Abstract
Protein interacting with C kinase 1 (PICK1) interacts with a variety of membrane proteins and receptors involved in nervous system diseases and multiple cancers. However, the role of PICK1 in gastric cancer remains unclear. In the present work, we explored the expression and interactions of PICK1 with Toll-like receptor 4 (TLR4) in gastric cancer. Clinical data analysis showed that PICK1 expression decreases and is predictive of worse outcomes in patients with gastric cancer. High PICK1 levels attenuate the proliferation and migration of gastric cancer cells, which is dependent on the TLR4/myeloid differentiation primary response 88 (MyD88) signaling pathway. Furthermore, in vitro experiments demonstrated that PICK1 affects the trafficking and degradation of TLR4 and promotes TLR4 degradation via autophagy in gastric cancer cells. Molecular dynamics simulations highlighted the binding strength and stability of the TLR4-PICK1 complex. Our study provides new insights into the cellular and pathological functions of PICK1 in gastric cancer.
Keywords: Protein interacting with C kinase 1 (PICK1), Gastric cancer, Toll-like receptor 4 (TLR4), Myeloid differentiation primary response 88 (MyD88) signaling pathway, Autophagy
Abstract
蛋白激酶C相互作用蛋白1(PICK1)与多种参与神经系统疾病和多种癌症的膜蛋白和受体存在相互作用。然而,PICK1在胃癌中的作用仍不清楚。本研究旨在探讨PICK1在胃癌中的表达以及与Toll样受体4(TLR4)的相互作用。临床数据分析显示,肿瘤部位PICK1表达水平下降,可预测胃癌患者不良预后。高表达PICK1可抑制胃癌细胞的增殖和迁移,该作用依赖于TLR4/MyD88信号通路。此外,体外实验表明,PICK1影响TLR4的转运和降解,并通过自噬促进胃癌细胞中TLR4的降解。分子动力学模拟强调了TLR4-PICK1复合物的结合强度和稳定性。本研究为阐明PICK1在胃癌中的细胞和病理功能提供了新的见解。
Keywords: 蛋白激酶C相互作用蛋白1(PICK1), 胃癌, Toll样受体4(TLR4), MyD88信号通路, 自噬
1. Introduction
Gastric cancer, which occurs in the digestive tract, is the third leading cancer in the world in terms of mortality ( Siegel et al., 2023). Therapeutic strategies have advanced significantly in the past few years, including chemotherapy, radiotherapy, immunotherapy, and surgical resection; however, invasion and metastasis are still frequent and lead to poor outcomes in many patients ( Batista et al., 2013; Lee et al., 2013; Park and Chun, 2013; Stein et al., 2014). Therefore, it is necessary to investigate the mechanisms of gastric cancer, improve the diagnosis and prognosis of patients, and enhance prevention strategies.
Protein interacting with C kinase 1 (PICK1), a peripheral membrane protein comprising the PSD-95/Discs-large/Zona Occludens-1 (PDZ) and Bin/Amphiphysin/Rvs (BAR) domains, can bind to a variety of lipid molecules and membrane proteins ( Inoue, 2007; Hanley, 2008), such as acid-sensing ion channels, α-amino-3-hydroxy-5-methyl-4-isoxazolepropionicacid receptors, and erythblastic leukemia viral oncogene homolog 2/human epidermal growth factor receptor 2 (ErbB2/HER2) ( Xia et al., 1999; Jaulin-Bastard et al., 2001; Baron et al., 2002; Hanley and Henley, 2005; Lu and Ziff, 2005; Rocca et al., 2008). Abnormal expression of PICK1 in the brain has been shown to correlate with nervous system diseases, such as epilepsy, schizophrenia, and Parkinson’s disease ( Giros et al., 1996; Jones et al., 1998; Torres et al., 2001; Gainetdinov and Caron, 2003; Lorgen et al., 2017). Recent studies suggest the important role of PICK1 in cancer progression and metastasis. For instance, increased expression of PICK1 contributes to the growth and migratory potential of astrocytic tumor cells ( Cockbill et al., 2015). PICK1 is overexpressed in breast cancer and correlates with lymph node infiltration, tumor grade, and the expression of HER2/neu protein, indicating that it may serve as a prognostic biomarker and therapeutic target in invasive breast cancer ( Zhang et al., 2010). Our previous study showed that PICK1 is involved in epithelial–mesenchymal transformation (EMT) and inhibits the progression of gastric cancer ( Zhou et al., 2021); however, the details of this effect remain to be discovered.
