An examination of the relationship between the solid-state features of the crystal structures of eleven 3- and 4-pyridyl trifluoroborate organocatalysts and their solution-state reactivity is reported.
Keywords: organocatalysts, crystal structure, charge-enhanced reactivity, pyridyl trifluoroborate salt, organic cation
Abstract
The crystal structures of eleven 3- and 4-pyridyl borate salts with a variety of cations are reported. These are potassium trifluoro(pyridin-3/4-yl)borate, K+·C5H4BF3N−, 1 and 2 (as the monohydrate), tetrabutylammonium trifluoro(pyridin-3/4-yl)borate, C16H36N+·C5H4BF3N−, 3 and 4, tetraphenylphosphonium trifluoro(pyridin-3/4-yl)borate, C24H20P+·C5H4BF3N−, 5 and 6, tetrakis(3,5-dimethoxyphenyl)phosphonium trifluoro(pyridin-3/4-yl)borate, C32H36O8P+·C5H4BF3N−, 7 and 8, and tetrakis[4-(dimethylamino)phenyl]phosphonium trifluoro(pyridin-3/4-yl)borate, C32H40N4P+·C5H4BF3N−, 9 and 10, and the hemihydrate, C32H40N4P+·C5H4BF3N−·0.5H2O, 10h. The effects of the position of the pyridine N atom and the identity of the cations on the crystal packing of the salts are examined. The N⋯H and F⋯H anion–cation contacts and the Hirshfeld surface compositions of the anions for the salts containing organic cations are compared to the reactivity of the salts in a low-polarity solvent to look for trends between solid-state features and solution-state reactivity.
Introduction
When referring to a catalyst for a chemical reaction, often the first type of species to come to mind is a transition metal. Substances of this sort play an enormous role in modern chemistry, ranging from applications from polymer synthesis to protein modification to the generation of vital chemical feedstocks such as ammonia (Wang et al., 2025 ▸; Ghosh, 2025 ▸; Varadwaj et al., 2025 ▸). Despite their ubiquity, transition-metal catalysts are not without their drawbacks. First, many of them require the use of scarce late transition metals, such as palladium or ruthenium, in order to function. As a result, they are costly to manufacture and expensive to purchase. Significant work has gone into their replacement with abundant early transition metals, such as nickel or titanium, as more sustainable and ‘greener’ alternatives (Sun et al., 2025 ▸; Butler et al., 2024 ▸). Unfortunately, many of these species still suffer from a major drawback of transition-metal catalysts: air and moisture sensitivity. The impressive chemical reactions enabled by transition-metal catalysts are often made more difficult, especially at large scale, by the need to operate under strictly inert conditions. Thus, there is a demand for catalysts that are stable under ambient conditions.
In the last few decades, transition-metal-free catalysts that use only organic molecules to catalyze chemical reactions have been developed for a variety of transformations (List, 2007 ▸). These catalysts, known as organocatalysts, tend to be more tolerant of air and moisture than transition-metal catalysts. However, they are often less catalytically active and therefore require higher catalyst loadings to achieve reasonable reaction rates. For example, chiral amine organocatalysts, such as (S)-proline, may require loadings of up to 40%, while transition-metal catalysts, such as the ruthenium-based family of Grubb’s catalysts, often operate with catalyst loadings of less than 1% (Mukherjee et al., 2007 ▸; Kajetanowicz & Grela, 2021 ▸).
Our group has demonstrated that the addition of positively charged centers to Brønsted acid organocatalysts can significantly increase their catalytic activity (Fan & Kass, 2016 ▸; Samet et al., 2015 ▸; Ma & Kass, 2016 ▸; Riegel et al., 2022 ▸). It follows that the addition of a negatively charged center could increase the activity of Brønsted bases or nucleophilic catalysts. The latter, derived from a pyridine scaffold such as 4-(dimethylamino)pyridine (DMAP), have been used as catalysts for a wide range of reactions, including esterifications (Neises & Steglich, 1978 ▸), macrolactonizations (Boden & Keck, 1985 ▸), and silylations (Chaudhary & Hernandez, 1979 ▸). Given the widespread applications of nucleophilic catalysts, the development of more reactive analogues by incorporation of a negative charge center could potentially increase their effectiveness. Recent work has demonstrated the validity of anion-enhanced nucleophilic catalysts with the development of anionic sulfonamide-based catalysts (Helberg et al., 2020 ▸; Burger, Franta, O’Donoghue et al., 2025 ▸; Burger, Franta, Ofial et al., 2025 ▸) that showed significant improvement in reactivity over DMAP and related neutral pyridine derivatives. Recently, our group has developed a similar family of negatively charged organocatalysts based on a pyridyl borate scaffold (Dempsey, Lovstedt et al., 2023 ▸; Dempsey, Cao et al., 2023 ▸). These were found to have increased nucleophilicity compared to DMAP, and the most reactive of which was comparable in performance to the anionic sulfonamide catalysts (Dempsey, Lovstedt et al., 2023 ▸). Following on from our previous studies, in this article, we report the crystal structures of ten different 3- or 4-pyridyl trifluoroborate salts (Fig. 1 ▸). Some of the salts had been investigated as anionic catalysts in our previous work, while several novel salts have been synthesized and characterized. Using the crystal structures, we examine the intermolecular interactions between the ion pairs of the various salts and search for trends between selected crystallographic parameters and anion nucleophilicity. Additionally, the effects of counter-ion identity on the nucleophilicity of the catalysts will be examined.
Figure 1.
Pyridyl trifluoroborate salts investigated in this work.
Experimental
Synthesis
The 3- and 4-pyridyl trifluoroborate salts were synthesized as illustrated in Fig. 2 ▸ for the 3-substituted derivatives (Dempsey, Lovstedt et al., 2023 ▸). Potassium bifluoride was reacted with one of the two different pyridyl boronic acids to give the corresponding pyridyl trifluoroborate anion as its potassium salt. Cation exchange via ion metathesis afforded the desired salts. Single crystals of each were grown by evaporation (see the supporting information for specific details). These compounds were also characterized by NMR spectroscopy (1H, 13C, 11B, 19F, and 31P) and high-resolution mass spectrometry. The results of these analyses are provided in the supporting information.
Figure 2.
The synthetic pathway for the 3-pyridyl trifluoroborate salts. The 4-pyridyl salts were synthesized in an analogous manner.
Crystal structure, data collection and refinement
Crystals were placed onto the tip of a 0.15 mm MiTeGen loop and mounted on a Bruker D8 Venture diffractometer equipped with a PHOTON III CPAD detector and IµS 3.0 Mo and IµS 2.0 Cu microfocus X-ray sources for data collection. A preliminary set of unit-cell constants was calculated from reflections harvested from three sets of frames. These initial sets of frames were oriented such that orthogonal wedges of reciprocal space were surveyed. This produced initial orientation matrices which were used to determine a data collection strategy to ensure complete data coverage to a desired resolution using the APEX5 software package (Bruker, 2023 ▸). The data collection was carried out using Cu Kα radiation for compounds 3 and 4, and Mo Kα radiation for compounds 1, 2, 5–10, and 10h (the hemihydrate of 10). All major sections of frames were collected with 1.2° steps in ω or φ at different detector positions in 2θ. The intensity data were corrected for absorption and decay using the SADABS or TWINABS software (Krause et al., 2015 ▸; Sheldrick, 2012 ▸). Final unit-cell constants were calculated from the xyz centroids of strong reflections from the actual data collection after integration in the SAINT software (Bruker, 2016 ▸). The structures were solved using SHELXT (Sheldrick, 2015a ▸) and refined using SHELXL2019 (Sheldrick, 2015b ▸) within the ShelXle program (Hübschle et al., 2011 ▸). Space groups were determined based on systematic absences and intensity statistics. A dual-space method solution was calculated which provided most non-H atoms from the E-map. Full-matrix least-squares/difference Fourier cycles were performed which located the remaining non-H atoms. All non-H atoms were refined with anisotropic displacement parameters. H atoms on water molecules were located in the difference map. All other H atoms were placed in ideal positions and refined as riding atoms with relative isotropic displacement parameters. Crystal structure images were created using Mercury (Macrae et al., 2020 ▸). Crystal information and refinement details for each structure are provided in Table 1 ▸.
