.299070 2.31e-09 Inline graphic
Inline graphic Cubic 0.964761 0.930764 0.913455 3.758760 53.773428 3.13e-07 Inline graphic
Inline graphic Cubic 0.964495 0.930250 0.912813 3.772682 53.347838 3.27e-07 Inline graphic
Inline graphic Logarithmic 0.932271 0.869129 0.859781 4.784400 92.975338 1.46e-07 Inline graphic
Inline graphic Quadratic 0.927704 0.860636 0.839195 5.123580 40.140327 2.74e-06 Inline graphic(1e-06)Inline graphic
Inline graphic Linear 0.913868 0.835155 0.823380 5.369623 70.928037 7.49e-07 Inline graphic

The comparison of the actual and the predicted values of polarizability of drugs by using the best forecasted index is illustrated in Table 27. The related graphical comparison is displayed in Fig. 15.

Table 27.

Predicted vs Actual values for PO using the overall best model.

Sample Actual Value Predicted Value Residual Sample Actual Value Predicted Value Residual
Inline graphic 61.5 61.11459 0.385409 Inline graphic 42.6 43.04924 −0.449242
Inline graphic 46.1 45.28386 0.816143 Inline graphic 41.8 41.88624 −0.086241
Inline graphic 47.6 49.61778 −2.017779 Inline graphic 45.7 43.04924 2.650758
Inline graphic 17.7 17.51328 0.186725 Inline graphic 15.5 20.00449 −4.504490
Inline graphic 33.9 33.75051 0.149487 Inline graphic 17.7 14.86552 2.834481
Inline graphic 30.6 30.40022 0.199777 Inline graphic 48.4 48.53066 −0.130656
Inline graphic 29.4 28.56838 0.831620 Inline graphic 28.5 28.56838 −0.068380
Inline graphic 39.5 40.68182 −1.181815 Inline graphic 38.5 38.11580 0.384203

Fig. 15.

Fig. 15

Actual and predicted values for Polarizability.

Analysis of regression models for the molar volume

Table 28 provides the Inline graphic values and adjusted Inline graphic values of cubic, quadratic, logarithmic, and linear regression models by assuming the sets of values of eccentricity-based invariants as independent variables and the set of values of molar volume of sixteen drugs as the dependent variable. Figure 16 illustrates a graphical comparison of the adjusted Inline graphic values for these regression models. When we analyse the adjusted Inline graphic values given in Table 28, we see that Inline graphic provides best value within the quadratic model, Inline graphic gives best value within the linear model, Inline graphic and Inline graphic have the best values within the cubic model, while the other invariants achieve their most suitable fits in the logarithmic model. Table 29 displays the statistical analysis of the best regression models for each independent variable. This analysis possesses the p value, standard error, F-statistic, correlation coefficient r, Inline graphic, adjusted Inline graphic, and regression equation. This statistical examination shows that the eccentric Albertson index is the most predictive index utilizing a logarithmic model.

Table 28.

Comparison of Inline graphic and adjusted Inline graphic-values for different regression models for MV.

Topological Linear Logarithmic Quadratic Cubic
Index Inline graphic Adjusted Inline graphic Inline graphic Adjusted Inline graphic Inline graphic Adjusted Inline graphic Inline graphic Adjusted Inline graphic
Inline graphic 0.877078 0.868298 0.916443 0.910475 0.922256 0.910295 0.932683 0.915853
Inline graphic 0.746801 0.728716 0.863104 0.853326 0.874375 0.855048 0.876738 0.845923
Inline graphic 0.922835 0.917324 0.936960 0.932457 0.935595 0.925687 0.940750 0.925938
Inline graphic 0.813248 0.799908 0.816353 0.803235 0.816331 0.788074 0.824273 0.780341
Inline graphic 0.775586 0.759557 0.772828 0.756601 0.776494 0.742108 0.779033 0.723792
Inline graphic 0.876800 0.868000 0.915662 0.909637 0.921932 0.909922 0.932224 0.915280
Inline graphic 0.931461 0.926565 0.965298 Inline graphic 0.960078 0.953936 0.969763 0.962203

Fig. 16.

Fig. 16

Comparison of adjusted Inline graphic-values for molar volume.

Table 29.

Best regression models for MV based on adjusted Inline graphic values.

Predictor Goodness of Fit Significance Regression Equation
Index Model r Inline graphic Adj.Inline graphic Std. Error F-statistic p-value
Inline graphic Logarithmic 0.982496 0.965298 0.962819 17.538671 389.436981 1.29e-11 Inline graphic
Inline graphic Logarithmic 0.967967 0.936960 0.932457 23.638944 208.081783 8.53e-10 Inline graphic
Inline graphic Cubic 0.965755 0.932683 0.915853 26.385002 55.420125 2.65e-07 Inline graphic (1e-06)Inline graphic
Inline graphic Cubic 0.965517 0.932224 0.915280 26.474750 55.017946 2.76e-07 Inline graphic
Inline graphic Quadratic 0.935080 0.874375 0.855048 34.629854 45.241353 1.39e-06 Inline graphic(8e-06)Inline graphic
Inline graphic Logarithmic 0.903523 0.816353 0.803235 40.347106 62.233226 1.61e-06 Inline graphic
Inline graphic Linear 0.880674 0.775586 0.759557 44.601067 48.384771 6.70e-06 Inline graphic

The comparison of the actual and the predicted values of molar volume of drugs by using the best forecasted index is illustrated in Table 30. The related graphical comparison is displayed in Fig. 17.

