Skip to main content
ACS AuthorChoice logoLink to ACS AuthorChoice
. 2026 Jan 24;66(3):1704–1714. doi: 10.1021/acs.jcim.5c02893

A Transferable Force Field for Simulating Adsorption in Metal–Organic Frameworks with Open Metal Sites Based on the 12–6–4 Lennard-Jones Potential

Meng Du , Alan Rodriguez , Matthew Z Lin , Haoyuan Chen †,‡,*
PMCID: PMC12900520  PMID: 41579381

Abstract

Metal–organic frameworks (MOFs) that contain coordinatively unsaturated open metal sites (OMSs) provide strong host–guest interactions, making them promising sorbents for low-concentration gas adsorption applications such as direct air capture and atmospheric water harvesting. However, accurately modeling host–guest interactions involving OMSs remains challenging for classical force fields (FFs) based on the 12–6 Lennard–Jones (LJ) potential, as the polarization effect of the guest molecule induced by the positively charged OMS is not considered. Here, we introduce an FF based on the 12–6–4 LJ potential, which incorporates charge–induced dipole interactions and is parametrized against a diverse set of host–guest potential energy surfaces (PESs) obtained from density functional theory (DFT). The resulting FF, trained on a generic trimetallic cluster, performs well in both host–guest binding energetics and gas adsorption isotherms across different OMS-containing MOFs, including MOF-74 series and Cu-BTC. These results highlight the excellent transferability of our approach and its potential to enhance the accuracy and robustness of high-throughput MOF discovery workflows, particularly for gas adsorption and separation in large and diverse MOF databases.


graphic file with name ci5c02893_0010.jpg


graphic file with name ci5c02893_0009.jpg

Introduction

Metal–organic frameworks (MOFs) have emerged as a versatile class of nanoporous materials with applications spanning gas adsorption, separation, catalysis and others. For gas adsorption/separation, the unique advantages of MOFs are their high porosity and tunable host–guest chemistry. Coordinatively unsaturated open metal sites (OMSs), which are seen in many popular MOFs such as MIL-101, MOF-74 and Cu-BTC, provide strong binding sites for guest molecules that enables enhanced uptake particularly at low concentrations. , However, accurate modeling of adsorption in OMS-containing MOFs remains challenging, as the OMS-guest interactions involve polarization effects which are not included in the framework of conventional force fields (FFs). This limits the accuracy and efficiency of high-throughput computational MOF discovery for adsorption applications, since MOFs with OMSs constitute a significant fraction of commonly used databases.

Despite the recent surge of machine learning interatomic potentials (MLIPs), classical FFs remain the “default” choice for grand-canonical Monte Carlo (GCMC) adsorption simulations due to their efficiency and interpretability. Generic FFs such as UFF and DREIDING are widely used in this field and have proven successful for many MOFs. However, they have been shown to yield inconsistent results in OMS-containing systems where polarization effects become non-negligible. Many efforts have been made to overcome this shortcoming. One could refit the FF parameters for a specific system (which might also involve using alternate functional forms for the FF, such as the Buckingham potential), but the transferability across different types of MOFs can be limited. For instance, the parameters fitted by Mercado et al. for Mg-MOF-74 produced significant deviations when applied to Mg2(dobdpc), a closely related analogue. Polarizable FFs have also been developed for GCMC adsorption simulations, ,,,− but the computational cost can be significantly higher due to the need of iterative self-consistent calculations.

The essential physics of OMS–guest binding can be approximated as the interaction between a point charge on the OMS and the dipole induced on the guest molecule by the electric field of that charge. Back polarization (the electric field of the guest acting on the OMS) and higher-order terms can be neglected, since the positively charged OMS is less polarizable than the guest. This charge-induced dipole interaction follows a r –4 dependence, where r is the interatomic distance, and can be incorporated into classical FFs by extending the standard 12–6 Lennard–Jones (LJ) potential to a 12–6–4 form. In this way, the essential interactions are captured while the simplicity of conventional FFs is retained, without requiring self-consistent iterations. This approach was pioneered by Li, Merz and co-workers for aqueous ions and has been widely applied in biomolecular simulations, and materials modeling. Recently, We have implemented the 12–6–4 FF in the widely used GCMC code RASPA and tested it on water adsorption in Mg-MOF-74. Without reparametrization, the 12–6–4 FF with the original parameters derived for aqueous Mg2+ ions was quite accurate in describing water binding on Mg-OMS and yielded a water adsorption isotherm that agreed much better with experiments than UFF did. Here, we present a systematic parametrization of the 12–6–4 FF for GCMC adsorption simulations. By having 60 metal-guest combinations from 12 common metals in MOFs and 5 representative guest molecules and fitting the coefficients of the r –4 term against density functional theory (DFT)-derived potential energy surfaces (PESs), we obtained an FF that agrees well with DFT on OMS-guest binding energies and demonstrates good transferability across different types of OMS-containing MOFs in terms of both host–guest binding energetics and simulated gas adsorption isotherms. These findings demonstrate the potential of our approach in enhancing high-throughput MOF discovery workflows, particularly for adsorption and separation in large-scale MOF databases that contain significant amounts of OMS-containing MOFs.