Table 1. Experimental details.
Experiments were carried out using a Bruker D8 Venture diffractometer equipped with a PHOTON III CPAD detector.
| 1 | 2 | 3 | 4 | |
|---|---|---|---|---|
| Crystal data | ||||
| Chemical formula | K+·C5H4BF3N− | K+·C5H4BF3N−·H2O | C16H36N+·C5H4BF3N− | C16H36N+·C5H4BF3N− |
| M r | 185.00 | 203.02 | 388.36 | 388.36 |
| Crystal system, space group | Orthorhombic, P212121 | Monoclinic, P21/c | Monoclinic, P21/n | Monoclinic, P21/c |
| Temperature (K) | 100 | 100 | 100 | 100 |
| a, b, c (Å) | 5.8637 (2), 7.2260 (3), 16.5602 (8) | 10.8271 (15), 8.5041 (11), 8.8435 (12) | 9.4405 (7), 15.9663 (10), 15.4847 (11) | 8.8089 (6), 13.2030 (8), 19.9075 (14) |
| α, β, γ (°) | 90, 90, 90 | 90, 90.043 (5), 90 | 90, 100.159 (2), 90 | 90, 98.652 (2), 90 |
| V (Å3) | 701.67 (5) | 814.26 (19) | 2297.4 (3) | 2289.0 (3) |
| Z | 4 | 4 | 4 | 4 |
| Radiation type | Mo Kα | Mo Kα | Mo Kα | Mo Kα |
| μ (mm−1) | 0.74 | 0.65 | 0.08 | 0.08 |
| Crystal size (mm) | 0.16 × 0.09 × 0.04 | 0.17 × 0.17 × 0.07 | 0.32 × 0.06 × 0.06 | 0.08 × 0.07 × 0.06 |
| Data collection | ||||
| Absorption correction | Multi-scan (SADABS; Krause et al., 2015 ▸) | Multi-scan (SADABS; Krause et al., 2015 ▸) | Multi-scan (SADABS; Krause et al., 2015 ▸) | Multi-scan (SADABS; Krause et al., 2015 ▸) |
| Tmin, Tmax | 0.665, 0.746 | 0.579, 0.745 | 0.662, 0.745 | 0.705, 0.745 |
| No. of measured, independent and observed [I > 2σ(I)] reflections | 11196, 1733, 1694 | 19163, 1723, 1514 | 23792, 4228, 3058 | 24696, 4206, 2997 |
| R int | 0.034 | 0.075 | 0.071 | 0.059 |
| (sin θ/λ)max (Å−1) | 0.666 | 0.632 | 0.605 | 0.603 |
| Refinement | ||||
| R[F2 > 2σ(F2)], wR(F2), S | 0.019, 0.060, 0.99 | 0.032, 0.085, 1.11 | 0.043, 0.106, 1.03 | 0.040, 0.098, 1.03 |
| No. of reflections | 1733 | 1723 | 4228 | 4206 |
| No. of parameters | 100 | 158 | 248 | 248 |
| No. of restraints | 0 | 176 | 0 | 0 |
| H-atom treatment | H-atom parameters constrained | H atoms treated by a mixture of independent and constrained refinement | H-atom parameters constrained | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.27, −0.17 | 0.47, −0.32 | 0.20, −0.19 | 0.19, −0.20 |
| Absolute structure | Flack x determined using 680 quotients [(I+) − (I−)]/[(I+) + (I−)] (Parsons et al., 2013 ▸) | – | – | – |
| Absolute structure parameter | 0.008 (16) | – | – | – |
| 5 | 6 | 7 | 8 | |
|---|---|---|---|---|
| Crystal data | ||||
| Chemical formula | C24H20P+·C5H4BF3N− | C24H20P+·C5H4BF3N− | C32H36O8P+·C5H4BF3N− | C32H36O8P+·C5H4BF3N− |
| M r | 485.27 | 485.27 | 725.48 | 725.48 |
| Crystal system, space group | Monoclinic, Pc | Triclinic, P1 | Monoclinic, P21/n | Triclinic, P
|
| Temperature (K) | 126 | 125 | 150 | 150 |
| a, b, c (Å) | 10.1711 (2), 9.3254 (2), 13.7076 (3) | 9.4898 (3), 10.2000 (3), 14.4239 (5) | 21.3755 (8), 7.5380 (3), 23.0617 (8) | 14.702 (4), 15.141 (5), 16.017 (5) |
| α, β, γ (°) | 90, 108.701 (1), 90 | 99.787 (2), 101.625 (2), 113.231 (2) | 90, 99.998 (2), 90 | 84.473 (11), 88.059 (10), 85.136 (10) |
| V (Å3) | 1231.52 (5) | 1207.43 (7) | 3659.5 (2) | 3534.7 (18) |
| Z | 2 | 2 | 4 | 4 |
| Radiation type | Cu Kα | Cu Kα | Mo Kα | Mo Kα |
| μ (mm−1) | 1.33 | 1.36 | 0.14 | 0.15 |
| Crystal size (mm) | 0.25 × 0.25 × 0.24 | 0.10 × 0.07 × 0.06 | 0.31 × 0.07 × 0.05 | 0.16 × 0.07 × 0.05 |
| Data collection | ||||
| Absorption correction | Multi-scan (SADABS; Krause et al., 2015 ▸) | Multi-scan (SADABS; Krause et al., 2015 ▸) | Multi-scan (SADABS; Krause et al., 2015 ▸) | Multi-scan (TWINABS; Sheldrick, 2012 ▸) |
| Tmin, Tmax | 0.661, 0.754 | 0.605, 0.754 | 0.661, 0.746 | 0.682, 0.745 |
| No. of measured, independent and observed [I > 2σ(I)] reflections | 24137, 4783, 4708 | 24637, 9470, 9274 | 43069, 9058, 6479 | 12796, 12796, 9875 |
| R int | 0.035 | 0.034 | 0.052 | – |
| (sin θ/λ)max (Å−1) | 0.625 | 0.638 | 0.667 | 0.600 |
| Refinement | ||||
| R[F2 > 2σ(F2)], wR(F2), S | 0.029, 0.076, 1.02 | 0.038, 0.106, 1.06 | 0.046, 0.123, 1.02 | 0.053, 0.132, 1.06 |
| No. of reflections | 4783 | 9470 | 9058 | 12796 |
| No. of parameters | 316 | 631 | 468 | 967 |
| No. of restraints | 2 | 3 | 0 | 30 |
| H-atom treatment | H-atom parameters constrained | H-atom parameters constrained | H-atom parameters constrained | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.25, −0.26 | 0.35, −0.26 | 0.45, −0.35 | 0.44, −0.35 |
| Absolute structure | Flack x determined using 2179 quotients [(I+) − (I−)]/[(I+) + (I−)] (Parsons et al., 2013 ▸) | Flack x determined using 4183 quotients [(I+) − (I−)]/[(I+) + (I−)] (Parsons et al., 2013 ▸) | – | – |
| Absolute structure parameter | −0.011 (12) | 0.000 (15) | – | – |
| 9 | 10 | 10h | |
|---|---|---|---|
| Crystal data | |||
| Chemical formula | C32H40N4P+·C5H4BF3N− | C32H40N4P+·C5H4BF3N− | C32H40N4P+·C5H4BF3N−·0.5H2O |
| M r | 657.55 | 657.55 | 666.56 |
| Crystal system, space group | Monoclinic, P21/n | Monoclinic, P21/n | Monoclinic, P21/n |
| Temperature (K) | 150 | 100 | 150 |
| a, b, c (Å) | 15.802 (2), 12.0571 (15), 18.121 (2) | 15.9231 (9), 11.5958 (6), 18.7330 (12) | 11.9373 (3), 23.4315 (7), 13.0949 (3) |
| α, β, γ (°) | 90, 94.405 (3), 90 | 90, 96.696 (2), 90 | 90, 105.938 (1), 90 |
| V (Å3) | 3442.4 (8) | 3435.3 (3) | 3521.96 (16) |
| Z | 4 | 4 | 4 |
| Radiation type | Mo Kα | Mo Kα | Mo Kα |
| μ (mm−1) | 0.13 | 0.13 | 0.13 |
| Crystal size (mm) | 0.17 × 0.10 × 0.05 | 0.34 × 0.25 × 0.04 | 0.16 × 0.16 × 0.10 |
| Data collection | |||
| Absorption correction | Multi-scan (SADABS; Krause et al., 2015 ▸) | Multi-scan (SADABS; Krause et al., 2015 ▸) | Multi-scan (SADABS; Krause et al., 2015 ▸) |
| Tmin, Tmax | 0.629, 0.746 | 0.629, 0.745 | 0.644, 0.745 |
| No. of measured, independent and observed [I > 2σ(I)] reflections | 31607, 6295, 4970 | 52555, 6526, 4822 | 31433, 7198, 5810 |
| R int | 0.037 | 0.060 | 0.032 |
| (sin θ/λ)max (Å−1) | 0.602 | 0.610 | 0.625 |
| Refinement | |||
| R[F2 > 2σ(F2)], wR(F2), S | 0.039, 0.106, 1.04 | 0.051, 0.142, 1.04 | 0.044, 0.117, 1.04 |
| No. of reflections | 6295 | 6526 | 7198 |
| No. of parameters | 487 | 525 | 448 |
| No. of restraints | 186 | 367 | 4 |