Toll-like receptor 4 (TLR4) is a transmembrane pattern recognition receptor with an important role in innate and adaptive immune responses ( Pasare and Medzhitov, 2005). Recently, several studies have demonstrated the vital role of TLR4 in the initiation, metastasis, and progression of cancer ( Chen et al., 2008; Rakoff-Nahoum and Medzhitov, 2009). TLR4 is overexpressed in various solid tumors and cancer cell lines, such as colorectal, cervical, and breast cancers ( Wang et al., 2010; Chen et al., 2015; Zhang and Zhang, 2017). Yang et al. (2016) have shown that TLR4/nuclear factor-κB (NF-κB) signaling is associated with the survival of oral squamous cell carcinoma patients. Moreover, high expression levels of TLR4 are associated with gastric cancer progression ( Meliț et al., 2019). TLR4, a membrane protein, may contribute to the underlying mechanism of PICK1’s role in gastric cancer.
In the present study, we aimed to explore whether PICK1 protein is involved in the proliferation and migration of gastric cancer cells and whether it has an interaction with TLR4 in gastric cancer.
2. Materials and methods
2.1. Microarray data
The messenger RNA (mRNA) expression profiles and data were downloaded from the Gene Expression Omnibus database ( https://www.ncbi.nlm.nih.gov/geo), with 300 gastric cancer samples from the GSE62254 dataset and 200 from the GSE15459 dataset. Among these, eight unavailable samples were excluded from the GSE15459 dataset, leaving a total of 492 gastric cancer samples for analysis ( Zhou et al., 2021).
2.2. Clinical specimens
The clinical specimens were obtained from the Department of Gastroenterology, Zhejiang Provincial People’s Hospital and Shanghai Outdo Biotech Co., Ltd. ( https://www.superchip.com.cn).
2.3. Immunohistochemical analysis
Fifty-six human gastric samples derived from the HStmA180Su16 tissue microarray were used to detect PICK1 expression by immunohistochemical (IHC) analysis. Specific antibodies against PICK1 (1:2000 (volume ratio), HuaBio, Hangzhou, China) were employed to determine the staining density. Scores were calculated based on the staining intensity and percentage of positive tumor cells in the whole tissues, which were evaluated according to the Fromowitz standard. All staining results were assessed at 200× magnification, and at least three fields from each core were counted.
2.4. Cell culture and treatment
The human gastric cancer cell lines AGS (adenocarcinoma gastric cells; RRID: CVCL_0139), BGC-823 (bleeding gastric cancer-823; RRID: CVCL_3360), SGC-7901 (stomach gastric carcinoma cells-7901; RRID: CVCL_0520), HEK293T (human embryonic kidney 293T; RRID: CVCL_0063), and GES-1 (gastric epithelial cells-1; RRID: CVCL_EQ22) were purchased from the Chinese Academy of Sciences Cell Bank (Shanghai, China). All cells were grown in Dulbecco’s modified Eagle’s medium (DMEM; HyClone, Shanghai, China) supplemented with 10% (volume fraction) fetal bovine serum (FBS; Gibco, USA) and penicillin (100 U/mL)-streptomycin (0.1 mg/mL) in a cell incubator at 37 ℃ with 5% CO2. To construct stable PICK1-overexpressing (OV-PICK1) gastric cells, AGS cells were infected with OV-PICK1 or control lentivirus at a multiplicity of infection (MOI) of 5 according to the manufacturer’s instructions. After 24 h of infection, the cells were incubated with puromycin (5 µg/mL) for 10 d to select stably expressing cells. Lipopolysaccharide (LPS) extracted from Escherichia coli serotype O55:B5 (LPS O55:B5) (Sigma-Aldrich, Dorset, UK) was dispersed in phosphate-buffered saline (PBS) at 100 ng/mL. For the in vitro experiments, the cells were incubated with LPS for 2 h before further examination. The cells were incubated with FSC-231 (15 μmol/L; Merck, Shanghai, China), MG132 (1 μmol/L; Merck), and chloroquine (CQ) (30 μmol/L; Merck) for 24 h.
2.5. Cell growth and proliferation
The cell suspension was added to 96-well plates. After 24 h, the original culture medium in the well plate was replaced with 100 μL of cell counting kit-8 (CCK-8) solution (Vazyme, Nanjing, China) (culture medium:CCK-8 reagent=9:1 (volume ratio)). The cells were incubated for 2 h and the optical density (OD) value at 450 nm (OD450 nm) was measured by a microplate reader (Tecan, Männedorf, Switzerland).
The cell suspension was added to 6-well plates. After 10 d, the cells were washed with PBS. The cells were fixed with 4% (volume fraction) paraformaldehyde (Servicebio, Wuhan, China) for 15 min, then stained with crystal violet solution for 10 min and photographed.
2.6. Cell cycle fluorescence-activated cell sorting (FACS) analysis
The cell suspension was added to 12-well plates. After 24 h, serum-free medium was added for another 24 h to realize cell cycle synchronization. The treated cells were collected, fixed with pre-cooled 70% (volume fraction) ethanol, and then stained with propidium iodide (PI). The cell cycle was analyzed by flow cytometry (BD Biosciences, Franklin Lakes, NJ, USA).
