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. 2025 Dec 17;20(12):e0332655. doi: 10.1371/journal.pone.0332655

The evaluation of indoxyl sulfate in the general population in Kanegasaki Iwate: A cross-sectional study (KANEGASAKI study)

Mizuki Hisano 1, Takaya Abe 1,*, Kie Sekiguchi 1, Eri Hakozaki 2, Fumiaki Takahashi 3, Kozo Tanno 4, Toshikazu Abe 2, Kenichi Takeuchi 5, Toru Maruyama 6, Ryo Takata 1, Wataru Obara 1
Editor: Tatsuo Shimosawa7
PMCID: PMC12711065  PMID: 41406112

Abstract

Chronic kidney disease (CKD) significantly impacts global health. Renal function is evaluated using urinary albumin–creatinine ratio (U-Alb/Cr ratio) and estimated glomerular filtration rate (eGFR). However, these parameters reflect the damage that has already occurred, limiting their utility for early detection. Therefore, novel biomarkers that can detect CKD before functional decline are urgently needed. Kidney fibrosis is an important pathologic feature of CKD and precedes functional impairment, highlighting its potential as an early indicator of CKD. Indoxyl sulfate (IS), a gut-derived uremic toxin, promotes kidney fibrosis and accelerates CKD progression, highlighting its strong potential as a biomarker for early CKD detection. As most studies on IS focused on the state of impaired renal function, the trend of IS in early-stage or preclinical CKD is unclear. Furthermore, quantifying IS in clinical practice is problematic because it’s primarily measured through high-performance liquid chromatography. A recently developed enzyme method has simplified large-scale IS measurement. Identifying the associated factor with IS, we measured serum IS using enzyme method. We analyzed 674 participants who received specific health checkups and had an eGFR of ≥60 mL/min/1.73 m2 (non-CKD) after obtaining their consent. In addition to standard examinations, we measured serum IS and administered a questionnaire about the frequency of defecating conditions. In this study, we investigated the level of the serum IS in association with the background characteristics of non-CKD participants. For the first time in this study, the median serum IS level was 3.7 (interquartile range, 2.7–5.0) µmol/L in individuals with non-CKD participants, and the linear regression analysis revealed that serum IS was significantly correlated with age, eGFR, and constipation. These findings suggest that IS accumulation begins before overt renal dysfunction, supporting its potential as an early biomarker for CKD. Although further longitudinal studies are warranted, our results highlight the clinical relevance of IS in the early detection and intervention of CKD.

Introduction

In 2017, the estimated prevalence of chronic kidney disease (CKD) was 9.1% worldwide, which was approximately 30% higher than in 1990. The estimated number of deaths was 120 million, with cardiovascular disease-related deaths exceeding 140 million [1]. In addition, a previous study using a simulation model reported that approximately 50% of non-CKD subjects may develop CKD [2]. Thus, it is anticipated that CKD will significantly impact global health. Estimated glomerular filtration rate (eGFR) and urinary albumin levels are used to evaluate and estimate renal function prognosis. However, these are insufficient for the early detection of CKD and selection of high-risk CKD cases because they indicate the result of kidney injury [3]. Therefore, it is necessary to develop new markers to detect CKD; currently, no biomarker exists for this condition [4,5]. Fibrosis is a pathological feature of CKD that leads to chronic organ damage [6]. Several studies have been conducted to assess potential novel biomarkers for kidney fibrosis; however, no biomarker is being used in clinical practice. Therefore, using a combination of biomarkers may be better than a single biomarker for renal function assessment [7]. Indoxyl sulfate (IS) leads to kidney fibrosis by activating mechanistic/mammalian targets of rapamycin complex one and nuclear factor-kappa B [8,9], and promotes kidney failure [10,11]. Reduction in IS accumulation suppresses kidney fibrosis [12,13]. Given this mechanism, it is anticipated that IS can be used as a biomarker for the early detection of CKD [14]. When disease-specific conditions damage the kidney, decreased glomerular filtration occurs due to the reduced number of functioning nephrons. A decrease in glomerular filtration leads to reduced IS excretion and higher IS levels in the blood. Higher IS causes excessive stress on the remaining nephrons, resulting in glomerulosclerosis and tubulointerstitial damage, which place additional strain on the remaining nephrons. The resulting decline in renal function leads to the further accumulation of IS, which in turn worsens the decline in renal function. Thus, a vicious cycle of progressive kidney damage is established, and IS promotes kidney failure [10]. However, the dynamics of IS in the kidney’s preinjury (normal renal function) period remain unclear. The instantaneous measurement of IS and its application in clinical practice are difficult as IS is measured using high-performance liquid chromatography (HPLC) [15]. Furthermore, most previous studies on IS have focused on patients with impaired renal function; only a few studies have focused on patients with undamaged renal function [10,1619]. An enzymatic assay kit has been recently developed as an effective approach to measure IS levels. An automated clinical chemistry analyzer can measure IS in 10 minutes. The IS values measured using this kit positively correlated with HPLC results (r = 0.933) [20]. This kit has also been validated for measuring various inhibitors in hemodialysis patients [21] and is expected to be used for the large-scale measurement of IS.

In this study, the enzyme method was used to measure IS on a large scale and to investigate IS and factors associated with IS in a general population with undamaged renal function, i.e., having an eGFR of ≥60 mL/min/1.73 m2.

Materials and methods

Study setting and participants

This study underwent from 01-06-2022 to 31-10-2022. The KDIGO guideline defines abnormal renal function as an eGFR of <60 mL/min/1.73 m2 [22]. The main purpose of the present study was to assess serum IS in subjects with normal kidney function, defined as an eGFR of ≥60 mL/min/1.73 m2, and to clarify factors affecting serum IS levels. In the participants in this study, normal renal function was defined as an eGFR of ≥60 mL/min/1.73 m2. A questionnaire was administered to record the following data: age, sex, hypertension, diabetes, smoking history, and constipation. Moreover, the height, weight, body mass index, and systolic blood pressure of the participants were measured, and blood tests (HbA1c, creatinine [Cr], eGFR, and IS) and urine tests (albumin, Na, and Cr) were conducted. The Tanaka formula was used to estimate daily salt intake using spot urine samples [23]. Of note, the Tanaka formula was used in several research studies [2326].

