Abstract
Introduction:
Data to guide tuberculosis (TB) preventive treatment (TPT) of close contacts of people with multidrug-resistant tuberculosis (MDR-TB) are limited. While levofloxacin-based TPT has been shown safe and efficacious, alternatives are needed for those exposed to fluoroquinolone-resistant Mycobacterium tuberculosis (M. tb). The PHOENIx trial evaluates whether using a novel nitroimidazole, delamanid, in high-risk household contacts (HHCs) of patients with MDR-TB reduces their risk of developing active TB.
Methods/Design:
PHOENIx is a phase 3, open-label, multicenter clinical trial with a cluster-randomized superiority design (households form the clusters). The study objectives are to compare efficacy and safety of 26 weeks of delamanid versus isoniazid for preventing confirmed or probable TB during 96 weeks of follow-up among HHCs of adults with pulmonary MDR-TB. HHCs are defined as young children <5 years, people living with HIV or non-HIV immunosuppression, or people with evidence of M. tb infection. The study was originally designed to enroll 3,452 HHCs to provide 90% power to detect a 50% reduction in the cumulative proportion of HHCs developing confirmed or probable TB during 96 weeks of follow-up from 5% in the isoniazid arm to 2.5% in the delamanid arm. The design included a sample size re-evaluation to address uncertainty in study design assumptions.
Discussion:
Preventing MDR-TB is a global priority. Alternatives to levofloxacin-based TPT are needed since fluoroquinolone resistance is growing. PHOENIx, a phase 3 trial evaluating delamanid, is poised to inform WHO guidelines.
Keywords: cluster-randomized trial, household contacts, multidrug-resistant tuberculosis, tuberculosis preventive treatment, delamanid
Introduction
Multidrug-resistant tuberculosis (MDR-TB) disease is caused by M. tb bacteria resistant to isoniazid and rifampicin, key drugs in first-line TB treatment. The World Health Organization (WHO) estimated 400,000 new MDR-TB diagnoses globally in 2023[1]. In 2021, 68% of people treated for MDR-TB had successful treatment outcomes[1]. With increased availability of rapid molecular diagnostic tools, the number of new MDR-TB diagnoses is growing, with associated increases in identification of household contacts. Most of these household contacts are likely to become infected with MDR-TB bacteria[2,3,4]; some will progress to active TB disease and possibly die without successful treatment[5,6,7,8,9,10]. Children <5 years, people living with HIV or non-HIV immunosuppression, and people with proof of M. tb infection (TBI) are at higher risk of developing active disease[4,8,11,12,13,14].
Here, we describe the PHOENIx study protocol, a phase 3, open-label, multicenter, cluster-randomized, superiority trial of delamanid (a nitro-dihydro-imidazooxazole derivative mycobacterial cell wall synthesis inhibitor with high potency against M. tb[15]) versus an active control (isoniazid) for prevention of active TB disease in high-risk household contacts (HHCs) of MDR-TB patients. PHOENIx started enrollment in 2019 when WHO guidelines recommended against treating contacts of MDR-TB patients for presumed MDR-TB infection in favor of close monitoring for at least two years and treating those who progressed to disease[14]. Some high-burden countries had guidelines for TPT with isoniazid[16] and either levofloxacin or rifampicin[17] for contacts of MDR-TB patients. In 2018, WHO guidelines conditionally recommended offering TPT to HHCs of MDR-TB patients with documented TBI using drugs tailored to the drug susceptibility pattern of the bacteria causing disease in the index patient[18]. However, given lack of high-quality evidence from randomized trials, WHO also recommended continuation of planned or ongoing randomized trials to provide evidence to inform MDR-TB TPT policy[18].
PHOENIx was designed to evaluate whether delamanid taken orally daily for 26 weeks reduces the risk of developing active TB in HHCs of MDR-TB patients (index participants). Delamanid has been approved by multiple regulatory agencies to treat MDR-TB; WHO issued guidance on its use in treating adults (2020)[19] and children and adolescents (2022)[20]. With potent anti-tuberculous activity, including activity against non-replicating organisms, and a manageable adverse event (AE) profile[21], delamanid was considered suitable for evaluation as TPT. A 26-week TPT duration was based on expecting nearly all index participants to be culture-converted by 6 months[22]. Furthermore, 6 months of isoniazid preventive treatment (IPT) is effective for drug-susceptible TB (DS-TB) contacts[23].
This paper describes key design features of the PHOENIx delamanid TPT trial and a brief discussion of how it will provide needed data for WHO guidelines, especially given recent trials of fluoroquinolone-based TPT in household contacts of people with drug-resistant TB.
Methods
Protocol Team and Sponsors
ACTG A5300B/IMPAACT I2003B Protecting Households On Exposure to Newly Diagnosed Index Multidrug-Resistant Tuberculosis Patients (PHOENIx) is jointly conducted by two clinical trials networks: ACTG (Advancing Clinical Therapies Globally for HIV/AIDS and Other Infections, formerly AIDS Clinical Trials Group) and IMPAACT (International Maternal Pediatric Adolescent AIDS Clinical Trials Network). ACTG and IMPAACT also jointly conducted a feasibility study to support development of this interventional study protocol, including assessment of needed site infrastructure[24,25,26]. PHOENIx is funded by the National Institute of Allergy and Infectious Diseases (NIAID) and the Eunice Kennedy Shriver National Institute of Child Health and Human Development (NICHD). NIAID is the sponsor for regulatory purposes. Otsuka Pharmaceutical Company, Ltd provides delamanid for the study; NIAID purchased isoniazid from Macleods.
Study Objectives
The primary study objectives are to compare efficacy and safety of 26 weeks of delamanid versus isoniazid for preventing confirmed or probable active TB during 96 weeks of follow-up among HHCs of adults with MDR-TB.