Methods

Generation of PESs with DFT

To represent the typical local coordination environment of OMSs in MOFs, a trimetallic cluster (TMC) (Figure ) as appeared in widely studied MOFs such as MIL-101 and PCN-250 was selected as the molecular model for FF parametrization. The chemical composition of TMC is M3O­(HCOO)6, where the sum of oxidation states for the three metal centers is +8 to ensure charge neutrality. This allows the incorporation of both +2 and +3 metals. Specifically, when the guest molecule-binding OMS was a + 2 metal (Mg­(II), Mn­(II), Fe­(II), Co­(II), Ni­(II), Cu­(II), or Zn­(II)), both of the two distal metal sites (spectators) were fixed as Al­(III). When the guest molecule-binding OMS was a + 3 metal (Mn­(III), Fe­(III), Co­(III), Al­(III), or Cr­(III)), the two distal ions were set as one Al­(III) and one Mg­(II). Closed-shell Al­(III) and Mg­(II) were chosen for distal metal sites to avoid potential complications in the total spin of the system.

1.

1

Structure of the TMC used for FF parametrization and the guest molecules considered. Left: guest molecules (NH3, C2H4, CH3OH, H2O, and CO2). Right: a representative DFT-optimized structure of CO2 binding at the open metal site (Cu2+) in the TMC, with the Al3+ centers located at distal positions. Color code: H–white, C–gray, N–cyan, O–red, Al–pink, Cu–blue.

For each of the 12 TMCs considered, its DFT-optimized geometry was combined with each of the five guest molecules (CO2, C2H4, CH3OH, H2O, and NH3) to generate a PES of TMC-guest binding energy as a function of OMS-guest distance r. The point on guest molecule used to calculate r from the OMS is the O atom for H2O and CH3OH, one of the O atoms for CO2, the N atom for NH3, and the center of two C atoms for C2H4. For all guest molecules except C2H4, the range of r was set to 1.8–2.7 Å with a 0.1 Å step size to ensure that the global minimum (often within 2.0–2.2 Å) was included. For C2H4, the range was adjusted to 2.1–3.0 Å, since the minimum often appear near 2.4–2.8 Å. All DFT calculations were carried out using Gaussian16 at the M06-L/def2-TZVP level of theory with Grimme’s DFT-D3 dispersion correction. This level of theory has been shown to perform reliably for related systems from extensive benchmarks. , For each metal-guest pair, the binding energy was defined as

EbindingDFT=ETMC+guestDFTETMCDFTEguestDFT 1

Formulation of the 12–6–4 FF

The 12–6–4 LJ-based FF potential energy as a function of interatomic distance r ij between atoms i and j has the following form:

Eij(rij)=4εij[(σijrij)12(σijrij)6]C4ijrij4+qiqj4πε0rij=C12ijrij12C6ijrij6C4ijrij4+qiqj4πε0rij 2

in which the first, second and last terms on the r.h.s. are the same as in conventional FFs such as UFF and DREIDING. The third term on the r.h.s. describes the interaction between a point charge and an induced dipole, so the C 4 parameter can be derived by

F(rij)=q4πε0εrrij2μind=αF(rij)=αq4πε0εrrij2Eijind(rij)=12μindF(rij)=12αF2(rij)=12α(q4πε0εrrij2)2=C4ijrij4C4ij=12α(q4πε0εr)2q2 3

where α is the polarizability of the guest, q is the charge on the metal center, ε r is the relative dielectric constant (set to 1 in this work), F(r ij ) is the electric field from the charge, and μ ind is the induced dipole on the guest. This provides the physical meaning of the additional r –4 term and suggests that the C 4 parameter for the same metal in different chemical environments should be scaled by the square of the metal atom’s partial charge.