Estimated daily salt intake (g/day)=(21.98·(Spot urine NaSpot urine Cr·110)·((Body weight·14.89)[10pt]                                                  +(Height·16.14)(Age·2.04)2244.45))·0.39217

An enzyme-based assay determines serum Cr levels, whereas the Japanese estimated GFR formula calculates eGFR [27]. Of note, this formula was used in several research studies [2830].

eGFR in males (mL/min/1.73 m2m2)=194×Cr1.094×Age0.287\]
eGFR in females (mL/min/1.73 m2)=194×Cr1.094×Age0.287×0.739\]

Serum IS was measured using an enzyme method [20]. The IS Assay Kit “NIPRO” (NIPRO Corporation, Osaka, Japan), which contains a reagent to measure total (free and albumin-bound) IS through the enzyme-based method, was used. The measurement principle of this reagent in the enzyme method is as follows: sulfatase converts IS to indoxyl. The generated indoxyl reacts with tetrazolium salt and produces the dye formazan. Formazan formation is measured by checking the absorbance at 450 nm, directly proportional to IS concentration. The total IS concentration is calculated by checking the absorbance at 450 nm of the standard IS solution that the manufacturer supplied. The enzyme method was developed to measure serum IS levels using a biochemical analyzer while measuring factors such as Cr. In this study, hypertension and diabetes were defined only by these measurements, and it was not considered whether the participants took medication for these conditions. In this study, hypertension was defined as a systolic blood pressure of more than 140 mmHg, the average of twice the systolic blood pressure measurement, and diabetes mellitus as more than 6.5% of HbA1c levels. Based on a previous report, a questionnaire was used to determine the frequency of defecation as follows: more than once a day, once every 2–3 days, once every 4–5 days, less than once every 6 days [31]. In the present study, we used this multiple-choice questionnaire, and constipation was defined as at most once every 2 days. The participants were categorized into the non-constipation group, defined as those with defecation more than once a day (≥1 time/day), or the constipation group, defined as those with defecation at most once every 2 days (≤1 time/2days).

The relationship between serum IS and other clinical factors was considered to determine the utility of measuring serum IS.

Statistical analysis

Data on background characteristics influencing serum IS levels were presented using medians with interquartile ranges or percentages. The serum IS levels were not normally distributed; therefore, serum IS levels were logarithmically transformed to achieve a normal distribution. Other items weren’t normal distribution too. These items were analyzed using Mann-Whitney U test, and Pearson χ2 test. Linear regression analysis was performed to evaluate the effect of covariates on serum IS. Linear regression analysis included nine covariates: age, eGFR, estimated salt intake, urinary albumin–creatinine ratio (U-Alb/Cr), sex, prevalence of hypertension, prevalence of diabetes, smoking history, and constipation. The regression model did not include Cr because of the collinearity between Cr and eGFR. Body mass index (BMI) was not included in the model, because BMI may differ from traditional health standards in elderly individuals whereas the present study included participants with a wide age range [32]. All statistical analyses were performed using EZR Ver1.64 (Saitama Medical Center, Jichi Medical University, Saitama, Japan). EZR (The R Foundation for Statistical Computing, Vienna, Austria) [33] is a statistical program that extends the functionality of R or R Commander. Statistical significance was defined as a P-value below 0.05.

Ethical statement

This study was approved by the ethical committee of The Iwate Medical University School of Medicine (MH2021−181). This was an observational study, and participants who agreed to participate by signing written consent forms were enrolled.

Results

Serum IS concentration

Fig 1 shows the flow chart of participant enrollment. In total, 1102 subjects aged 40–74 years underwent a specific health checkup in Kanegasaki Town, Iwate Prefecture, in June 2022. Of these, 226 subjects did not consent to participate in the present study and 202 participants were excluded because of kidney dysfunction, based on an eGFR of <60 mL/min/1.73 m2). After excluding these participants, 674 participants were finally included in this study.

Fig 1. Flowchart of selection.

Fig 1

A total of 1,102 subjects underwent a specific health checkup. Of these, 226 subjects who did not consent to participate in the study and 202 subjects with impaired renal function were excluded. Consequently, 674 participants were included in the study.

Table 1 summarizes the participants’ characteristics. Male accounted for 47.2% (n = 318) of the total participants, with a median age of 68.0 (IQR: 63.0–71.0) years. The prevalence rates of hypertension and diabetes were 28.0 (n = 189) and 8.8% (n = 59), respectively.

Table 1. Characteristics of the participants.

Male Female p-value
(n = 318) (n = 356)
Median Quartile range Median Quartile range
Age (year) 68 62.0–71.0 67 63.0–71.0 0.597
Cr (mg/dL) 0.82 0.75–0.89 0.62 0.57–0.67 <0.001
eGFR (mL/min/1.73 m2) 72.9 67.1–79.9 72.4 67.3–79.6 0.812
BMI (kg/m2) 23.5 21.5–25.9 22.4 20.2–24.8 <0.001
Estimated volume of salt intake (g/day) 9.4 8.0–11.1 9.2 7.9–10.7 0.123
IS (μmol/L) 3.9 2.6–5.4 3.7 2.8–4.8 0.107
Urinary albumin–creatinine ratio (mg/gCr) 8.8 4.7–16.9 12.8 7.4–23.6 <0.001
Case % Case %
Prevalence of hypertension n(%) 86 27.0 103 28.9 0.687
Prevalence of diabetes mellitus n(%) 31 9.7 28 7.9 0.415
History of smoking n(%) 99 31.1 22 3.2 <0.001
Prevalence of constipation n(%) 50 15.7 97 27.2 <0.001

The table shows the characteristics of all participants, males, and females. The median age of all participants was 68.0 years and serum IS level was 3.7 μmol/L. Serum Cr, BMI, smoking rate, and urine albumin–creatinine ratio significantly differed between males and females.

eGFR: estimated glomerular filtration rate, BMI: body mass index, IS: indoxyl sulfate

Approximately 18.0% (n = 121) of the study participants smoked. The median serum Cr concentration, eGFR, U-Alb/Cr ratio, and estimated daily salt intake were 0.69 (IQR: 0.62–0.81) mg/dl, 72.5 (IQR: 67.2–79.7) mL/min/1.73 m2, 10.6 (IQR: 6.1–19.1) mg/gCr, and 9.3 (IQR: 7.9–10.9) g/day, respectively. The prevalence of constipation was 21.8% (n = 147) of the participants.