Use of an Active Control Arm
Choosing the control intervention was complex. Using a placebo versus an active control was reviewed and included a National Institutes of Health (NIH) ethics consultation. Although a placebo control was reasonable based on WHO guidelines when the trial started, there were several factors suggesting a 26-week IPT control arm might be preferred. First, IPT was low-cost and well-established as beneficial for preventing DS-TB; household contacts living in TB-endemic areas may be infected with DS-TB through community exposure[7]. Second, IPT was recommended for people living with HIV and household contacts <5 years regardless of known exposure to drug-resistant TB and generally initiated well before index patient drug susceptibility results might be available[23,27]. Finally, IPT may be effective in preventing MDR-TB[28]. PHOENIx follow-up is 96 weeks to ensure any benefit in preventing active TB is sustained beyond the TPT administration period as has been shown with IPT for DS-TB in some studies, including those in people living with HIV[29].
Study Setting
Thirty-one sites were included based on their affiliation with the NIH/NIAID/Division of AIDS ACTG and/or IMPAACT networks: 1 site each in Botswana, Brazil, Philippines, Tanzania, and Zimbabwe; 2 sites each in Haiti, India, Kenya, Uganda, and Vietnam; 3 sites each in Peru and Thailand; and 10 sites in South Africa. The sites are in countries with an estimated MDR-TB incidence of >1.5/100,000 people/year (Table 1), of which six are high MDR-TB burden countries[1]. Participating sites had demonstrated capacity to enroll MDR-TB index patients and exposed household contacts in our feasibility study[25].
Table 1.
MDR/RR-TB incidence in countries where the PHOENIx trial enrolled
| Country (Number of PHOENIx Sites) |
Number of MDR/RR-TB Cases (95% Uncertainty Interval)[1] (K=1000) |
Estimated MDR/RR-TB Incidence per 100,000 Population/Year (95% Uncertainty Interval)[1] |
|---|---|---|
| Botswana (1) | 250 (140–370) | 10 (5.6–15) |
| Haiti (2) | 730 (0–1.8K) | 6.3 (0–15) |
| Zimbabwe* (1) | 760 (480–1K) | 4.6 (2.9–6.4) |
| Kenya (2) | 1.2K (570–1.9K) | 2.2 (1–3.5) |
| Uganda (2) | 1.2K (650–1.8K) | 2.5 (1.3–3.6) |
| Tanzania (1) | 1.3K (310–2.3K) | 2 (0.47–3.5) |
| Thailand (3) | 2.9K (1.9K–3.8K) | 4 (2.7–5.3) |
| Brazil (1) | 3.3K (470–6.2K) | 1.6 (0.22–2.9) |
| Peru* (3) | 4.9K (2.9K–6.8K) | 14 (8.7–20) |
| Vietnam* (2) | 9.9K (5.7K–14K) | 9.9 (5.7–14) |
| South Africa* (10) | 13K (7.6K–19K) | 21 (12–30) |
| Philippines* (1) | 29K (9.6K–48K) | 25 (8.4–42) |
| India* (2) | 110K (82K–130K) | 7.4 (5.7–9.1) |
Denotes countries among the 30 high MDR/RR-TB burden countries per WHO [1]
The protocol and informed consent forms were approved by each site’s local institutional review board/ethics committee (IRB/EC) and any other applicable regulatory entity.
Study Population and Eligibility
PHOENIx enrolls both adults with MDR-TB and their HHCs. Restricting to adult MDR-TB index participants was practical; they needed to provide consent for their households to be approached for participation. Table 2 has eligibility criteria.
Table 2.
Eligibility criteria
| Table 2A Index case eligibility criteria |
|---|
| Inclusion criteria |
Individuals must meet the following inclusion criteria for study participation:
|
| Criteria for exclusion from study participation |
Individuals meeting the following exclusion criteria are not eligible for study participation:
|
| Table 2B HHC eligibility criteria |
| Inclusion criteria |
Individuals must meet the following inclusion criteria for study participation. If any member(s) of the household is/are not eligible or do not want to participate, all other eligible high-risk household contacts (HHCs) within the household can still participate.
|
| Criteria for exclusion from study participation |
Individuals meeting the following exclusion criteria are not eligible for study participation:
|
Index participants:
An index participant is an adult (18+ years) with pulmonary MDR-TB who started MDR-TB treatment within the past 90 days and reported at least one other member in his/her household. The index participant must have proof of pulmonary MDR-TB (resistant to at least rifampicin and isoniazid); resistance to fluoroquinolones and/or second-line injectable drugs is allowed.
High-risk household contacts:
An HHC is a person who lives or has lived in the same household (i.e., a dwelling unit or plot of land with shared housekeeping arrangements) as the index participant. The HHC must report exposure to the index participant, sharing over 4 hours of indoor airspace during any 1-week period before the index participant started MDR-TB treatment. High-risk group for HHCs are defined hierarchically.
Children 0 to <5 years
Adults, adolescents, and children ≥5 years who are living with HIV or non-HIV immunosuppression
Adults, adolescents, and children ≥5 years with TBI (i.e., tuberculin skin test reaction ≥5 mm and/or interferon gamma release assay positive)
A key exclusion criterion for HHCs is evidence of active TB, which includes microbiology, chest x-ray abnormalities, and/or clinical sign/symptoms suggestive of TB. The screening process allows up to 70 days to rule out active TB.
Recruitment Process
With their community advisory boards, sites conducted extensive stakeholder engagement and community outreach as trial preparation. Outreach activities included community education/awareness efforts regarding MDR-TB and risk of developing TB after exposure; forging collaborations with local TB programs and hospitals; and preparing standard operating procedures for recruitment, infection control, and trial procedures. Our feasibility study informed these processes[24].