| H-atom treatment | H-atom parameters constrained | H-atom parameters constrained | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.21, −0.31 | 0.96, −0.35 | 0.55, −0.46 |
Hirshfeld surface analysis
Hirshfeld surfaces and fingerprint plots for the crystal structures of compounds 3–10 and 10h were computed using the CrystalExplorer program (Spackman et al., 2021 ▸).
SN2 reaction kinetics
Data were collected using a Bruker Avance 400 MHz spectrometer. In a nitrogen-atmosphere glovebox, an amount of each salt to make a 25 mM solution and iodooctane to make a 500 mM solution were dissolved in deuterated dichloromethane (DCM) and placed in a screw cap NMR tube. The tube was inverted several times to ensure mixing, placed in the NMR spectrometer, and 1H spectra were taken at intervals ranging from 10 to 20 min. Pseudo-first-order rate constants were obtained using the Reaction Monitoring program within the MNova software package (Mestrelab Research, 2023 ▸). Additional experimental details are provided in the supporting information.
Crystal structure analysis
This section will analyze and discuss the crystal packing of the various salts with a particular focus on close contacts between the F and N atoms of the anions with H atoms of the cations. Additionally, the effects of the counter-ion and the position of the pyridine N atom in the anion on the packing of the anions will be examined. A close contact is defined as a distance between atoms less than the sum of their van der Waals radii. The van der Waals radii used in this work are as follows: H 1.10 Å, C 1.70 Å, N 1.55 Å, O 1.52 Å, and F 1.47 Å (Mantina et al., 2009 ▸). Close contacts involving H atoms are defined after normalizing the H-atom bond lengths to the distances observed in neutron diffraction: 1.089 Å for C—H bonds and 0.993 Å for O—H bonds. The standard uncertainties of contacts involving H atoms constrained as riding atoms are the uncertainties in the distance between the acceptor atom and the donor atom upon which the H atom is riding. The uncertainties for average distances are the average of the uncertainties of the individual measurements. The terms ortho, meta, and para are used to refer to the positions of aromatic H atoms in relation to the P atom for cations and the B atom for anions.
Potassium salts
Compounds 1 and 2 are the potassium salts of the 3-pyridyl and 4-pyridyl trifluoroborate anions, respectively. Salt 1 crystallized in the orthorhombic space group P212121 with Z′ = 1 (Fig. 3 ▸). The F atoms of the anion interact with the potassium cation, forming a layered structure in which layers of trifluoroborate and potassium cations interact, separated by layers of pyridine moieties. This layered structure can be clearly seen when viewing a packing diagram of the salt along the crystallographic a and b axes (Fig. 4 ▸). The pyridine N atom links the two layers via an interaction with a potassium cation in the next layer. The anions form anion–anion contacts via C—H⋯π contacts between the pyridine groups.
Figure 3.

The asymmetric unit of salt 1. The following applies to all images of crystal structures: non-H atoms are drawn as displacement ellipsoids at the 50% probability level. H atoms are drawn as fixed sized spheres.
Figure 4.
A 3×3×3 crystal packing diagram of salt 1, viewed along the crystallographic b axis.
Attempts to obtain a neat form of salt 2 were unsuccessful; however, the monohydrate was obtained in the monoclinic space group P21/c (Fig. 5 ▸). The crystal was a pseudo-merohedral twin with two twin domains having an approximate ratio of 55:45. Like salt 1, the crystal packing of 2 consists of layers of trifluoroborate moieties and potassium cations alternating with layers of pyridine moieties, which can be clearly seen when viewing a packing diagram of the crystal along the crystallographic c axis (Fig. 6 ▸). The pyridine group of the anion is disordered and was modeled in two positions with equal occupancy, with the second position of the pyridine ring rotated by approximately 84° from the first (Fig. 5 ▸, top right). The cocrystallized water molecule plays a vital role in the packing of this crystal, linking the pyridine layers with the trifluoroborate–potassium layers via a 1.81 (3) Å O—H⋯N hydrogen bond involving the pyridine N atom, and a K⋯O contact with a potassium cation (Fig. 5 ▸, bottom).
Figure 5.
(Top left) The asymmetric unit of salt 2 showing only one of the disordered parts of the anion. (Top right) A superposition of the two equally occupied disordered parts of the anion. (Bottom) A selection of close contacts in 2. O—H bond distances have been normalized to 0.993 Å.
Figure 6.

A 3×3×3 crystal packing diagram of 2, viewed along the crystallographic c axis.
The second H atom of the water molecule forms a hydrogen bond with an F atom from an adjacent trifluoroborate moiety. There are no significant contacts between the anions in the structure, and the closest anion–anion contacts are between H atoms. The importance of the water in the crystal packing offers a potential explanation for why single crystals of the neat salt were difficult to obtain.
Tetrabutylammonium (TBA) salts
Compounds 3 and 4 are the tetrabutylammonium salts of the 3- and 4-pyridyl trifluoroborate anions, respectively. Salt 3 crystallized in the monoclinic space group P21/n with Z′ = 1 (Fig. 7 ▸). An inspection of the crystal packing shows that 3 packs with a ‘channel’ structure, with channels of anions running along the crystallographic a axis separated by channels of cations (Fig. 8 ▸). This packing motif is particularly apparent when viewing the crystal along the crystallographic a axis. The anions in 3 pack as dimers interacting across a crystallographic inversion center via two 2.430 (2) Å C—H⋯F contacts between ortho atoms H5 and F3 (Fig. 9 ▸). There are four contacts between the F atoms of the anion and the cations, with distances ranging from 2.312 (2) to 2.576 (2) Å, with an average H⋯F contact distance of 2.394 (2) Å. The pyridine N atom of the anion forms contacts with two α-H atoms on an adjacent cation, with distances of 2.609 (3) and 2.583 (2) Å.
