Skip to main content
NCBI home page
Biophysical Journal logoLink to Biophysical Journal
. 1992 Sep;63(3):751–759. doi: 10.1016/S0006-3495(92)81649-1

The nucleic acid database. A comprehensive relational database of three-dimensional structures of nucleic acids.

H M Berman 1, W K Olson 1, D L Beveridge 1, J Westbrook 1, A Gelbin 1, T Demeny 1, S H Hsieh 1, A R Srinivasan 1, B Schneider 1
PMCID: PMC1262208  PMID: 1384741

Full text

PDF
751

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Bernstein F. C., Koetzle T. F., Williams G. J., Meyer E. F., Jr, Brice M. D., Rodgers J. R., Kennard O., Shimanouchi T., Tasumi M. The Protein Data Bank: a computer-based archival file for macromolecular structures. J Mol Biol. 1977 May 25;112(3):535–542. doi: 10.1016/s0022-2836(77)80200-3. [DOI] [PubMed] [Google Scholar]
  2. Bilofsky H. S., Burks C., Fickett J. W., Goad W. B., Lewitter F. I., Rindone W. P., Swindell C. D., Tung C. S. The GenBank genetic sequence databank. Nucleic Acids Res. 1986 Jan 10;14(1):1–4. doi: 10.1093/nar/14.1.1. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Devereux J., Haeberli P., Smithies O. A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res. 1984 Jan 11;12(1 Pt 1):387–395. doi: 10.1093/nar/12.1part1.387. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Dickerson R. E., Drew H. R., Conner B. N., Wing R. M., Fratini A. V., Kopka M. L. The anatomy of A-, B-, and Z-DNA. Science. 1982 Apr 30;216(4545):475–485. doi: 10.1126/science.7071593. [DOI] [PubMed] [Google Scholar]
  5. Grzeskowiak K., Yanagi K., Privé G. G., Dickerson R. E. The structure of B-helical C-G-A-T-C-G-A-T-C-G and comparison with C-C-A-A-C-G-T-T-G-G. The effect of base pair reversals. J Biol Chem. 1991 May 15;266(14):8861–8883. doi: 10.2210/pdb1d23/pdb. [DOI] [PubMed] [Google Scholar]
  6. Hamm G. H., Cameron G. N. The EMBL data library. Nucleic Acids Res. 1986 Jan 10;14(1):5–9. doi: 10.1093/nar/14.1.5. [DOI] [PMC free article] [PubMed] [Google Scholar]
  7. Lavery R., Sklenar H. The definition of generalized helicoidal parameters and of axis curvature for irregular nucleic acids. J Biomol Struct Dyn. 1988 Aug;6(1):63–91. doi: 10.1080/07391102.1988.10506483. [DOI] [PubMed] [Google Scholar]
  8. Ravishanker G., Swaminathan S., Beveridge D. L., Lavery R., Sklenar H. Conformational and helicoidal analysis of 30 PS of molecular dynamics on the d(CGCGAATTCGCG) double helix: "curves", dials and windows. J Biomol Struct Dyn. 1989 Feb;6(4):669–699. doi: 10.1080/07391102.1989.10507729. [DOI] [PubMed] [Google Scholar]
  9. Richardson D. C., Richardson J. S. The kinemage: a tool for scientific communication. Protein Sci. 1992 Jan;1(1):3–9. doi: 10.1002/pro.5560010102. [DOI] [PMC free article] [PubMed] [Google Scholar]
  10. Shakked Z., Rabinovich D. The effect of the base sequence on the fine structure of the DNA double helix. Prog Biophys Mol Biol. 1986;47(3):159–195. doi: 10.1016/0079-6107(86)90013-1. [DOI] [PubMed] [Google Scholar]
  11. Srinivasan A. R., Olson W. K. Yeast tRNAPhe conformation wheels: a novel probe of the monoclinic and orthorhombic models. Nucleic Acids Res. 1980 May 24;8(10):2307–2329. doi: 10.1093/nar/8.10.2307. [DOI] [PMC free article] [PubMed] [Google Scholar]
  12. Westhof E., Dumas P., Moras D. Crystallographic refinement of yeast aspartic acid transfer RNA. J Mol Biol. 1985 Jul 5;184(1):119–145. doi: 10.1016/0022-2836(85)90048-8. [DOI] [PubMed] [Google Scholar]

Articles from Biophysical Journal are provided here courtesy of The Biophysical Society

RESOURCES