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. 2025 Nov 26;2025(11):omaf253. doi: 10.1093/omcr/omaf253

Therapy related myelodysplastic syndrome: a hematologic sequela of low dose methotrexate in rheumatoid arthritis

Ayushi Gupta 1,, Venugopala D 2, Alam Nawaz 3, Vivek Hari 4
PMCID: PMC12698340  PMID: 41395257

Abstract

Introduction

Methotrexate (MTX) is a key drug in rheumatoid arthritis (RA) management but can rarely cause life-threatening hematologic toxicity, including therapy-related myelodysplastic syndrome (t-MDS), even at low doses.

Case Presentation

A 58-year-old male with RA on low-dose MTX (7.5 mg/week) presented with pancytopenia. Evaluation showed Hb 5.7 g/dL, TLC 1300/μL, and platelets 63 000/μL. Nutritional deficiencies, infections, and autoimmune flare were excluded. Bone marrow examination revealed dysplasia with 11% blasts and abnormal precursors, suggestive of t-MDS. MTX and leflunomide were discontinued. He received leucovorin, G-CSF (Granulocyte colony stimulating factor), and supportive care. Rapid hematologic recovery was observed.

Conclusion

This case highlights the potential for low-dose MTX to cause t-MDS, which may be reversible if detected early. As serum MTX levels do not correlate with toxicity, regular blood count monitoring is essential. Prompt drug withdrawal and supportive therapy can lead to full recovery and prevent permanent marrow damage.

Keywords: therapy related myelodysplastic syndrome, low dose methotrexate, rheumatoid arthritis, pancytopenia, leucovorin, filgrastim

Introduction

Rheumatoid arthritis (RA) is a chronic autoimmune disease primarily affecting synovial joints, but it can affect multiple organs in advanced stages. Methotrexate (MTX), remains the first-line Disease modifying anti rheumatic drug (DMARD) due to its effectiveness in controlling inflammation and halting disease progression [1]. Unlike well-documented high-dose MTX (HD-MTX) toxicity in oncology; hematologic toxicity from low-dose MTX (LD-MTX) in autoimmune diseases is underrecognized. LD-MTX can rarely lead to lymphomas and therapy-related myelodysplastic syndrome (t-MDS); manifesting as pancytopenias [2]. t-MDS has worse outcomes than de novo MDS and may result from MTX-induced folate pathway disruption, DNA damage, and clonal hematopoiesis. Risk factors include renal dysfunction, age, folate deficiency, and methylenetetrahydrofolate reductase (MTHFR) polymorphisms. We report a case of low-dose MTX-induced t-MDS in a 58-year-old RA patient.

Case report

A 58-year-old male with a 10-year history of hypertension and RA presented with complaints of fever, cough, generalised weakness, and multiple joint pains since two weeks. He was on methotrexate (MTX) 7.5 mg once weekly, hydroxychloroquine (HCQ) 200 mg twice daily, leflunomide (LEF) 10 mg once daily, folic acid 5 mg once daily for RA and telmisartan for hypertension.

During one of the follow up visits with his physician, the patient was found to have developed pancytopenia (shown in Table 1 as Day −15).

Table 1.

Baseline investigations before presentation to the hospital.

Day − 15 (Before admission)
Haemoglobin (g/dL) 5.7
Haematocrit (%) 18.6
RBC Count (million/cumm) 1.9
TLC (cells/microL) 1300
Platelet count (cells/microL) 63 000

Methotrexate was stopped (on Day −15) due to pancytopenia, while leflunomide and HCQ were continued. He was referred to our hospital for further management.

On arrival, he appeared pale with bilateral knee joints and multiple metacarpophalangeal joints swollen and tender. No lymphadenopathy or palpable abdominal organomegaly. Other systems were within normal limits.

Laboratory investigations revealed pancytopenia (Table 2).

Table 2.

Laboratory investigations on day 1 of admission at our hospital.

Haemoglobin 7.9 g/dl
White blood cell count 1210 cells/μl
Platelet count 70 000 cells/μl
Neutrophils 26%
Lymphocytes 65%
Monocytes 3%
Eosinophils 4%
Basophils 2%
ESR 140 mm/hr
Reticulocyte count 2.1%
LDH 608 IU/L
Peripheral smear examination Leukoerythroblastic anaemia with 6% blast cells

Additional investigations were done to determine the underlying cause of pancytopenia (Table 3).

Table 3.

Additional investigations on day 1 of admission at our hospital.