Figure 7.

The asymmetric unit of 3. H atoms have been omitted from the cation for clarity.
Figure 8.
A 3×3×3 packing diagram of salt 3, viewed along the crystallographic a axis. The image on the right shows the same view with the cations hidden to highlight the arrangement of the anions.
Figure 9.

Anion–anion contacts in 3.
Compound 4 crystallized in the monoclinic space group P21/c with Z′ = 1 (Fig. 10 ▸). The crystal packing of 4 shows that the anions are completely separated by cations and there are no anion–anion contacts in the structure (Fig. 11 ▸). In comparison to 3, 4 has twice as many anion–cation contacts involving the F atoms of the anion, ranging from 2.279 (2) to 2.494 (2) Å. The average H⋯F distance in 4 is 2.391 (2) Å, similar to 3 [2.394 (2) Å]. The environment of the pyridine N atom is quite different compared to 3. Unlike in 3, which had close contacts between the pyridine N atom and two α-H atoms of the cation, the pyridine N atom in 4 only forms one close contact to a methyl H atom on the cation, with an N⋯H distance of 2.654 (2) Å.
Figure 10.

The asymmetric unit of 4. H atoms have been omitted from the cation for clarity.
Figure 11.
A 3×3×3 packed unit cell of 4, viewed along the a axis. The image on the right is the same view with the cations hidden.
Tetraphenylphosphonium salts
Compounds 5 and 6 contain the tetraphenylphosphonium (PPh4+) cation. The 3-pyridyl trifluoroborate salt 5 crystallized in the monoclinic space group Pc with Z′ = 1 (Fig. 12 ▸). The crystal packing of 5 shows a layer-like structure, with the ions arranged such that the cations and anions form alternating rows parallel to the b and c axes, alternating along the a axis of the crystal (Fig. 13 ▸). As with compound 4, the anions are completely separated by cations in the crystal packing and there are no close contacts between the anions in 5. There are eight cation–anion contacts involving the F atoms of the anion ranging from 2.122 (2) to 2.480 (3) Å, with an average distance of 2.310 (3) Å, a shorter average distance than for the two TBA salts. The pyridine N atom of the anion has four close contacts with H atoms on different cations. Of these, the contacts with the ortho-H atom on C29 and the meta-H atom on C20 are in a position such that they are likely interacting with the lone electron pair of the pyridine N atom, while the other two contacts are on the face of the pyridine ring and are likely C—H⋯π contacts. Of the contacts likely involving the N-atom lone pair, the contact with the ortho-H atom [2.591 (3) Å] is shorter than that of the meta-H atom [2.699 (3) Å], consistent with computations that suggest the ortho-H atoms of PPh4-derived cations are the preferred site for interactions with anions (Dempsey & Kass, 2022 ▸).
Figure 12.

The asymmetric unit of 5. H atoms have been omitted from the cation for clarity.
Figure 13.
A 3×3×3 packing diagram of salt 5, viewed along the crystallographic b axis. The image on the right shows the same view with the cations hidden.
The 4-pyridyl analogue 6 crystallized in the triclinic space group P1 with Z′ = 2 (Fig. 14 ▸). There are two unique ion pairs in the unit cell that are distinguished by the suffixes A and B. The anions are arranged such that one anion has the pyridine N atom oriented in the direction of the positive a axis, while the other has the pyridine N atom oriented in the direction of the negative c axis, forming alternating rows of anions (Fig. 15 ▸). There is a single anion–anion contact in the packing of 6, with the anions linked by a single 2.657 (6) Å C—H⋯F contact between a meta-H atom on anion A with an F atom on anion B (Fig. 16 ▸). Anion A has ten cation–anion contacts involving the F atoms of the anion ranging from 2.216 (5) to 2.626 (4) Å, with an average contact distance of 2.427 (4) Å. Anion B has eight analogous contacts ranging from 2.296 (3) to 2.620 (3) Å, with a slightly longer average contact distance of 2.459 (4) Å. The pyridine N atoms of the two anions in the structure differ slightly in their crystallographic environments. Anion A has three close contacts between the pyridine N atom and three different cations. Only one of these, the 2.566 (5) Å contact with the meta-H atom on C26A, is positioned in such a way that the H atom is able to interact with the lone pair of the pyridine N atom. The other two C—H⋯N interactions occur on the ‘face’ of the N atom and are likely electrostatic in nature rather than a hydrogen bond, but it should be noted that the contact with the para-H atom on C9A is the shortest of the three contacts at 2.494 (5) Å. Anion B only forms two contacts with the pyridine N atom. In this case, both contacts are positioned in such a way that the H atom could be interacting with the lone pair of the pyridine N atom. The shortest contact is with the ortho-H atom of C13A at a distance of 2.463 (7) Å, while the second is much longer at 2.780 (6) Å with the para-H atom of C15B.
Figure 14.
The asymmetric unit of 6. H atoms have been omitted from the cations for clarity.
Figure 15.
A 3×3×3 packing diagram of salt 6, viewed along the crystallographic c axis. The image on the right shows the same view with the cations hidden.
Figure 16.

Close contacts between anions in 6.
Tetrakis(3,5-dimethoxyphenyl)phosphonium salts
Compounds 7 and 8 contain the tetrakis(3,5-dimethoxyphenyl)phosphonium cation (MeO-Phos). The 3-pyridyl borate salt 7 crystallized in the space group P21/n with Z′ = 1 (Fig. 17 ▸). Similar to salt 3, the crystal packing of 7 shows a channel motif, where anions form channels that are separated by cations (Fig. 18 ▸). These channels run roughly parallel to the b axis and layers of cations and anions alternate along the crystallographic a and c axes. Within each channel the anions are linked via a short contact of 2.480 (3) Å between the meta-H atom of the anion and an F atom of an adjacent anion. The result of this is a one-dimensional polymeric chain of anions (Fig. 19 ▸). This polymeric structure of the anion channels is quite different from the structure of the anion channels in 3, where the channels were formed by repeating units of anion dimers. There is a total of seven cation–anion contacts involving the F atoms of the anions. These contacts range in length from 2.287 (2) to 2.627 (3) Å, with an average length of 2.429 (3) Å, a similar average length to anion A in 6 [2.427 (4) Å]. The pyridine N atom of the anion in 7 forms three close contacts with two different cations. Like in anion A of salt 6, two of the contacts formed in 7 occur towards the faces of the pyridine ring. Both of these contacts are with methyl H atoms of the cation, and these contacts are both long, with lengths of 2.836 (3) and 2.778 (3) Å. The third contact is between N1 and the H atom on para atom C26 of the cation. This H atom is directly in line with the N-atom lone pair and forms a short C—H⋯N contact of 2.250 (3) Å.
Figure 17.
The asymmetric unit of 7. H atoms have been omitted from the cation for clarity.
Figure 18.
The left image shows a 3×3×3 packing diagram of salt 7, viewed along the crystallographic b axis. The image on the right shows the same view with the cations hidden.
Figure 19.
Anion–anion contacts present in salt 7.