2.7. Transwell migration assay
The treated AGS cell suspension was added to the upper chambers of 24-well plates (2×10 4 cells/well) with serum-free medium, while DMEM supplemented with 10% FBS was added to the lower chambers. After 24 h, the cells in the upper chambers were removed, and the cells passing through the membrane were fixed with 4% paraformaldehyde and stained with crystal violet solution. Images of cells were taken using a microscope (Nikon, Tokyo, Japan).
2.8. Scratch assay
The cell suspension was added to 6-well plates. Until the cells reached 90%–100% confluence, a 1-mm straight scratch on the wells was made using a sterile pipette tip, and 10 µg/mL mitomycin C (Sigma-Aldrich) was added for 1 h. The medium supplemented with low serum was added, and images of the scratches were captured at 0, 24, and 48 h. Images of cell migration were analyzed by ImageJ (National Institutes of Health, MD, USA), and wound healing ability was calculated and compared with the initial wound area.
2.9. Western blotting
Briefly, equal amounts (20–30 μg) of proteins were separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred onto polyvinylidene fluoride (PVDF) membrane (Millipore, Billerica, MA, USA). After blocking in 5% (0.05 g/mL) non-fat milk for 1 h, the membranes were incubated with primary antibodies overnight at 4 ℃, including anti-cyclin-dependent kinase 4 (anti-CDK4) (1:1000 (volume ratio, the same below), HuaBio), anti-CDK6 (1:1000, HuaBio), anti-PICK1 (1:2000, HuaBio), anti-TLR4 (1:1000, HuaBio), anti-glyceraldehyde-3- phosphate dehydrogenase (anti-GAPDH) (1:5000, HuaBio), anti-myeloid differentiation primary response 88 (anti-MyD88) (1:1000, CST, Massachusetts, USA), anti-phospho-NF-κB (1:1000, CST), and interleukin-12 (IL-12) (1:1000, CST). The membranes were subsequently incubated with horseradish peroxidase (HRP)- labeled secondary antibodies (1:3000, HuaBio) for 2 h. The protein bands were detected by enhanced chemiluminescence (ECL) reagent (Beyotime, Shanghai, China) and the Bio-Rad imaging system (Bio-Rad, California, USA).
2.10. Immunofluorescence
Plasmids encoding PICK1 and TLR4 were purchased from Addgene (MA, USA). HEK293T cells were transfected with the PICK1 and TLR4 plasmids using Lipofectamine 3000 (Invitrogen, Carlsbad, CA, USA) for 72 h, followed by immunofluorescence staining. Briefly, HEK293T cells were fixed with 4% paraformaldehyde for 10 min and the cell membranes were permeabilized with 0.2% (volume fraction) Triton X-100 for 15 min. Then, the cells were blocked with 10% (0.1 g/mL) bovine serum albumin (BSA) and incubated with primary anti-PICK1 (1:500, NeuroMab, Davis, CA, USA) or anti-TLR4 (1:500, Abcam, Cambridge, UK) overnight at 4 ℃, followed by incubation with solution of secondary antibodies (Thermo Fisher Scientific, Rockford, IL, USA) for 1 h. 4',6-Diamidino-2-phenylindole (DAPI) was used for staining the cell nuclei. Finally, the fluorescent signals of cells were observed and captured using a confocal microscope (Leica SP8, Germany).
2.11. Co-immunoprecipitation
HEK293T cells were lysed in the immunoprecipitated radioimmunoprecipitation assay (IP-RIPA) buffer (Beyotime) and centrifuged at 16 000 g at 4 ℃ for 12 min. The protein concentration was detected using a bicinchoninic acid (BCA) kit (Thermo Fisher Scientific). To detect the interaction between PICK1 and TLR4, the cell lysates were incubated overnight at 4 ℃ with negative control immunoglobulin G (IgG) (Invitrogen) or anti-PICK1 antibody, anti-TLR4 antibody, and protein A-Sepharose 4B beads (GE Healthcare, Pittsburgh, PA, USA). Proteins on the beads were collected using 2× SDS sample buffer, and finally boiled at 100 ℃ for 5 min prior to a western blotting test.
2.12. Surface plasmon resonance
Surface plasmon resonance (SPR) experiments were performed using a Biacore-8K (Cytiva, Massachusetts, USA). PICK1 proteins were immobilized on a CM5 chip (Cytiva) using the amino coupling method. TLR4 proteins were diluted from 100 to 50, 25, 12.5, 6.25, 3.12, and 1.56 nmol/L by 5% (volume fraction) dimethyl sulfoxide (DMSO) or PBS and injected into the flow cell at a flow rate of 30 µL/min. The contact time was 180 s and the dissociation time was 300 s. The results were analyzed using Biacore evaluation software (Wuhan, China).