Parametrization Workflow

The 12–6–4 FF was parametrized to fit the DFT-derived PESs of guest molecule binding on TMCs by minimizing the mean absolute error (MAE), in which C 12, C 6, and C 4 were treated as adjustable parameters for each OMS-guest atom pair. The guest atom is defined as C2H4: both C atoms; CO2: both O atoms; CH3OH and H2O: O atom; NH3: N atom. For other interactions, the standard 12–6 LJ potential was used. The MOF atoms were described using DREIDING (nonmetal) or UFF (metal). C2H4 and CH3OH were modeled with the TraPPE united-atom (UA) model, , while CO2 and NH3 were modeled with the TraPPE all-atom (AA) model. , For H2O, five widely used rigid modelsTIP3P, TIP4P, TIP4PEW, TIP5P, and TIP5PEwere tested, and the fitted parameters were found to be insensitive to the water model (Figure S24 in the Supporting Information). For consistency, the TIP4PEW model was used throughout this work. Lorentz–Berthelot mixing rules were used to obtain the pairwise 12–6 LJ parameters. All FF energy calculations were performed using our code FFEnergy (https://github.com/haoyuanchen/FFEnergy). The total host–guest binding energy is thus expressed as

Ebinding=ELJ,OMS‐guest1264+ELJ,others126+ECoulomb 4

Here, the 12–6–4 potential is applied exclusively to interactions between the open metal sites and guest molecules, while the conventional 12–6 potential is used for all remaining van der Waals interactions, and only E LJ was subject to parametrization. In the parameter optimization, the ranges for the parameters were defined as C 12: 106–109 K·Å12, C 6: 1–106 K·Å6, and C 4: 0–6 × C 6 K·Å4, in which the ranges for C 12 and C 6 were chosen after surveying UFF, DREIDING, and TraPPE parameters, ensuring that the search space remains broad yet physically meaningful. Here, K is used as the energy unit following the common practice in FF parametrization and GCMC simulations. For easier interpretation in chemistry context, the optimized parameters reported in Table have been converted from K to kJ/mol. The constraint that C 4 cannot be larger than 6 × C 6 was adapted from Li and Merz (more details are in the Supporting Information). Also, to avoid the fitting being skewed by a few outliers, all points in the PES with DFT binding energies higher than 12.5 kJ mol–1 (about 5 k B T at room temperature) were excluded from fitting, as those high energy configurations were largely inaccessible in GCMC simulations. E Coulomb was computed using CHELPG charges computed at the aforementioned M06-L-D3/def2-TZVP level.

1. Optimized 12–6–4 FF Parameters for Selected Metal–Guest Atom Pairs.

Guest: CO2 Pair atom: O
Metal C 12 [kJ mol–1 Å12] C 6 [kJ mol–1 Å6] C 4 [kJ mol–1 Å4]
Co(II) 152308.13 70.12 353.10
Cu(II) 95673.97 64.04 314.20
Fe(II) 178415.69 88.00 436.39
Mg(II) 101511.42 47.53 230.66
Mn(II) 187882.73 68.44 319.76
Ni(II) 133158.78 66.35 359.28
Zn(II) 135940.44 46.19 206.20
Guest: H2O (TIP4PEW) Pair atom: O
Metal C 12 [kJ mol–1 Å12] C 6 [kJ mol–1 Å6] C 4 [kJ mol–1 Å4]
Co(II) 176286.42 89.41 463.69
Cu(II) 123387.66 117.08 557.00
Fe(II) 189131.45 88.90 459.27
Mg(II) 119953.26 18.57 67.48
Mn(II) 246820.13 56.10 285.75
Ni(II) 154263.33 109.63 565.11
Zn(II) 215673.86 64.25 318.61

The particle swarm optimization (PSO) algorithm was used to efficiently sample the high-dimensional parameter space. The hyperparameters were optimized to improve accuracy and efficiency while preventing overfitting (see the Supporting Information for details). The workflow in Figure represents one complete PSO cycle. This procedure was independently repeated 10 times, and the final FF parameters for each metal–guest pair were determined as the representative closest to the geometric center among the 10 cycle representatives.

