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PLOS One logoLink to PLOS One
. 2026 Feb 11;21(2):e0341263. doi: 10.1371/journal.pone.0341263

Seabirds shaped the expansion of pre-Inca society in Peru

Jacob L Bongers 1,2,3,*, Emily B P Milton 4,*, Jo Osborn 5, Dorothée G Drucker 6, Joshua R Robinson 7, Beth K Scaffidi 8
Editor: Simon Belle9
PMCID: PMC12893552  PMID: 41671212

Abstract

This research investigates the influence of seabird guano on agriculture in the Chincha Valley of southern Peru through multi-isotopic, archaeological, and historical data. We conduct stable carbon, nitrogen, and sulfur analyses of 35 late pre-Hispanic maize (Zea mays) cobs and 11 seabirds from archaeological contexts spanning the late Formative period (c. 200 BCE – 150 CE) to the Colonial period (1532–1825 CE). We report the strongest evidence yet for pre-Inca use of marine fertilizers in Chincha. Isotopic and radiocarbon data corroborate colonial-era records and regional avifauna iconography and assemblages, indicating that Indigenous communities fertilized maize with guano by at least 1250 CE. Maize δ15N values are consistent with archaeological studies on guano manuring in Chile, expanding the known geographical extent of this agricultural practice. Maize δ34S values overlap with experimental field data but are not enriched in 34S, possibly reflecting various environmental and cultural variables. We suggest that seabird guano fertilization played an important role in the sociopolitical and economic expansion of the Chincha Kingdom, and its eventual relationship with the Inca Empire. Our findings carry significant implications for the broader Andes, nuancing understandings of agricultural production in coastal environments while drawing attention to marine fertilizers as a potentially widespread driving force of social change among pre-Hispanic societies.

Introduction

Maize (Zea mays), a globally significant staple grain [1], had become a dominant crop across the Americas by the onset of European colonialism. However, the mechanisms supporting its geographic expansion and diverse domestication remain unknown [2]. Animal management likely contributed to these processes, given its long-standing role in supporting human subsistence [3]. For example, manuring with animal waste is an effective and sustainable practice because it enhances crop yields and maintains soil fertility [4], which in turn can contribute to the expansion and persistence of societies by ensuring the continuous provision of food for growing populations [5,6]. In the 19th century, guano—seabird excrement and accumulated food waste, feathers, and carcasses—from “guano islands” off the western coast of South America became one of the world’s most sought-after fertilizers because it contains the essential growing nutrients of nitrogen, phosphorous, and potassium (NPK) [79]. Recent research suggests that guano fertilization may have begun by at least 1000 CE in Tarapacá, northern Chile, yet the origins and regional importance of this fertilizer are poorly understood [10]. Using archaeological, historical, and isotopic data from the Chincha Valley, Peru, we ask: to what extent did seabird guano shape the development of pre-Hispanic societies in the Andes?

Here we apply a multidisciplinary, multi-isotopic (δ13C, δ15N, and δ34S) approach to evaluate seabird guano manuring in the Chincha Valley on the Peruvian southern coast (Fig 1) and potential paleodietary isotopic complications caused by this practice. Chincha is one of the most agriculturally productive coastal riverine valleys in Peru, making it an ideal context for this study. It was controlled by the Chincha Kingdom, a large-scale and centralized polity, during the Late Intermediate Period (LIP; 1000–1400 CE) before falling to the Inca and Spanish empires in the Late Horizon (LH or Inca period; 1400–1532 CE) and Colonial period, respectively. This polity reportedly comprised at least 30,000 tribute payers, organized into inter-dependent communities of specialized farmers, fisherfolk, and merchants [12]. High population coincided with a dense distribution of LIP and LH habitational sites, administrative complexes, cemeteries, and farming infrastructure (e.g., irrigation canals and cultivation fields) throughout the Chincha Valley, suggesting that demographic growth and agricultural production both increased during these periods [13]. This coastal valley is within 25 kilometers of the Chincha Islands, which are renowned for their abundant and high-quality guano deposits [7]. Guano-producing birds include the guanay cormorant (Leucocarbo bougainvilliorum), the Peruvian booby (Sula variegata), and the Peruvian pelican (Pelecanus thagus) (Fig 2). Other birds, including penguins and gulls, can also contribute to guano accumulation [8]. The proximity of these historically important deposits suggests that pre-Hispanic farmers in Chincha likely utilized seabird guano as a fertilizer [14].

Fig 1. Contextual information for maize and faunal isotopic data.

Fig 1

(A) Map of Peruvian guano islands [11] and Chincha and Chile [10] study areas, which yielded maize isotopic data that are compared in this study. (B) Map of Chincha study area, with middle valley cemeteries sampled for maize (marked by pink circles), the site of Jahuay (marked by white triangle) sampled for faunal remains, and the Chincha Islands (marked by the dotted white line). Shaded relief and country borders (A) are from Natural Earth. Sentinel-2 satellite imagery (B) was freely downloaded from https://dataspace.copernicus.eu/.

Fig 2. The primary guano-producing bird species.

Fig 2

(A) Sula variegata (Peruvian booby). (B) Pelecanus thagus (Peruvian pelican). (C) Leucocarbo bougainvilliorum (Guanay cormorant). Photos by Diego H. (A and C) and Claude Kolwelter (B), iNaturalist.org. Licensed under CC-BY 4.0. Cropped from originals.

Stable nitrogen analysis provides a reliable method for detecting past manuring practices [8,10]. Archaeological investigations of manure fertilization in southern Peru and northern Chile have found elevated nitrogen stable isotope ratios (δ15N) in crops, especially maize, suggesting farmers fertilized their fields with guano prior to the Spanish Colonial period (1532–1825 CE) [10,15]. Experimental studies demonstrate that crop nitrogen isotope ratios are altered by various biogenic manures, such as guano, fish remains, algae, and herbivore dung [8,16,17]. Organically fertilized plants tend to be more enriched in 15N relative to unfertilized plants, with significant increases in plant δ15N values by as much as +2 to +10‰ for terrestrial manures [18], + 2 to +15‰ for marine composts [17], and +10 to +40‰ for seabird guano [8]. When measured plant δ15N values are less than ~12–15‰, confirming the presence and type of fertilization practices can be complicated due to other nitrogen fractionation processes including intra-plant uptake variability [8], aridity [18], soil composition [19], and water management practices [20]. However, few natural processes and no marine fertilizers are known to produce δ15N values higher than +20‰, except seabird guano [16,21].

Recently, stable sulfur (δ34S) has been proposed as a secondary mechanism of identifying the use of marine fertilizers on crops [16,17]. Experimental studies have demonstrated that multiple marine fertilizers can result in significant 34S enrichment (+4‰ to +9‰) in plants [16,17]; however, associated field studies provided inconclusive results for bean and maize cultivars, suggesting that local growing conditions and plant physiology may influence the uptake of guano-derived δ34S values [9]. The exact mechanisms of sulfur uptake and realistic regional expectations for δ34S values in guano-fertilized, unfertilized, and wild plants remain unknown. Further, an archaeological reference for regional marine δ34S values is lacking [22].

We conduct stable carbon, nitrogen, and sulfur isotopic analyses of 35 maize cobs and 11 seabirds from cemeteries and a fishing settlement spanning the late Formative period (c. 200 BCE – 150 CE) to the Colonial period (1532–1825 CE). By integrating isotopic, archaeological, and historical data from Chincha, we provide some of the strongest evidence to date for pre-Inca seabird guano fertilization in the Peruvian Andes, thereby demonstrating the critical role of seabirds to the sociopolitical and economic expansion of the Chincha Kingdom. More broadly, our findings nuance understandings of agricultural sustainability in coastal environments and highlight marine fertilizers as potentially significant drivers of social change among pre-Hispanic societies throughout the Andes.

Results

Recent archaeological research in southern Peru revealed a permanent shoreline fishing settlement at Jahuay [23,24] and a dense array of mortuary sites in the middle Chincha Valley [2527]. Originally occupied during the late Formative period [23,24], Jahuay was reoccupied as a cemetery with middens from the LIP to the Colonial period. Deposits include diverse marine faunal remains, including seabirds, and a pyro-engraved gourd with seabird iconography (Fig 3). Regional survey identified over 500 graves that cluster into 44 cemeteries [25,26]. We documented maize cobs in over 80 graves from at least 15 cemeteries [27,28], suggesting maize nourished both the living and the dead (S1 Fig in S1 File).

Fig 3. LIP and LH seabird imagery from the Peruvian southern coast.

Fig 3

(A) Ceremonial digging stick or paddle, The Met Museum 1979.206.1025. (B) Bone balance-beam scale, The Art Institute of Chicago 1955.2579d. (C) Adobe frieze (now destroyed) at the site of La Centinela c.1938, Bennett Greig (1907–1944). (D) Embossed lead and silver ball depicting seabirds eating a fish, The Met Museum 82.1.22. (E) Ceramic jar from UC-018 mortuary site, middle Chincha Valley, photo by J. Bongers. (F) Pyro-engraved gourd from Jahuay, Quebrada de Topará, photo by J. Osborn. (G) Embroidered textile from UC-25, middle Chincha Valley, photo by C. O’Shea. (A-D): CC0 Public Domain. All photos cropped from the originals.

Written sources

Written sources describe the acquisition of seabird guano and the importance of this resource for trade and food production during the pre-Hispanic and colonial eras. Early colonial chronicles report that in coastal valleys from at least northern Peru down to northern Chile, groups sailed to nearshore islands on rafts and brought back abundant bird droppings for the cultivation of crops, including maize [29]. For example, the Lunahuaná people, located in the Cañete Valley north of Chincha, manured their agricultural fields with guano [30]. The Lunahuaná ethnonym may be derived from “guano” and/or “guanay” [31]. Guano was incorporated into soils at the time of planting or shortly afterward and was reportedly applied twice [32]. Swiss naturalist Johann Jakob von Tschudi observed the fertilizer being used alongside irrigation, noting that a fist-sized amount was added to each plant, and entire fields were subsequently submerged in water [33]. Guano could restore barren agricultural lands and boost maize production, making it an essential resource for sustainability [29]. Consequently, it became a highly sought-after item that communities traded among each other [29]. The Inca highly valued this fertilizer, imposing access restrictions on the guano islands during the breeding season and forbidding the killing of guano birds, on or off the islands, under penalty of death [34,35].

Material culture

LIP and LH iconography from Chincha and its neighboring valleys highlights the prominent role of marine avifauna and demonstrates that Chincha residents had established knowledge of the interconnection between seabirds and maize fertility (Fig 3). Seabirds feature in textiles [25,36], ceramics [37,38], balance-beam scales [39], spindles [37], decorated gourds [23], gold and silver metallurgy [37], adobe friezes and wall paintings [40,41], and ceremonial wooden boards, possibly used for digging or paddling watercraft [42,43]. Some naturalistic depictions leave little doubt as to their identification. More abstract forms can still be confidently identified as seabirds due to their curved necks, long beaks, and their frequent association with fish and wave motifs. Geometric rhomboid forms may also represent abstracted birds and fish [37] (S2 Fig in S1 File). Possible maize is shown sprouting from abstracted fish and stepped-terrace motifs (Fig 3A and S2 Fig in S1 File), linking marine fertility with agricultural productivity. Seabird imagery identified in Chincha middle valley cemeteries [25] (Fig 3E and Fig 3G) and at agricultural centers [39] reflect the far-reaching symbolic and economic importance of marine resources.

Faunal remains

A high frequency of guano birds in LIP and LH zooarchaeological assemblages from the Peruvian southern coast suggests local groups regularly consumed these animals. In a review of LIP and LH zooarchaeological assemblages from the south coast (S1 File), cormorants (Phalacrocoracidae) were consistently the most abundant taxon identified, comprising 56.73% of the total NISP. Gannets and boobies (Sulidae; 14.32%) and pelicans (Pelecanidae; 14.21%) were ranked second and third respectively.