Serum Cr, BMI, and smoking rate were all significantly higher in male than in female. Conversely, female had a significantly higher U-Alb/Cr ratio than male (Table 1).

The median IS level in the participants was 3.7 (IQR: 2.7–5.0) μmol/L, with males having an IS level of 3.9 (IQR: 2.6–5.4) μmol/L and females having an IS level of 3.7 (IQR: 2.8–4.8) μmol/L (Fig 2). The Q-Q plot of the serum IS levels indicated a non-normal distribution whereas the Q-Q plot of the logarithmically transformed IS levels indicated a normal distribution. There was no significant difference between males and females in terms of IS levels. There was also no difference in the prevalence of hypertension, prevalence of diabetes mellitus, and smoking history between males and females (Table 1). Age, Cr, eGFR, and prevalence of constipation were significant differences in characteristics of the participants between the groups with IS above the median and those with IS below the median (S1 Table). Significant differences were observed in serum IS levels between constipation group and non-constipation group. (S2 Table). No significant differences were observed in serum IS levels between groups with and without hypertension, diabetes mellitus, or smoking (S3S5 Tables).

Fig 2. Serum IS concentration.

Fig 2

The median IS level in all participants was 3.7 (IQR: 2.7–5.0) μmol/L, with males having an IS level of 3.9 (IQR: 2.6–5.4) μmol/L and females having an IS level of 3.7 (IQR: 2.8–4.8) μmol/L.

With serum IS concentration as the objective variable, linear regression analysis was performed with the following nine explanatory variables: age, eGFR, estimated salt intake, U-Alb/Cr, sex, prevalence of hypertension, prevalence of diabetes, smoking history, and prevalence of constipation. Age, constipation, and eGFR were significantly correlated with serum IS concentration. The serum IS value increased with age and constipation but decreased with eGFR (Table 2).

Table 2. Linear regression analysis of IS vs nine items.

(n = 674)
Regression coefficient estimates 95% confidence interval p-value
Age 0.006 0.002, 0.011 0.008
eGFR −0.004 −0.007, −0.001 0.022
Estimated volume of salt intake 0.005 −0.011, 0.022 0.528
Urinary albumin–creatinine ratio 0.0002 −0.0001, 0.0007 0.164
Male sex 0.076 −0.001, 0.153 0.061
Prevalence of hypertension 0.014 −0.067, 0.096 0.722
Prevalence of diabetes mellitus 0.082 −0.046, 0.210 0.208
History of smoking −0.017 −0.119, 0.085 0.744
Prevalence of constipation 0.162 0.075, 0.250 0.002

With serum IS concentration as the objective variable, linear regression analysis was performed on nine explanatory variables: age, eGFR, estimated salt intake, U-Alb/Cr, sex, prevalence of hypertension, prevalence of diabetes, smoking history, and prevalence of constipation.

eGFR: estimated glomerular filtration rate

Discussion

The IS level of general population which their renal function was normal, defined as an eGFR of ≥60 mL/min/1.73 m2 was 3.70 (IQR: 2.7–5.0) µmol/L (Fig 2). This level was the same as in previous reports [8,1719]. In Japan, the prevalence rates of hypertension and diabetes were 30.6% [34] and 11.68% [35], respectively. Moreover, the rates of smoking history and estimated salt intake were 16.7% [36] and 9.95 ± 3.2 g [37], respectively. These were similar as our findings.

Previous studies reported that serum IS levels increased in parallel with the decline in renal function in patients with CKD. However, the dynamics of serum IS levels in individuals with normal renal function were unclear. In the present study, serum IS levels were measured in a large cohort, revealing that serum IS was also associated with eGFR in individuals with normal renal function, which was defined as an eGFR of ≥60 mL/min/1.73 m2. Many biomarkers are thought to be useful in the early detection of CKD. However, these substances appear after an organ injury, for which there is no reliable marker [5,38]. Conversely, IS is a substance that causes kidney damage. The renal tubular cells’ organic anion transporter (OAT1/3) and organic anion transporting polypeptide carry IS into the cell, thereby inducing oxidative stress and inflammatory cytokines through reactive oxygen species production [39,40]. IS also leads to the production of transforming growth factor-β by activating the renin–angiotensin aldosterone system, thereby causing kidney fibration [41]. Kidney fibrosis is an important biomarker for the early detection of CKD [6]. So, IS has the potential to act as an early detection marker. Furthermore, the gut microbiota outperforms the urine protein creatine ratio in detecting CKD [42]. This is because indole, a precursor of IS, is produced by the gut microbiota and may reflect changes in the gut microbiota. Although our study does not conclusively demonstrate the role of serum IS as an early biomarker of CKD, the longitudinal follow-up of the study participants long-term will evaluate this potential.

In this study, serum IS increased with age (Table 2), consistent with previous findings [18,19]. Aging-related changes in gut microbiota promote the conversion of tryptophan to indole [43,44].

Interestingly, constipation was also found to influence serum IS concentration (Table 2). Prolonged intestinal content transit time also increases the absorption of substances derived from the intestinal flora. Constipation affects the concentration of tryptophan metabolites in patients with CKD [45]. Moreover, the conversion rate to CKD and ESRD risk are higher in non-CKD patients with constipation than in those without constipation, and there is a correlation between the severity of constipation and the rate of eGFR decline [46]. Gut microflora produces several substances, with recent attention focused on the gut–cardio–renal axis [47], gut–immune–kidney axis [48], and brain–gut–kidney axis [49]. So, from the gut microbiota perspective, organ linkage should be considered using IS [50,51].