Vitamin B12 2000 pg/ml
Folic Acid 20 ng/ml
Procalcitonin 0.03 ng/ml
Blood culture No Growth
Urine Culture No Growth
HbsAg Negative
Anti-HCV Negative
HIV 1&2 Ag/Ab Negative
EBV IgM Negative
CMV IgM Negative
Malaria by Peripheral Smear and rapid diagnostic kit Negative
Dengue IgM Negative
Leptospirosis IgM Negative
Widal test Negative
ANA Negative

Vitamin B12 deficiency, sepsis, tropical fevers, and viral infections were ruled out, making secondary infection an unlikely cause of pancytopenia and arthritis flare.

Abdominal ultrasonography revealed mild fatty hepatomegaly, and spleen appeared normal.

In view of the persistent pancytopenia, a bone marrow examination was performed on day 2 of admission.

Bone marrow aspirate revealed dyserythropoiesis with megaloblastoid forms (Fig. 1).

Figure 1.

Figure 1

Bone marrow aspirate showing dyserythropoiesis (star) with megaloblastoid forms (arrows).

Along with multinucleated forms with nuclear bridging and nuclear budding (Figs. 2 and 3).

Figure 2.

Figure 2

Multinucleated forms with nuclear budding (arrow).

Figure 3.

Figure 3

Multinucleated forms with nuclear bridging (arrow).

Granulopoiesis was decreased. Promyelocytes and 11% myeloblasts were also observed.

Bone marrow biopsy was suggestive of hypercellular marrow with sheets of monotonous medium sized cells having pink cytoplasm, rounded nuclei and prominent nucleoli (Fig. 4).

Figure 4.

Figure 4

Hypercellular marrow with sheets of monotonous, medium sized cells- eosinophilic cytoplasm and prominent nucleoli.

Figure 5 shows mature and dysplastic megakaryocytes along with plasma cells, eosinophils, and immature myeloid precursors.

Figure 5.

Figure 5

Mature and dysplastic megakaryocytes (star), plasma cells (arrow facing down), eosinophils, and immature myeloid precursors (arrow facing up).

Histopathological findings were suggestive of Therapy induced Myelodysplastic Syndrome with 11% blast cells.

Flow cytometry and next-generation sequencing (NGS) were not done due to unavailability. Temporal association with methotrexate exposure and MDS development, along with bone marrow findings were highly suggestive of t-MDS over de novo.

Methotrexate withdrawal (from Day −15; prior to admission) was continued and Leflunomide was also withheld (from Day 1 of admission). He was managed with leucovorin (folinic acid) rescue therapy, IV hydration and G-CSF (granulocyte colony stimulating factor) injections.

The patient responded to treatment, and pancytopenia resolved. Follow up CBC values on day 4 showed improvement. (Table 4). Day 7 showed resolution of pancytopenia.

Table 4.

Follow up CBC after stopping MTX (on day −15) and LEF (on day 1).

Day − 15 (Before admission) Day 1 (On admission) Day 4 (After admission) Day 7 (At discharge)
Haemoglobin (g/dL) 5.7 7.9 8.8 10.7
Haematocrit (%) 18.6 24.1 27 34.2
RBC Count (million/cumm) 1.9 1.83 2.68 5.1
TLC (cells/microL) 1300 1210 1740 5100
Platelet count (cells/microL) 63 000 70 000 90 000 1,20 000

The normalization of pancytopenia was utilized as a marker of Methotrexate toxicity resolution. Patient was discharged subsequently on Hydroxychloroquine.

Discussion

About 37% of RA patients will discontinue MTX therapy due to complications. Low-dose toxicity remains largely underreported unlike high dose toxicity [2].

Methotrexate inhibits dihydrofolate reductase, causing folate deficiency which triggers DNA hypomethylation and proto-oncogene activation. t-MDS/AML often involve specific chromosomal deletions and genetic polymorphisms in MTHFR [3].

Though histology shows overlapping features; findings like hypocellular marrow, atypical megakaryocytes, and higher blast counts, favour t-MDS over de novo MDS. Unavailability of flow cytometry and NGS were limiting, however the temporal relationship of MTX use and the onset of myelodysplasia, marrow morphology, and resolution of pancytopenia following drug withdrawal, supported the diagnosis of t-MDS [4].

Paradoxical arthritis flare and raised ESR may stem from pro-inflammatory cytokine release from myeloid cells. Also, immune dysregulation in t-MDS may cause reactivation of RA [5].