Figure 1 contains the schematic for screening and enrolling index participants and their HHCs. Household enumeration occurs at the household by site personnel working in teams of at least two people, typically at least one female and one male. An adult household member is asked to enumerate all household members and answer questions about their characteristics, including food insecurity. HHC consent s is done individually. Not all eligible HHCs need to participate. Site personnel make up to five attempts to contact potential HHCs absent at the time of initial household visit. Once a potential HHC has been identified, details of the study are carefully discussed. The potential HHC (or, when necessary, the parent or legal representative for HHCs <18 years or under guardianship) is asked to read and sign the approved protocol consent form. If under the age of consent, assent is also obtained according to the local IRB/EC requirements and regulations.
Figure 1.

Study schematic for the trial “Protecting Households on Exposure to Newly Diagnosed Index Multidrug-Resistant Tuberculosis Patients” (A5300B / I2003B/ PHOENIx): a phase 3, open-label, multicenter clinical trial with a cluster-randomized superiority design
Abbreviations: MDR, multi-drug resistant; TB, tuberculosis; HH, household; HHC, high-risk household contact; TBI, TB infection
PHOENIx was anticipated to enroll during 2019–2023. Because of the COVID-19 pandemic and lower-than-anticipated accrual rate, additional sites were added in 2023–2024. Accrual closed in 2025 and follow-up will end in 2027.
Randomization and Treatment Allocation
After an eligible index participant consents to participate and site personnel approach their household, the index participant is enrolled by site personnel using an internet link to the ACTG/IMPAACT Data Management Center’s computerized Subject Enrollment System; the household is randomized to study treatment when the first eligible HHC is enrolled. Site personnel attempt to screen potential HHCs from a household closely together in time and enroll all eligible HHCs before disclosing treatment assignment because a potential HHC might decide not to participate based on the treatment assigned to that specific household. Delaying household randomization until all potential HHCs had been screened would delay TPT initiation, which was considered inappropriate. Delays in HHC enrollment are typically for extensive testing to rule out active TB or because the potential HHC was absent at the time of enumeration. The 1:1 randomization ratio is achieved through permuted blocks and balanced by site, which is expected to help maintain balance in risk factors since the distribution of household size and high-risk group prevalence is expected to vary across sites. Because of household-level randomization, stratification by HHC high-risk group is impossible. There are no restrictions on number of households/site, HHCs/household, and HHCs/high-risk group.
Study Treatment
All enrolled HHCs within a household are assigned the same study treatment once daily for 26 weeks.
Arm A: Delamanid
Arm B: Isoniazid and pyridoxine (Vitamin B6; to prevent isoniazid-related nervous system disorders)
Weight-based dosing is provided in Table 3. Weight-based delamanid doses were modeled using existing adult and pediatric pharmacokinetic (PK) data. The modeled data supported using higher once-daily delamanid doses compared to twice-daily dosing used to treat TB disease. This was an important novel feature of PHOENIx as once-daily TPT is more easily implemented than a twice-daily regimen. PK analyses, explained below, have been developed to determine if the modeled dose reaches acceptable PK targets.
Table 3.
Doses of study medications by body weight
| Weight Band | Children Receiving Dispersible Tablets (5 mg and 25 mg) | Children/Adolescents/Adults Receiving Adult Tablets (50 mg) | ||
|---|---|---|---|---|
| Daily Dose | Number of dispersible tablets to administer orally | Daily Dose | Number of adult tablets to administer orally | |
| 2.5 to <5 kg | 30 mg | 1 × 5 mg AND 1 × 25 mg | n/a | n/a |
| 5 to <8 kg | 30 mg | 1 × 5 mg AND 1 × 25 mg | n/a | n/a |
| 8 to <12kg | 30 mg | 1 × 5 mg AND 1 × 25 mg | n/a | n/a |
| 12 to <16kg | 50 mg | 2 × 25 mg | 50 mg | 1 × 50 mg |
| 16 to <20kg | 50 mg | 2 × 25 mg | 50 mg | 1 × 50 mg |
| 20 to <25kg | 100 mg | 4 × 25 mg | 100 mg | 2 × 50 mg |
| 25 to <30kg | 150 mg | 6 × 25 mg | 150 mg | 3 × 50 mg |
| ≥30 kg (adult) | 200 mg | 8 × 25 mg | 200 mg | 4 × 50 mg |
| Weight Band | Daily Dose | Number of tablets to administer orally |
|---|---|---|
| 2.5 to <6 kg | 50 mg | ½ × 100 mg |
| 6 to <10 kg | 100 mg | 1 × 100 mg |
| 10 to <14 kg | 150 mg | 1 ½ × 100 mg |
| 14 to <20 kg | 200 mg | 2 × 100 mg |
| 20 to <24 kg | 250 mg | 2 ½ × 100 mg |
| ≥24 kg (adult) | 300 mg | 1 × 300 mg |
All study medications are taken orally, seven days per week, throughout the treatment period. The parent/caregiver of a young child administers study medications. HHCs assigned to delamanid are instructed to take it with high-fat food and at least one hour from other medications. Isoniazid can be taken with or without food. To account for missed doses (for any reason), the 26-week course of study treatment must be completed within 34 weeks.
Study treatment is not blinded since an open-label intervention is logistically easier to implement. Site personnel were explicitly asked to not disclose study drug when consulting with the protocol team in order to minimize potential bias.
Adherence to study treatment is encouraged and measured through the widely used, validated Wisepill electronic drug monitoring (EDM) device[30,31,32,33]. It provides a more objective measure of adherence patterns than self-report and offers real-time monitoring of adherence as poor adherence might affect the study’s ability to achieve its objectives. When an HHC does not open the EDM device for 3 out of 7 consecutive days, site personnel intervene by providing adherence support either over the phone or in person (at clinic or home visits). Pill counts, self-reported adherence questionnaires, and sparse PK samples are also being collected.