The 4-pyridyl borate analogue 8 crystallized in the triclinic space group P
with Z′ = 2 as a non-merohedral twin with two twin domains of equal volume (Fig. 20 ▸). The packing in 8 shows a channel motif, with the anions forming one-dimensional ‘head-to-tail’ chains in the direction of the a axis, with adjacent layers of chains related by inversion symmetry (Fig. 21 ▸). The anions in the chains are linked by contacts between a meta-H atom of the pyridine ring with an F atom in the next anion. Like in 6, there are two unique cations and anions in the asymmetric unit of the crystal, differentiated by the suffixes A and B. The two unique anions alternate in the anion channel, exhibiting a polymeric structure like that seen in 7 (Fig. 22 ▸, bottom). Anion B is disordered and modeled in two parts, with an occupancy ratio of approximately 66:34 (Fig. 22 ▸, top). The primary difference between the two disordered anions is a rotation of the BF3 group. Anion A has eight cation–anion contacts involving the F atoms of the anion (Fig. 22 ▸, top). The contacts range from 2.260 (5) to 2.644 (5) Å, with an average length of 2.440 (5) Å. The two disordered parts of anion B differ in the number of contacts involving the F atoms of the anion. The majorly occupied portion of anion B also has eight contacts between the cations and the F atoms of the anion ranging from 2.210 (10) to 2.612 (7) Å, with an average length of 2.400 (8) Å, slightly shorter than the average distance for anion A. In the minorly occupied part of anion B, the BF3 group is rotated in such a way that atom F1B′ has no contacts with the cation, and overall, the number of cation contacts involving the F atoms of the anion has reduced to five, ranging from 2.299 (10) to 2.610 (10) Å, with an average distance of 2.486 (14) Å. Averaging the cation–fluorine contact distances for all three anions in 8 gives a distance of 2.442 (9) Å, slightly longer than the average distance in 7 [2.429 (3) Å]. Anion A shows three C—H⋯N contacts between the pyridine N atom and methyl groups on two cations. As seen in several of the other 4-pyridyl anions, two of the contacts [with methyl H atoms on C21B and C28A of 2.633 (5) and 2.797 (5) Å, respectively] are on the face of the pyridine ring, while the third contact, with a methyl H atom on C13B, is in a location such that it could be interacting with the pyridine lone pair. However, this contact is likely not a C—H⋯N hydrogen bond, as the contact is quite long [2.855 (5) Å] and the C—H⋯N angle is 100°, both factors suggesting this is a primarily electrostatic contact rather than a hydrogen-bonding interaction. The majorly and minorly occupied parts of disordered anion B have slightly different environments of the pyridine N atom. The majorly occupied part of anion B shows only two close contacts involving the pyridine N atom, one with a H atom on methyl atom C29A [2.74 (2) Å] and the other with the H atom on para atom C9A [2.661 (10) Å]. The contact with the para-H atom is in line with the lone pair of the pyridine N atom, while the contact with the methyl H atom occurs more on the face of the pyridine ring. The minorly occupied part of anion B has contacts with these same H atoms, although the pyridine N atom has shifted further from C29A and closer to C9A, resulting in new contact distances of 2.81 (4) Å for the methyl H atom on C29A and 2.411 (10) Å for the para-H atom on C9A. Additionally, the minorly occupied portion of anion B has contacts with two of the methyl H atoms of C13A [distances of 2.69 (4) and 2.67 (4) Å] with the pyridine N atom. The new C—H⋯N contacts occur on the face of the pyridine ring.
Figure 20.
The asymmetric unit of 8. Only the majorly occupied part of anion B is shown. H atoms have been omitted from the cations for clarity.
Figure 21.
The image on the left shows a 3×3×3 packing diagram of salt 8, viewed along the crystallographic a axis. Only the majorly occupied part of anion B is shown. The image on the right shows the same view with the cations hidden.
Figure 22.
(Top) A superposition of the two parts of the disordered anion in 8. (Bottom) The head-to-tail chain packing of the anions in 8. Only the majorly occupied part of anion B is shown.
Tetrakis[4-(dimethylamino)phenyl]phosphonium salts
Compounds 9 and 10 contain the tetrakis[4-(dimethylamino)phenyl]phosphonium cation (NMe2-Phos). Compound 9 crystallized in the monoclinic space group P21/n with Z′ = 1 (Fig. 23 ▸). Like compound 3, the anions in 9 crystallize as dimers across a crystallographic inversion center. The anion dimers are completely separated from other anion dimers by cations (Fig. 24 ▸). A close contact is made between the meta-H atom of one anion with an F atom of the inversion-related anion. The anion is disordered and modeled in two parts, each with 50% occupancy (Fig. 25 ▸, top). In the crystal structure, the disordered parts are differentiated by the addition of a prime (′) suffix to the second part. Because the anions have equal occupancy, the two anions will be referred to as the ‘primed’ and ‘unprimed’ anions. The anion dimers are related by an inversion center, however it is unlikely that the anions that are related directly by symmetry pack at the same time (i.e. the primed anion forming a dimer with the primed anion), as this results in a very close 1.67 (3) Å H⋯H contact between H5′ and it’s inversion-related equivalent (Fig. 25 ▸, middle). Instead, the packing most likely consists of the unprimed anion and the primed anion packed across the inversion center (Fig. 25 ▸, bottom). In this packing arrangement, the contact distance between H5 and H5′ is a more reasonable 2.12 (3) Å. The anions form a C—H⋯F contact of 2.63 (5) Å between the meta-H atom on C4 of the unprimed anion and F1′ of the primed anion. The major difference between the primed and unprimed anions is a rotation of the BF3 groups on the anions. The F atoms of the unprimed anion form six cation–anion contacts ranging from 2.165 (7) to 2.549 (5) Å, with an average length of 2.361 (5) Å. The F atoms of the primed anion also form six cation–anion contacts, ranging from 2.169 (9) to 2.565 (5) Å, with an average of 2.444 (13) Å. The average contact distance for both anions is 2.402 (9) Å. The two anions differ only slightly in the chemical environments of their pyridine N atoms. Both anions form C—H⋯N contacts with a methyl H atom on C21. The contact with the unprimed anion is shorter, with a distance of 2.521 (10) Å, while the contact with the primed anion is 2.81 (2) Å.
Figure 23.
The asymmetric unit of 9. H atoms have been omitted from the cation for clarity.
Figure 24.
A 3×3×3 packing diagram of salt 9, viewed along the crystallographic b axis. The image on the right shows the same view with the cations hidden. Only the unprimed anion is shown.
Figure 25.

(Top) A superposition of the two equally occupied disordered parts of the anion in 9. (Middle) The close contact between the primed anion and its inversion-related equivalent highlighting the unlikely 1.67 (3) Å H⋯H contact. (Bottom) A more realistic anion dimer between the primed and unprimed anions across the inversion center.
Two different crystals of compound 10 were obtained by evaporation from two different solvents. When DCM was used as a solvent, crystals of the neat salt were obtained in the monoclinic space group P21/n with Z′ = 1 (Fig. 26 ▸). The cation in the crystal structure is well resolved; however, the anion is severely disordered. The anion is modeled in three parts with approximate occupancies of 43.3, 33.2, and 23.5%. Because of the highly disordered nature of the anion, there is more uncertainty in the contact distances between the molecules in the crystal structure. The packing is very similar to what is seen in 9, with the anions packed in dimers related by inversion symmetry (Fig. 27 ▸). Like in 9, the disorder of the anion results in unrealistically close H⋯H contacts between anions across a crystallographic inversion center, and it is unlikely that anions directly related by inversion symmetry pack at the same time; however, any detailed analysis of the anion packing is hampered by the disorder. Treating all of the disordered parts of the anion as a whole, it can be seen that there are 25 contacts between the F atoms of the anion and H atoms of the cation, ranging in length from 2.097 (8) to 2.662 (8) Å, with an average contact distance of 2.421 (9) Å. The average overall anion-to-cation F⋯H contact distance is similar to what is seen in 9. There are only two contacts between the anion N and cation H atoms, with a length of 2.77 (2) Å for the contact between N1′ and methyl atom H28A, and 2.677 (8) Å for the contact between N1′′ and H32. The second contact occurs on the face of the pyridine ring.