Table 30.

Predicted vs Actual values for MV using the overall best model.

Sample Actual Value Predicted Value Residual Sample Actual Value Predicted Value Residual
Inline graphic 451.9 438.2576 13.642367 Inline graphic 323.9 333.8990 −9.998976
Inline graphic 376.6 350.6824 25.917627 Inline graphic 333.0 325.0521 7.947917
Inline graphic 351.9 381.1299 −29.229905 Inline graphic 327.6 333.8990 −6.298976
Inline graphic 139.6 147.2544 −7.654367 Inline graphic 135.9 165.2821 −29.382077
Inline graphic 244.3 263.9166 −19.616640 Inline graphic 142.9 127.7830 15.117043
Inline graphic 258.7 239.5701 19.129939 Inline graphic 364.0 373.8678 −9.867791
Inline graphic 236.7 226.4175 10.282480 Inline graphic 239.7 226.4175 13.282480
Inline graphic 312.6 315.8713 −3.271266 Inline graphic 306.4 296.3999 10.000144

Fig. 17.

Fig. 17

Actual and predicted values for molar volume.

Validation

To validate the performance of our regression models, we considered five coronary artery disease drug structures: valsartan, sacubitril, rivaroxaban, perindopril, and ticagrelor. The molecular graphs of these drug structures are displayed in Fig. 18.

Fig. 18.

Fig. 18

Chemical structures of the studied compounds: (a) Valsartan, (b) Sacubitril, (c) Rivaroxaban, (d) Perindopril, and (e) Ticagrelor.

The experimental values for physicochemical properties of these compounds were acquired from ChemSpider and PubChem and are outlined in Table 31. By using eccentricity-based edge-partitioning procedures, we computed the eccentricity-based invariants for drug structures (see Table 32) and used our regression models to forecast their properties. The predictive performance was estimated using MAE and RMSE. A comparison between the experimentally model-predicted and observed values (shown in Table 33) showed close alignment. These outcomes indicate that the linear, logarithmic, cubic, and quadratic regression models designed in this study act as reliable predictive means for assessing key physicochemical properties of coronary artery disease drug structures.

Table 31.

Physico-chemical properties of drugs.

Drugs MW
(g/mol)
HAC CO BP
Inline graphic
ENV
(kj/mol)
MR
Inline graphic
PO
Inline graphic
MV
Inline graphic
Valsartan 435.5 32 608 684.9 105.5 120.6 47.8 359.1
Sacubitril 411.5 30 550 656.9 101.6 113.6 45 357.4
Rivaroxaban 435.9 29 645 732.6 106.9 106.7 42.3 298.5
Perindopril 368.5 26 524 537.4 89.1 96.2 38.1 320.4
Ticagrelor 522.6 36 736 777.6 118.7 126.3 50.1 311.9

Table 32.

Topological Indices of Drug Molecules.

Drug molecules Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic
Valsartan 793 4749 33.969953 13.601934 7.123505 197.913319 31
Sacubitril 720 4298 30.970276 12.427407 6.508990 179.671143 30
Rivaroxaban 822 5474 31.977398 12.286244 6.410039 205.223735 28
Perindopril 500 2368 26.958165 11.963250 6.341157 124.637342 26
Ticagrelor 1041 6982 39.969904 15.230152 7.936053 259.883118 37

Table 33.

Experimental and Predicted Values with Error Metrics.

Property Drugs
Valsartan Sacubitril Rivaroxaban Perindopril Ticagrelor
Molecular weight
Experimental 435.5 411.5 435.9 368.5 522.6
Predicted 453.161382 418.3792 430.1606 370.4077 519.9526
RMSE 17.66 6.88 5.74 1.91 2.65
MAE 17.66 6.88 5.74 1.91 2.65
Heavy atom count
Experimental 32 30 29 26 36
Predicted 32.160255 29.4646 30.3696 25.8591 37.5521
RMSE 0.16 0.54 1.37 0.14 1.55
MAE 0.16 0.54 1.37 0.14 1.55
Complexity
Experimental 608 550 645 524 736
Predicted 652.887171 551.5214 538.9274 510.0584 768.0438
RMSE 44.89 1.52 106.07 13.94 32.04
MAE 44.89 1.52 106.07 13.94 32.04
Boiling point
Experimental 684.9 656.9 732.6 537.4 777.6
Predicted 637.133657 603.2051 614.9496 552.2869 696.8263
RMSE 47.77 53.69 117.65 14.89 80.77
MAE 47.77 53.69 117.65 14.89 80.77
Enthalpy of vaporization
Experimental 105.5 101.6 106.9 89.1 118.7
Predicted 99.544922 97.1599 92.0856 86.7628 110.3402
RMSE 5.96 4.44 14.81 2.34 8.36
MAE 5.96 4.44 14.81 2.34 8.36
Molar Refractivity
Experimental 120.6 113.6 106.7 96.2 126.3
Predicted 116.954328 114.2073 108.5708 102.6014 133.7173
RMSE 3.65 0.61 1.87 6.40 7.42
MAE 3.65 0.61 1.87 6.40 7.42
Polarizability
Experimental 47.8 45.0 42.3 38.1 50.1
Predicted 46.359014 45.2839 43.0492 40.6818 53.0088
RMSE 1.44 0.28 0.75 2.58 2.91
MAE 1.44 0.28 0.75 2.58 2.91
Molar volume
Experimental 359.1 357.4 298.5 320.4 311.9
Predicted 358.658917 350.6824 333.8990 315.8713 401.6996
RMSE 0.44 6.72 35.40 4.53 89.80
MAE 0.44 6.72 35.40 4.53 89.80