2.

2

Flowchart of a single PSO parameter fitting run. The full parametrization strategy repeats this process 10 times, followed by geometric-center-based selection of the final representative.

GCMC Simulations

Adsorption isotherms were simulated using GCMC in RASPA2. All MOF structures were taken directly from the QMOF database, where they had been optimized at the PBE-D3­(BJ) level , and the partial atomic charges were assigned using the DDEC method. In all simulations, the frameworks were treated as rigid, thus eliminating interactions between MOF atoms. The host–guest interactions were modeled using the 12–6 DREIDING­(nonmetal)/UFF­(metal), and the 12–6–4 FF overrode the 12–6 FF only for OMS-guest atom pairs (https://github.com/haoyuanchen/RASPA-tools/tree/master/LJ1264Potential). Guest–guest interactions were modeled using TraPPE. The Peng–Robinson equation of state was used to describe the implicit bulk phase, with the critical temperature, critical pressure and acentric factor taken from Poling et al.

For each state point in an adsorption isotherm, the GCMC simulation consisted of 100,000 production cycles after 10,000 initialization cycles. The number of MC moves in each cycle was max­(20, number of adsorbate molecules). Insertion, deletion, translation, rotation and reinsertion moves were all attempted with equal probability. A cutoff radius of 12.8 Å was applied, and long-range electrostatics was handled with Ewald summation with a precision of 10–6. Supercells were used to satisfy the minimum image convention: 4 × 2 × 2 for M-MOF-74; 2 × 2 × 2 for Cu-BTC.

Results and Discussion

Comparison of FF and DFT PESs

Parametrization: TMCs

As described in the Methods Section, C 12, C 6 and C 4 parameters were obtained for a total of 60 metal-guest atom pairs in TMCs. The optimized parameters between CO2, H2O and all metals used for GCMC simulations later in this work are summarized in Table , while the full set of parameters is provided in the Supporting Information (Table S4). One representative 12–6–4 PES for each guest molecule is shown in Figure , alongside the DFT reference and DREIDING/UFF comparisons. The complete set of PESs is provided in the Supporting Information (Figures S2–S13). As seen in the figures, the parametrized 12–6–4 FF consistently led to much better agreement with DFT, compared to DREIDING/UFF with largely overestimated the energies. For the entire data set, it is also clear from Figure that the 12–6–4 energies correlated much better with DFT energies. Compared to DREIDING/UFF, the MAEs were reduced from over 100 kJ mol–1 to less than 10 kJ mol–1. For H2O, we tested five water models (TIP3P, TIP4P, TIP4PEW, TIP5P, and TIP5PE) and no model dependence was observed (Figure S24). These results all showed that our parametrized 12–6–4 FF can precisely reproduce DFT PESs for OMS-guest binding, which is necessary for accurate GCMC simulations.

3.

3

Representative potential energy surface (PES) comparisons for five TMC–guest systems as a function of the metal–guest distance. DFT reference interaction energies (orange) are compared with predictions from DREIDING/UFF (blue) and the fitted 12–6–4 force field (green). Panels correspond to (a) Co3+–TMC with C2H4, (b) Mn3+–TMC with CH3OH, (c) Cu2+–TMC with CO2, (d) Mg2+–TMC with H2O (TIP4PEW), and (e) Ni2+–TMC with NH3. The black dashed line indicates zero binding energy (0 kJ mol–1).

4.

4

Correlation plots between FF (Y-axis) and DFT (X-axis) TMC-guest binding energies for all guest molecules: (a) C2H4, (b) CH3OH, (c) CO2, (d) H2O (TIP4PEW), and (e) NH3. Blue: DREIDING/UFF; red: parametrized 12–6–4 FF; black dashed line: parity line.

To further explore the parameter space, we also tested multiple alternative fitting protocols. These included 1) keeping the C 12 and C 6 parameters combined from DREIDING/UFF and TraPPE FFs, only fit C 4; 2) make C 4 proportional to ε of the guest atom (as ε reflects the polarizability α of the guest, which is proportional to C 4, see eq ). Both approaches reduce the parameter space, but both led to significantly higher MAEs (Figure S22). This suggested that refitting C 12, C 6, and C 4 together is necessary, which is consistent with a previous work showing that the 3-parameter 12–6–4 potential is necessary to ensure the robustness of the FF, while the 2-parameter 12–6 potential could lead to overfitting.