2.13. Molecular dynamics simulations
Molecular dynamics (MD) simulations were conducted to evaluate the interactions between PICK1 and TLR4 at the atomic level. The three-dimensional (3D) structures of PICK1 and TLR4 were obtained using UniProt codes Q9NRD5 and O00206, respectively. They were optimized using Alphafold2 ( Vani et al., 2024), followed by the University of California San Francisco (UCSF) chimeras to remove water molecules and unrelated heteroatoms ( Bedart et al., 2022). All MD simulations were performed using Gromacs 5.1.5 (GNU General Public License, Groningen, the Netherlands). The temperature (298.15 K), pH (7), and pressure (1 bar per atmosphere (atm); 1 bar=100 kPa, 1 atm=101.325 kPa) were selected to build the all-atom model system with the AMBEff14SB position parameters ( Bedart et al., 2022). TIP3P was used for the water molecular simulations ( Mohammadi et al., 2023). After 1000 ps of energy minimization, the system was balanced within the nucleus ventralis tuberis (NVT) and nucleus posterior tuberis (NPT) procedures. We performed 50 ns MD simulations, with 2 fs per step. After all simulations were completed, the gmx module was used to calculate the radius of gyration ( R g), hydrophobic contact, and root-mean-square deviation (RMSD).
2.14. Binding energy analysis
The binding energies between PICK1 and TLR4 were calculated using molecular mechanics with generalized Born and surface area solvation (MM/GBSA) implemented in the MMPBSA package ( Shoaib et al., 2023). In the MM/GBSA method, the binding-free energy (∆ G bind)=∆ H- T ∆S≈∆ G solv+∆ G gas- T ∆S, where gas-phase energy (Δ G gas) denotes the kinetic energy in vacuum before and after the binding, including internal energy ( E int), van der Waals energy ( E vdW), and electrostatic energy ( E elec); solvation-free energy (∆ G solv) is a solvent effect term, divided into the polar term polar solvation-free energy (Δ E GB) and the nonpolar term nonpolar solvation-free energy (∆ E surf); and - T ∆S denotes the entropy change, which reflects the energy loss caused by the flexibility or stability of the system, which was ignored in accordance with several studies ( Yan et al., 2020).
2.15. Statistical analysis
All data were presented as mean±standard deviation (SD). Statistical analyses were performed using unpaired Student’s t-tests in GraphPad Prism 9.0. The log-rank test and Kaplan-Meier analysis were carried out to analyze the differences in survival rates. P<0.05 was considered indicative of statistical significance.
3. Results
3.1. Expression of PICK1 in gastric cancer
We first detected PICK1 expression in several human gastric cells (SGC-7901, AGS, and BGC-823). As shown in Fig. 1a, human gastric cancer cells exhibited lower PICK1 levels than normal gastric cells (GES-1). Moreover, PICK1 was lowly expressed in human gastric tissues ( Fig. 1b). The information of the gastric cancer tissue samples is displayed in Table S1. Furthermore, we analyzed clinical data from 492 tumor cases taken from the GSE62254 and GSE15459 datasets (Table S2). Patients were grouped according to the optimal cut-off (Youden index) of PICK1 determined in our previous study ( Zhou et al., 2021). Kaplan-Meier survival analysis demonstrated that patients in the PICK1 low-expression group had a lower probability of survival than those in the high-expression group ( Fig. 1c). The IHC data showed that PICK1 expression was significantly lower in gastric cancer tissue samples (Figs. 1d and 1e), and PICK1 expression was correlated with lymph node metastasis and higher clinical stage ( Tables 1 and S3).
Fig. 1. Expression and Kaplan-Meier survival analysis of PICK1. (a) Western blot showing the expression of PICK1 in human normal gastric cells (GES-1) and gastric cancer cells (SGC-7901, AGS, and BGC-823). (b) PICK1 expression in gastric tissues. (c) Kaplan-Meier survival analysis of high and low expression of PICK1 in gastric tissues using the GSE62254 and GSE15459 datasets. (d, e) Immunohistochemical (IHC) analysis showing the expression of PICK1 in gastric tissue samples. (a, b) The data are represented as mean±SD, n ≥ 3. * P<0.05. SD: standard deviation; GES-1: gastric epithelial cells-1; SGC-7901: stomach gastric carcinoma cells-7901; AGS: adenocarcinoma gastric cells; BGC-823: bleeding gastric cancer-823; PICK1: protein interacting with C kinase 1; GAPDH: glyceraldehyde-3-phosphate dehydrogenase.
Table 1.