Faunal isotopic data

Bone collagen from 11 guano birds (5 guanay cormorants, 3 Peruvian boobies, 1 Peruvian pelican, 1 gull, and 1 penguin) from late Formative and LH contexts at Jahuay [16,21] provide a regional isotopic baseline for Chincha seabirds (for quality control see S2 Dataset). δ15N values averaged +16.1 ± 1.9‰ ranging from +14.7‰ to +21.4‰, δ13C values average –11.6 ± 0.09‰ and range from –9.9‰ to −13.0‰, and δ34S values average +16.9 ± 0.55‰ with a range of +15.0‰ to +17.3‰. After correcting for a generalized ∆diet-tissue offset of ~+3.4 ± 1‰ for δ15N [44], we suggest the δ15N data are consistent with modern fishmeal values (δ15N ~+13‰) reported from this latitude (Pisco) [21].

Radiocarbon data

Twenty 14C AMS (accelerator mass spectrometry) dates from eleven graves sampled for maize overlap with the LIP, LH, and Colonial period (S1 Dataset). We dated tooth dentine, bone collagen, reeds, and hair from these contexts. After correcting for the marine reservoir effect (see Methods), these graves date from c. 1155 to 1675 CE (at 95.4% confidence). Median calibrations fall between c. 1195 to 1570 CE.

Maize carbon and nitrogen isotopes

As a pillar of present-day global agriculture, maize is well-studied isotopically. Despite unburned maize cobs sometimes producing unreliable radiocarbon ages [45], charred and desiccated archaeological remains appear to retain reliable stable isotopic values [15,46]. Further information on maize isotope physiology can be found in Supplementary section S2 Dataset.

We analyzed 35 surface-collected maize cobs collected from 26 tombs across 14 Middle Valley cemeteries for δ¹³C and δ¹⁵N. All cobs were more than 50% complete. One hundred percent of the sample was run in duplicates or triplicates. All isotopic data for individual and averaged replicates are reported in S2 Dataset. The %C, %N, and atomic C:N ratios are within the range of previously reported archaeological maize data (S3 Fig in S1 File) [10,46]. Ranges of averaged replicates for maize (n = 35), are –11.7‰ to –8.7‰ for δ13C (mean = –10.0‰ ± 0.6) and +10.0‰ to +27.4‰ for δ15N (mean = +19.4‰ ± 4.1). The Shapiro-Wilk test of normality indicates that δ13C (W(25) = 0.893, p = 0.013) deviates from a normal distribution while δ15N (W(25) = 0.9617, p = 0.429) does not.

All archaeological maize has δ15N values consistent with growing conditions altered by some type of soil amendment (dung, char, guano, etc.) [18]. At least thirteen maize samples have δ15N values equal to or higher than +20‰, a conservative lower limit for identifying guano based on experimental studies [18] and the local nitrogen expectations established by our archaeological guano bird values. Nine additional samples have δ15N values between +15‰ and +19.9‰, suggesting a majority (n = 22) of the sample could represent crops that were amended with fertilizers. Maize samples with δ15N values at or above +20‰ include cobs directly associated with dates from the LIP (n = 2).

Maize sulfur isotopes

Twenty of the 35 maize cobs were analyzed for stable sulfur at 100% duplication. The mean SD for reference material replicates was ± 0.46‰ and the mean absolute accuracy for calibrated reference materials was ± 0.17‰. After averaging replicates, δ34S ranged from +1.9‰ to +6.2‰ (mean = +3.9‰ ± 1.1), and mean Total S was 8.3 µg. With one exception, MCV-296, the precision for the replicate samples was better than 0.5‰ (δ34S) and 0.01%S, which fell within the typical range of precision for sulfur [47]. The %S for samples ranged between 0.02% to 0.28% with an average of 0.09% ± 0.06. Published %S for modern maize kernels ranges from 0.09–0.13% [16]. No good quality control parameters exist to assess δ34S values from archaeological maize. As such, we interpret the sulfur data with caution. Nitsch et al. [48] have suggested that sulfur in plants is likely affected by diagenetic processes similar to nitrogen, as both elements are measured from the amino acids comprising protein. They observed that while the total concentrations of sulfur (%S) may decrease due to various diagenetic processes, there were no significant changes in δ34S values [47]. In this study, three archaeological maize samples (0.02–0.04%) fell below the minimum known sulfur concentration for modern plants (>0.05%) [49]. While samples with a lower %S do not necessarily correlate to affected δ34S values [48], lower elemental concentrations can prove difficult to measure accurately; therefore, we interpret only values with ≥0.05 %S. δ34S values of the samples meeting these criteria ranged from +2.6‰ to +6.2‰ with a mean of +3.8‰ ± 0.9. These δ34S values are consistent with ranges measured for guano-fertilized maize reported in a previous experimental study [16]; however, none of these values reach the range of δ34S values documented for maize growth chamber studies [16], our archaeological seabirds (+15.0‰ to 17.3‰) or crops amended with other known marine fertilizers [17].

Comparisons among archaeological and modern maize

Chincha maize δ13C and δ15N values are consistent with measurements of archaeological maize from another dataset [10] henceforth identified as “Chile”, which identifies fertilization with seabird guano from the LIP period onwards (Fig 4). While radiocarbon date ranges may span multiple periods (S1 Dataset), time periods assigned to Chincha maize cobs are based on modeled median calibrations from sampled tombs and the means of modeled median calibrations when these tombs have multiple dates. We restrict our comparison to maize cobs from Chile to limit any effects of differential uptake by different plant parts [8]. Shapiro-Wilk tests of normality showed that neither δ13C (W(101) = 0.903, p<0.001) nor δ15N (W(101) = 0.949, p= 0.001) of the Chile maize cobs were normally distributed, therefore we employ non-parametric Mann-Whitney U tests in our comparisons. These analyses show archaeological Chincha (mean = +19.6‰ ± 4.0, n = 25) and Chile (mean = +16.6 ± 8.9‰, n = 101) maize have similar δ15N values (U=1058.5; p = 0.215). This remains true (U=177.5; p = 0.646) when both Chincha (mean = +20.5 ± 2.7‰, n = 6) and Chile (mean = +21.3 ± 5.6‰, n = 67) samples are restricted to maize cobs dated to the LIP and Inca period. δ13C values of Chincha (mean = –10.0 ± 0.4‰, n = 6) and Chile (mean = –10.3 ± 0.7‰, n = 67) from LIP and LH contexts are almost identical (U=135.5; p = 0.190) as well. Chincha maize δ15N values are significantly higher (U=34; p < 0.001) than Chile maize cobs from the pre-LIP (mean = +7.3 ± 5.2‰, n = 34). Separately, LIP-dated Chincha (mean = +21.0 ± 3.3‰, n = 4) and Chile (mean = +20.6 ± 6.0‰, n = 48) maize have very similar δ15N values, while in Inca period contexts, Chile maize (mean = +22.9 ± 4.2‰, n = 19) has somewhat higher δ15N than the Chincha sample (mean = +19.4 ± 0.2‰, n = 2). δ13C of maize cobs from Chincha and Chile from both the LIP and Inca periods are consistent (S2 Table in S1 File). Low sample sizes from Chincha prevent formal statistical comparison of individual time periods.

Fig 4. Comparison of δ13C and δ15N of archaeological maize from Chincha and Chile [10].

Fig 4

Scatterplot of δ13C and δ15N with a convex hull constructed for the range of Chincha samples (A) and box-and-whisker plots of δ13C (B) and δ15N values (C) organized by period (ND = no date/maize from undated context).

No regional studies have used δ34S to examine archaeological fertilization practices; therefore, Chincha maize δ34S values were compared to modern experimental values [16] and are interpreted with caution. The stable isotopic compositions of the Chincha maize samples are most similar in δ15N and δ34S bivariate isotope space to maize plants fertilized with seabird guano in controlled field experiments [16]. The comparative experimental sample only contains data for leaves and grains. While different parts of maize plants may yield different isotopic values due to variation in uptake residence and pathways, there is some research to suggest little difference in δ15N values (<0.5‰) between cobs and grains based on unfertilized and sheep-manured maize kernels and cobs [50].

Among experimentally grown maize, plants amended with seabird guano occupy the greatest amount of isotope space, while those fertilized with camelid dung or a modern ammonium sulfate mixture cover a much narrower region (S3 Table in S1 File). The isotope space occupied by guano fertilized plants encompasses an almost entirely different region of bivariate space than the other experimental fertilizer conditions (Fig 5). Both standard ellipse area (SEA) and kernel utilization density (KUD) overlap are generally in agreement with the SEA model indicating isotope space overlap of 2% or less and the KUD model showing no overlap of camelid dung and/or ammonium sulfate fertilized plants with seabird guano fertilized maize at the 75% contour level. At the 95% contour level maize plants fertilized with camelid dung overlap a small range (~ 15%) of the isotope space covered by plants fertilized with seabird guano (S4 Table in S1 File). The ammonium sulfate, camelid dung, and unfertilized conditions result in plants with largely overlapping isotope space, although camelid dung fertilized plants show some expansion on the δ15N axis (Fig 5). There is very little overlap (≤ 12% at the 95% contour level) of the Chincha maize samples by the experimental plants grown in unfertilized or ammonium sulfate fertilizer conditions. There is virtually no overlap (3%) in the isotope space of Chincha maize by plants fertilized with camelid dung at the 75% contour level. This overlap increases to ~20–25% (depending on model) at the 95% contour level, well below the cut-off of 60% that would indicate a strong likelihood of occupying the same isotope space. On the other hand, the isotope space occupied by experimentally fertilized seabird guano plants covers ~85–90% of the area covered by the Chincha maize at the 75% contour level and entirely overlaps (100%) the Chincha sample isotope space at the 95% level (S4 Table in S1 File).

Fig 5. Isotope space size and overlaps.

Fig 5

Plotted isotope space kernel utilization density functions (KUD; top row) and standard ellipse areas (SEA; bottom row) comparing Chincha maize with maize grown under different experimental fertilizer conditions [16]. Columns display results at commonly selected contour levels – 75% and 95%.

Discussion

This study makes methodological and empirical advances to the nascent study of agricultural fertilization in the Andes. Results suggest Indigenous communities used marine fertilizers for maize cultivation by at least 1250 CE. We demonstrate that stable sulfur analysis remains crucial for differentiating between past marine and terrestrial diets. Our multidisciplinary dataset provides strong support for pre-Inca seabird guano fertilization, an effective agricultural practice for boosting crop production that is more commonly associated with industrial societies. This likely contributed to the rise of the Chincha Kingdom and enhanced its strategic importance for the Inca Empire.

Shifting isotopic expectations for guano fertilization

Local isotopic compositions of seabird guano vary due to basal marine ecology, variation in bird diets, and chemical alterations over time (diagenesis) [21], therefore, regional bird faunal data may help estimate the upper and lower limits of guano inputs for fertilized plants. Fishmeal measured from different latitudes along coastal South America suggests that δ15N values in baseline fish ecology increase significantly with latitude (+6.5‰ over 9 degrees of latitude), suggesting guano birds at higher latitudes may have diets more enriched in 15N, which would in turn lead to higher δ15N values of their middens and guano. Additionally, the chemical composition of guano can change within years of initial excretion. Generally, guano %N decreases over time while becoming more enriched in 15N (up to +30‰ for fossil guano) [21]. Our archaeological faunal data provide an important approximation of the possible lower end of guano isotopic values in the Chincha area and, additionally, a control for possible industrial changes to marine sulfur reservoirs [47]. Our data suggest that input fertilizer δ15N values above ~+20‰ are likely reasonable for Chincha, especially if fresh guano was used [21]. Further, local guano variation––or aridity––may explain the slightly higher range of δ15N values observed in Chile, where the baseline δ15N soils and guano should be a few per mil higher [10]. Our measured δ34S range for seabirds (+15.0 to 17.0‰) sets a lower expected end range for marine sulfur than previously suggested (+20‰) [16,47,51].