Transferability Test: MOF-74 and Cu-BTC

To test the transferability of our 12–6–4 FF parameters fitted to TMCs, we performed OMS-guest binding PES scan for two other types of popular OMS-containing MOFs: M-MOF-74 (M = Fe, Co, Cu, Mg, Mn, Ni, and Zn) and Cu-BTC, with the same five adsorbates NH3, C2H4, CH3OH, H2O, and CO2. In these DFT-referenced PES comparisons, the C 4 term was consistently adjusted to reflect differences in the metal partial charges between the TMC training models and the extended MOF systems, including both the M-MOF-74 series and Cu-BTC. Specifically, metal charges obtained from CHELPG analyses were used to rescale the magnitude of the C 4 contribution, ensuring a physically consistent treatment of charge–induced dipole interactions across different coordination environments. As seen from the correlation plots in Figure , the 12–6–4 FF still agreed much closer with DFT than DREIDING/UFF did, even though its parameters were not trained on these systems. All PESs for guest binding on Cu-BTC are shown in Figure , and all PESs for guest binding on M-MOF-74 are provided in the Supporting Information (Figures S14–S20). Again, the 12–6–4 PESs agreed very well with DFT, while DREIDING/UFF continued to overestimate the binding energies, particularly in the short-range. These results suggested that our 12–6–4 FF has excellent transferability and could significantly improve the reliability of GCMC simulation results for gas adsorption in OMS-containing MOFs.

5.

5

Correlation plots of classical versus DFT PES for MOF-74 series (a) and Cu-BTC (b). Each panel aggregates all metal–guest combinations for the five representative adsorbates­(C2H4, CH3OH, CO2, H2O (TIP4PEW), and NH3). Black dashed line: parity line. Blue: DREIDING/UFF; red: fitted 12–6–4.

6.

6

Potential energy surface (PES) comparisons for five Cu–BTC–guest systems as a function of the Cu–guest distance. DFT reference interaction energies (orange) are compared with predictions from DREIDING/UFF (blue) and the fitted 12–6–4 force field (green). Panels correspond to (a) H2O (TIP4PEW), (b) CH3OH, (c) CO2, (d) C2H4, and (e) NH3. The black dashed line indicates zero binding energy (0 kJ mol–1).

GCMC Simulations of Gas Adsorption Isotherms

Charge-Dependent Scaling of C 4

With the parametrized 12–6–4 FF showing excellent accuracy and transferability in terms of OMS-guest binding energies, we then tested it in GCMC simulations of gas adsorption in M-MOF-74 and Cu-BTC. To account for the difference in partial atomic charges of the same metal in different MOFs, the C 4 parameter in the GCMC simulations was scaled by C 4 = C 4 × (q M /q M )2, where q M is the partial charge of the metal atom, obtained from CHELPG (TMC) or DDEC (MOF). As mentioned above, this scaling method is based on the physical fact that C 4 reflects charge-induced dipole interactions and is proportional to q M (eq ). Details on partial atomic charges and scaling of C 4 are provided in the Supporting Information (Tables S1–S3).

GCMC simulations were performed to simulate CO2 and H2O adsorption in M-MOF-74 (M = Fe, Co, Cu, Mg, Mn, Ni, and Zn) as well as Cu-BTC. These two adsorbates were selected because of the larger amounts of experimental and simulation data available in the literature. For CO2, simulations were conducted over pressures from 1 Pa to 4.0 MPa at multiple temperatures (278, 296, 298, 313, 343, 393, and 473 K for M-MOF-74; 295, 298, 323, 348, 373, and 378 K for Cu-BTC) to compare with other results. For H2O, isotherms were computed at 298 K up to 5000 Pa. To account for the difference between ideal crystal structures used in simulations and real materials used in experiments, all simulated isotherms were uniformly scaled by the ratio between experimental and theoretical pore volumes of each MOF. For Cu-BTC, the experimental pore volume was taken as 0.658 cm3 g–1 reported by Wang et al., while the theoretical pore volume was 0.82 cm3 g–1 as calculated by Liu et al., which was also consistent with the upper bound of a wide set of experimental data. For M-MOF-74, Queen et al. have shown that experimental pore volumes are typically around 15% smaller than theoretical values. Therefore, a uniform scaling factor of 0.85 was applied to all M-MOF-74 adsorption isotherms for simplicity. The main text here focuses on the adsorption of CO2 and H2O in Mg-MOF-74, Co-MOF-74, and Cu-BTC at 298 K, which are among the most widely studied systems. The complete set of simulated GCMC isotherms, along with comparisons with other experimental and simulated data in the literature, are provided in Figures S25–S68 of the Supporting Information.