Primary Outcome Measures
The primary efficacy outcome measure is occurrence of confirmed or probable TB (see Table 4) at any time between study entry and the week-96 study visit.
Table 4.
Definitions of confirmed, probable, and possible pulmonary or extrapulmonary TB
For children ≥15 years old and adults
|
For children <15 years old
|
The primary safety outcome measure is permanent discontinuation of study drug due to treatment-related AEs.
Duration of Follow-Up and Study Evaluations
All index participants and HHCs are followed for 96 weeks; see Table 5 for schedules of evaluations. Index participants provide information supporting their MDR-TB diagnosis at entry (at clinic or home) and updates, particularly TB treatment outcome, at weeks 26 and 96 (abstracted from medical charts). HHC follow-up (at clinic or home) is intensive during the 26-week treatment period (weeks 2, 4, 8, 12, 16, 20, and 26), focusing on evaluations to identify AEs, incident TB, and treatment non-adherence. After week 26, less intensive follow-up (weeks 36, 48, 60, 72, and 96) focuses on identifying incident TB. More frequent measurement of liver function, serum creatinine, and QT intervals were undertaken in the first 500 HHCs enrolled, which was not expanded to the remaining HHCs following safety data review by the study’s independent Data and Safety Monitoring Board (DSMB).
Table 5.
Schedules of evaluations
| Evaluation | Screen | Entry | Post-Entry Evaluations (Weeks) | Premature Study D/C | ||
|---|---|---|---|---|---|---|
| 26 | 96 | |||||
| Visit Window | −90 Days | Day 0 | ±28 Days | |||
| 1 | Identify Potential Index Participant & Obtain Permission to Approach HH | X | ||||
| 2 | Documentation of MDR-TB Status | X | ||||
| 3 | Medical & Medication History | X | ||||
| 4 | Documentation of Chest Imaging | X | ||||
| 5 | Documentation of HIV Status | X | ||||
| 6 | HIV Testing if Not Tested or Previous HIV Test Result Negative (>1 year), Indeterminate, or Unknown | X | ||||
| 7 | Mycobacterial Isolate from the Routine Program TB Lab for Storage & Other Analyses | X1 | X2 | |||
| 8 | Sputum for Mycobacteriology Testing & Storage | X | ||||
| 9 | Chart Extraction for Vital Status, HIV Status, TB Test Results, and Treatment Status | X | X | X | ||
| 10 | Documentation of TB Treatment Outcome | If Indicated | ||||
| Evaluation | Screen A (for ≥5 years old only) | Screen B (for all HHCs) | Entry | Post-Entry Evaluations (Weeks) | Suspected Active TB | Neuropsychiatric Adverse Event | Premature Study D/C | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2 | 4 | 8 | 12 | 16 | 20 | 26 | 36 | 48 | 52–90 (see below for required visit weeks) | 96 | ||||||||
| Visit Window | −30 Days* | Day 0 | ±7 Days | ±4 Days | ±14 Days | |||||||||||||
| Unsafe Conditions ±10 Days | ||||||||||||||||||
| HOUSEHOLD EVALUATIONS | ||||||||||||||||||
| 11 | HH Enumeration & Characteristics & Food Availability Questionnaires | X | ||||||||||||||||
| 12 | HH Follow-up Questionnaire | X | X | |||||||||||||||
| HOUSEHOLD CONTACT EVALUATIONS | ||||||||||||||||||
| 13 | TB Exposure History | X | ||||||||||||||||
| 14 | Medical & Medication History | X | ||||||||||||||||
| 15 | Clinical Assessments | X | X | X | X | X | X | X | X | X | X | 60, 72, 84 | X | X | X | X | ||
| 16 | Targeted Neuropsychiatric Signs & Symptoms | X | X | X | X | X | X | X | X | X | X | |||||||
| 17 | TB Signs or Symptoms | X | X | X | X | X | X | X | X | X | X | X | 60, 72, 84 | X | X | X | ||
| 18 | Height ≥15 Years at Enrollment | X | ||||||||||||||||
| 19 | Height <15 Years at Enrollment | X | X | X | X | X | X | |||||||||||
| 20 | Weight | X (if aged 0–365 days) | X | X | X | X | X | X | X | X | X | X | X | |||||
| 21 | Targeted Physical Exam | X | X | X | X | X | X | X | X | X | X | 60, 72, 84 | X | X | X | X | ||
| 22 | IGRA (Unless Available from Medical Record within 90 Days) | X | a1 | |||||||||||||||
| 23 | TST (Unless Available from Medical Record within 90 Days) | X | a1 | |||||||||||||||
| Note: Both TST and IGRA testing at screening are required for HHCs ≥5 years old unless TST is not available due to global shortages or in-country supply challenges, but only one positive test is required for eligibility. | ||||||||||||||||||
| 24 | Documentation of HIV Status from Medical Records | X | a1 | |||||||||||||||
| 25 | HIV Test if Not Tested or Previous HIV Test Result Negative (>1 year), Indeterminate, or Unknown | X | a1 | If Indicated | X | X | ||||||||||||
| 26 | Plasma HIV-1 RNA Medical Record Abstraction (HIV+ ONLY) | X | ||||||||||||||||
| 27 | CD4+ Count and Percentage Medical Record Abstraction (HIV+ ONLY) | X | ||||||||||||||||
| 28 | CD4+ Count and Percentage (HIV+ ONLY) Unless Available from Record within Last 6 Months | X | ||||||||||||||||
| 29 | Hematology | X | If Indicated | |||||||||||||||