Implications for regional paleodietary reconstructions

Reliably identifying marine isotopic “contamination” in terrestrial food systems is essential for improving paleodietary reconstructions and radiocarbon calibrations in the Central Andes region [52]. Szpak et al. [8,11] have noted that in archaeological periods where agriculture contributed significantly to human and animal diets, the 15N enrichment caused by marine fertilizers could introduce equifinal pathways to paleodietary interpretations of δ13C and δ15N. Specifically, terrestrial C4 resources enriched in the heavier nitrogen isotope can mimic the 2D isotope space of marine dietary sources [8], as shown in Fig 6A.

Fig 6. Basic schematic of how marine “contaminated” plants can create equifinality issues for paleodietary interpretations.

Fig 6

The plot compares Chincha maize (C4 crops) artificially enriched in 15N and with the isotopic measurements from archaeological guano birds (this study), demonstrating the potential utility of δ34S for discriminating between terrestrial plants with marine products and marine resources. (A) δ13C and δ15N data with boxes for expected terrestrial C4 and C3, freshwater, and marine ranges [53]. (B) δ34S and δ15N data with boxes for expected freshwater and marine ranges indicated [47].

However, it is critical to caveat that the isotopic values measured from bone collagen and hair keratin primarily reflect dietary protein but, generally, the bioavailable protein in C4 plants, such as maize, is low, unless chemically altered through cultural practices like nixtamalization [54]. Therefore, terrestrial C4 crops enriched in 15N from marine products would only significantly alter human collagen values if they entered the food chain via animals who consumed fertilized crops. Elsewhere in the Andes stable sulfur (δ34S) has been applied to discriminate between terrestrial and marine dietary inputs in contexts where δ13C and δ15N could not provide clear distinctions [51,55]. While experimental studies have hypothesized that plants fertilized with marine products should be enriched in 34S relative to unfertilized plants, experimental maize δ34S data, and the archaeological δ34S measurements presented here, do not consistently support this expectation [16,17]. At present it remains unclear whether marine-fertilized terrestrial plants could become so enriched in 34S that they would enter marine isotope space [16].

Without reliable quality control parameters for evaluating δ34S measurements from archaeological plants, we have elected to limit interpretations of our data. However, given review of agricultural literature, we suggest that our low δ34S values may be realistic, due to differences in plant uptake of nitrogen and sulfur, which merit further study. For example, sulfur uptake is influenced by parent soil composition, local climate and atmospheric contributions of δ34S, watering practices, and the quantity and timing of fertilization [49]. It is notable that sandy soils, like those in the Chincha Valley, are susceptible to sulfur deficiencies and leaching [49], which is exacerbated in irrigated fields where heavy inundation with water may cause translocation of sulfur [49]. Our historical records highlight cultural practices of flooding fields after fertilization, which may provide a cultural explanation for reduced guano-derived δ34S uptake in the valley [8]. It is further worth noting that highly negative δ34S values have been measured from sediments along the west coast of the South American continent and these values may compete with δ34S values from marine amendments [56].

If high δ34S values (>+15‰) are not reliably routed from marine fertilizers to land crops, δ34S measurements from human and animal tissues could still provide a critical method to address paleodietary equifinality unknowns introduced by marine fertilizers, as we show with Fig 6B [51,55]. Therefore, resolving sulfur uptake in crops and developing quality control parameters for archaeological plants are important and viable areas of future research.

Seabird guano fertilization: an Indigenous land management practice in the Andes

Archaeological research suggests guano fertilization began as early as the 1st millennium AD on the Peruvian north coast [11,57], but this remains to be tested isotopically. Written sources record the persistence of guano soil amendments through the Colonial period [32]. Our multidisciplinary data carry significant implications for understanding the regional significance of maize agriculture and seabird guano and demonstrate how local knowledge of land management strategies were potentially represented and reinforced through iconography. Successful maize crop cultivation necessitates specific agricultural strategies such as soil amendments (e.g., animal fertilizers, biochar, and composts), companion planting (with nitrogen-fixing plants, such as beans), burning or tilling of fields, or crop rotation [2,18]. It is likely, therefore, that Indigenous land management practices, such as manure fertilization, have long been important to regional maize cultivation, as has been documented for other ecosystems and natural resources in the Americas [58]. Documented maize fertilization practices vary, with methods such as companion planting, field burning, and guano application overlapping with major domestication centers [1,59]. In Peru, historical and archaeological data suggest guano was preferentially applied to maize. Because sulfur is a limiting nutrient that can impede maize growth [49], it is possible preferential application of guano reflected regional knowledge of differential nutrient requirements among plant species, supporting regional domestication processes.

The Peruvian coastal desert, encompassing numerous riverine valleys fed by Andean runoff, enabled irrigation agriculture that became an economic cornerstone for large polities including not only Chincha, but also Moche and Chimú. Archaeological findings from the northern guano islands suggest that the earliest group to interact with the islands were the Moche during the 1st millennium AD [57]. Given the adverse effects of irrigation, aridity, and field reuse on soils, and the accessibility of the Peruvian guano islands, it is plausible that guano fertilization shaped the economic and sociopolitical expansion of multiple coastal Andean societies. This hypothesis can be tested using our multidisciplinary research design, which is applicable across the Andes and especially in coastal valleys such as Virú and Lurín, which are located near guano-rich islands.

The integration of bird imagery throughout the Chincha iconographic corpus emphasizes that traditional ecological knowledge was interwoven into local cultural and religious expression. Prominent bird iconography is associated with potential maize imagery on agricultural digging tools and in administrative spaces. Seabirds were recognized as the producers of a valuable resource and respected accordingly. Chincha specialists would have understood that guano birds are susceptible to mass die-offs from El Niño-related disruptions to the marine food chain [60]. With time, this ecological knowledge may have shaped the conservation efforts formalized under Inca rule [34,35].

Seabird guano contributed to the development of the Chincha Kingdom

These results enhance understandings of pre-Hispanic agricultural sustainability in the Peruvian coastal desert, one of the driest regions on earth, and how privileged access to guano may have shaped the development of the Chincha Kingdom and its relationship to the Inca Empire. Sustainable agricultural practices involving maize production can form the economic foundation of large-scale societies by ensuring reliable food resources that support population growth [6163]. Seabird guano fertilization in Chincha appears to have been no exception. This land management strategy would have been essential to increasing maize crop yields and supporting the dense LIP and LH settlement patterns in the Chincha Valley [13], as well as a burgeoning population of 30,000 tribute payers [12] and likely over 100,000 people total. In this sense, the use of seabird guano fertilization to sustain growing coastal populations provides ancillary support for the Maritime Foundations of Andean Civilization hypothesis [64]. Our work demonstrates that by at least the 13th century, local farmers in the Chincha Valley manured irrigated fields with guano for maize cultivation. Precisely when and where Andean peoples first identified the agricultural potential of guano fertilization remains open to future investigation. Such a practice would have optimized the production of maize by mitigating NPK and sulfur depletion in soils caused by repeated use, aridity, and irrigation.

Guano likely constituted a critical source of economic and political power that expanded trade networks and facilitated cooperation among Chincha’s specialized farmers, fisherfolk, and merchants. Previous models [12,65] argue that Chincha merchants in the LIP undertook maritime voyages to exchange for spondylus shells (Spondylus princeps), a highly valuable mollusk employed in rituals across the Andes [66], but limited LIP evidence of spondylus suggests it was not initially a source of wealth [67]. Instead, this research provides support for Marco Curatola’s [14] model that guano was the primary driver of economic prosperity and sociopolitical influence for Chincha, and an important nexus for its network of interdependent specialists. In this view, fisherfolk acquired guano and provided it to farmers for maize production and to merchants for trading along the coast and into the highlands, expanding Chincha’s agricultural productivity and mercantile influence. We cannot rule out that increased maize crop yields and population levels may have also intensified competition among groups or contributed to new forms of territorial control, but these hypotheses need to be further explored archaeologically. Results provide indirect support for Chincha seafaring capacity because acquiring guano from offshore islands necessitated ocean travel [14,32]. Balsa rafts were likely used to transport the fertilizer from the Chincha islands to the mainland. Colonial-era sources report the Chincha lord commanded 100,000 rafts [68]. Chincha’s maritime knowledge and access to the Chincha islands underscore the polity’s strategic importance for the Inca Empire.

The Inca incorporated Chincha into their empire after a “peaceful” capitulation [29], creating one of the few calculated alliances of its kind for this time. Some argue that the agreement resulted in Chincha gaining access to the spondylus trade in exchange for voluntary subjugation and tribute payment [67]. We propose that guano may have played a key role in these negotiations. Land management strategies that boosted the productivity of crops, especially maize, were central for Inca expansion [61]. The Inca valued maize as a staple crop and an essential ingredient for fermented beer (chicha) that was consumed during important ceremonies [69]. Employing Chincha as a seafaring client state to gain control over guano would have advanced state production of maize in coastal and highland environments. Inca roads and administrative centers found in Chincha and the nearby Pisco Valley could have facilitated the movement of guano throughout the empire. The Inca demand for guano [35] strengthened Chincha’s negotiating power, allowing them to secure a prominent position within Inca society. Indeed, the strength of Chincha-Inca relations is best illustrated by observations made before Francisco Pizarro’s fateful attack on Andean people at Cajamarca in 1532 CE: the Chincha lord was the only other person being transported on a litter near Atahualpa himself, one of the final rulers of the Inca Empire [68].

Conclusions

Our multidisciplinary approach contributes some of the strongest evidence yet for pre-Inca seabird guano fertilization in the Peruvian Andes, with important implications for understanding sociopolitical and economic transformations throughout the broader region. Contextualized with recent datasets from Peru and Chile, this research suggests that guano fertilization was a widespread and enduring Indigenous land-use practice that contributed to the rise of the Chincha Kingdom and potentially other large pre-Hispanic societies along the coast. As demonstrated here and elsewhere, stable isotopic analysis of δ15N can provide a reliable method of detecting past guano fertilization and is essential for cases where material culture is not available. Wider geographic coverage of archaeological crop nitrogen could potentially document variations in guano δ15N associated with latitude, aridity, and age of the deposit. While not always available or preserved, we found regional faunal isotopic data, written sources, and iconography to be essential for nuancing our isotopic interpretations and for understanding the importance of marine ecosystems to the expansion of the Chincha Kingdom. This multidisciplinary approach demonstrates the crucial need to integrate multi-isotopic data with other lines of evidence because of the lack of quality control criteria and unresolved questions around differential plant uptake pathways for δ13C, δ15N, and δ34S of archaeological plant remains. Looking ahead, widespread analyses spanning multiple periods will be critical for identifying the origins and expansion of guano fertilization and how it impacted the long-term development of societies throughout the Andes.

Materials and methods

Stable isotope analysis of maize

Approximately 3-millimeter samples of desiccated and uncharred maize cob fragments were prepared at the Skeletal and Environmental Isotope Laboratory (SEIL) at the University of California, Merced following established protocols for the stable isotope analysis of archaeobotanical maize [46]. The necessity and protocols for pre-treating desiccated and carbonized plants is debated [70]. We elected not to pre-treat for potential humic contamination, as the effect on δ13C values is minimal (<1‰) and the recommended HCl rinse at 80°C for 30 minutes can result in significant sample loss [70,71]. No FTIR was used to test for contaminants, as this practice can be imprecise and unnecessarily destructive; rather, as this study is focused on fertilization, which requires reliable δ15N values, all samples were pre-treated for possible nitrate contamination following [71]. Cobs were sonicated in Millipore water (changing every 20 minutes) until clean, dried overnight at 30°C, and then homogenized into powder in methanol-cleaned canisters on the bead mill.