Correlations between the PICK1 expression level in gastric tumor samples and clinical pathological characteristics of the corresponding patients
| Characteristics | PICK1-low | PICK1-high | P value |
|---|---|---|---|
| Number | 30 ( | 26 ( | |
| Gender, n (%) | 0.678 | ||
| Male | 18 (32.1) | 17 (30.4) | |
| Female | 12 (21.4) | 9 (16.1) | |
| Age (years), n (%) | 0.560 | ||
| >60 | 21 (37.5) | 20 (35.7) | |
| ≤60 | 9 (16.1) | 6 (10.7) | |
| Tumor invasion, n (%) | 0.055 | ||
| T1+T2 | 1 (2.0) | 6 (11.8) | |
| T3+T4 | 27 (52.9) | 17 (33.3) | |
| Lymph node metastasis, n (%) | 0.019 * | ||
| N0+N1 | 8 (14.3) | 15 (26.8) | |
| N2+N3 | 22 (39.3) | 11 (19.6) | |
| Distant metastasis, n (%) | 1.000 | ||
| M0 | 27 (48.2) | 23 (41.1) | |
| M1 | 3 (5.4) | 3 (5.4) | |
| Clinical stage, n (%) | 0.003 * | ||
| Ⅰ+Ⅱ | 10 (17.9) | 19 (33.9) | |
| Ⅲ+Ⅳ | 20 (35.7) | 7 (12.5) |
PICK1: protein interacting with C kinase 1. * Low expression of PICK1 in gastric cancer tissues of patients was correlated with lymph node metastasis and tumor malignant progression.
3.2. Effects of PICK1 overexpression on the growth and cell cycle of gastric cancer cells
We next examined the biological effects of PICK1 overexpression in gastric cancer cells. As shown in Figs. 2a and 2b, we overexpressed PICK1 in AGS cells and validated its efficiency using western blotting. Notably, PICK1 overexpression significantly suppressed gastric cell growth (Figs. 2c and 2d). Flow cytometry revealed that the arrest of AGS cells at the G0/G1 phase was significantly promoted by PICK1 ( Figs. 2e and S1). Western blotting analysis revealed that the expression of CDK4 and CDK6 was inhibited by overexpressed PICK1 ( Fig. 2f).
Fig. 2. Effects of PICK1 overexpression on AGS cell growth and cell cycle arrest. (a) After cells were infected with PICK1 or control lentivirus, the fluorescence intensity was observed using confocal microscopy (Leica SP8, Germany). (b) Efficiency was validated using western blotting. (c) Cell colony formation. (d) Results of the CCK-8 assay show the viability of stable PICK1-overexpressing or control cells. (e) Results of cycle analysis using flow cytometry. (f) Western blot showing the expression of CDK4 and CDK6 in each group. The data are presented as mean±SD, n ≥ 3. * P<0.05. SD: standard deviation; PICK1: protein interacting with C kinase 1; mRNA: messenger RNA; GAPDH: glyceraldehyde-3-phosphate dehydrogenase; OD450 nm: optical density at 450 nm; CDK4: cyclin-dependent kinase 4; CDK6: cyclin-dependent kinase 6; CCK-8: cell counting kit-8.
3.3. Effects of PICK1 overexpression on migration and TLR4 protein expression of gastric cancer cells
Next, to investigate the effects of PICK1 overexpression on cell migration, we performed transwell and scratch assays. The results indicated that PICK1 overexpression significantly reduced the migratory ability compared to the control group (Figs. 3a and 3b). To determine the mechanisms of functional changes in gastric cells, we used western blotting to detect chronic inflammation in gastric cells. As shown in Figs. 3c and 3d, we found that the IL-12 protein expression level was lower in the PICK1 group. The TLR4/MyD88 signaling pathway is closely associated with chronic inflammation. The TLR4, MyD88, and phospho-NF-κB protein levels were significantly reduced by PICK1 overexpressed in AGS cells (Figs. 3c and 3d). Furthermore, we constructed the PICK1 PDZ-truncated plasmid, PICK mutant (Mut) (Fig. S2), and found that the PICK1 PDZ mutation had no significant effect on AGS cell proliferation, cell cycle, or TLR4 protein expression (Fig. S3). These results indicate that PICK1 plays an inhibitory role in the metastasis and inflammation of gastric cancer cells.
Fig. 3. Effects of PICK1 overexpression on cell migration and TLR4 protein expression in gastric cells. (a) Representative images of wound healing assays in AGS cells infected with the PICK1 or control lentivirus at 0, 24, and 48 h. (b) Transwell migration assay for the migratory capacity of AGS cells. (c, d) Relative protein levels of TLR4, MyD88, p-NF-κB, and IL-12 in AGS cells. The loading mode in the figure included two multiple holes. The data are presented as mean±SD, n ≥ 3. * P<0.05. SD: standard deviation; PICK1: protein interacting with C kinase 1; GAPDH: glyceraldehyde-3-phosphate dehydrogenase; TLR4: Toll-like receptor 4; MyD88: myeloid differentiation primary response 88; p-NF-κB: phospho-nuclear factor-κB; IL-12: interleukin-12.