| 30 | Liver Function Tests for at Least First 500 HHCs Enrolled | X | X3 | X3 | X3 | X3 | X3 | X3 | X3 | If Indicated3 | a3 | a3 | a3 | |||||
| 31 | Liver Function Tests after at Least First 500 HHCs Enrolled | X | a3 | X3 | a3 | X3 | a3 | a3 | X3 | If Indicated3 | a3 | a3 | a3 | |||||
| 32 | Blood Chemistries | X | If Indicated | |||||||||||||||
| 33 | Serum Potassium | X | a3 | X3 | a3 | X3 | a3 | a3 | X3 | If Indicated3 | a3 | a3 | ||||||
| 34 | Serum Creatinine for at Least First 500 HHCs Enrolled | X | X3 | X3 | X3 | a3 | X3 | X3 | X3 | If Indicated3 | a3 | |||||||
| 35 | Hemoglobin A1c (≥15 years ONLY) | X | ||||||||||||||||
| 36 | Pregnancy Test | X | If Indicated | |||||||||||||||
| 37 | Respiratory Specimens for Mycobacteriology Testing | If Indicated | X | |||||||||||||||
| 38 | Extrapulmonary Specimens for Mycobacteriology Testing | If Indicated | X | |||||||||||||||
| 39 | Storage of MTB Isolate if Culture Positive for TB | If Indicated | X | |||||||||||||||
| 40 | Chest Radiograph, Chest CT, or Other Imaging Study | X | X | |||||||||||||||
| 41 | ECG for At Least First 500 HHCs Enrolled | X | a2, 3 | X3 | X3 | X3 | X3 | a2, 3 | X3 | If Indicated2, 3 | X If on Treatment | |||||||
| 42 | ECG After At Least First 500 HHCs Enrolled | X | a2, 3 | a2, 3 | X3 | a2, 3 | a2,3 | a2, 3 | X3 | If Indicated2, 3 | X If on Treatment | |||||||
| 43 | Stored Whole Blood in PAXgene RNA Tube | X | X | X | X | |||||||||||||
| 44 | Stored Serum | X | X | X | X | |||||||||||||
| 45 | Plasma and/or Dried Blood Spot for Sparse PK (HHCs on DLM ONLY) | X4 | X4 | X4 | X If on Treatment | X If on Treatment | X If on Treatment | |||||||||||
| 46 | Urine for Sparse PK (HHCs on INH ONLY) | X4 | X4 | X4 | ||||||||||||||
| 47 | DLM Intensive Plasma PK (Birth to <5 Years of Age ONLY) (HIV+ or HIV-) | X4 | ||||||||||||||||
| 48 | Plasma and/or Dried Blood Spot for Sparse PK for Breastfeeding Mothers Whose Child is Participating in Intensive PK Visit (HHCs on DLM ONLY) | X4 | ||||||||||||||||
| 49 | Whole Blood for Pharmacogenetic and Future GWAS Testing | X | ||||||||||||||||
| 50 | Study Treatment Dispensed | X4 | X4 | X4 | X4 | X4 | X4 | a4 | ||||||||||
| 51 | EDM Device Dispensed with Education and Regimen Planning | X4 | ||||||||||||||||
| 52 | EDM Data Feedback & Adherence Counseling | X4 | X4 | X4 | X4 | X4 | X4 | X4 | ||||||||||
| 53 | EDM Functionality Check | X4 | X4 | X4 | X4 | X4 | X4 | a4 | ||||||||||
| 54 | Quantitative Assessment of EDM Acceptability | X | ||||||||||||||||
| 55 | Factors Affecting Adherence Questionnaires | X | ||||||||||||||||
| 56 | Self-Reported Adherence | X4 | X4 | X4 | X4 | X4 | X4 | X4 | ||||||||||
| 57 | Retention Phone Calls | 52, 66, 78, 90 | ||||||||||||||||
| 58 | TB/Vital Status Follow-up (ONLY IF Unable/Unwilling to Have Study Visits) | X | X | X | X | 60, 72, 84 | X | X | ||||||||||
| 59 | Cost and Quality of Life Assessment | X | X | X | X If not done within last 8 wks | |||||||||||||
| 60 | Optimizing and Evaluating the Performance of the EDM Device/RPI | Sites will use Rapid Process Improvement (RPI) methodology to optimize acceptance and operational performance of the EDM device. | ||||||||||||||||
| * = up to 70 days is allowed to rule out active TB | ||||||||||||||||||
| a = if indicated | ||||||||||||||||||
| a1 = to be performed on HHC <5 years old only | ||||||||||||||||||
| If Indicated2/a2: perform if albumin < 3.4 g/dL or Grade ≥1 QTcF on prior visit (QTcF ≥450 ms), and/or participant has palpitations, presyncope, syncope, or chest discomfort. | ||||||||||||||||||
| 3 = for HHCs who do not start study treatment or prematurely discontinue study treatment, only perform if clinically indicated | ||||||||||||||||||
| 4 = do not perform for HHCs who do not start study treatment or prematurely discontinue study treatment | ||||||||||||||||||
Pharmacokinetic Sampling and Interim Analysis in Children <5 Years
All HHCs have sparse PK samples collected at weeks 4, 12, and 26: plasma for delamanid and its metabolite delamanid-6705 and urine for isoniazid’s metabolite, acetylisoniazid. In the first 500 HHCs enrolled, sparse PK samples are analyzed to support DSMB monitoring adherence to study treatment. Thereafter, sparse PK samples are analyzed from a 10% random sample of HHCs. After study completion, a case-cohort analysis will evaluate PK in relation to outcomes of interest (e.g., active TB and AEs).
Intensive delamanid PK sampling is undertaken in 40 children <5 years at a subset of sites with relevant experience, with an interim analysis in the first 20 children to consider a study-wide dose adjustment. Sampling is taken at pre-dose (hour 0), and 2-, 4-, 6-, and 8-hours post-dose. We aim to confirm the initial model-based once-daily delamanid dosing strategy in children.