We prepared duplicate and triplicate samples, where sample availability allowed, of ~1.0 mg (1.1 ± 0.08 mg averaged across 73 replicates) of powdered maize for stable carbon and nitrogen analysis in tin capsules. Due to low sample availability after pre-treatment, a subset of nine maize cobs were prepared in duplicate and triplicate at a target weight of 0.4 mg (0.41 ± 0.02 mg averaged across 27 replicates), which is consistent with masses analyzed in other regional studies [46]. While the δ13C (mean = –10.4‰ ± 0.3) and δ15N (mean = + 19.2‰ ± 5.3) values of these samples are comparable with the other 26 maize cob samples analyzed at a higher mass of 1.1 ± 0.08 mg (δ13C mean = –9.9‰ ± 0.9; δ15N mean = + 19.5‰ ± 3.8), we exercise caution by restricting our interpretations to only samples with a target mass of 1.0 mg due to recent concerns regarding the reliability of samples with low masses [70]. One maize sample, MCV-262, was excluded from analysis because its context and date are unknown. Samples for stable sulfur analysis were prepared as 9–10 mg duplicates, measured into tin capsules.

Staff at the Stable Isotope Ecosystem Laboratory (SIELO) at the University of California, Merced measured δ13C and δ15N and elemental carbon and nitrogen contents of maize on a Costech 4010 Elemental Analyzer coupled with a Delta V Plus Continuous Flow Isotope Ratio Mass Spectrometer alongside standard reference materials. SIELO determined elemental carbon and nitrogen contents through linear regression of CO2 and N2 sample gas peak areas against known carbon and nitrogen contents of in-house (peach leaf) and international standards (USGS 40, EA acetanilide, USGS 41a, and Costech acetanilide). SIELO corrected raw measurements for instrumental drift and mass linearity and standardized those values to the international VPDB (δ13C) and AIR (δ15N) scales using the USGS 41a and USGS 40 standard reference materials. All isotope compositions are expressed in standard delta notations where:

δ = (Rsample/Rstandard  1)×1000

Staff at the Stable Isotope Facility (SIF), University of California, Davis, measured δ34S and elemental sulfur in maize powder according to their 2023 protocols, using the Elementar vario ISOTOPE cube elemental analyzer interfaced to an Elementar PrecisION isotope ratio mass spectrometer. SIF combusted samples in a tungsten oxide-packed reactor, reduced gasses with elemental copper, buffered through quartz chips, and then separated SO2 and CO2 through adsorption columns for peak focusing before passing through to the IRMS for isotope ratio measurement. SIF applied post-run corrections for instrumental drift, corrected for oxygen variability using a regression of size references, normalized isotope ratios using bounded isotopic references, and calculated elemental totals based on IRMS peak area size references as a calibration curve. SIF calibrated in-house references against international standards (IAEA-S-1, IAEA-S-2, IAEA-S-3, NBS-127, IAEA-SO-5, IAEA-SO-6), using cysteine, taurine, and salmon muscle for quality assurance and brightener, bovine gelatin, and blue-green algae for quality control. Isotope ratio measurements are reported as delta (δ) relative to Vienna Canyon Diablo Troilite (V-CDT).

International standards, check standards, and replicate measurements are reported in S2 Dataset. Quality control and quality assurance statistics indicate better than 0.5‰ precision. At SIELO, the long-term (~5 years) reproducibility for in-house reference peach leaves is ~ 0.2‰ for both δ13C and δ15N, and long-term reproducibility across all sample types (soil, tissue, plants, etc.) is ~ 0.1‰ for δ13C and ~0.2‰ for δ15N. Only samples meeting in-house and broader quality metrics were included in analyses; one δ13C/δ15N data point was excluded due to a > 1.0 SD within the triplicate measurement for δ15N.

Preliminary studies suggest that charred plants may have lower δ34S values (decreased by <1‰) and higher %S than uncharred crops. δ34S and %S appear to decrease over the life of the maize plant, and modern grains (late forming tissues) tend to show lower sulfur concentrations (between 0.10–0.13%) relative to other tissues (0.12–0.47%). Any %S values between 0.05–0.90% would fall within modern known ranges for plant sulfur concentrations [49]. There are presently no data to inform on δ34Scob-grain offsets, although, as later-forming tissues, we predict cob sulfur measurements should be close to grains.

Stable isotope analysis of fauna

Archaeological bones were prepared at the University of Tübingen Biogeology Laboratory following an acid-base-acid extraction. Bone samples were prepared following [72]. Briefly, bones were cut into 300–500 milligram pieces, then cleaned using alternating a Millipore-acetone-Millipore soak under sonication at five-minute intervals. Samples were then rinsed with Millipore water under sonication until clean and dried at 35°C for 48 hours, then crushed and sieved through a < 0.7-millimeter sieve. Samples were extracted following [72]. Between 250–450 milligrams of bone powder was transferred to 100 mL beakers and mixed in 40 mL of a 1M HCl solution for 20 minutes to dissolve the mineral structure before being filtered through Millipore filters and returned to the beaker with 40 mL of 0.125M NaOH solution at room temperature for 20 hours to remove humic contamination. The remaining material was then filtered, rinsed with a pH2 HCl solution, transferred to a glass tube with approximately 15–20 mL of pH2 solution, then left in an oven for 17 hours at 100°C. The sample was then filtered, with the liquid collected in pre-weighed and labeled glass vials. Vials were frozen for 24 hours, then freeze-dried. Aliquots of approximately 2.5 milligrams of collagen were weighed into 8.5 x 5 millimeter tin capsules for stable carbon, nitrogen, and sulfur analysis, and 0.4 milligrams of collagen were weighed into 5.5 x 3.5 millimeter tin capsules for carbon and nitrogen analysis.

Samples were measured with two in-house matrix-matched standards, camel and elk collagen, which were extracted in the same batch as the faunal samples, then calibrated relative to Standard Reference Materials (SRMs) USGS40 (δ15N = –4.52‰ and δ13C = –26.39‰), USGS41a (δ15N = +47.55‰ and δ13C = +36.55‰), IAEA-S-1 (δ34S = –0.30‰), IAEA-S-2 (δ34S = +22.62‰), and IAEA-S-3 (δ34S = –32.49‰). The Biogeology lab replicates 10% of all samples and analyzes two in-house standards for every ten samples. Samples were analyzed on an EA-IRMS at the University of Tübingen Geography facility. The combustion temperature was 1150°C and the reduction temperature 850°C, with a sample and TCD helium carrier gas flow at 230 ml per minute. Analytical error below 0.1‰, 0.2‰ and 0.4‰ (1σ) was determined for δ13C, δ15N and δ34S, respectively, across all analyses.

Stable isotope ratios of 13C/12C, 15N/14N and 34S/32S are set relative to international standards (VPDB for carbon, AIR for nitrogen and VCDT for sulfur). The isotopic ratios are expressed using delta (δ) notation as follows:

δ13C = ((13C/12C)sample/(13C/12C)reference  1) × 1,000 ()
δ15N = ((15N/14N)sample/(15N/14N)reference  1) × 1,000 ()
δ34S=((34S/32S)sample/(34S/32S)reference1)×1,000()

Bird bone collagen met the three established quality control standards including appropriate: (1) atomic C:N (2.9–3.6), C:S (600 ± 300), and N:S ratios (200 ± 100), (2) %C (>20%) and %N (>10%), and %S values (~0.23%), and (3) collagen yield (>0.5–1.0%) [73]. We used the conservative upper limits for the atomic C:N ratio outlined for birds in Table 4 in [73,74].

Radiocarbon dating

We report 20 14C AMS dates associated with sampled maize from middle valley mortuary sites (S1 Dataset). All radiocarbon dates were obtained from the Keck-CCAMS facility at the University of California Irvine (UCIAMS) using published methods [75]. The relationship between δ15N compositions of human remains and marine diet carries critical implications for calibrating dates and thus remains a critical point of discussion in the archaeology of western South America. This is largely because of the marine reservoir effect (MRE), which can make dates derived from people who consumed nitrogen-enriched foods (e.g., marine organisms) appear older than they are [27]. Values of δ15N provide a roughly linear scale of the relative importance of marine dietary resources, with ∼ + 11.5‰ indicating a wholly terrestrial diet and ∼ + 22.0‰ indicating a predominantly (∼90 per cent) marine diet [27,28]. Here, we consider the δ15N value of +15.0‰ as a baseline for a marine diet [76] in the Chincha Valley because of the arid conditions and local use of seabird guano fertilizer. Therefore, we calibrated eight dates from human hair, bone, and teeth using a mixture of SHCal20 and Marine20 [77] based on estimates ranging from 10 to 30 (± 10)% marine dietary component, depending on the δ15N values. The ΔR value for the Paracas area (110 ± 49) [78], the best available estimate for ΔR in Chincha, was recalculated to −32 ± 58 according to the Marine20 curve. We calibrated reed dates according to the ShCal20 Southern Hemisphere calibration curve [79] using OxCal v4.4 [80].

Statistical analyses

Isotope space overlap metrics (sometimes referred to as isotope niche space) are calculated for comparison of δ15N and δ34S from Chincha maize samples with experimentally fertilized modern maize [16]. Unlike traditional comparative statistics isotope space analyses offer the ability to consider isotopes of different elements at once in a single measure. This approach uses multi-dimensional spatial statistics to compare the total amount of space occupied by study groups – in this case archaeological maize samples from Chincha versus modern maize grown under known fertilizer regimes – and the degree of spatial overlap among groups [8183]. The application of isotope space measures here is aimed at determining which (if any) practices of fertilization the archaeological maize samples from Chincha are consistent with, not for assessing any aspect of niche as the methods are more commonly used.

Isotope space measures are calculated with the ‘rKIN’ package [83] in R which offers the possibility of analyzing datasets using three models: minimum convex polygons (MCPs), standard ellipse area (SEA), and kernel utilization density (KUD). These models handle sample size differences among study groups and uncertainties differently leading to slightly different results. While MCPs have consistently been found to underestimate isotope space size and overlap [83] and are not calculated here, both SEA and KUD models are presented. Each of these models can be customized by using a pre-determined percentage of the test data, known as a contour level (or interval). Contour levels can be set at any percentage, but here we generate isotope space measures at two common levels: 75% and 95%. The purpose of applying a contour level is to prevent outliers or other extreme datapoints from overly influencing estimates of isotope space size or overlap. Best practices call for calculating isotope space size at more than one contour level to assess the stability of model measurements and to identify how outliers may affect isotope space measures [83,84].

In standard ellipse area (SEA) models, ellipses are constructed by calculating radii based on the test data defined by the contour level indicated. SEA models have lower sensitivity to sample size differences among study groups and minimize the effect of outliers but will always be in the shape of an ellipse that may include unused or exclude used areas of isotope space. Elliptical models also assume that isotope data are independent and normally distributed in multivariate space [82], although archaeological isotope datasets are known or often suspected to be prone to non-normality [85]. Kernel utilization density (KUD) models are generated by summing two kernel functions over observed datapoints with the total area defined as the minimum size that includes all datapoints within the contour level under consideration free of distributional assumptions or pre-set grid shapes, such as ellipses [83]. Both SEA and KUD models calculate isotope space overlap as the size of the overlapping region between the isotope space area size of group A and the isotope space area size of group B divided by the total isotope space area of group B (and the inverse to get a measure of how much group B overlaps group A) [83]. The percentage of overlap is interpreted here as indicating how consistent the isotopic composition of the archaeological maize from Chincha (at least in terms of δ15N and δ34S) is with any of the experimental fertilizer conditions. While the specifics of the research question and nature of the study groups would determine what percentages of overlap are consequential, overlap of >60% is generally considered to be quite high and indicative of similar values [84].