3.4. Effects of PICK1 downregulation on proliferation and TLR4 protein expression in gastric cancer cells
Furthermore, we customized PICK1 small interfering RNA (siRNA) for the downregulation of PICK1 gene expression in AGS cells. The siRNA information is shown in Table S4, whereas Fig. 4a demonstrates the efficiency of PICK1 knockdown in AGS cells infected with siRNA for 24 h. The CCK-8 results indicated that AGS cell proliferation was enhanced after PICK1 gene downregulation ( Fig. 4b). In addition, the flow cytometry results showed that the proportion of AGS cells blocked in the G0/G1 phase was reduced in the SA, SB, and SC groups (three types of PICK1 siRNA) with a knockdown of PICK1 compared with the control group ( Fig. 4c). The protein expression levels of TLR4 and PICK1 were also examined. No significant changes in TLR4 protein levels occurred after knockdown of PICK1 expression, which may be due to the low expression of PICK1 protein in AGS cells, resulting in the failure of knockdown to significantly affect TLR4 protein expression ( Fig. 4d).
Fig. 4. Effects of downregulation of PICK1 gene in AGS cells. (a) PICK1 gene expression in AGS cells infected with SA, SB, and SC siRNAs for 24 h. (b) Growth curves of AGS cells infected with SA, SB, and SC siRNAs for 48 h. (c) Cell cycle of AGS cells infected with SA, SB, and SC siRNAs for 48 h. (d) TLR4 and PICK1 protein expression in AGS cells infected with SA, SB, and SC siRNAs for 48 h. The data are presented as mean±SD, n ≥ 3. * P<0.05; ** P<0.01; ns: no significant difference. SD: standard deviation; OD450 nm: optical density at 450 nm; PICK1: protein interacting with C kinase 1; TLR4: Toll-like receptor 4; GAPDH: glyceraldehyde-3-phosphate dehydrogenase; SA, SB, SC: PICK1 small interfering RNA (siRNA) (three types); mRNA: messenger RNA; PE-A: phycoerythrin-area.
3.5. Interaction between PICK1 and TLR4
The 3D structure of PICK1 bound to TLR4 is illustrated in Fig. 5a. It can be found that the folded area of PICK1 is combined with a semi-circular groove in TLR4, forming hydrogen bonds, pi-stacks, and salt bridges (Fig. S4). PICK1 could bind with TLR4; the confidence of Rank1 was greater than 0.9, and the docking fraction was -261.85 kcal/mol (Table S5). The immunoprecipitation results revealed the interaction between PICK1 and TLR4 ( Fig. 5b). Immunofluorescence using confocal microscopy ( Fig. 5c) showed that PICK1 and TLR4 were both expressed in HEK293T cells and displayed a diffuse pattern in the cytoplasm. SPR assay was performed to detect the direct interaction between PICK1 and TLR4 ( Fig. 5d), and the dissociation equilibrium constant ( K D) was 4.07 μmol/L. Furthermore, to investigate how PICK1 regulates TLR4 expression, PICK1-overexpressing AGS cells were treated with FSC-231 to suppress the PICK1 PDZ domain. As shown in Fig. 5e, FSC-231 treatment increased TLR4 expression. Moreover, when cells were treated with the autophagy activator MG132 and the autophagy inhibitor CQ, TLR4 expression was increased by CQ treatment ( Fig. 5f). These results demonstrate that PICK1 binds to TLR4 and promotes TLR4 degradation by autophagy in gastric cells.
Fig. 5. Interaction between PICK1 and TLR4. (a) 3D structure of PICK1 with TLR4. (b) PICK1 and TLR4 levels in HEK293T cell lysates were measured using western blotting after IP with mouse anti-PICK1 or rabbit anti-TLR4. (c) PICK1 and TLR4 were colocalized in the HEK293T cells, as demonstrated by immunofluorescence. (d) Direct interaction between PICK1 and TLR4 was confirmed using SPR analysis. (e) The protein expression level of TLR4 was detected with or without FSC-231 stimulation by western blotting. (f) Cells were preincubated with DMSO, MG132, and CQ, and the expression of TLR4 was assessed by western blotting. The data are presented as mean±SD, n ≥ 3. * P<0.05. SD: standard deviation; PICK1: protein interacting with C kinase 1; TLR4: Toll-like receptor 4; GAPDH: glyceraldehyde-3-phosphate dehydrogenase; SPR: surface plasmon resonance; IP: immunoprecipitation; IgG: immunoglobulin G; DMSO: dimethyl sulfoxide; CQ: chloroquine.