MOF-74

The simulated adsorption isotherms of H2O and CO2 in Co- and Mg-MOF-74 as well as previously reported experimental/simulated results are summarized in Figure . For H2O in Co-MOF-74 (Figure a), the experimental reference from Glover et al. shows a sharp step around 200 Pa, with saturation near 28 mol kg–1. Mercado et al. trained a FF specifically on Co-MOF-74, but it predicted a step that occurs at much lower pressure. The step predicted by our 12–6–4 FF trained on TMCs was at a slightly higher pressure but was closer to the experimental value than the step from Mercado’s simulations. For H2O in Mg-MOF-74 (Figure b), multiple sets of experimental results exhibited noticeable variation on both the saturation loading and the step location, as water adsorption in MOFs is intrinsically difficult to measure experimentally due to several factors including incomplete activation, insufficient equilibration, and residual moisture. The simulated results from Mercado again predicted a step at a much lower pressure, while our 12–6–4 FF results aligned well with the consensus/average of multiple experimental results, particularly with Yang’s Mg_C data.

7.

7

Comparison of experimental and simulated adsorption isotherms of H2O and CO2 in Co- and Mg-MOF-74 at 298 K. Panels correspond to (a) H2O adsorption in Co-MOF-74, (b) H2O adsorption in Mg-MOF-74, (c) CO2 adsorption in Co-MOF-74, and (d) CO2 adsorption in Mg-MOF-74. Experimental data from the literature are shown as filled squares, while simulation results reported in previous studies are shown as filled upward triangles. Results obtained from the present 12–6–4 force field are shown as filled green circles connected by green dashed lines.

For CO2 in Co-MOF-74 (Figure c), all experimental , and simulated , isotherms almost overlap, except for the one simulated using UFF. However, both Haldoupis and Mercado trained their FF specifically on Co-MOF-74, while our 12–6–4 FF was trained on TMCs. A similar situation was observed for CO2 in Mg-MOF-74 (Figure d), where the only outlier among all experimental ,, and simulated ,− isotherms was the one simulated using UFF. The agreement between (12–6–4) simulated and experimental isotherms for CO2 is even better compared to H2O, likely because strong hydrogen bonding and cooperative adsorption effects make H2O uptake more sensitive to subtle variations in the pore environment and host–guest interaction strength. The accuracy of our 12–6–4 FF was comparable with MLIPs, , which were significantly slower and required much more data for training.

Cu-BTC

The simulated adsorption isotherms of H2O and CO2 in Cu-BTC as well as previously reported experimental/simulated results are summarized in Figure . For H2O adsorption (Figure a), our simulated isotherm overall agreed well with experiments, ,, despite having a slightly higher pressure for the step. For CO2 adsorption (Figure b), all experimental and simulated isotherms including ours are closely aligned. The simulation by Yazaydin et al. using DREIDING/UFF slightly underestimated the adsorption, particularly at low to intermediate pressures.

8.

8

Comparison of experimental and simulated adsorption isotherms of H2O and CO2 in Cu-BTC at 298 K. Panels correspond to (a) H2O adsorption in Cu-BTC and (b) CO2 adsorption in Cu-BTC. Experimental data from the literature are shown as filled squares, while simulation results reported in previous studies are shown as filled upward triangles. Results obtained from the present 12–6–4 force field are shown as filled green circles connected by green dashed lines.

Overall, the GCMC results confirmed that our 12–6–4 FF is an accurate and transferable FF for the simulation of gas adsorption in OMS-containing MOFs.