Descriptive and inferential statistics were conducted in R (ver. 4.2.3). We applied an a priori significance level of α = 0.05 for all statistical tests.

Supporting information

S1 File. Supplementary text, figures, tables, and references supporting the study.

Text A. Avian zooarchaeology on the Peruvian southern coast. Text B. Maize isotope physiology. S1 Fig. Maize cobs from UC-008 Tomb 1 in the middle Chincha Valley, Peru. S2 Fig. Architectural friezes from major administrative sites in the Chincha and Pisco valleys depicting seabirds, fish, and possible sprouting maize. S3 Fig. Bivariate plots of wt% N and C/N atomic ratio vs. δ15N values of all archaeological maize from Chincha analyzed in this study, and bivariate plots of wt% N and C/N atomic ratio vs. δ15N values of archaeological maize from Chincha analyzed at a target weight of 1.0 mg and used for all statistical analyses. S4 Fig. Bivariate plots of δ34S vs. C:S ratios and δ34S vs. N:S ratios of all archaeological maize from Chincha analyzed in this study. S1 Table. Avifauna results from Jahuay, Cerro Azul and Lo Demás. S2 Table. Summary statistics for Chincha maize and comparative sample from Chile. S3 Table. Comparison of estimates of isotopic space size from standard ellipse area (SEA) and kernel utilization density (KUD). S4 Table. Pair-wise isotopic space overlaps from standard ellipse area (SEA) and kernel utilization density (KUD).

(DOCX)

S1 Dataset. Twenty radiocarbon dates from eleven graves sampled for maize.

(XLSX)

pone.0341263.s002.xlsx (11.9KB, xlsx)
S2 Dataset. All isotopic data and standards.

(XLSX)

pone.0341263.s003.xlsx (42.1KB, xlsx)

Acknowledgments

All necessary permits were obtained for the described study, which complied with all relevant regulations. The authors thank the Peruvian Ministry of Culture for granting us permits (206-2013-DGPC-VMPCIC/MC, 218-2015-DGPA-VMPCIC/MC, 107-2016-VMPCIC-MC, 145-2017-DGPA-VMPCIC/MC, and 148-2018-DGPA-VMPCIC/MC) to conduct this study. We appreciate the support from the Institute of Field Research, the Cotsen Institute of Archaeology, and the Archaeology Program at Boston University. Charles Stanish and Henry Tantaleán co-directed the Programa Arqueológico Chincha (PACH), which was essential for this research. Alexis Rodríguez, Richard Espino, Irving Aragonéz, and R. William Espino, along with the students and staff of the Chincha Archaeological Field School and the Proyecto de Investigación Arqueológica de Jahuay, made important contributions throughout the research process. For maize samples, Sabrina Nino and Faith Evans (UC Merced) assisted with sample preparation in the Skeletal & Environmental Isotope Laboratory, Dr. Robin Trayler and the staff of the Stable Isotope Ecosystems Laboratory at UC Merced performed carbon and nitrogen isotope and elemental analysis, and the UC Davis Stable Isotope Facility performed sulfur isotope analysis. We are grateful to Hervé Bocherens, Valentina García-Huidobro, and Peter Tung in the Biologeology Working Group at the University of Tübingen, Germany; and thank Viorel Atudorei and Seth Newsome for feedback on plant quality control measures, aridity mechanisms, and plant diagenesis. Thanks to Erik Marsh for recalculating the ΔR value used for this paper.

Data Availability

All relevant data are within the paper and its Supporting information files.

Funding Statement

Funding for archaeological fieldwork and isotopic analyses of maize samples was provided to JLB by the National Science Foundation Graduate Research Fellowship Program (DGE-1144087), the Society of Fellows at Boston University, the Ford Foundation Fellowship Program, the National Geographic Young Explorers Grant Program (9347-13), and the Sigma Xi Grants-in-Aid Research Program. The funders had no role in the study design, data collection and analysis, decision to publish, or preparation of the manuscript.

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Decision Letter 0

Simon Belle

27 Jun 2025

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Your manuscript PONE-D-25-25769 "Seabirds shaped the expansion of pre-Inca society in Peru" has now been seen by two external reviewers whose comments are listed at the end of these lines.

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Reviewer #1: The paper by Bongers et al presents new and original data about the possible fertilization of maize using seabird guano in the Chincha Valley (Peru) from the Late Formative until the Colonial Period.

Even though this case seems to be a good example on the use of fertilizers in the Andean region, I am worried about certain methodological aspects that debilitate the study:

- First of all, it is not clear to me why the authors analyzed surface-collected maize and not maize from their current or previous excavations in the cemeteries. The permanent exposure to sunlight, wind, dust, etc., could clearly affect the preservation of the archaeobotanical material. This is a very arid region and sun can affect negatively the maize conservation, cracking the cobs and allowing for contamination.

- Usually when analyzing archaeological plants for stable isotope analysis is necessary to run separately carbon and nitrogen isotopes. This, because the amount of nitrogen in plants is considerable low and the nitrogen peaks in the IRMS will not be high enough, generating confusing data. In fact, after doing the carbon isotope run, it is possible to calculate the amount in mg that will be needed for the nitrogen run, making sure to obtain a decent nitrogen peak and good d15N values. By reading the materials and methods section of the paper, it seems that the authors did just one run (with duplicates and triplicates) for d13C and d15N. For me, this is complicated in terms of methodology, as I find it difficult to trust the data. Moreover, the amount of maize measured in the IRMS, approx 1 mg, is really low compared to what you would expect for an archaeobotanical dessicated plant (between 3-5 mg). In addition, maize is characterized by having a very low % of N, so it is compulsory to measure more sample (mg) to obtain good results. Would it be possible for the authors to re-analyze their samples by doing separate runs? This is of great relevance to give further support to their findings and interpretations.

- I do not understand why the authors analyze bird bone collagen. I think it is clear for the audience that these are marine birds and that they will definitely have high d15N values as they feed on fish (and fish from the Humboldt Current that will be even more enriched in 15N than other parts of the world). It is confusing and there is not a straight connection between the fertilizer findings with the zooarchaeological results. It doesn't make much sense to me. Actually, this data and its discussion seems a bit forced in the paper.

On a different note, I find the structure of the paper somehow disorganized, especially in the discussion section. The authors jump from archaeological aspects to more isotope-methodological ones, to then go back to the archaeology discussion. I think the paper will be much better if the archaeology and isotope-methodology sections were separated and not mixing up along the discussion.

I will suggest the authors to be a little more cautious on their interpretations about the use of seabird guano and its contribution to the development of the Chincha Kingdom. For sure this fertilizer had an enormous impact on the local populations. However, this study only considers 35 samples (surface collected). More samples are needed to make greater interpretations.

I honestly believe that by improving these aspects, the paper will make a stronger case study. I would like to highlight the importance of discussing the role of sulfur isotopes in crops, and what can they tell us about agricultural practices. Even though there is not much information about this in the literature, particularly in the Andes and dessicated crops, I congratulate the authors for exploring this new line of evidence.

Reviewer #2: The manuscript by Bongers et al. "Seabirds Shaped the Expansion of Pre-Inca Society in Peru" asks a clear question: did seabird guano play a critical role in the agricultural and sociopolitical development of the Andes, particularly in the Chincha Valley?

The study is well written, has a compelling topic, and is methodologically robust. Its multidisciplinary approach, with topics as environmental history, archaeology and economic anthropology, is commendable, and the integration of stable isotope analysis into a broader historical and social framework is carefully executed.

However, the manuscript exaggerates the novelty of his contribution. It does not adequately situate its findings within the broader group of Andean archaeological and paleoecological studies. The manuscript should present a more balanced view, moderating claims to originality and engaging more deeply with the existing literature, especially given the well-established research on guano use, irrigation, and maize economies along coastal Peru. Although the authors claim that their study provides “the strongest evidence to date” for pre-Inca guano fertilization, they fail to acknowledge previous foundational work—notably that of Szpak (2014), Makarewicz & Tuross (2012), and others—that has already demonstrated the isotopic impact of guano on maize and human diets in Peru and Chile.

To strengthen the manuscript, authors should incorporate key references that provide critical context:

Chepstow-Lusty et al. (2009), which addresses agriculture as a central economic activity for Inca and Pre-Inca societies.

Snyder (2011), who discusses innovative irrigation techniques and their role in food security, including the use of guano.

Tykot and others. (2006), which links the introduction of corn to rapid population growth.

Rodrigues and Micael (2021), who highlight the role of guano birds in the expansion and prosperity of the Inca Empire and previous cultures.

Other concerns include:

Although guano is emphasized, alternative nitrogen sources such as fish-based composts or legume rotation are not adequately considered. Addressing these alternatives is important to validate the distinct isotopic signal of guano.

Although the discussion acknowledges the variability and limited understanding of sulfur uptake in plants, it still relies on δ³⁴S values to infer marine influence in paleodietary contexts. A stronger case would include experimental control data, such as fertilization trials under old analog conditions.

The manuscript does not sufficiently clarify the chronological precision or geographic specificity of the corn and guano samples. Without more precise dating, it is difficult to determine when guano fertilization became common in the Chincha Valley.

Finally, the discussion would benefit from exploring why guano fertilization was apparently adopted in the Chincha Valley but not uniformly in neighboring regions, and how adoption patterns may have varied socially or geographically.

**********

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Reviewer #1: No

Reviewer #2: No

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PLoS One. 2026 Feb 11;21(2):e0341263. doi: 10.1371/journal.pone.0341263.r002

Author response to Decision Letter 1


29 Jul 2025

We appreciate the insightful feedback from the reviewers, which has improved the paper.

Reviewer #1:

The paper by Bongers et al presents new and original data about the possible fertilization of maize using seabird guano in the Chincha Valley (Peru) from the Late Formative until the Colonial Period. Even though this case seems to be a good example on the use of fertilizers in the Andean region, I am worried about certain methodological aspects that debilitate the study:

First of all, it is not clear to me why the authors analyzed surface-collected maize and not maize from their current or previous excavations in the cemeteries. The permanent exposure to sunlight, wind, dust, etc., could clearly affect the preservation of the archaeobotanical material. This is a very arid region and sun can affect negatively the maize conservation, cracking the cobs and allowing for contamination.

We understand the reviewer’s concern. All organic archaeological materials, regardless of depositional context, have the potential to undergo contamination after deposition. Typically, this is addressed via quality control screening measures. While quality control assessments for plant isotopic values remain an ongoing area of research, we have done our best to address diagenetic concerns throughout our methodology. We sampled from whole, visually intact maize cobs (no visible cracks), avoiding areas that appeared damaged or particularly dirty. We then applied the recommended cleaning protocol [1] for nitrate contaminants. We discuss these protocols in more detail in our main text and supplemental materials (lines 560-569; supplemental figure S3).

Usually when analyzing archaeological plants for stable isotope analysis is necessary to run separately carbon and nitrogen isotopes. This, because the amount of nitrogen in plants is considerable low and the nitrogen peaks in the IRMS will not be high enough, generating confusing data. In fact, after doing the carbon isotope run, it is possible to calculate the amount in mg that will be needed for the nitrogen run, making sure to obtain a decent nitrogen peak and good d15N values. By reading the materials and methods section of the paper, it seems that the authors did just one run (with duplicates and triplicates) for d13C and d15N. For me, this is complicated in terms of methodology, as I find it difficult to trust the data. Moreover, the amount of maize measured in the IRMS, approx 1 mg, is really low compared to what you would expect for an archaeobotanical dessicated plant (between 3-5 mg). In addition, maize is characterized by having a very low % of N, so it is compulsory to measure more sample (mg) to obtain good results. Would it be possible for the authors to re-analyze their samples by doing separate runs? This is of great relevance to give further support to their findings and interpretations.