Run-In Phase for Each Site
A run-in phase assesses the feasibility of implementing delamanid and isoniazid TPT for MDR-TB-exposed HHCs and the quality of study conduct. A site’s run-in phase evaluates data through to when the site’s tenth household has been followed for at least four weeks. There is a formal review by protocol team leadership with recommendations provided to the site if any concerns are identified. Data collected during the run-in phase will contribute to the final analysis.
Suspected New Active TB: Identification and Review
At every visit, HHCs are screened for the following TB signs and symptoms.
Cough, fever, night sweats, involuntary weight loss, sputum production, hemoptysis, chest discomfort, dyspnea, headache or stiff neck that may suggest meningitis
Lymphadenopathy and/or abnormalities on lung examination, such as increased respiratory rate, use of accessory muscles, tracheal deviation, stridor, fremitus, rales, rhonchi, wheezing, pleural rub, or decreased breath sounds
In children, particular attention is paid to any cough (with or without sputum production even if of acute duration), fever, night sweats, lethargy and/or reduced playfulness, altered level of consciousness, enlarged lymph nodes, involuntary weight loss or failure to gain weight, loss of appetite, or convulsions
HHCs suspected of active TB undergo chest radiograph (those in children <15 years are digitized for blinded centralized standardized interpretation by two expert pediatric pulmonologists to support independent TB outcome review) and collection of two respiratory specimens for smear microscopy, Cepheid Xpert® MTB/RIF Ultra or other approved molecular diagnostic testing, culture (MGIT and solid) with species identification, and phenotypic drug susceptibility testing. Sputum induction is used when HHCs cannot produce sputum spontaneously. In children <5 years, appropriate respiratory sample collection methods are used (e.g., gastric aspiration).
An Independent Outcomes Review Committee (IORC) reviews site-identified suspected active TB diagnoses and any others identified in the study database based on signs/symptoms, abnormal or indeterminate chest radiographs, or TB diagnostic tests positive for M. tb. The IORC includes experts in the diagnosis of TB in adults, adolescents, and children and excludes protocol team members and anyone directly involved with the care of study participants. The IORC is blinded to study treatment assignment and site of enrollment. Only confirmed and probable active TB diagnoses (defined in Table 4) as determined by the IORC will be included in the final analysis. The IORC also reviews children according to NIH classification of intrathoracic TB[34] and deaths to assess whether the HHC had undiagnosed TB at the time of death.
Study Oversight
Besides protocol team monitoring (including medical officer review of serious adverse events) and clinical site monitoring contracted by NIAID, an independent NIAID-appointed DSMB provides oversight. The DSMB membership includes clinical trials experts, clinicians knowledgeable about TB in all age groups, and statisticians. The DSMB reviews unmasked safety and efficacy reports prepared by the unblinded protocol statisticians.
Analysis of the Primary Outcome Measures
Estimands for the primary efficacy and safety objectives are provided in Table 6, including details about analysis sets.
Table 6.
Estimands
| Primary Objective 1: To estimate the efficacy of 26 weeks of delamanid versus 26 weeks of isoniazid for preventing confirmed or probable active TB during 96 weeks of follow-up | ||
|---|---|---|
| Estimand description | Ratio comparing delamanid for 26 weeks versus isoniazid and pyridoxine for 26 weeks of the probabilities of confirmed or probable active TB through 96 weeks after initiation of TB preventive therapy among child, adolescent, and adult household contacts of adult MDR-TB patients who are at high risk of developing TB because they are under 5 years of age, HIV-infected, or have latent TB infection | |
| Treatment | Delamanid for 26 weeks versus isoniazid and pyridoxine for 26 weeks | |
| Target population | Analysis set | |
| Child, adolescent, and adult household contacts of adult MDR-TB patients who are at high risk of developing TB because they are under 5 years of age, HIV-infected, or have latent TB infection | All household contacts who are enrolled, irrespective of whether or not they initiate study treatment | |
| Variable | Outcome measure | |
| Confirmed or probable active TB through 96 weeks after initiation of TB preventive therapy | Confirmed or probable active TB at any time between Day 0 and the Week 96 study visit | |
| Handling of intercurrent events | Handling of missing data | |
The following intercurrent events are relevant to the estimand:
|
HHCs who discontinue follow-up before week 96 or who complete 96 weeks of study follow-up without an occurrence of confirmed or probable active TB will have their outcome censored at the date of their last TB symptom screen | |
| Population-level summary measure | Analysis approach | |
| Ratio comparing delamanid for 26 weeks versus isoniazid and pyridoxine for 26 weeks of the probabilities of confirmed or probable active TB through 96 weeks after initiation of TB preventive therapy | Ratio (delamanid to isoniazid) of the Week 96 Kaplan-Meier estimates of the probabilities of confirmed or probable active TB To obtain confidence intervals, the variance of the log10 ratio of probabilities will be calculated using a robust estimator to take account of the cluster randomized design [36]; this method is an extension of Greenwood’s formula to the setting of clustered data Individual times will be calculated as days between Day 0 and the date of the efficacy outcome as determined by the independent outcome review committee or censoring To avoid instability in the Kaplan-Meier estimates at 96 weeks due to variability among HHCs in the timing of week 96 visits, including possible late visits, efficacy outcome and censoring times will be imputed as occurring at exactly 96 weeks (i.e., 672 days) for HHCs having a week 96 visit (or death or lost to follow-up if no prior week 96 visit) within the window in the Schedule of Evaluations in the protocol (i.e., 658–686 days) or by 8 weeks after the scheduled time of exactly 96 weeks (i.e., 658–728 days) Efficacy outcomes and follow-up beyond 728 days will be excluded from the analysis |
|
| Primary Objective 2: To estimate the safety (permanently stopping study treatment due to treatment-related AEs) of 26 weeks of delamanid versus 26 weeks of isoniazid for the treatment of presumed TB infection (TBI) with MDR-TB | ||