Conclusion

In this work, we developed an accurate and transferable force field based on the 12–6–4 Lennard-Jones potential for simulating gas adsorption in MOFs with open metal sites. Parametrized against DFT-derived potential energy surfaces of 60 metal-guest pairs (12 metals × 5 guest molecules) in a generic trimetallic cluster model, our force field explicitly incorporates a r –4 polarization term to capture charge–induced dipole interactions which is absent in conventional force fields. The excellent accuracy and transferability of our force field is shown in the validation against other MOFs that also contain open metal sites, namely MOF-74 series and Cu-BTC. In terms of both host–guest binding potential energy surfaces and gas adsorption isotherms, our force field leads to better agreement with DFT and experimental data than not only conventional force fields like DREIDING and UFF but also some force fields specifically parametrized for those MOFs. This demonstrates the potential of our approach in improving the robustness of high-throughput computational screening over large and diverse MOF databases for adsorption and separation applications, as it does not require system-specific tuning of parameters and is much less computationally demanding than self-consistent polarizable force fields. Future work in our group aims to address the limitations of the current method–most notably the lack of universal mixing rules and the resulting reliance on explicitly fitted metal–guest interaction pairsthrough more fundamental studies of polarization and electrostatics in host–guest binding.

Supplementary Material

ci5c02893_si_001.pdf (30.7MB, pdf)
ci5c02893_si_002.zip (36.2KB, zip)

Acknowledgments

This work was supported by the U.S. Department of Energy, Office of Basic Energy Sciences, Division of Chemical Sciences, Geosciences and Biosciences under Award No. DE-SC0023454, as part of the Computational and Theoretical Chemistry Program, and the start-up funds provided by Southern Methodist University (SMU). M.D. is also supported by the John A. Maguire Fellowship in the Department of Chemistry at SMU. We would also like to acknowledge SMU O’Donnell Data Science and Research Computing Institute as well as the Texas Advanced Computing Center (TACC) for providing generous computational resources and excellent technical support.

The modified RASPA/RASPA2 force-field scripts used in this study are available at https://github.com/haoyuanchen/RASPA-tools/tree/master/LJ1264Potential. The FFEnergy package for classical force-field binding-energy calculations, together with the PSO optimization codes, can be accessed at https://github.com/haoyuanchen/FFEnergy. All representative input files and structural models employed in this work are provided in the Supporting Information.

The Supporting Information is available free of charge at https://pubs.acs.org/doi/10.1021/acs.jcim.5c02893.

  • All fitted 12–6–4 force field parameters and all CHELPG/DDEC partial charges, potential energy surfaces for all five adsorbates binding on all TMC clusters, M-MOF-74 clusters, and Cu-BTC cluster, comparison of different parametrization schemes, CO2 and H2O adsorption isotherms in all MOFs considered in this work, sample Gaussian and RASPA input files (PDF)

  • Cartesian coordinates of cluster models and crystallographic information files of periodic structures (ZIP)

M.D.: Data Generation, Data Curation, Data Analysis, Coding, Visualization, Literature Survey and Manuscript Writing. A.R.: Data Generation, Data Curation, Data Analysis. M.Z.L.: Data Generation. H.C.: Conceptualization, Supervision, Project Management, Funding Acquisition, Literature Survey and Manuscript Writing.

The authors declare no competing financial interest.