This study had some limitations: IS was measured as total IS rather than free IS, presence of potential bias in the racial population, protein intake from diet and gut microbiota was ignored, antimicrobial use was ignored, seasonal variability was ignored, eGFR was used to assess renal function, and this was a cross-sectional study that did not examine trends in renal function over time. Furthermore, many factors, such as PCS, contribute to kidney fibrosis (decreased renal function), and we did not consider these factors. Further research with many cases is warranted to examine the correlation of IS with precise renal function evaluation, investigate the relationship with gut microflora, and conduct prospective cohort studies on the impact of IS on renal function. In previous studies, the HPLC method was used to measure serum IS; however, measuring serum IS in real time is difficult because this method uses a dedicated machine with manual operation. On the other hand, the enzyme method can be performed in approximately 10 minutes on an automated biochemistry analyzer, making it easier to use in clinical practice. However, further comparison with conventional HPLC methods and clinical studies are needed. These aspects suggest that serum IS might detect CKD earlier than eGFR, which could not be evaluated in the present cross-sectional study and should be explored in future studies.

In the future, it will be necessary to predict the prognosis of CKD better and look for biomarkers that can help improve it.

Conclusions

Serum IS was measured using an enzyme method in the general population with an eGFR of ≥60mL/min/1.73 m2. The median serum IS level was 3.7 μmol/L in the general population. Age, eGFR, and constipation affected serum IS levels. Further research is needed to validate the potential of serum IS as a reliable biomarker.

Supporting information

S1 Table. Comparison of the participants with low and high IS levels. eGFR: estimated glomerular filtration rate, BMI: body mass index, IS: indoxyl sulfate.

(PPTX)

pone.0332655.s001.pptx (57.2KB, pptx)
S2 Table. Comparison of the participants with and without constipation. eGFR: estimated glomerular filtration rate, BMI: body mass index, IS: indoxyl sulfate.

(PPTX)

pone.0332655.s002.pptx (56.5KB, pptx)
S3 Table. Comparison of the participants with and without hypertension. eGFR: estimated glomerular filtration rate, BMI: body mass index, IS: indoxyl sulfate.

(PPTX)

pone.0332655.s003.pptx (57KB, pptx)
S4 Table. Comparison of the participants with and without diabetes mellitus. eGFR: estimated glomerular filtration rate, BMI: body mass index, IS: indoxyl sulfate.

(PPTX)

pone.0332655.s004.pptx (57.3KB, pptx)
S5 Table. Comparison of the participants with and without smoking history. eGFR: estimated glomerular filtration rate, BMI: body mass index, IS: indoxyl sulfate.

(PPTX)

pone.0332655.s005.pptx (56.9KB, pptx)
S1 Data. Anonymized data files required to reproduce the analysis – original data.

(CSV)

pone.0332655.s006.CSV (96.5KB, CSV)

Acknowledgments

We received technical advice from Kenta Tatsumi (Nipro Corporation).

Data Availability

All relevant data are within the manuscript and its Supporting Information files.

Funding Statement

The author(s) received no specific funding for this work.

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Decision Letter 0

Tatsuo Shimosawa

24 Sep 2025

Dear Dr. Hisano,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process.

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Additional Editor Comments:

Four experts raised several serious issues and some minor points. Please provide us revision and explain the rationale for statistical analysis and data variations.

Reviewers' comments:

Comments to the Author

1. Is the manuscript technically sound, and do the data support the conclusions?

Reviewer #1: Yes

Reviewer #2: No

Reviewer #3: Yes

Reviewer #4: Yes

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2. Has the statistical analysis been performed appropriately and rigorously? -->?>

Reviewer #1: Yes

Reviewer #2: Yes

Reviewer #3: Yes

Reviewer #4: No

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3. Have the authors made all data underlying the findings in their manuscript fully available??>

The PLOS Data policy

Reviewer #1: Yes

Reviewer #2: Yes

Reviewer #3: No

Reviewer #4: Yes

**********

4. Is the manuscript presented in an intelligible fashion and written in standard English??>

Reviewer #1: Yes

Reviewer #2: Yes

Reviewer #3: Yes

Reviewer #4: Yes

**********

Reviewer #1:  The authors have effected all the concerns raised by the reviewers. Therefore, the manuscript is technically sound and can be accepted for publication without further review. Also, their conclusion as:

Serum indoxyl sulfate (IS) levels were measured using an enzyme method in the general population with an estimated glomerular filtration rate (eGFR) of ≥60 mL/min/1.73 m². The median serum IS level in this population was found to be 3.7 μmol/L. Factors such as age, eGFR, and constipation were noted to influence serum IS levels. Further research is needed to establish the reliability of serum IS as a potential biomarker.

Reviewer #2:  This study investigates the association between indoxyl sulfate (IS) and kidney function in a non-CKD population, and as a study based on the gut–kidney axis, it is potentially interesting. However, the analysis was conducted in non-CKD participants, with no comparison to CKD patients, which limits the generalizability and interpretability of the findings. Furthermore, IS does not have a standardized clinical reference range, and therefore the clinical significance of variations within the presumed “normal” range remains unclear.

The study also lacks important analyses and visualizations that would strengthen the results, such as stratification by eGFR stage, scatter plots with regression lines and 95% confidence intervals, and correlation coefficients between IS and eGFR. As a result, the practical value and robustness of the data are limited.

While IS is generally expected to increase with declining kidney function, the conclusion that IS could serve as an early biomarker for CKD is not adequately supported in this cross-sectional design, as temporal precedence cannot be established.

Overall, the current data do not substantiate the abstract’s claim that IS may serve as a “potential early biomarker” for CKD.

Reviewer #3:  The manuscript reflects the authors' deep understanding of the field, and the conclusions are supported by the analysis results, with limitations discussed in detail. However, the authors will still need to address some concerns, including data availability, statistical analysis issues, and wording. Please refer to the attached comments for more details.