We appreciate the reviewer’s concerns; however, we suggest that a re-analysis at higher masses is not presently substantiated. We applied published protocols from leading regional plant studies, such as Szpak and Chiou 2019 [2], who suggested a minimum threshold of 0.5 mg as sufficient for analysis. Given the differences in machinery and protocols among labs, we also relied on the expertise of the lab specialists handling our samples to ensure materials were prepared appropriately for analysis. For example, in our initial run, several samples weight at ~0.5 mg samples did not produce adequate peak areas (aligned with reviewer concerns). Following a consultation with the U.C. Merced lab director, these samples were re-run at higher masses (>1mg) with good results (see attached reports EA20231220_report_0.5mg and EA20240207_report_1.0mg, which detail this occurrence, as well as lab linearity corrections and peak information for our samples).

All samples analysed at ≥1 mg fell within accepted ranges for the machine sensitivity–with good peak areas and no apparent linearity effects–suggesting our masses were adequate for analysis. Prompted by the reviewer’s concerns, we consulted with additional lab personnel, including folk at the University of New Mexico Center for Stable Isotopes, regarding machine settings and appropriate masses for plant analysis. We were informed by both labs that only plants with very high C:N ratios, such as those typical of wood (200-1000), require independent measurements for nitrogen. Our sample C:N ratios do not meet this threshold. We were also informed that studies focused on nitrogen fixation, or like analyses requiring highly precise and accurate results, can request to analyse plants with lower C:N ratios in nitrogen-only mode; however, our research questions do not require this setting, as even a few per mille of inaccuracy would not change our interpretations. As sample mass appears to be an emerging area of concern for archaeologists, we will request our reviews are made open to provide full transparency to readers on our methodological decision making.

I do not understand why the authors analyze bird bone collagen. I think it is clear for the audience that these are marine birds and that they will definitely have high d15N values as they feed on fish (and fish from the Humboldt Current that will be even more enriched in 15N than other parts of the world). It is confusing and there is not a straight connection between the fertilizer findings with the zooarchaeological results. It doesn't make much sense to me. Actually, this data and its discussion seems a bit forced in the paper.

The bird bones provide a baseline for isotopic expectations, as the isotopic composition of marine and terrestrial ecosystems can vary significantly, even over short distances. As the reviewer notes, the highly productive Humboldt Current and associated marine ecosystem services are unique to the coast of South America; therefore, it is essential to establish isotopic expectations for the region and period, as we note on lines 114-115 and 207-210. As there are few d15N / d13C data, and almost no d34S data available for archaeological marine fauna in the Chincha area (or even Peru), we measured carbon, nitrogen, and sulfur isotopes from various bird bones as a means of establishing a baseline to estimate local isotopic variation within the guano system. We have added clarification that this was the reason for our study design on lines 370-372. We emphasize that our data reinforce the need for local baseline construction, as our sulfur values were ~5‰ lower than the generally accepted +20‰ cited for global reservoirs (see lines 376-378). As such, our data have helped establish a lower threshold for possible marine sulfur values.

On a different note, I find the structure of the paper somehow disorganized, especially in the discussion section. The authors jump from archaeological aspects to more isotope-methodological ones, to then go back to the archaeology discussion. I think the paper will be much better if the archaeology and isotope-methodology sections were separated and not mixing up along the discussion.

Thank you for this constructive recommendation. We have revised the Discussion section to improve clarity and structure. We now begin the section with a brief introduction outlining its focus on both methodological and empirical contributions. We have also separated the methodological and archaeological discussions into distinct subsections to enhance readability and ensure a more coherent flow of ideas.

I will suggest the authors to be a little more cautious on their interpretations about the use of seabird guano and its contribution to the development of the Chincha Kingdom. For sure this fertilizer had an enormous impact on the local populations. However, this study only considers 35 samples (surface collected). More samples are needed to make greater interpretations.

We are grateful to the reviewer for this important and thoughtful comment. While our results offer high-probability, multidisciplinary evidence for the use of seabird guano as a pre-Hispanic agricultural amendment, we agree that our sample size necessitates caution in drawing broader conclusions about the scale and sociopolitical impact of this practice within the Chincha Kingdom.

We have tempered our interpretations regarding the role of guano in the emergence of the Chincha polity. For example, in the Abstract on lines 47-48, we now, “suggest that seabird guano fertilization played an important role in the sociopolitical and economic expansion of the Chincha Kingdom.” In the Discussion, we qualify our interpretation by stating that guano, “likely constituted a critical source of economic and political power,” and, “may have played a key role” in local negotiations with the Inca Empire (lines 492, 512-513).

I honestly believe that by improving these aspects, the paper will make a stronger case study. I would like to highlight the importance of discussing the role of sulfur isotopes in crops, and what can they tell us about agricultural practices. Even though there is not much information about this in the literature, particularly in the Andes and dessicated crops, I congratulate the authors for exploring this new line of evidence.

It’s been a unique [challenging] experience to collect and situate new sulfur data within the regional context, so we sincerely appreciate the reviewer’s recognition of this component :)

Reviewer #2:

The manuscript by Bongers et al. "Seabirds Shaped the Expansion of Pre-Inca Society in Peru" asks a clear question: did seabird guano play a critical role in the agricultural and sociopolitical development of the Andes, particularly in the Chincha Valley?

The study is well written, has a compelling topic, and is methodologically robust. Its multidisciplinary approach, with topics as environmental history, archaeology and economic anthropology, is commendable, and the integration of stable isotope analysis into a broader historical and social framework is carefully executed. However, the manuscript exaggerates the novelty of his contribution. It does not adequately situate its findings within the broader group of Andean archaeological and paleoecological studies. The manuscript should present a more balanced view, moderating claims to originality and engaging more deeply with the existing literature, especially given the well-established research on guano use, irrigation, and maize economies along coastal Peru. Although the authors claim that their study provides “the strongest evidence to date” for pre-Inca guano fertilization, they fail to acknowledge previous foundational work—notably that of Szpak (2014), Makarewicz & Tuross (2012), and others—that has already demonstrated the isotopic impact of guano on maize and human diets in Peru and Chile.

We appreciate the author’s perspective on the impact of our contributions, and have sought to moderate our claims, as we address to reviewer 1 above, and further, below. We also thank you for directing us to these references; Szpak’s graduate and subsequent work has been instrumental to development of isotopic fertilization studies in the region. We’ve added acknowledgement of these studies, which can be found on lines: 57-58, 100, 104

To strengthen the manuscript, authors should incorporate key references that provide critical context:

Chepstow-Lusty et al. (2009), which addresses agriculture as a central economic activity for Inca and Pre-Inca societies.

Snyder (2011), who discusses innovative irrigation techniques and their role in food security, including the use of guano.

Tykot and others. (2006), which links the introduction of corn to rapid population growth.

Rodrigues and Micael (2021), who highlight the role of guano birds in the expansion and prosperity of the Inca Empire and previous cultures.

We appreciate the reviewer’s concerns regarding the novelty of our argument and thank them for their provision of additional papers on this topic. We acknowledge (and cite) several studies that have conducted a multidisciplinary investigation of fertilization and have now sought to moderate our claims throughout the article. We feel our research is novel because we provide some of the first stable sulfur data for archaeological maize and guano birds in the Americas (previous studies have only contributed small (n=1) sample sizes with no quality control information). However, our argument about guano use does not rely solely on isotopic evidence, and we suggest our insights are unique for the south coast region; we consider geography (proximity to some of the most abundant guano deposits in the Andean region on the Chincha Islands) as well as archaeological (e.g., iconography, zooarchaeological remains, etc.) and historical (colonial-era documents) data reported in our paper. We agree with the reviewer that the paper would benefit from deeper engagement with the existing literature and are grateful for the thoughtful list of relevant sources on guano use and agricultural strategies. We have now cited all sources in the manuscript.

Although guano is emphasized, alternative nitrogen sources such as fish-based composts or legume rotation are not adequately considered. Addressing these alternatives is important to validate the distinct isotopic signal of guano.

We considered the possibility of other fertilizers but see this was not clear in our original text. As such, we’ve added a statement considering other fertilizers for our samples <20‰ (239-240). To date, guano is the only known amendment to produce >20‰ nitrogen values in agricultural crops (see lines 97-105 for more detail) (Szpak 2012a, 2012b, and 2014) [3–5], therefore, we still consider seabird guano as the only parsimonious explanation for many of our samples. Although the discussion acknowledges the variability and limited understanding of sulfur uptake in plants, it still relies on δ³⁴S values to infer marine influence in paleodietary contexts. A stronger case would include experimental control data, such as fertilization trials under old analog conditions.

We agree on the need for additional analog trials; however, we suggest there is some urgency in publishing our current dataset, as is, and allowing experimental studies to follow. Stable sulfur is poised to become a new trend in the region, and as we outline repeatedly throughout the paper, should not be used uncritically (and merits more foundational work!).

Recent archaeological fertilization studies have increasingly noted a potential for "contamination” of terrestrial food systems (at the human and animal levels) by marine fertilizers; the implications of such contamination for paleodietary reconstructions of past agricultural communities are significant. Whether marine δ³⁴S is reliably routed into plants via fertilization is at the center of this discussion––as the common, two-isotope analyses of carbon and nitrogen have been implicated by the well-documented enrichment of 15N in marine-fertilized C4 plants.

If δ³⁴S values consistently increase to marine levels (≥+15‰) in terrestrial plants, we cannot reliably use δ³⁴S to discriminate between marine and terrestrial inputs in fertilizer-using periods. If, however, marine-fertilized plants do not consistently enrich in 34S––as existing experimental studies and our newly presented maize data suggest––then δ³⁴S may remain a reliable, and relatively simple/accessible method for better untangling human/animal foodwebs on the coast.

It would be a shame to throw the baby (δ³⁴S) out with the bathwater! As such, we’ve used our data to initiate this exact discussion, describing the complexity of the problem and emphasizing the criticality of more mechanistic studies on sulfur (lines 415-417; 430-432). Using our data and interdisciplinary interpretations, we hope to help direct people towards, dare we say, “fertile” areas of future research.

The manuscript does not sufficiently clarify the chronological precision or geographic specificity of the corn and guano samples. Without more precise dating, it is difficult to determine when guano fertilization became common in the Chincha Valley.

Thank you for requesting clarification regarding the chronology of our samples. As noted in the “Maize carbon and nitrogen isotopes” section (lines 225-226), u

Attachment

Submitted filename: Response to Reviewers.docx

pone.0341263.s004.docx (84.4KB, docx)

Decision Letter 1

Simon Belle

18 Sep 2025

-->PONE-D-25-25769R1-->-->Seabirds shaped the expansion of pre-Inca society in Peru-->-->PLOS ONE-->-->

Dear Dr. Bongers,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process.

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Reviewer #3:

The authors present a study that complements existing knowledge on the use of fertilizers by pre-Hispanic populations. In this regard, the paper’s contribution lies in its focus on a specific area—namely, the Chincha Valley—and its discussion of how fertilization may have supported coastal expansion models.