3.6. Binding energy of PICK1 and TLR4
We further calculated the binding energy of PICK1 to TLR4 using MD simulations ( Table 2). The structural characteristics of the complex in the 50 ns MD simulations are shown in Fig. 6a. It can be found that the number of hydrogen bonds increased most obviously from the original 2 to 22, and the number of salt bridges increased from 2 to 6 at the end of the MD simulations (Figs. 6b– 6d). The RMSD and R g values indicated that the protein-binding mode was stable (Figs. 6e and 6f). The details of the binding amino acid pairs are shown in Table S6. The ∆ G bind changed from -122.42 to -197.22 kcal/mol in the MD simulations. The interaction of the protein PICK1 with TLR4 was promoted by ∆ E vdW and ∆ E elec, and ∆ E GB and ∆ G solv generated energy losses in overcoming desolvation ( Table 2). These results revealed the relative stability of the PICK1-TLR4 complex. The interaction network between them was gradually optimized during MD simulations, and this network is crucial for maintaining the mechanical properties of PICK1.
Table 2.
Binding energies of PICK1 and TLR4
| Energy | 0 ns | 50 ns | ||||
|---|---|---|---|---|---|---|
| Average (kcal/mol) | SD (kcal/mol) | SEM (kcal/mol) | Average (kcal/mol) | SD (kcal/mol) | SEM (kcal/mol) | |
| Δ E vdW | -173.6700 | 14.8953 | 1.0207 | -209.1995 | 10.7279 | 2.2369 |
| Δ E elec | -62.4061 | 7.7085 | 5.7776 | -86.1578 | 8.6800 | 8.0653 |
| Δ E GB | 138.3554 | 16.3787 | 5.5003 | 132.3733 | 13.3863 | 6.3360 |
| Δ E surf | -24.6977 | 1.6405 | 0.1336 | -34.2337 | 1.7317 | 0.1526 |
| Δ G gas | -236.0761 | 18.6261 | 5.9690 | -295.3573 | 14.4785 | 7.1893 |
| Δ G solv | 113.6577 | 26.2400 | 5.4714 | 98.1396 | 3.3708 | 6.3327 |
| Δ G bind | -122.4184 | 7.0067 | 1.4610 | -197.2176 | 11.3316 | 2.3628 |
SD: standard deviation; SEM: standard error of the mean; ∆ E vdW: van der Waals energy; ∆ E elec: electrostatic energy; ∆ E GB: polar solvation-free energy; ∆ E surf: nonpolar solvation-free energy; ∆ G gas: gas-phase energy; ∆ G solv: solvation-free energy; ∆ G bind: binding-free energy.
Fig. 6. Binding energy of PICK1 and TLR4 according to molecular dynamics simulations. (a) Structural characteristics of the complexes in 50 ns. (b) 3D structures. The hydrogen bond is represented by dotted green lines. (c) Molecular interatomic forces in the PICK1-TLR4 complex. (d) 2D structures. The hydrogen bond is represented by dotted lines; the salt bridge is represented by colored lines. (e, f) RMSD and R g analyses. PICK1: protein interacting with C kinase 1; TLR4: Toll-like receptor 4; RMSD: root-mean-square deviation; R g: radius of gyration.
4. Discussion
PICK1, widely expressed in various tissues, is involved in the transport of membrane receptors through a single PDZ domain ( Ramsakha et al., 2023). Abnormal PICK1 expression has been associated with invasion and metastasis in some tumors, including gastric cancer ( Zhang et al., 2010; Dai et al., 2017). In this study, PICK1 expression was found to be decreased in human gastric tissues, which was predictive of poorer outcomes in patients. PICK1 overexpression suppressed gastric cell growth and migration and caused cell cycle arrest at the G0/G1 phase. Mechanistically, we demonstrated that PICK1 directly binds to TLR4, thereby promoting TLR4 degradation and decreasing inflammation-related protein levels ( Fig. 3). We also observed a complex interaction network at the binding interface between PICK1 and TLR4. Our results indicate that PICK1 is associated with the regulation of cell metastasis and inflammation and may be a useful therapeutic target for the treatment of human gastric cancer.
Inflammation has been linked to the activation of EMT in many cancers ( Ebrahimi et al., 2022). Changes in the inflammatory environment have been identified as key avenues for the treatment of human cancers. TLR4, an important molecule in inflammation-associated carcinogenesis, is a type I transmembrane protein that consists of three distinct structural domains: a leucine-rich repeat-containing ectodomain involved in pathogen-specific ligand recognition, a transmembrane domain, and a cytosolic domain that binds downstream adaptor proteins ( Fukata and Abreu, 2008; Yuan et al., 2013). Studies have demonstrated that gastric cancer cell lines and cells express high levels of TLR4, which correlate with tumor stage and patient survival ( Fernandez-Garcia et al., 2014; Taguchi and Mukai, 2019). Our research indicated that TLR4 expression was downregulated in PICK1-overexpressing human gastric cancer cells.