Reviewer #4:  I would like to thank you for the opportunity to review this manuscript. The study evaluates serum indoxyl sulfate levels in 674 non-CKD participants and its associations with baseline characteristics, discussing the potential of serum IS as an early biomarker for CKD. The manuscript is well structured, provides clear background and rationale for the study, and presents the results in an understandable manner. I have listed my comments below to assist in clarifying and improving the manuscript.

Major comments:

1. In the statistical analysis, the authors state using t-tests to compare group differences but reported median and IQR in Table 1. Please ensure consistency between the descriptive statistics and statistical tests. Typically, median (IQR) suggests a non-parametric distribution and would be paired with a Wilcoxon rank-sum test, whereas a t-test is generally reported with mean and SD.

2. In the statistical analysis, the linear regression models include covariates that may introduce multicollinearity (e.g., age already included in eGFR and daily salt intake formulas as well as a separate covariate). Please clarify whether this was assessed and consider reporting diagnostics such as Variance Inflation Factor (VIF) to verify multicollinearity does not bias the results.

3. In the results, the authors state that there are no differences in characteristics between IS groups in Table S1; however, age, Cr, eGFR, and constipation are statistically significant. Please revise the text to ensure consistency with the table.

4. Similar to my comment #3, in Table S2, IS is statistically significant between constipation groups, but reported no significant difference in the results section. Please revise for consistency between the table and text.

5. The study period (June–October 2022) was relatively short. It may be helpful to clarify whether this duration adequately captures seasonal variability and briefly discuss any potential influence of the COVID-19 period on the findings.

Minor comments:

6. In the abstract, “In this study, we investigated the level of the serum IS levels …”, the level is duplicated.

7. In second-to-last paragraph of the Introduction, the sentence with reference [15] uses the full name of HPLC but does not introduce the abbreviation. In the quoted sentence, “The IS values measured using this kit positively correlated with HPLC”, the abbreviation is directly used. Please add the abbreviation after the full term when first mentioned.

8. In the statistical analysis, the sentence “Linear regression analysis was performed to evaluate the impact of serum IS on outcomes” incorrectly suggests that serum IS is the independent variable, but serum IS is actually the outcome. Please revise the wording to clarify that serum IS was treated as the outcome.

9. In the results section, the sentence quoting Table S2-S5 refer to “comparison”; this should be “constipation”.

**********

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Reviewer #1: Yes:  Musa Zakariah (PhD)

Reviewer #2: No

Reviewer #3: No

Reviewer #4: No

**********

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Attachment

Submitted filename: PONE-D-25-26168 Comments.pdf

pone.0332655.s007.pdf (115KB, pdf)
PLoS One. 2025 Dec 17;20(12):e0332655. doi: 10.1371/journal.pone.0332655.r003

Author response to Decision Letter 1


13 Oct 2025

Reviewer #1: The authors have effected all the concerns raised by the reviewers. Therefore, the manuscript is technically sound and can be accepted for publication without further review. Also, their conclusion as:

Serum indoxyl sulfate (IS) levels were measured using an enzyme method in the general population with an estimated glomerular filtration rate (eGFR) of ≥60 mL/min/1.73 m². The median serum IS level in this population was found to be 3.7 μmol/L. Factors such as age, eGFR, and constipation were noted to influence serum IS levels. Further research is needed to establish the reliability of serum IS as a potential biomarker.

→I appreciate your comment. I will do further research to establish the reliability of serum IS as a potential biomarker.

Reviewer #2: This study investigates the association between indoxyl sulfate (IS) and kidney function in a non-CKD population, and as a study based on the gut–kidney axis, it is potentially interesting. However, the analysis was conducted in non-CKD participants, with no comparison to CKD patients, which limits the generalizability and interpretability of the findings. Furthermore, IS does not have a standardized clinical reference range, and therefore the clinical significance of variations within the presumed “normal” range remains unclear.

The study also lacks important analyses and visualizations that would strengthen the results, such as stratification by eGFR stage, scatter plots with regression lines and 95% confidence intervals, and correlation coefficients between IS and eGFR. As a result, the practical value and robustness of the data are limited.

While IS is generally expected to increase with declining kidney function, the conclusion that IS could serve as an early biomarker for CKD is not adequately supported in this cross-sectional design, as temporal precedence cannot be established.

Overall, the current data do not substantiate the abstract’s claim that IS may serve as a “potential early biomarker” for CKD.

→Thank you for your suggestion. Previous studies have demonstrated that IS increases with declining renal function. However, since no large-scale measurements had been conducted in individuals with normal renal function (eGFR ≥60 ml/min/1.73m2), we performed this study. As you pointed out, this study could not demonstrate fluctuations within the normal range or temporal precedence; further follow-up studies are necessary, as noted in the Limitations section. We will conduct follow-up studies in the future.

Reviewer #3

Statistical Analysis

1. One major issue is the data availability. It’s claimed by the authors that “All relevant data are within the manuscript and its Supporting Information files.” However, no original data or description regarding original data access is mentioned in the manuscript, except for the summary and model statistics based on the original data. PLOS ONE has a strict policy regarding data availability. It’s crucial for the authors to address this major issue accordingly.

→Thank you for your comments. We have uploaded the original data to Supporting Information files, but didn’t mention them in our manuscript. We have added that the original data can be accessed within its Supporting Information files. (Supporting Information p.23 L13)

2. It’s not rare to observe that low eGFR tends to correlate with high urinary albumin-creatinine ratio (UACR) in clinical studies regarding patients with CKD. Even though this study focuses on patients with no diagnosed CKD using the provided definition, it’s still recommended to add a little discussion to clear potential concerns over multicollinearity between eGFR and UACR, as they are both used in the linear regression model. Potential supporting evidences include the Pearson/Spearman Correlation Coefficient or the Variance Inflation Factor (VIF).

→Thank you for your opinion. The reviewer says that the relation between eGFR and UACR may have multicollinearity. We attach this question by calculating Pearson Correlation Coefficient. Correlation was 0.09, and 95%CI was from -0.01 to 0.13. Therefore, the relation between eGFR and UACR didn’t have multicollinearity.