| Estimand description | Ratio comparing delamanid for 26 weeks versus isoniazid and pyridoxine for 26 weeks of the probabilities of permanently discontinuing TB preventive therapy due to treatment-related AEs within 26 weeks of initiation among child, adolescent, and adult household contacts of adult MDR-TB patients who are at high risk of developing TB because they are under 5 years of age, HIV-infected, or have latent TB infection | |
| Treatment | Delamanid for 26 weeks versus isoniazid and pyridoxine for 26 weeks | |
| Target population | Analysis set | |
| Child, adolescent, and adult household contacts of adult MDR-TB patients who are at high risk of developing TB because they are under 5 years of age, HIV-infected, or have latent TB infection | All household contacts starting study treatment | |
| Variable | Outcome measure | |
| Permanent discontinuation of TB preventive therapy due to treatment-related AEs within 26 weeks of initiation | Permanent discontinuation of randomized drug (delamanid or isoniazid) due to a treatment-related AE (i.e., requiring discontinuation as defined in Protocol Section 8.0, or in the opinion of the site investigator is a treatment-limiting AE) | |
| Handling of intercurrent events | Handling of missing data | |
The following intercurrent events are relevant to the estimand:
|
HHCs who complete 26 weeks of study follow-up without permanently discontinuing study drug due to treatment-related AEs will have their outcome determined based on data available through Week 26 (i.e., censored at the last known dose of study treatment) | |
| Population-level summary measure | Analysis approach | |
| Ratio comparing delamanid for 26 weeks versus isoniazid and pyridoxine for 26 weeks of the probabilities of permanently discontinuing TB preventive therapy due to treatment-related AEs within 26 weeks of initiation | Ratio (delamanid to isoniazid) of the Week 26 Kaplan-Meier estimates of the probabilities of permanently discontinuing TB preventive therapy due to treatment-related AEs To obtain confidence intervals, the variance of the log ratio of probabilities will be calculated using a robust estimator to take account of the cluster randomized design [36]; this method is an extension of Greenwood’s formula to the setting of clustered data Individual times will be calculated as days between Day 0 and the date of the safety outcome or censoring To avoid instability in the Kaplan-Meier estimates at 26 weeks due to variability among HHCs in the timing of the week-26 visits, safety outcome and censoring times falling within 161 and 216 days will be imputed as occurring at exactly 26 weeks (i.e., 182 days) Safety outcomes and follow-up beyond 216 days will be excluded from the analysis |
|
The primary efficacy analysis will use Kaplan-Meier estimates of the cumulative proportion of HHCs developing confirmed or probable active TB during 96 weeks of follow-up. HHCs who do not develop confirmed or probable active TB will be censored at their last TB symptom screening. The ratio of cumulative proportions of HHCs with active TB will be used to estimate efficacy of TPT with 26 weeks of delamanid versus isoniazid. Estimation of the ratio is on the log scale with an estimated 95% confidence interval calculated using a robust estimator of the variance to account for the cluster-randomized design[35].
The primary safety analysis is similar but examines cumulative proportion of HHCs permanently stopping study drug due to treatment-related AEs during 26 weeks of study treatment. Follow-up of HHCs who permanently stop study drug for reasons other than treatment-related AEs will be censored at their study treatment discontinuation date.
Sample Size Assumptions
The sample size of 3452 HHCs was chosen to provide 90% power to detect a 50% relative reduction in the cumulative proportion of HHCs developing confirmed or probable TB during 96 weeks of follow-up from 5% for isoniazid to 2.5% for delamanid using a two-sided test with a Type I error rate of 5%. The calculations assumed up to 15% loss to follow-up (LFU) and for interim monitoring using Haybittle-Peto stopping boundaries, with the sample size inflated by 1%. Allowance for the cluster-randomized design (versus an individually randomized design) incorporated information about the anticipated mean (m=2) and coefficient of variation (CV=0.6667) for the number of HHCs/household, and the intra-cluster correlation (ICC=0.15; AC Hesseling, personal communication[36])[37]. Instead of using the variance inflation factor (VIF; 1+ [m−1] × ICC) for when each cluster (household) has the same number of individuals, we used (1+ [m × (1+CV2) − 1] × ICC). Since the assumed ICC is positive, the sample size is larger than if we enrolled independent individuals. Since CV2 is positive, the sample size is again larger than if each cluster contained the same number of individuals.
Because there was a reasonable level of uncertainty in some assumptions underlying the sample size calculation, the study design included a formal sample size re-evaluation at about 1.5 years before the proposed sample size was expected to be accrued. This was done by a statistician blinded to outcome results to preserve trial integrity, focusing on the assumed LFU rate and factors affecting the VIF. The DSMB recommended incorporating the rate of active TB in the isoniazid arm (without knowing the rate in the delamanid arm) into a second re-evaluation consistent with the Food and Drug Administration (FDA) Guidance for adaptive designs[38].
The blinded sample size re-evaluation was based on study estimates of TB incidence in the isoniazid arm, LFU, mean and CV for number of HHCs/household, and ICC. The revised sample size requires 3834 HHCs to be enrolled, which provides 80% power to detect a 50% relative reduction in confirmed or probable active TB for delamanid versus isoniazid. The decision to require 80% power reflected cost considerations and, more importantly, the evolving trial landscape with trials of levofloxacin demonstrating efficacy for TPT and attendant changes in WHO guidelines[39].
Dissemination of Trial Findings
Upon completion of the trial, the protocol team will share results at conferences and publish results in peer-reviewed journals in accordance with the Consolidated Standards of Reporting Trials (CONSORT) statement’s extension to cluster-randomized trials[40,41]. A summary of study results will be disseminated to investigators and participants before public presentation of results.