Figure 26.
The asymmetric unit of 10. All parts of the disordered anion are shown superimposed. H atoms have been omitted from the cation for clarity.
Figure 27.
A 3×3×3 packed unit cell of 10. The image on the right has the cations hidden to highlight the dimer packing arrangement of the anions.
When crystals of 10 are grown by evaporation from acetone, the compound is obtained as a hemihydrate (10h) in the monoclinic space P21/n with Z′ = 1 (Fig. 28 ▸). The structure solution of this crystal form has both the cation and anion well resolved. Fig. 29 ▸ shows the packing of the crystal, viewed along the b axis. The anions form dimers linked by 2.02 (3) Å hydrogen bonds between the pyridine N atom and a single water molecule across a crystallographic inversion center, with the water molecule positioned on the inversion center. There are no contacts between anions. The F atoms of the anion form ten cation–anion contacts in the crystal structure. These contacts range in length from 2.308 (2) to 2.638 (3) Å, with an average of 2.482 (2) Å. This is the longest cation–anion H⋯F average distance of all the salts with organic cations; however, it is also the only salt to have cocrystallized water, which impacts the packing of the anion. The pyridine N atom primarily forms a hydrogen bond with the water molecule, but there is also a 2.595 (4) Å N⋯H contact with a methyl H atom on atom C37 of the cation.
Figure 28.
The asymmetric unit of 10h.
Figure 29.
A 3×3×3 packed unit cell of 10h, viewed along the crystallographic b axis. The image on the right has the cations hidden. Each water molecule shown has a 50% occupancy, leading to an overall anion–water stoichiometry of 2:1.
Trends in cation–anion N⋯H and F⋯H contacts for salts 3–10 and 10h
Because the potassium salts 1 and 2 are not soluble in low-polarity solvents such as DCM, they are not well suited for use as charge-enhanced catalysts and the focus of the upcoming analyses will be on the more soluble salts with organic cations (3–10 and 10h). Table 2 ▸ shows the number and average lengths of the cation–anion N⋯H and F⋯H contacts for each of the salts containing organic cations. For all of the salts, the F⋯H contacts were more numerous and shorter in length than the N⋯H contacts. Examining the N⋯H contacts (excluding 10h, in which the sole N⋯H contact of the anion is with the cocrystallized water molecule), it can be seen that 3 has the shortest observed N⋯H contact at 2.583 (2) Å. Salt 10 has the longest N⋯H contact distance at 2.726 (14) Å (averaged across all parts of the disordered anion). Arranging the salts by average N⋯H contact distance gives the following order: 3 < 6 < 7 < 4 < 9 < 5 < 8 < 10; however, it should be noted that the average lengths for salts 4 and 9, 6 and 7, and 8 and 10 have values that overlap when uncertainties are taken into consideration. For the F⋯H contact distances, salt 5 has the shortest average distance at 2.310 (3) Å. The longest average F⋯H contact distances are in 10h; however, the presence of the water molecule precludes this compound from direct comparison to the others. Ordering the salts by average F⋯H contact distance gives: 5 < 4 < 3 < 9 < 10 < 7 < 8 < 6 < 10h, noting that salts 3 and 4, 9, 6, and 8, and 7 and 10 have values that overlap when considering uncertainties. Across salts with the same cation, the position of the N atom in the pyridine ring of the anions has only a small effect on the average N⋯H contact distance for most of the salts, with the largest difference being seen in the MeO-Phos salts 7 and 8, which differ by 0.092 (9) Å. Examining the F⋯H contacts of the 3- and 4-pyridyl trifluoroborate anions with the same cation, it is found that the position of the pyridine N atom on the anion has little effect on the average F⋯H contact length of the TBA salts (3 and 4), the MeO-Phos salts (7 and 8), and the neat NMe2-Phos salts (9 and 10). There is a significant difference between the PPh4 salts 5 and 6, with the average F⋯H contact distance being 0.132 (4) Å shorter in the 3-pyridyl salt 5 compared to the 4-pyridyl analogue 6. The average F⋯H contact distance difference between 10 and 10h is 0.061 (10) Å. Overall, there are no significant trends between the position of the pyridine N atom or the identity of the cation on the average lengths of the N⋯H and F⋯H contacts in the crystal structures containing organic cations.
Table 2. The number and average lengths of cation–anion N⋯H and F⋯H contacts for each of the salts containing organic cations.
| Salt | Number of N⋯H contacts | Average N⋯H contact distance (Å) | Number of F⋯H contacts | Average F⋯H contact distance (Å) |
|---|---|---|---|---|
| 3 | 2 | 2.596 (3) | 4 | 2.394 (2) |
| 4 | 1 | 2.654 (2) | 8 | 2.391 (2) |
| 5 | 4 | 2.670 (4) | 9 | 2.310 (3) |
| 6 | 5a | 2.612 (6)b | 18a | 2.442 (4)b |
| 7 | 3 | 2.621 (3) | 8 | 2.429 (3) |
| 8 | 9a,c | 2.713 (9)b,d | 21a,c | 2.441 (8)b,d |
| 9 | 2c | 2.665 (15)d | 12c | 2.402 (9)d |
| 10 | 2c | 2.726 (14)d | 21c | 2.421 (9)d |
| 10h | 1 | 2.595 (2) | 10 | 2.482 (4) |
Notes: (a) the total number of contacts across both anions; (b) the average value across both anions; (c) the total number of contacts between all parts of the disordered anion; (d) the average values between all parts of the disordered anion.
Hirshfeld surface analysis
Hirshfeld surface analysis offers a unique way to visualize the chemical environment of different molecules within a crystal (Spackman & Jayatilaka, 2009 ▸; Spackman et al., 2021 ▸). Briefly, Hirshfeld surfaces are a means by which the electron density of the crystal is broken down into the contributions from each of the molecules within the crystal. The distances of atoms to the Hirshfeld surface of a molecule can be plotted for atoms both inside (di) and outside (de) of the surface to provide a unique plot, called a fingerprint plot, for each molecule in a crystal structure. ‘Spikes’ in the direction of the lower left portion of the fingerprint plots (i.e. small di/de distances) indicate the presence of close contacts between atoms inside and outside of the Hirshfeld surface, corresponding to close contacts between atoms in different molecules. Fingerprint plots are colored ranging from blue to green to red by the number of contributing points of the Hirshfeld surface to the particular di/de distance, with blue points having few contributions and red points having many. Fingerprint plots can be divided to show the types of intermolecular contacts contributing to the surface and the percentage that each contact type contributes to the overall surface. Fig. 30 ▸ shows the fingerprint plots for the anions of salts 3–10 and 10h. In the cases where the anion was disordered, all parts of the disordered anion were treated as one to generate a single Hirshfeld surface. While the fingerprint plots for each anion are unique, there is little difference in the fingerprint plots between the 3- and 4-pyridyl trifluoroborate anions when paired with the same cation, particularly in the region of small di/de values that correspond to close contacts between ions. Of these, the anions that appear the most different are 9, 10, and 10h. The fingerprint plots of compounds 9 and 10 are similar, with both showing a sharp spike terminating in the 0.8/0.8 Å di/de region (9) and the 0.6/0.86 Å di/de region (10) (Fig. 30 ▸, bottom row, left and middle). These spikes are a result of unrealistic H⋯H contacts across the inversion center resulting from the disordered anions discussed in Section 3.5. Salt 10h shows a spike terminating in the 1.2/0.8 Å di/de region that corresponds to the hydrogen bond between the anion and the water molecule (Fig. 30 ▸, bottom row, right). Because of the presence of the cocrystallized water in 10h, it is not surprising to see a large difference between this fingerprint plot and those of the neat forms 9 and 10. Table 3 ▸ shows the breakdown of the major contributions of different types of contacts to the Hirshfeld surface of each anion. The Hirshfeld surfaces of the tetrabutylammonium salts 3 and 4 have roughly the same N⋯H and C⋯H contributions, while the 4-pyridyl analogue has about 4% fewer F⋯H and 4% more H⋯H contacts. For the PPh4 salts 5 and 6, there is very little difference in the amount that each type of contact contributes to the Hirshfeld surface, with the differences in the amount of each type of contact not exceeding 2.1%. The MeO-Phos salts 7 and 8 likewise show little difference in their Hirshfeld surface composition, with similar N⋯H and O⋯H contributions. The 4-pyridyl borate anions in 8 have slightly higher F⋯H contributions. Salt 7 and anion A of 8 have similar 14.6 and 13.2% C⋯H contributions, and 33.0 and 34.0% H⋯H contributions, respectively.