However, FSC-231 pretreatment significantly upregulated TLR4 expression in PICK1-overexpressing cells. TLR4 is located mainly in the endoplasmic reticulum (ER) and Golgi apparatus of quiescent cells. LPS stimulation causes the rapid migration of TLR4 from the Golgi apparatus to the cell membrane ( Rocuts et al., 2010). However, recent evidence suggests that PICK1 plays an important role in the transport of various vesicles from the Golgi complex to several cellular systems, including neurons ( Xu et al., 2016). PICK1 also interacts with Golgi-related PDZ and may be involved in vesicular transport from the Golgi apparatus to the acrosome ( Xiao et al., 2009). Colocalization analysis by immunofluorescence revealed that TLR4 resides mainly in the cytoplasm when present in PICK1-overexpressing cells. PICK1 and TLR4 interact with each other via co-immunoprecipitation and SPR. Autophagic inhibitors significantly suppressed PICK1-induced TLR4 downregulation ( Fig. 5). Our study suggests that PICK1 overexpression may alter the trafficking of TLR4 and enhance TLR4 degradation via autophagosomes. However, the specific degradation process is not yet clear and should be further explored in future research.
Further experiments explored the effects of PICK1 on TLR4 and the interaction network between the TLR4-PICK1 complex. It is known that clustering and synaptic targeting of PICK1 are dependent on the PDZ domain-mediated direct interaction at lipid membranes ( Pan et al., 2007). The PDZ domain binds to the Eph receptor tyrosine kinase family and its ephrin ligands, affecting the oncogenesis and migration of tumor cells ( Torres et al., 1998; Son et al., 2014; Liu et al., 2019). We also observed that PDZ domain inhibitors significantly suppressed PICK1-induced TLR4. We further determined the binding energies of PICK1 and TLR4 using MD simulations, and the data showed that interactions in the complex were reflected mainly by hydrogen bonds and salt-bridge bonding ( Fig. 6).
In summary, this study demonstrated that PICK1 modulates TLR4-mediated metastasis and inflammation in gastric cells, providing novel insights into the progression and treatment of human gastric cancer and supplying additional information for a better understanding of PICK1 cellular and pathological functions.
5. Conclusions
In summary, our study demonstrated that high expression of PICK1 inhibited the malignant progression of gastric cancer. PICK1 inhibited gastric cancer cell proliferation and migration in vitro, which is dependent on the TLR4/MyD88 signaling pathway. These results provide new insights into gastric cancer treatment.
The data presented in this study are available from the corresponding author upon reasonable request.
Supplementary information
Acknowledgments
This work was supported by the National Natural Science Foundation of China (No. 82172363), the Traditional Chinese Medicine Scientific Research Project of Zhejiang Province (No. 2023ZL010), and the Zhejiang Medical and Health Science and Technology Project (Nos. 2022KY529 and 2024KY636), China. We thank Editage ( https://www.editage.cn) for English language editing.
Author contributions
Kaiqiang LI, Yimin YANG, and Yaling WANG contributed equally to conceptualization, methodology, formal analysis, data curation, and writing – original draft. Jing JIN, Qianni WANG, and Lina PENG contributed to sample collection, data curation, and supervision. Aibo XU and Xuling LUO contributed to data curation and visualization. Wei YANG and Peng XU contributed to investigation and writing – review & editing. Bingyu CHEN, Ke HAO, and Zhen WANG contributed to funding acquisition and project administration. All authors have read and approved the final manuscript, and therefore, have full access to all the data in the study and take responsibility for the integrity and security of the data.
Compliance with ethics guidelines
Kaiqiang LI, Yimin YANG, Yaling WANG, Jing JIN, Qianni Wang, Lina PENG, Aibo XU, Xuling LUO, Wei YANG, Peng XU, Bingyu CHEN, Ke HAO, and Zhen WANG declare that they have no conflicts of interest.
The clinical specimens were obtained from Zhejiang Provincial People's Hospital and the National Human Genetic Resources Sharing Service Platform. The protocol was approved by the Ethics Committee of the Zhejiang Provincial People's Hospital (No. 2020QT312) and Shanghai Outdo Biotech Co., Ltd. (No. SHYJS-CP-1801015/YBM-05-02). The study was conducted in accordance with the guidelines of the Declaration of Helsinki.
Data availability statement
The data presented in this study are available from the corresponding author upon reasonable request.
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Supplementary Materials
Data Availability Statement
The data presented in this study are available from the corresponding author upon reasonable request.