3. “The regression model did not include Cr because of the collinearity between Cr and eGFR.” In the Statistical analysis section of Materials and Methods, it’s claimed that there exists a strong correlation between Cr and eGFR. However, it’s very strange that Cr is significantly different between the male and female groups in Table 1, while eGFR shows almost no difference between those two groups. Is the “eGFR” actually the “Urinary albumin–creatinine ratio”? Please double-check.

→Thank you for your comments. If linear regression analysis included ten covariates: age, eGFR, estimated salt intake, urinary albumin–creatinine ratio (U-Alb/Cr), sex, prevalence of hypertension, prevalence of diabetes, smoking history, constipation, and Cr, each VIF was as follows. Age 2.30, eGFR 11.94, estimated salt intake 1.09, urinary albumin–creatinine ratio (U-Alb/Cr) 1.03, sex 17.40, prevalence of hypertension 1.06, prevalence of diabetes 1.03, smoking history 1.47, constipation 1.03, Cr 27.88. Because the VIF of Cr was more than 5 and the highest VIF, we judged that Cr had a strong correlation between Cr and eGFR, and we didn’t add the covariates. (Statistical analysis section of Material and Methods p.8 L2-9)

4. It’s mentioned in the Statistical analysis section of Materials and Methods that the Student’s t-test was used to compare the continuous variables between the male and female groups. In this case, because means and variances are directly used in the Student’s t-test and p-values are also derived from it, it’s highly recommended to use means and 95% confidence intervals (CI) instead of medians and quartile ranges in Table 1. This also enhances the understanding of why some variables are significantly or marginally significantly different between the male and female groups, as the current statistics do not always seem to facilitate each other.

→Thank you for your comment. As the reviewer pointed out, all items are not normal distribution. So, we used Mann-Whitney U test and p-values were also derived from it. And Table 1 was used median and quartile range. (Result, p.10, Table1)

5. “20.2-74.8”

In Table 1, the third quartile of BMI for the female group is shown to be “74.8”. This number is very suspicious, given that the corresponding number from the male group is only “25.9” and there is no significantly higher percentage of diabetes mellitus observed in the female group. Please double-check this number.

→Thank you for your comments. The reviewer pointed out that the Table 1, the third quartile of BMI for the female group isn’t correct. The correct number is 24.8. I have revised it. (Result, p.10, Table1)

Wording

“Furthermore, adapting IS in clinical practice is problematic because it’s primarily measured through high-performance liquid chromatography.”

In the Abstract section, it’s a little unclear what “adapting” means in this sentence. If it means measuring, but “adapting” is used instead of “measuring” to avoid repeating because “measured” is used later, it’s recommended to use words like quantifying or evaluating. If it means adding IS evaluation to regular CKD clinical practice, it’s recommended to use words like incorporating or adopting. Any other words that make the statement clearer are also perfectly acceptable.

→Thank you for your comment. As the reviewer pointed out, “adapting” is unclear in this sentence. I have used “quantifying” in this sentence instead of “adapting”.(Abstract p.2, L11)

2. “Key Words: indoxyl sulfate, normal renal function, renal function markers” It’s more common to use “Keywords” instead of “Key Words”.

→Thank you for your comments. I have changed Key Words to Keywords. (Abstract p.3, L5)

3. “In 2017, the estimated prevalence of chronic kidney disease (CKD) was 9.1% worldwide, which was approximately 30% higher than in 1990. The estimated number of deaths is 120 million, with cardiovascular disease-related deaths exceeding 140 million [1].” In the Introduction section, the verb tenses are not consistent. In the first sentence, “was” is used, while “is” is used in the sentence after that. It’s highly recommended to re-examine the wording and keep the tenses consistent.

→Thank you for your suggestion. The verb tenses weren’t consistent. I have changed and keep the tenses consistent. (Introduction p.4, L3)

4. “When disease-specific conditions damage the kidney, decreased glomerular filtration due to the reduced number of functioning nephrons.” In the sentence from the Introduction section, a verb is missing after “decreased glomerular filtration”, such as “occurs”.

→Thank you for your suggestion. As you pointed out, a verb after “decreased glomerular filtration” was missing. I have added “occurs” after “decreased glomerular filtration”.(Introduction, p.4 L20)

5. “In the present study, constipation was defined as less than once every 2 days and the participants were categorized into the non-constipation group, defined as those with defecation more than once a day, or the constipation group, defined as those with defecation less than once every 2 days.” In the Study setting and participants section of Materials and Methods, two categories are mentioned regarding the constipation group categorization. However, it’s unclear how a category is assigned for subjects with average defecation frequencies of less than once a day but more than once every two days. Please consider making the definition clearer.

→Thank you for your comment. Our reference categorized into three defecation frequency groups: 1 times/day; 1 time/2-3 days; 1 time/4 days. Due to the limited number of subjects in our study who reported their defecation frequency, we categorized them into two groups. However, we confused the reviewer, so we revised our category accordingly. After that, there weren’t categorized subjects with average defecation frequencies of less than once a day but more than once every two days, and the definition was clearer (Material and Method, p.9)

6. In Table 1, it’s recommended to change the header “P” to “p-value” to be consistent with the format of Table 2.

→Thank you for your comment. The header in Table 1 has changed to “p-value”. (Results, p.9 Table 1)

7. In Table 1, the percentage format of the prevalence of hypertension for the male group should be consistent with other formats in the same table. Please keep one decimal place.

→Thank you for your comment. As the reviewer pointed out, the percentage format of the prevalence of hypertension for the male group in Table 1 has changed to “27.0”. (Results, p.9 Table 1)

8. In the footnote of Table 1, the first three lines might have a different font size from the last line. It’s recommended to double-check.

→Thank you for your comment. As the reviewer pointed out, the first three lines might have a different font size from the last line in the footnote of Table 1. I have changed the font size of the footnote in Table 1. (Results, p.10 Table 1)

9. In addition, it’s better to keep Table 1 and 2 formats consistent. For example, all cells in Table 1 are presented in bold fonts regardless of whether the p-values are significant or not, while only the significant p-values themselves in Table 2 are in bold fonts.