Conclusion

Contributions

This study utilized the eccentricity-based edge partitioning approaches to compute the associated graph invariants of drugs used to treat coronary artery disease. In this examination, the cubic, quadratic, linear, and logarithmic models were developed, and their prediction performance was compared. The comparison showed that most of the physicochemical properties were best predicted using the cubic models. Quadratic regression analysis revealed the eccentric geometric arithmetic index as the top predictor of molecular weight, with the eccentric Albertson index a close second. The eccentric atom bond connectivity and eccentric sum connectivity indices also showed strong predictive ability in linear regression, ranking third and fourth, respectively. For the heavy atom count, linear regression analysis showed that the eccentric geometric arithmetic index was the best predictor, followed by the eccentric Albertson index. The eccentric atom bond connectivity index in linear regression, and eccentric first Zagreb index in quadratic regression, were third and fourth, respectively. For complexity, the eccentric atom bond connectivity index was the best predictor in cubic regression, followed by the eccentric sum connectivity index. The eccentric geometric arithmetic index and eccentric Albertson index were third and fourth, respectively. For the boiling point, logarithmic regression analysis showed that the eccentric geometric arithmetic index was the best forecaster, followed closely by the eccentric Albertson index in cubic regression. The eccentric first Zagreb index and eccentric inverse sum index in quadratic regression were third and fourth, respectively. For the enthalpy of vaporization, cubic regression analysis showed that the eccentric Albertson index was the top predictor, followed by the eccentric geometric arithmetic index in linear regression. The eccentric first Zagreb index and eccentric inverse sum index in cubic regression were third and fourth, respectively. For molar refractivity, and polarizability, cubic regression analysis showed that the eccentric Albertson index was the top predictor, followed by the eccentric geometric arithmetic index. The eccentric first Zagreb index and eccentric inverse sum index were third and fourth, respectively. For molar volume, logarithmic regression analysis showed that the eccentric Albertson index was the top predictor, followed closely by the eccentric geometric arithmetic index. The eccentric first Zagreb index and eccentric inverse sum index in cubic regression were third and fourth, respectively. These outcomes improve the development of drugs for coronary artery disease by helping the forecast of physicochemical properties, thereby helping more efficient optimization and identification of potential therapeutics.

Study implications

  • i.

    Improved estimation exactness for molar refractivity, boiling points, and other fundamental physicochemical properties.

  • ii.

    Suggested scalable tools for molecular screening and drug development.

  • iii.

    Provided the cheminformatics applications in pharmaceuticals and material science.

Limitations

  • i.

    The emphasis on eccentricity-based indices may overlook quantum chemical and steric effects, necessitating hybrid models for more broader applicability.

  • ii.

    This analysis focuses solely on drugs that treat coronary artery disease, limiting generalizability to other classes of drugs.

  • iii.

    Standard environmental prerequisites and simple regression models may not completely catch real-world molecular behavior.

  • iv.

    A small dataset can increase the risk of overfitting in regression models, which makes it essential to utilize regularization strategies.

Future study

  • i.

    Extend datasets to contain various molecular graphs.

  • ii.

    Analyze further properties like pharmacokinetics, solubility, and toxicity.

  • iii.

    Integrate machine learning for improved predict performance.

  • iv.

    Examine real-world applications in advanced material design and drug discovery.

Acknowledgements

The authors extend their appreciation to the Deanship of Research and Graduate Studies at King Khalid University for funding this work through large group Research Project under grant number RGP2/87/46.

Author contributions

Conceptualization: NI, SA, AMA, ZI, AA, KAT; Methodology: NI, SA, ZI; Formal Analysis: SA, AMA, ZI, AA, KAT; Validation: NI, SA,AMA, ZI, AA, KAT; Writing original draft:SA, ZI, KAT; Writing review and editing: NI, SA, AMA, ZI, AA, KAT.

Data availability

All data generated or analysed during this study are included in this published article.

Declarations

Competing interests

The authors declare no competing interests.

Footnotes

Publisher’s note

Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

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Associated Data

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Data Availability Statement

All data generated or analysed during this study are included in this published article.


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