Discussion
TB is again the leading cause of death due to a single infectious agent[1]. In 2023, there were 10,800,000 TB diagnoses, of which 400,000 were due to MDR- or rifampicin-resistant (RR)-TB[1]. MDR/RR-TB is associated with worse treatment outcomes, increased risk of death, and more household-level catastrophic costs compared to DS-TB. While treatment outcomes for MDR-/RR-TB have improved in recent years, 32% of patients still have unfavorable outcomes; over 80% of households face catastrophic costs. Furthermore, an estimated 19,100,000 persons have been exposed to MDR-TB and have MDR-TBI[42]. Thus, preventing MDR/RR-TB remains a global priority.
WHO has called for randomized clinical trials with newer agents with good sterilization properties[23]. These trials need to be adequately powered and include high-risk populations such as contacts of people with MDR/RR-TB, especially children and PLWH[23]. In 2016, two trials of levofloxacin, a third-generation fluoroquinolone with good efficacy against M. tb in vitro and a core component of MDR-TB treatments for active disease, were initiated: TB-CHAMP (ISRCTN92634082) in South Africa and V-QUIN (ACTRN12616000215426) in Vietnam. These trials completed follow-up in 2023; pooled results published in December 2024 showed a 60% relative reduction in TB incidence[43,44,45]. In 2024, updated WHO guidelines made strong recommendations for levofloxacin as TPT for contacts of MDR/RR-TB[23,39]. While these results are exciting and provide robust new evidence for levofloxacin as TPT for MDR-TBI, there are important considerations and rationale for evidence to support alternatives to levofloxacin for managing MDR/RR-TB exposure. First, an estimated 18% of MDR/RR-TB patients are resistant to fluoroquinolones; levofloxacin would not be expected to be efficacious in these patients[1]. Furthermore, in some regions of the world, fluoroquinolone resistance is growing[46]. For example, India has the most MDR-TB diagnoses and has extensively used fluoroquinolones for the last decade; prevalence of fluoroquinolone-resistant TB is now 24%–33% or higher in several regions[23,47,48].
Levofloxacin and the fluoroquinolone class are critical oral antibiotics used for other clinical indications (e.g., pneumonia, urinary tract infections, and diarrheal diseases). There is concern widespread fluoroquinolone-based TPT could increase resistance to this class of drugs, rendering them less effective for treatment or prevention of MDR-TB and other more common bacterial infections[46,48]. Lastly, while fluoroquinolone TPT trials showed a 60% relative reduction in TB incidence, an increased risk of musculoskeletal events was also observed[45]. Assessing additional TPT regimens with good sterilizing properties, such as delamanid, is still very much needed.
While the protocol included multiple exclusion criteria for HHCs (Table 2B), many are required in a clinical trial involving an investigational drug. For routine TPT administration, WHO recommends exclusion of active TB in exposed household or close contacts and alignment of TPT with the drug susceptibility profile of the index patient with MDR/RR-TB [23,49].
Several difficult design decisions were made. Using an active control was based on the NIH ethics consultation recommendation given data showing potential benefit with IPT even for MDR-TB exposure and other data showing not all incident TB among exposed contacts is drug-resistant. The selected duration of exposure to index patients was based on review of programmatic guidelines and other TPT trials and a survey from our site investigators. A common definition was practical and feasible to implement: the contact had to have recent exposure within 90 days before the index patient started MDR-TB therapy. The decision to evaluate TPT in high-risk contacts of all ages was based on the recommendation at the time PHOENIx was being designed of TPT for children <5, people living with HIV, and those with evidence of TBI. We also showed in our feasibility study[50] that these were the HHCs at greatest risk of developing TB.
In summary, PHOENIx is a well-powered phase 3 registrational cluster-randomized clinical trial examining delamanid, a mycobacterial cell wall synthesis inhibitor with high potency against M. tb that is being used in newer MDR-TB regimens[15], in adult, adolescent, and child HHCs of adult MDR-TB patients and is poised to inform WHO guidelines. A dispersible formulation was approved by European Medicines Authority for children weighing ≥10 kg. Additional work has shown sugar or sugar-free suspensions can be stored at room temperature for 15 days or 30°C for 30 days, respectively[51]. Delamanid is a promising new agent to prevent MDR-TB and, if shown to be efficacious, will provide an alternative to levofloxacin in those intolerant or exposed to fluoroquinolone-resistant M tb.
Acknowledgments
We gratefully acknowledge Peter S Kim, director of the NIAID DAIDS Therapeutics Research Program; K Rivet Amico, Richard E Chaisson, and Sharon A Nachman, Protocol Investigators; Anne-Marie Demers, Protocol Microbiologist; Kelly E Dooley; Protocol Pharmacologist; Rohan Hazra, NICHD Medical Officer; Roxana Rustomjee and Betsy Smith, NIAID DAIDS Clinical Representatives; Eric Nuermberger, Consulting Investigator; Laura J Hovind, Protocol Laboratory Data Manager; Lara A Hosey, Protocol Clinical Trials Specialist; and Ronald Ssenyonga, Community Scientific Subcommittee member of the ACTG Global Community Advisory Board Committee for their contributions to PHOENIx protocol development.
Funding
This work was supported by the National Institute of Allergy and Infectious Diseases (NIAID) under Award Numbers UM1 AI068634, UM1 AI068636, UM1 AI106701, UM1 AI068616, UM1 AI068632, and UM1 AI106716 with co-funding from the Eunice Kennedy Shriver National Institute of Child Health and Human Development (NICHD) under Contract Number HHSN275201800001I. NSS was supported by NIAID Award Numbers K24 AI65099 and P30 AI168386. AG was also supported by NIAID Award Number UM1 AI069465. The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institutes of Health (NIH).
Footnotes
ClinicalTrials.gov Identifier: NCT03568383
Data Availability
No data were used for the research described in the article.
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Data Availability Statement
No data were used for the research described in the article.