Figure 30.
The Hirshfeld surface fingerprint plots for the anions in salts 3–10 and 10h.
Table 3. Contributions (%) of selected contacts to the Hirshfeld surfaces for all of the anions.
Minor contributors have been omitted, leading to a <100% sum of contributions for some of the anions.
| Contribution to anion Hirshfeld surface | |||||
|---|---|---|---|---|---|
| Salt | F⋯H | N⋯H | C⋯H | H⋯H | O⋯H |
| 3 | 40.3 | 8.8 | 13.5 | 37.4 | NA |
| 4 | 36.2 | 9.2 | 13.6 | 41.0 | NA |
| 5 | 35.8 | 8.8 | 23.4 | 31.6 | NA |
| 6, Anion A | 35.6 | 8.4 | 22.7 | 32.2 | NA |
| 6, Anion B | 34.0 | 9.1 | 21.3 | 31.6 | NA |
| 7 | 35.5 | 8.7 | 14.6 | 33.0 | 4.4 |
| 8, Anion A | 38.7 | 8.0 | 13.2 | 34.0 | 4.1 |
| 8, Anion B | 37.4 | 8.6 | 17.6 | 29.3 | 4.3 |
| 9 | 39.3 | 9.0 | 14.0 | 37.0 | NA |
| 10 | 38.8 | 6.8 | 16.0 | 37.5 | NA |
| 10h | 35.4 | 8.6 | 17.9 | 37.9 | 0.2 |
Anion B of 8 is the most different in this regard with 17.6% C⋯H and 29.3% H⋯H contributions. The environments of the anions in the NMe2-Phos salts are again quite similar, with the biggest differences being in the N⋯H (9.0% for 9 and 6.8% for 10) and C⋯H (14.0% for 9 and 16.0% for 10) regions. Comparing salt 10 to 10h, there is a fairly large difference in the F⋯H contributions, with 10h having a smaller surface by 3.4%. Salt 10h has an approximately 2% larger contribution of both N⋯H and C⋯H contacts compared to 10.
Examining how the identity of the cation affects the Hirshfeld surface compositions, it can be seen that the average contributions of F⋯H and N⋯H contacts to the Hirshfeld surfaces are similar, with F⋯H contacts accounting for 38.3, 35.1, 37.2, and 37.8%, and N⋯H contacts accounting for 9.0, 8.8, 8.4, and 8.1% for the TBA, PPh4, MeO-Phos, and NMe2-Phos salts, respectively. On average, the PPh4 salts have a higher C⋯H contribution of 22.5% compared to 13.6, 15.1, and 16.0% for the TBA, MeO-Phos, and NMe2-Phos salts, respectively. The TBA salts have the largest average contributions of H⋯H contacts at 39.2%, followed closely by 37.5% for the NMe2-Phos salts. In comparison, the MeO-Phos and PPh4 salts have lower H⋯H contacts at 32.1 and 31.8% for the MeO-Phos and PPh4 salts, respectively. The MeO-Phos salts contain an average of 4.3% O⋯H contributions to the surface, contributions that are not present in the TBA salts, the PPh4 salts, and salt 9, and only offer a very minor 0.2% contribution in 10h due to the cocrystallized water. In summary, it can be seen that the position of the pyridine N atom has little effect on the overall environment of the anions across the salts, regardless of the cation, and that changing the cation primarily affects the amount of C⋯H and H⋯H contacts for the anions.
Comparisons to reactivity
In contrast to polar solvents, where ion pairs exist primarily as solvated ‘free’ ions, ionic compounds in non-polar solvents exist primarily as ion pairs or higher-order aggregates, especially as the concentration of the salt increases (Marcus & Hefter, 2006 ▸). Interactions between the anions and cations in the crystalline state may be present in the solvated ion pairs and have a correlation to the reactivity of the salts. The nucleophilicity for each of the salts was evaluated by comparing the pseudo-first-order rate constants of the SN2 reaction between each salt and 1-iodooctane in dichloromethane (Fig. 31 ▸). Given the low dielectric constant of the solvent, it is not unreasonable to expect that the salts exist as ion pairs or higher-order aggregates while in solution, with contacts between the ions possibly affecting the reactivity of the salts. As such, it is worthwhile to investigate if trends exist between the crystallographic environment of the anions and their nucleophilicity. Salts 3 and 4 were evaluated previously using this reaction (Dempsey, Lovstedt et al., 2023 ▸), although the concentrations of reagents are slightly different in this work. The neutral nucleophiles pyridine and DMAP were also evaluated in this manner. Table 4 ▸ gives the reaction rate constants and relative rates for pyridine, DMAP, and salts 3–10. Salts 1 and 2 are insoluble in DCM and as a result could not be evaluated.
Figure 31.
The model SN2 reaction for evaluating the nucleophilicity of the 3-pyridyl trifluoroborate salts. The 4-pyridyl trifluoroborate salts were evaluated in the same manner.
Table 4. Pseudo-first-order reaction-rate constants and relative rates for each compound in the model SN2 reaction at 298 K.
| Compound | k (min−1) | k (relative to pyridine) |
|---|---|---|
| Pyridine | 0.000259 | 1.0 |
| DMAP | 0.00171 | 6.6 |
| 3 | 0.00488 | 18.9 |
| 4 | 0.00254 | 9.8 |
| 5 | 0.00698 | 26.9 |
| 6 | 0.00237 | 9.1 |
| 7 | 0.00661 | 25.5 |
| 8 | 0.00420 | 16.2 |
| 9 | 0.00727 | 28.1 |
| 10 | 0.00502 | 19.4 |
DMAP showed a moderate 6.6-fold rate increase over pyridine. All of the anionic catalysts had a faster rate that DMAP, however, the difference in reaction rates is small, with the fastest reacting salt 9 having a rate about four times greater than DMAP. Consistent with previous work (Dempsey, Lovstedt et al., 2023 ▸), the 3-pyridyl trifluoroborate anions were all more reactive than their 4-pyridyl analogues. Salt 3 was the slowest reacting 3-pyridyl trifluoroborate salt, while the other three 3-pyridyl trifluoroborate salts 5, 7, and 9 all had roughly the same rates. Interestingly, the trend is quite different for the 4-pyridyl trifluoroborate anions. For these anions, the TBA salt 4 and PPh4 salt 6 had roughly the same rates, while the MeO-Phos salt 8 and NMe2-Phos salt 10 exhibited faster rates. Salt 10 was about as reactive as 3, while 4 reacted about half as fast as 3. Fig. 32 ▸ shows plots of k versus average N⋯H and F⋯H contact distances, as well as F⋯H, N⋯H, C⋯H, and H⋯H Hirshfeld surface contributions. It is clear that no trend exists between the reactivity of the salts and the selected crystallographic properties. Thus, at least in the case of the pyridyl trifluoroborate salts and model SN2 reaction examined in this study, no correlations are observed between solid-state crystal packing and solution-state reactivity.