→Thank you for your suggestion. As the reviewer pointed out, the format of Table 1 and Table 2 wasn’t consistent. We revised the format of Table 1 only the significant p-values themselves are in bold fonts. (Results, p.11 Table 2)

10. “The median IS level in the participants was 3.7 (IQR: 2.7–5.0) μmol/L, with males having an IS level of 3.85 (IQR: 2.6–5.4) μmol/L and females having an IS level of 3.7 (IQR: 2.8–4.8) μmol/L (Fig 2).” In the Serum IS concentration section of Results, “3.85” has one more decimal place than all other numbers reported in the same sentence. Please consider making it consistent with others, including changing it accordingly in Figure 2 and its legend. This issue is also observed elsewhere. Please revise all the number formats where applicable.

→Thank you for your comment. As the reviewer pointed out, “3.85” has one more decimal place than all other numbers reported in the same sentence. We revised Table 2 and Figure 2 in “3.9” to be consistent with others. (Results, p.10 Table 2, p.11 Fig 2)

Reviewer #4

Major comments:

In the statistical analysis, the authors state using t-tests to compare group differences but reported median and IQR in Table 1. Please ensure consistency between the descriptive statistics and statistical tests. Typically, median (IQR) suggests a non-parametric distribution and would be paired with a Wilcoxon rank-sum test, whereas a t-test is generally reported with mean and SD.

→Thank you for your comment. As the reviewer pointed out, all items are not normal distribution. So, we used Mann-Whitney U test and p-values were also derived from it. And Table 1 was used median and quartile range. (Result, p.10, Table1)

In the statistical analysis, the linear regression models include covariates that may introduce multicollinearity (e.g., age already included in eGFR and daily salt intake formulas as well as a separate covariate). Please clarify whether this was assessed and consider reporting diagnostics such as Variance Inflation Factor (VIF) to verify multicollinearity does not bias the results.

→Thank you for your comments. If linear regression analysis included ten covariates: age, eGFR, estimated salt intake, urinary albumin–creatinine ratio (U-Alb/Cr), sex, prevalence of hypertension, prevalence of diabetes, smoking history, constipation, and Cr, each VIF was as follows. Age 2.30, eGFR 11.94, estimated salt intake 1.09, urinary albumin–creatinine ratio (U-Alb/Cr) 1.03, sex 17.40, prevalence of hypertension 1.06, prevalence of diabetes 1.03, smoking history 1.47, constipation 1.03, Cr 27.88. Because the VIF of Cr was more than 5 and the highest VIF, we judged that Cr had a strong correlation between Cr and eGFR, and we didn’t add the covariates. (Statistical analysis section of Material and Methods p.8 L7-9)

In the results, the authors state that there are no differences in characteristics between IS groups in Table S1; however, age, Cr, eGFR, and constipation are statistically significant. Please revise the text to ensure consistency with the table.

→Thank you for your comment. As the reviewer pointed out, Age, Cr, eGFR, and constipation are statistically significant. We revised the text. (Result, p.10-11 L2)

Similar to my comment #3, in Table S2, IS is statistically significant between constipation groups, but reported no significant difference in the results section. Please revise for consistency between the table and text.

→Thank you for your comment. As the reviewer pointed out, Significant differences were observed in serum IS levels between constipation group and non-constipation group. We revised the text. (Result, p.11, L2-5)

The study period (June–October 2022) was relatively short. It may be helpful to clarify whether this duration adequately captures seasonal variability and briefly discuss any potential influence of the COVID-19 period on the findings.

→Thank you for your suggestion. As the reviewer pointed out, there seems to be seasonal variability since IS was the gut microbiota. But this study consisted of specific health checkup. So, we have added this sentence in limitation. (Discussion, p.14 L1.)

Minor comments:

In the abstract, “In this study, we investigated the level of the serum IS levels …”, the level is duplicated.

→Thank you for your comment. As the reviewer pointed out, the level is duplicated. We revised the text. (Abstract, p.2, L18)

7. In second-to-last paragraph of the Introduction, the sentence with reference [15] uses the full name of HPLC but does not introduce the abbreviation. In the quoted sentence, “The IS values measured using this kit positively correlated with HPLC”, the abbreviation is directly used. Please add the abbreviation after the full term when first mentioned.

→Thank you for your comment. We have added the abbreviation after the full term. (Results, p.5, L8)

In the statistical analysis,

Attachment

Submitted filename: Respondse to Reviewers.docx

pone.0332655.s010.docx (31KB, docx)

Decision Letter 1

Tatsuo Shimosawa

27 Oct 2025

Dear Dr. Hisano,

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Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

Reviewer #2: All comments have been addressed

Reviewer #3: (No Response)

Reviewer #4: All comments have been addressed

**********

2. Is the manuscript technically sound, and do the data support the conclusions??>

Reviewer #2: Yes

Reviewer #3: Yes

Reviewer #4: Yes

**********

3. Has the statistical analysis been performed appropriately and rigorously? -->?>

Reviewer #2: Yes

Reviewer #3: Yes

Reviewer #4: Yes

**********

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The PLOS Data policy

Reviewer #2: Yes

Reviewer #3: No

Reviewer #4: Yes

**********

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Reviewer #2: Yes

Reviewer #3: Yes

Reviewer #4: Yes

**********

Reviewer #2: (No Response)

Reviewer #3: Thanks for the authors’ responses. Undoubtedly, the authors have reviewed all reviewer comments carefully and resolved most of my concerns. I just have a few follow-up comments based on my previous ones that would need the authors’ attention. The details can be found in the attached comments.

Reviewer #4: The authors have addressed all my previous comments and concerns. Thank you for the careful revisions.

**********

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Attachment

Submitted filename: PONE-D-25-26168_R1 Comments.pdf

pone.0332655.s009.pdf (65.7KB, pdf)
PLoS One. 2025 Dec 17;20(12):e0332655. doi: 10.1371/journal.pone.0332655.r005

Author response to Decision Letter 2


5 Nov 2025

1. Data S1. Anonymized data files required to reproduce the analysis - original data. (CSV) Somehow, I could only access the “Suppl Table.pptx” file in the downloading link of Supporting Information. However, it was claimed that a CSV file with the original data was also uploaded, as written in both the manuscript and the authors’ response. It could be that the downloading link from my side might not have been updated. But it will be crucial for the authors to confirm that the original data can actually be downloaded using the downloading link in the manuscript.