How ever some improvements to the manuscripts:

When the authors refer to Chile, they must specify that it corresponds to the Tarapacá region. Chile is a country over 5,000 km long, with diverse ecological niches, landscapes, and pre-Hispanic cultures. Therefore, to ensure accuracy, it is requested that references to Chile be specified at least in the introduction and background sections as “Tarapacá, Northern Chile” (lines 44, 66, 117, and 272). The archaeological sites of Tarapacá correspond to various locations from the Late Formative, Late Intermediate Period (LIP), and Late Horizon (LH) in Tarapacá.

The research question clearly addresses the cultural significance and impact of guano use in pre-Hispanic societies.

The map should be improved in terms of geographic contextualization. While it shows the spatial relationship between the Chincha Valley, the Tarapacá region, and the sampled sites, it must be enhanced by including information such as a relevant capital city or by adding latitude and longitude coordinates. Additionally, it is requested that the icons representing sampling zones be made clearer and more contrasting.

Given that the sample size is small, clarification is needed regarding the 35 maize cobs mentioned. In Supplementary Figure 1 only fragments of cobs are shown, so it must be clarified whether the 35 cobs refer to complete specimens or fragments. If they are fragments, the authors should explain how the minimum number of 35 specimens was determined, since multiple fragments may belong to the same cob, reducing the actual number of individual samples and the sampling universe. This is essential to clarify due to the statistical analyses being conducted.

I strongly recommend to include some of the morphological characteristics of the archaeological maize samples, especially since not all of them fall within the same range of isotope values

Results:

Regarding the material culture findings, the idea is presented that bird iconography on various media may link marine fertility to agricultural productivity. This concept aligns well with Andean logics of duality, complementarity, and reciprocity, but it is not fully developed. It is suggested that the authors expand on this interpretation and revisit the research question by exploring the relationship between coastal resources and agriculture—especially if the aim is to show how seabirds contributed to the development and expansion of human groups in Chincha.

It is unclear why the maize cobs were not directly dated. Direct dating of cobs is consistent with the chronology of various Andean archaeological sites, including those in Tarapacá, Northern Chile, referenced in the manuscript (see Vidal et al. 2021, Vidal et al. 2024). The claim that maize cobs may yield misleading radiocarbon results lacks support. Grobman et al 2012´s observation is a specific inconsistency in the Huaca Prieta context and should not be generalized. This point must be clarified, and ideally, the cobs should be directly dated.

Although the δ34S results are inconclusive, their inclusion is appreciated and valuable as comparative data for future analyses. This new type of experimental approach is appreciated.

Figures 4, 5, and 6: These figures have low resolution and should be improved to allow proper reading and interpretation.

Discusion:

The relationship between the use of seabird guano as fertilizer and the development of the Chincha Kingdom must be further explored. The manuscript should explore in greater depth how agriculture enhanced by seabird guano fertilization may have contributed to the emergence of complexity in the Chincha Kingdom. For example, was agriculture the foundation for new systems of cooperation or competition? Did it lead to new forms of territorial control? Since this element is central to the research question, it should be critically evaluated, considering relevant archaeological social theory—such as the work of Stanish. The use of the Maritime Foundations of Andean Civilization framework, while appropriate, could be enriched by incorporating more updated perspectives. While the coast is ecologically significant, it is also shaped by human decisions and multiples factors.

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Reviewer #3: Yes

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Reviewer #3: The authors present a study that complements existing knowledge on the use of fertilizers by pre-Hispanic populations. In this regard, the paper’s contribution lies in its focus on a specific area—namely, the Chincha Valley—and its discussion of how fertilization may have supported coastal expansion models.

How ever some improvements to the manuscripts:

When the authors refer to Chile, they must specify that it corresponds to the Tarapacá region. Chile is a country over 5,000 km long, with diverse ecological niches, landscapes, and pre-Hispanic cultures. Therefore, to ensure accuracy, it is requested that references to Chile be specified at least in the introduction and background sections as “Tarapacá, Northern Chile” (lines 44, 66, 117, and 272). The archaeological sites of Tarapacá correspond to various locations from the Late Formative, Late Intermediate Period (LIP), and Late Horizon (LH) in Tarapacá.

The research question clearly addresses the cultural significance and impact of guano use in pre-Hispanic societies.

The map should be improved in terms of geographic contextualization. While it shows the spatial relationship between the Chincha Valley, the Tarapacá region, and the sampled sites, it must be enhanced by including information such as a relevant capital city or by adding latitude and longitude coordinates. Additionally, it is requested that the icons representing sampling zones be made clearer and more contrasting.

Given that the sample size is small, clarification is needed regarding the 35 maize cobs mentioned. In Supplementary Figure 1 only fragments of cobs are shown, so it must be clarified whether the 35 cobs refer to complete specimens or fragments. If they are fragments, the authors should explain how the minimum number of 35 specimens was determined, since multiple fragments may belong to the same cob, reducing the actual number of individual samples and the sampling universe. This is essential to clarify due to the statistical analyses being conducted.

I strongly recommend to include some of the morphological characteristics of the archaeological maize samples, especially since not all of them fall within the same range of isotope values

Results:

Regarding the material culture findings, the idea is presented that bird iconography on various media may link marine fertility to agricultural productivity. This concept aligns well with Andean logics of duality, complementarity, and reciprocity, but it is not fully developed. It is suggested that the authors expand on this interpretation and revisit the research question by exploring the relationship between coastal resources and agriculture—especially if the aim is to show how seabirds contributed to the development and expansion of human groups in Chincha.

It is unclear why the maize cobs were not directly dated. Direct dating of cobs is consistent with the chronology of various Andean archaeological sites, including those in Tarapacá, Northern Chile, referenced in the manuscript (see Vidal et al. 2021, Vidal et al. 2024). The claim that maize cobs may yield misleading radiocarbon results lacks support. Grobman et al 2012´s observation is a specific inconsistency in the Huaca Prieta context and should not be generalized. This point must be clarified, and ideally, the cobs should be directly dated.

Although the δ34S results are inconclusive, their inclusion is appreciated and valuable as comparative data for future analyses. This new type of experimental approach is appreciated.

Figures 4, 5, and 6: These figures have low resolution and should be improved to allow proper reading and interpretation.

Discusion:

The relationship between the use of seabird guano as fertilizer and the development of the Chincha Kingdom must be further explored. The manuscript should explore in greater depth how agriculture enhanced by seabird guano fertilization may have contributed to the emergence of complexity in the Chincha Kingdom. For example, was agriculture the foundation for new systems of cooperation or competition? Did it lead to new forms of territorial control? Since this element is central to the research question, it should be critically evaluated, considering relevant archaeological social theory—such as the work of Stanish. The use of the Maritime Foundations of Andean Civilization framework, while appropriate, could be enriched by incorporating more updated perspectives. While the coast is ecologically significant, it is also shaped by human decisions and multiples factors.

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Reviewer #3: No

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PLoS One. 2026 Feb 11;21(2):e0341263. doi: 10.1371/journal.pone.0341263.r004

Author response to Decision Letter 2


22 Oct 2025

Responses to Feedback

We appreciate the insightful feedback from this reviewer, which has improved the paper.

Reviewer #3:

The authors present a study that complements existing knowledge on the use of fertilizers by pre-Hispanic populations. In this regard, the paper’s contribution lies in its focus on a specific area—namely, the Chincha Valley—and its discussion of how fertilization may have supported coastal expansion models.

However some improvements to the manuscripts:

When the authors refer to Chile, they must specify that it corresponds to the Tarapacá region. Chile is a country over 5,000 km long, with diverse ecological niches, landscapes, and pre-Hispanic cultures. Therefore, to ensure accuracy, it is requested that references to Chile be specified at least in the introduction and background sections as “Tarapacá, Northern Chile” (lines 44, 66, 117, and 272). The archaeological sites of Tarapacá correspond to various locations from the Late Formative, Late Intermediate Period (LIP), and Late Horizon (LH) in Tarapacá.

Thank you for this point. We have amended the text so that the first mention of the Chilean data now states it is from Tarapacá.

The research question clearly addresses the cultural significance and impact of guano use in pre-Hispanic societies.

We appreciate this assessment!

The map should be improved in terms of geographic contextualization. While it shows the spatial relationship between the Chincha Valley, the Tarapacá region, and the sampled sites, it must be enhanced by including information such as a relevant capital city or by adding latitude and longitude coordinates. Additionally, it is requested that the icons representing sampling zones be made clearer and more contrasting.

We have updated the map to include the capital city of Lima and to improve the contrast of the icons.

Given that the sample size is small, clarification is needed regarding the 35 maize cobs mentioned. In Supplementary Figure 1 only fragments of cobs are shown, so it must be clarified whether the 35 cobs refer to complete specimens or fragments. If they are fragments, the authors should explain how the minimum number of 35 specimens was determined, since multiple fragments may belong to the same cob, reducing the actual number of individual samples and the sampling universe. This is essential to clarify due to the statistical analyses being conducted.

I strongly recommend to include some of the morphological characteristics of the archaeological maize samples, especially since not all of them fall within the same range of isotope values

We have updated the text to clarify (1) the maize cobs are all more than 50% complete (228) and that (2) MNI may be established as the maize fragments were collected from 26 distinct tombs across 14 cemeteries (227-228). This mitigates the issue that the reviewer raises.

We appreciate the reviewer’s suggestion to include morphological data for the maize samples.

Morphological measurements were not collected for these specimens, although we are considering including them in future studies. We agree that a detailed morphological analysis would be valuable future research. However, the focus for this study is to evaluate isotopic evidence for fertilization practices rather than to characterize the morphology of individual maize samples.

Results:

Regarding the material culture findings, the idea is presented that bird iconography on various media may link marine fertility to agricultural productivity. This concept aligns well with Andean logics of duality, complementarity, and reciprocity, but it is not fully developed. It is suggested that the authors expand on this interpretation and revisit the research question by exploring the relationship between coastal resources and agriculture—especially if the aim is to show how seabirds contributed to the development and expansion of human groups in Chincha.

We agree with the reviewer that, ideally, we would expand the ideological aspects of guano fertilization and its relationship to seabirds in iconography and ethnohistory. However, due to the multidisciplinary approach of this article, and the extensive discussion required for stable isotopic data, we have determined that this is beyond the scope of this article. We have future work planned and would like to include these ideas!

It is unclear why the maize cobs were not directly dated. Direct dating of cobs is consistent with the chronology of various Andean archaeological sites, including those in Tarapacá, Northern Chile, referenced in the manuscript (see Vidal et al. 2021, Vidal et al. 2024). The claim that maize cobs may yield misleading radiocarbon results lacks support. Grobman et al 2012´s observation is a specific inconsistency in the Huaca Prieta context and should not be generalized. This point must be clarified, and ideally, the cobs should be directly dated.

Our maize cobs are dated as best as possible given (1) our available resources and (2) what is presently known regarding radiocarbon dating of uncharred material. We suggest Grobman et al. (2012)’s study indicates caution should be taken when dating uncharred maize cobs, as we have in our sample. While Grobman et al. 2012 found that charred cobs produced radiocarbon results consistent with their stratigraphic context, all nine uncharred cobs, which represent six separate units, produced anomalously young dates, regardless of their stratigraphic positioning. We therefore contend that the issue is not specific to Huaca Prieta, but to the uncharred nature of the material. While we agree that an ideal scenario would involve direct dating of our samples, we do not feel that this is a justified use of resources at this time, as we cannot be sure those dates would provide reliable results––rather, Grobman et al. provide grounds to believe any dates on uncharred cob should be treated with caution. We realize we misstated that some of our cobs were partially charred and have updated the text to record their uncharred nature (556).

Although the δ34S results are inconclusive, their inclusion is appreciated and valuable as comparative data for future analyses. This new type of experimental approach is appreciated.

We appreciate the reviewer recognizing the value of these data to the wider study of maize fertilization.

Figures 4, 5, and 6: These figures have low resolution and should be improved to allow proper reading and interpretation.