Figure 32.
The plots of k versus various crystallographically determined parameters. The Hirshfeld surface contributions for 6 and 8 are the average across both anions.
Conclusion
This work examined the trends between the crystal structures and nucleophilicity of several 3- and 4-pyridyl trifluoroborate salts with an assortment of cations. For the salts with organic cations, it was found that the identity of the cation and the position of the N atom on the pyridine ring changed the manner in which the anions packed within the crystals, and that the lengths and number of N⋯H and F⋯H contacts did not show any trend with the position of the pyridine N atom or the identity of the cation. Hirshfeld surfaces were used to probe the total crystallographic environments of the anions across the salts, and it was determined that the position of the pyridine N atom had little effect on the overall environment of the anions across the salts regardless of the cation, and that changing the cation had primarily affected the amount of C⋯H and H⋯H contacts for the anions. The nucleophilicity of the salts with organic cations was determined using a model SN2 reaction, and all of the anionic salts showed moderate rate increases over pyridine, with the 3-pyridyl trifluoroborate anions being more reactive than their 4-pyridyl counterparts. The effect of the counter-ion on the reactivity of the salts was different between the 3- and 4-pyridyl anions, suggesting that cation coordination behavior is dependent on the identity of the anion. Lastly, it was determined that cation–anion N⋯H and F⋯H contact lengths and anion Hirshfeld surface compositions had no correlation to the reactivity of the salts.
Related literature
The following references are cited in the supporting information for this article: Batey & Quach (2001 ▸); Li et al. (2009 ▸); Petruzziello et al. (2013 ▸); Van Geet (1970 ▸).
Supplementary Material
Crystal structure: contains datablock(s) 5, 6, 9, 7, 10h, 8, 4, 1, 2, 3, 10, global. DOI: 10.1107/S2053229625010629/dg3080sup1.cif
Structure factors: contains datablock(s) 5. DOI: 10.1107/S2053229625010629/dg30805sup6.hkl
Structure factors: contains datablock(s) 6. DOI: 10.1107/S2053229625010629/dg30806sup7.hkl
Structure factors: contains datablock(s) 8. DOI: 10.1107/S2053229625010629/dg30808sup9.hkl
Structure factors: contains datablock(s) 4. DOI: 10.1107/S2053229625010629/dg30804sup5.hkl
Structure factors: contains datablock(s) 1. DOI: 10.1107/S2053229625010629/dg30801sup2.hkl
Structure factors: contains datablock(s) 2. DOI: 10.1107/S2053229625010629/dg30802sup3.hkl
Structure factors: contains datablock(s) 3. DOI: 10.1107/S2053229625010629/dg30803sup4.hkl
Structure factors: contains datablock(s) 10. DOI: 10.1107/S2053229625010629/dg308010sup11.hkl
Supporting information file. DOI: 10.1107/S2053229625010629/dg30805sup17.cml
Supporting information file. DOI: 10.1107/S2053229625010629/dg30806sup18.cml
Supporting information file. DOI: 10.1107/S2053229625010629/dg30809sup21.cml
Supporting information file. DOI: 10.1107/S2053229625010629/dg30807sup19.cml
Supporting information file. DOI: 10.1107/S2053229625010629/dg308010hsup23.cml
Supporting information file. DOI: 10.1107/S2053229625010629/dg30808sup20.cml
Supporting information file. DOI: 10.1107/S2053229625010629/dg30804sup16.cml
Supporting information file. DOI: 10.1107/S2053229625010629/dg30801sup13.cml
Supporting information file. DOI: 10.1107/S2053229625010629/dg30802sup14.cml
Supporting information file. DOI: 10.1107/S2053229625010629/dg30803sup15.cml
Supporting information file. DOI: 10.1107/S2053229625010629/dg308010sup22.cml
Supporting information file. DOI: 10.1107/S2053229625010629/dg3080sup24.pdf
Acknowledgments
The authors would like to acknowledge Dr Victor Young Jr of the University of Minnesota X-ray crystallography laboratory for his assistance and insight in the collection and processing of the crystallographic data.
Funding Statement
Funding for this research was provided by: National Science Foundation, Directorate for Mathematical and Physical Sciences (award No. CHE-2346852).
Conflict of interest
The authors declare no conflicts of interest.
Data availability
The crystallographic information files for structures 1–10 and 10h are available in the supporting information and from the Cambridge Crystallographic Data Centre (CCDC). The CCDC deposition numbers for each crystal structure, kinetics, NMR, and additional crystallographic information can be found in the supporting information for this article.
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) 5, 6, 9, 7, 10h, 8, 4, 1, 2, 3, 10, global. DOI: 10.1107/S2053229625010629/dg3080sup1.cif
Structure factors: contains datablock(s) 5. DOI: 10.1107/S2053229625010629/dg30805sup6.hkl
Structure factors: contains datablock(s) 6. DOI: 10.1107/S2053229625010629/dg30806sup7.hkl
Structure factors: contains datablock(s) 8. DOI: 10.1107/S2053229625010629/dg30808sup9.hkl
Structure factors: contains datablock(s) 4. DOI: 10.1107/S2053229625010629/dg30804sup5.hkl
Structure factors: contains datablock(s) 1. DOI: 10.1107/S2053229625010629/dg30801sup2.hkl
Structure factors: contains datablock(s) 2. DOI: 10.1107/S2053229625010629/dg30802sup3.hkl
Structure factors: contains datablock(s) 3. DOI: 10.1107/S2053229625010629/dg30803sup4.hkl
Structure factors: contains datablock(s) 10. DOI: 10.1107/S2053229625010629/dg308010sup11.hkl
Supporting information file. DOI: 10.1107/S2053229625010629/dg30805sup17.cml
Supporting information file. DOI: 10.1107/S2053229625010629/dg30806sup18.cml
Supporting information file. DOI: 10.1107/S2053229625010629/dg30809sup21.cml
Supporting information file. DOI: 10.1107/S2053229625010629/dg30807sup19.cml
Supporting information file. DOI: 10.1107/S2053229625010629/dg308010hsup23.cml
Supporting information file. DOI: 10.1107/S2053229625010629/dg30808sup20.cml
Supporting information file. DOI: 10.1107/S2053229625010629/dg30804sup16.cml
Supporting information file. DOI: 10.1107/S2053229625010629/dg30801sup13.cml
Supporting information file. DOI: 10.1107/S2053229625010629/dg30802sup14.cml
Supporting information file. DOI: 10.1107/S2053229625010629/dg30803sup15.cml
Supporting information file. DOI: 10.1107/S2053229625010629/dg308010sup22.cml
Supporting information file. DOI: 10.1107/S2053229625010629/dg3080sup24.pdf
Data Availability Statement
The crystallographic information files for structures 1–10 and 10h are available in the supporting information and from the Cambridge Crystallographic Data Centre (CCDC). The CCDC deposition numbers for each crystal structure, kinetics, NMR, and additional crystallographic information can be found in the supporting information for this article.
