→Thank you for your comment. I intended to upload Accessible Data to the Supporting Information section, but it didn't appear correctly. I sent an email to Editorial Office and confirmed the procedure. I uploaded it to the Supporting Information section as CSV file.

2. KeyWords: indoxyl sulfate, normal renal function, renal function markers Just like “Research” should never be written as “ReSearch”, it is inappropriate to use “KeyWords” instead of “Keywords”. Please revise it.

→Thank you for your comment. As the reviewer pointed out, it was inappropriate in this manuscript. I changed from “keyWords” to Keywords. (Abstract p.3, L5)

3. In the present study, constipation was defined as at most once every 2 days and the participants were categorized into the non-constipation group, defined as those with defecation more than once a day (≥1 time /day), or the constipation group, defined as those with defecation at most once every 2 days (≤1 time / 2days). I think the authors were confused about my previous comment on the constipation definition. I was thinking that the current definition was unclear in some scenarios. For example, if a subject had 4 defecations on different days of the past week, that would result in a defecation frequency of 4 / 7 = 0.57 per day. This value is neither ≥1 time/day nor ≤1 time/2days, and thus it’s confusing how this scenario should be classified. However, the data collection method might be specifically designed such that no confusion would be possible. For example, if subjects were asked how frequent their defecation was, with provided options like “daily”, “once every two days”, and “once more than two days”, the current definition would make sense. It will be helpful if the authors could bear in mind that there will be readers thinking like me in the way shown in the first paragraph, and try to avoid confusion in this case.

→Thank you for your comment. Our study used a multiple-choice questionnaire with options: more than once a day, once every 2–3 days, once every 4–5 days, and less than once every 6 days, with subjects choosing the answer. I revised the sentence to avoid misunderstanding. (Material and Methods, p.7, L13-14)

4. Figure 2 Somehow, there is a grey text box with Japanese characters in Figure 2. Please double-check if it was accidentally placed there or intentional.

→Thank you for your comment. As the reviewer pointed out, there was a grey text box with Japanese characters accidentally in Fig2. I have revised Fig2 in our manuscript. (Fig2)

Attachment

Submitted filename: Respondse_to_Reviewers_auresp_2.docx

pone.0332655.s011.docx (20.1KB, docx)

Decision Letter 2

Tatsuo Shimosawa

20 Nov 2025

The evaluation of indoxyl sulfate in the general population in Kanegasaki Iwate: A cross-sectional study (KANEGASAKI study)

PONE-D-25-26168R2

Dear Dr. Hisano,

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Kind regards,

Tatsuo Shimosawa, M.D., Ph.D.

Academic Editor

PLOS ONE

Additional Editor Comments (optional):

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

Reviewer #3: All comments have been addressed

**********

2. Is the manuscript technically sound, and do the data support the conclusions??>

Reviewer #3: Yes

**********

3. Has the statistical analysis been performed appropriately and rigorously? -->?>

Reviewer #3: Yes

**********

4. Have the authors made all data underlying the findings in their manuscript fully available??>

The PLOS Data policy

Reviewer #3: Yes

**********

5. Is the manuscript presented in an intelligible fashion and written in standard English??>

Reviewer #3: Yes

**********

Reviewer #3: (No Response)

**********

what does this mean? ). If published, this will include your full peer review and any attached files.

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Reviewer #3: No

**********

Acceptance letter

Tatsuo Shimosawa

PONE-D-25-26168R2

PLOS One

Dear Dr. Hisano,

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Associated Data

    This section collects any data citations, data availability statements, or supplementary materials included in this article.

    Supplementary Materials

    S1 Table. Comparison of the participants with low and high IS levels. eGFR: estimated glomerular filtration rate, BMI: body mass index, IS: indoxyl sulfate.

    (PPTX)

    pone.0332655.s001.pptx (57.2KB, pptx)
    S2 Table. Comparison of the participants with and without constipation. eGFR: estimated glomerular filtration rate, BMI: body mass index, IS: indoxyl sulfate.

    (PPTX)

    pone.0332655.s002.pptx (56.5KB, pptx)
    S3 Table. Comparison of the participants with and without hypertension. eGFR: estimated glomerular filtration rate, BMI: body mass index, IS: indoxyl sulfate.

    (PPTX)

    pone.0332655.s003.pptx (57KB, pptx)
    S4 Table. Comparison of the participants with and without diabetes mellitus. eGFR: estimated glomerular filtration rate, BMI: body mass index, IS: indoxyl sulfate.

    (PPTX)

    pone.0332655.s004.pptx (57.3KB, pptx)
    S5 Table. Comparison of the participants with and without smoking history. eGFR: estimated glomerular filtration rate, BMI: body mass index, IS: indoxyl sulfate.

    (PPTX)

    pone.0332655.s005.pptx (56.9KB, pptx)
    S1 Data. Anonymized data files required to reproduce the analysis – original data.

    (CSV)

    pone.0332655.s006.CSV (96.5KB, CSV)
    Attachment

    Submitted filename: Response to Reviewer.docx

    pone.0332655.s008.docx (20.4KB, docx)
    Attachment

    Submitted filename: PONE-D-25-26168 Comments.pdf

    pone.0332655.s007.pdf (115KB, pdf)
    Attachment

    Submitted filename: Respondse to Reviewers.docx

    pone.0332655.s010.docx (31KB, docx)
    Attachment

    Submitted filename: PONE-D-25-26168_R1 Comments.pdf

    pone.0332655.s009.pdf (65.7KB, pdf)
    Attachment

    Submitted filename: Respondse_to_Reviewers_auresp_2.docx

    pone.0332655.s011.docx (20.1KB, docx)

    Data Availability Statement

    All relevant data are within the manuscript and its Supporting Information files.


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