We believe the issue has been caused by the file format provided to the reviewer but will ensure high-resolution images are provided for the final document.

Discussion:

The relationship between the use of seabird guano as fertilizer and the development of the Chincha Kingdom must be further explored. The manuscript should explore in greater depth how agriculture enhanced by seabird guano fertilization may have contributed to the emergence of complexity in the Chincha Kingdom. For example, was agriculture the foundation for new systems of cooperation or competition? Did it lead to new forms of territorial control? Since this element is central to the research question, it should be critically evaluated, considering relevant archaeological social theory—such as the work of Stanish. The use of the Maritime Foundations of Andean Civilization framework, while appropriate, could be enriched by incorporating more updated perspectives. While the coast is ecologically significant, it is also shaped by human decisions and multiples factors.

Thank you for raising these thoughtful points. To address how seabird guano fertilization contributed to the development of the Chincha Kingdom, we first must clarify the broader role that manuring can play in driving the expansion of large-scale societies. In the Introduction (lines 57-61), we note that sustainable agricultural practices can promote the expansion of societies by ensuring a stable food supply for growing populations. In the Discussion (lines 478-480), we have revised statements to emphasize that sustainable agricultural practices involving maize production can serve as an economic foundation for large-scale societies by providing reliable food resources that can sustain population growth. We have added the Lombardo et al. (2025) and Finucane (2009) citations to support our argument. Seabird guano fertilization is highlighted as one such sustainable practice, as it directly increases maize crop yields (lines 481-482). We draw attention to evidence of dense Late Intermediate Period and Late Horizon settlement and high population estimates for the late pre-Hispanic Chincha Valley, further demonstrating the potential effects that seabird guano fertilization can have on a large-scale polity such as the Chincha Kingdom (lines 481-484).

We provide a detailed discussion about how seabird guano contributed to cooperation and the emergence of complexity in the Chincha Kingdom (lines 493-512). For example, we write about how guano facilitated cooperation between Chincha Kingdom’s specialized farmers, fisherfolk, and merchants. We state, following Curatola’s (1997) model, that fisherfolk sailed to the nearby offshore islands to acquire guano and then subsequently provided it to farmers for enhancing maize production and to merchants for trading along the coast and the highlands, expanding not only Chincha’s agricultural productivity but also its mercantile influence (lines 501-504). This burgeoning network of specialists is a hallmark of the complexity of the Chincha Kingdom. We have added lines 504-507 to note that increased population levels and maize production arising from guano use may have intensified inter-group competition and new forms of territorial control, but these are hypotheses that need to be further explored archaeologically.

We agree that the coast is an ecologically important zone that is shaped by human decisions. To this point, we have stated that seabird guano fertilization may have represented an effective regional strategy for producing food despite the challenging, arid Andean coast (lines 454-461 and lines 487-492).

We feel we have incorporated Andean work sufficiently and provided a measured interpretation regarding the wider significance to the region while maintaining a manuscript of appropriate length. We feel that additional topics, such as competition, would be better addressed in future follow-up studies looking at wider regional patterns in similar data, and hope such a study will be possible soon. If the reviewer is working on similar research, we encourage them to reach out for a potential collaboration after the publication of this article.

Attachment

Submitted filename: Response_to_Reviewers_auresp_2.docx

pone.0341263.s005.docx (43.3KB, docx)

Decision Letter 2

Simon Belle

30 Dec 2025

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Reviewer #4: I should begin by noting that I was not one of the original reviewers for this manuscript, so I am reading it for the first time. As the manuscript has already gone through two review stages, the version I read was well-polished and addressed the previous reviewers’ concerns for the most part. Where a reviewer’s recommendations were not resolved, the authors made a satisfactory explanation as to why they chose not to make the revision (for example, Reviewer #3’s recommendation to radiocarbon date all maize samples, which I agree with the authors is not necessary for this study and given the contextual information already known for the samples).

I do not have any issue with the methodology, statistics, or conclusions drawn from the study, and believe it serves as an important contribution for archaeology in the Andean/coastal region. It is also relevant to other regions of the world, as the economics of fertilization is often ignored in archaeology. The new data regarding δ34S isotopes is interesting, even if it did not conform to expectations (“At present it remains unclear whether marine-fertilized terrestrial plants could become so enriched in 34S that they would enter marine isotope space”).

I reviewed the manuscript and supplemental data/document files. My comments are brief and should be easy to resolve. The first is the most significant, but the others are minor:

Figure 1 caption, line 119: “Map of Chincha study area, with middle valley cemeteries sampled for maize (marked by yellow squares)” The symbols for maize locations are red/pink circles. I think the yellow squares may have been on a previous version of the map.

Minor issues:

Line 110 typo: “however, associated field sprovided inconclusive results for”

Line 115 typo: “marine isotopic values iis lacking”

Line 128: “We conduct stable carbon, nitrogen, and sulfur analyses” add “isotopic” or “isotope” before “analyses”

Line 259 spacing typo: “there were no significant changes in δ34S values [47].In this study,”

Line 396: “terrestrial C4 crops” subscript 4

Line 490; “cooperation between” should be “among” since there are several groups listed, not two

Lines 555-556 typo: “The necessity and protocols for pre-treating desiccated and carbonized plants remains debated” add an “is” before “debated”

Line 638 swap period for comma: “into 8,5 x 5 millimeter”

Line 640 swap period for comma: “5,5 x 3,5 millimeter tin capsules”

Line 641 paragraph: be consistent with ‰ and spaces after numbers, as this paragraph has both versions (I would recommend checking the entire manuscript to be consistent)

Line 650 typo?: “n analytical error below 0.1 ‰, 0.2 ‰ and 0.4‰”

Lines 650-654: no superscript for isotopes on these lines

Line 665: “from middle valley” should this be capitalized?

Fig 2 caption: Since Plos One aims for a broad (if mostly academic) audience, should the common names of the birds be included too?

Fig 3 caption: “middle Chincha Valley” and “Middle Chincha Valley” both appear (this relates to the capitalization comment earlier)

Fig 6 caption: “C4 crops” subscript 4

Spacing for ± and numbers is inconsistent throughout the paper

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PLoS One. 2026 Feb 11;21(2):e0341263. doi: 10.1371/journal.pone.0341263.r006

Author response to Decision Letter 3


2 Jan 2026

Responses to Feedback

We appreciate the insightful feedback from this reviewer, which has improved the paper.

Reviewer #4:

• Figure 1 caption, line 119: “Map of Chincha study area, with middle valley cemeteries sampled for maize (marked by yellow squares)” The symbols for maize locations are red/pink circles. I think the yellow squares may have been on a previous version of the map.

Thank you for pointing this out. We have amended the text to say that the cemeteries are marked by pink circles.

• Line 110 typo: “however, associated field sprovided inconclusive results for”

We have revised the text to say that “associated field studies provided inconclusive results for…”

• Line 115 typo: “marine isotopic values iis lacking”

• Line 128: “We conduct stable carbon, nitrogen, and sulfur analyses” add “isotopic” or “isotope” before “analyses”

• Line 259 spacing typo: “there were no significant changes in δ34S values [47].In this study,”

• Line 396: “terrestrial C4 crops” subscript 4

• Line 490; “cooperation between” should be “among” since there are several groups listed, not two

• Lines 555-556 typo: “The necessity and protocols for pre-treating desiccated and carbonized plants remains debated” add an “is” before “debated”

• Line 638 swap period for comma: “into 8,5 x 5 millimeter”

• Line 640 swap period for comma: “5,5 x 3,5 millimeter tin capsules”

We are grateful to you for catching these mistakes. They have all been addressed in our manuscript.

• Line 641 paragraph: be consistent with ‰ and spaces after numbers, as this paragraph has both versions (I would recommend checking the entire manuscript to be consistent)

Thanks for identifying this inconsistency. We are now consistent with ‰ and spaces after numbers.

• Line 650 typo?: “n analytical error below 0.1 ‰, 0.2 ‰ and 0.4‰”

Yes, this is a typo. We have removed ‘n’ from the sentence.

• Lines 650-654: no superscript for isotopes on these lines

• Line 665: “from middle valley” should this be capitalized?

• Fig 3 caption: “middle Chincha Valley” and “Middle Chincha Valley” both appear (this relates to the capitalization comment earlier)

We have included superscripts for isotopes on Lines 650-654. In our manuscript, we capitalize ‘Chincha Valley’ when used as part of the phrase ‘middle Chincha Valley;’ otherwise, ‘middle valley’ is not capitalized. This is now consistent in the manuscript.

• Fig 2 caption: Since Plos One aims for a broad (if mostly academic) audience, should the common names of the birds be included too?

This is an excellent point. We have now included the common names for the birds in the Figure 2 caption.

• Fig 6 caption: “C4 crops” subscript 4

• Spacing for ± and numbers is inconsistent throughout the paper

Thanks again for pointing out these issues. We have corrected the formatting of ‘C4’ in Figure 6 and ensured that spacing around the ± symbol and numerical values is consistent throughout the paper.

Attachment

Submitted filename: Response_to_Reviewers_auresp_3.docx

pone.0341263.s006.docx (38.9KB, docx)

Decision Letter 3

Simon Belle

5 Jan 2026

Seabirds shaped the expansion of pre-Inca society in Peru

PONE-D-25-25769R3

Dear Dr. Bongers,

We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements.

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Kind regards,

Simon Belle, Ph.D.

Academic Editor

PLOS One

Acceptance letter

Simon Belle

PONE-D-25-25769R3

PLOS One

Dear Dr. Bongers,

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Associated Data

    This section collects any data citations, data availability statements, or supplementary materials included in this article.

    Supplementary Materials

    S1 File. Supplementary text, figures, tables, and references supporting the study.

    Text A. Avian zooarchaeology on the Peruvian southern coast. Text B. Maize isotope physiology. S1 Fig. Maize cobs from UC-008 Tomb 1 in the middle Chincha Valley, Peru. S2 Fig. Architectural friezes from major administrative sites in the Chincha and Pisco valleys depicting seabirds, fish, and possible sprouting maize. S3 Fig. Bivariate plots of wt% N and C/N atomic ratio vs. δ15N values of all archaeological maize from Chincha analyzed in this study, and bivariate plots of wt% N and C/N atomic ratio vs. δ15N values of archaeological maize from Chincha analyzed at a target weight of 1.0 mg and used for all statistical analyses. S4 Fig. Bivariate plots of δ34S vs. C:S ratios and δ34S vs. N:S ratios of all archaeological maize from Chincha analyzed in this study. S1 Table. Avifauna results from Jahuay, Cerro Azul and Lo Demás. S2 Table. Summary statistics for Chincha maize and comparative sample from Chile. S3 Table. Comparison of estimates of isotopic space size from standard ellipse area (SEA) and kernel utilization density (KUD). S4 Table. Pair-wise isotopic space overlaps from standard ellipse area (SEA) and kernel utilization density (KUD).

    (DOCX)

    S1 Dataset. Twenty radiocarbon dates from eleven graves sampled for maize.

    (XLSX)

    pone.0341263.s002.xlsx (11.9KB, xlsx)
    S2 Dataset. All isotopic data and standards.

    (XLSX)

    pone.0341263.s003.xlsx (42.1KB, xlsx)
    Attachment

    Submitted filename: Response to Reviewers.docx

    pone.0341263.s004.docx (84.4KB, docx)
    Attachment

    Submitted filename: Response_to_Reviewers_auresp_2.docx

    pone.0341263.s005.docx (43.3KB, docx)
    Attachment

    Submitted filename: Response_to_Reviewers_auresp_3.docx

    pone.0341263.s006.docx (38.9KB, docx)

    Data Availability Statement

    All relevant data are within the paper and its Supporting information files.


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