There are no specific guidelines for management. Abrupt withdrawal of methotrexate, Leucovorin to reduce myelosuppression and Filgrastim (G-CSF) to aid neutrophil recovery are advised. Combined with leucovorin and MTX withdrawal; filgrastim shows faster, synergistic recovery [1, 6]. Our patient also showed rapid hematologic improvement.

LD-MTX toxicity is idiosyncratic and not dose-dependent, typically occurring despite normal serum drug concentrations [6]. Serum MTX were not checked in our patient due to limited resources and poor correlation between MTX levels and toxicity severity. Recovery from MTX-induced cytopenias usually occurs within 4–7 days following MTX withdrawal and initiation of leucovorin and/or G-CSF.

High-dose MTX requires serum level monitoring at 24,48 and 72 hours to guide leucovorin therapy. In contrast, as per the American College of Rheumatology, LD-MTX requires CBC, LFTs, renal tests and chest X ray at baseline and repeat at every 2–4 weeks during the first 3 months, every 8–12 weeks from 3–6 months, and every 12 weeks thereafter [7].

Leflunomide-related pancytopenia is rare. Hill et al. found only nine cases among 12 700 exposures, mostly with concurrent MTX [8]. Unlike reported LEF-induced marrow aplasia, our patient showed dysplasia and 11% myeloblasts, indicating MDS [9]. Given leflunomide’s prolonged half-life, cholestyramine washout is usually required. Hydroxychloroquine has minimal MDS association with only one reported case of MDS, lacking mechanistic backing [10]. Recovery after MTX withdrawal, without Leflunomide washout and without HCQ cessation, suggests MTX as the cause, with less likelihood of synergistic DMARD toxicity.

Conclusion

Low-dose methotrexate toxicity is underrecognized and can cause therapy-related MDS especially in genetically susceptible individuals. Serum MTX levels don’t predict toxicity; regular CBC and organ function monitoring is key. Prompt MTX cessation, leucovorin, and G-CSF supported rapid hematologic recovery. Vigilance and early detection of pancytopenia is crucial, even with long-term low-dose MTX therapy.

Acknowledgements

The authors gratefully acknowledge Dr. Venugopala D, Department of Medicine, and Dr. Alam Nawaz, Department of Medicine, KMC Mangalore, for their valuable guidance in the diagnostic evaluation and interpretation of haematological findings. We also acknowledge Dr. Ayushi Gupta, Department of Medicine, KMC Mangalore for collecting the data, writing the manuscript, and preparing the tables and figures, revising, and reviewing the manuscript. We also thank Dr. Vivek Hari, Department of Medicine, KMC Mangalore for writing the manuscript, revising, and reviewing the manuscript. All authors reviewed the manuscript.

Non-financial support was provided by the Department of General Medicine, KMC Mangalore, MAHE University in the form of access to clinical facilities and institutional resources.

This case report did not receive any financial support from funding agencies in the public, commercial, or not-for-profit sectors.

Contributor Information

Ayushi Gupta, Department of General Medicine, Kasturba Medical College Mangalore, Manipal Academy of higher education, Manipal, 203, Light House Hill Road, Hampankatta, Mangaluru, Karnataka 575001, India.

Venugopala D, Department of General Medicine, Kasturba Medical College Mangalore, Manipal Academy of higher education, Manipal, 203, Light House Hill Road, Hampankatta, Mangaluru, Karnataka 575001, India.

Alam Nawaz, Department of General Medicine, Kasturba Medical College Mangalore, Manipal Academy of higher education, Manipal, 203, Light House Hill Road, Hampankatta, Mangaluru, Karnataka 575001, India.

Vivek Hari, Department of General Medicine, Kasturba Medical College Mangalore, Manipal Academy of higher education, Manipal, 203, Light House Hill Road, Hampankatta, Mangaluru, Karnataka 575001, India.

Conflict of interest

The authors declare that there are no conflicts of interest related to this case report.

Funding

This case report did not receive any financial support, funds or grants from any funding agencies in the public, commercial, or not-for-profit sectors.

Ethical approval

Ethical approval was not required for this case report.

Patient consent

Written informed consent for publication of the clinical details and clinical images along with laboratory data was obtained from the patient.

Guarantor

Dr. Ayushi Gupta, Department of General Medicine, Kasturba Medical College Mangalore, Manipal Academy of higher education, Manipal is the guarantor of this paper and accepts full responsibility for the integrity of the work.

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