References

  1. Furukawa H., Cordova K. E., O’Keeffe M., Yaghi O. M.. The Chemistry and Applications of Metal-Organic Frameworks. Science. 2013;341:1230444. doi: 10.1126/science.1230444. [DOI] [PubMed] [Google Scholar]
  2. Lee J., Farha O. K., Roberts J., Scheidt K. A., Nguyen S. T., Hupp J. T.. Metal–organic framework materials as catalysts. Chem. Soc. Rev. 2009;38:1450–1459. doi: 10.1039/b807080f. [DOI] [PubMed] [Google Scholar]
  3. Li J.-R., Sculley J., Zhou H.-C.. Metal–organic frameworks for separations. Chem. Rev. 2012;112:869–932. doi: 10.1021/cr200190s. [DOI] [PubMed] [Google Scholar]
  4. Férey G., Mellot-Draznieks C., Serre C., Millange F., Dutour J., Surblé S., Margiolaki I.. A chromium terephthalate-based solid with unusually large pore volumes and surface area. Science. 2005;309:2040–2042. doi: 10.1126/science.1116275. [DOI] [PubMed] [Google Scholar]
  5. Rosi N. L., Kim J., Eddaoudi M., Chen B., O’Keeffe M., Yaghi O. M.. Rod packings and metal- organic frameworks constructed from rod-shaped secondary building units. J. Am. Chem. Soc. 2005;127:1504–1518. doi: 10.1021/ja045123o. [DOI] [PubMed] [Google Scholar]
  6. Chui S. S.-Y., Lo S. M.-F., Charmant J. P., Orpen A. G., Williams I. D.. A chemically functionalizable nanoporous material [Cu3 (TMA) 2 (H2O) 3] n. Science. 1999;283:1148–1150. doi: 10.1126/science.283.5405.1148. [DOI] [PubMed] [Google Scholar]
  7. Kokcam-Demir U., Goldman A., Esrafili L., Gharib M., Morsali A., Weingart O., Janiak C.. Coordinatively unsaturated metal sites (open metal sites) in metal-organic frameworks: design and applications. Chem. Soc. Rev. 2020;49:2751–2798. doi: 10.1039/C9CS00609E. [DOI] [PubMed] [Google Scholar]
  8. Hall J. N., Bollini P.. Structure, characterization, and catalytic properties of open-metal sites in metal organic frameworks. React. Chem. Eng. 2019;4:207–222. doi: 10.1039/C8RE00228B. [DOI] [Google Scholar]
  9. Becker T. M., Lin L.-C., Dubbeldam D., Vlugt T. J.. Polarizable force field for CO2 in M-MOF-74 derived from quantum mechanics. J. Phys. Chem. C. 2018;122:24488–24498. doi: 10.1021/acs.jpcc.8b08639. [DOI] [PMC free article] [PubMed] [Google Scholar]
  10. Li Y., Jin X., Moubarak E., Smit B.. A Refined Set of Universal Force Field Parameters for Some Metal Nodes in Metal–Organic Frameworks. J. Chem. Theory Comput. 2024;20:10540–10552. doi: 10.1021/acs.jctc.4c01113. [DOI] [PMC free article] [PubMed] [Google Scholar]
  11. Hogan A., Ritter L., Space B.. The PHAST 2.0 Force Field for General Small Molecule and Materials Simulations. J. Chem. Theory Comput. 2025;21:6034. doi: 10.1021/acs.jctc.5c00134. [DOI] [PubMed] [Google Scholar]
  12. Ritter L., Tudor B., Hogan A., Pham T., Space B.. PHAHST Potential: Modeling Sorption in a Dispersion-Dominated Environment. J. Chem. Theory Comput. 2024;20:5570–5582. doi: 10.1021/acs.jctc.4c00226. [DOI] [PubMed] [Google Scholar]
  13. Tang H., Jiang J.. In silico screening and design strategies of ethane-selective metal-organic frameworks for ethane/ethylene separation. AIChE J. 2021;67:e17025. doi: 10.1002/aic.17025. [DOI] [Google Scholar]
  14. Mashhadimoslem H., Abdol M. A., Karimi P., Zanganeh K., Shafeen A., Elkamel A., Kamkar M.. Computational and Machine Learning Methods for CO2 Capture Using Metal–rganic Frameworks. ACS Nano. 2024;18:23842–23875. doi: 10.1021/acsnano.3c13001. [DOI] [PubMed] [Google Scholar]
  15. Goeminne R., Vanduyfhuys L., Van Speybroeck V., Verstraelen T.. DFT-Quality Adsorption Simulations in Metal-Organic Frameworks Enabled by Machine Learning Potentials. J. Chem. Theory Comput. 2023;19:6313–6325. doi: 10.1021/acs.jctc.3c00495. [DOI] [PubMed] [Google Scholar]; PMID: 37642314.
  16. Deringer V. L., Caro M. A., Csányi G.. Machine learning interatomic potentials as emerging tools for materials science. Adv. Mater. 2019;31:1902765. doi: 10.1002/adma.201902765. [DOI] [PubMed] [Google Scholar]
  17. Zuo Y., Chen C., Li X., Deng Z., Chen Y., Behler J., Csányi G., Shapeev A. V., Thompson A. P., Wood M. A.. et al. Performance and cost assessment of machine learning interatomic potentials. J. Phys. Chem. A. 2020;124:731–745. doi: 10.1021/acs.jpca.9b08723. [DOI] [PubMed] [Google Scholar]
  18. Mishin Y.. Machine-learning interatomic potentials for materials science. Acta Mater. 2021;214:116980. doi: 10.1016/j.actamat.2021.116980. [DOI] [Google Scholar]
  19. Rappe A. K., Casewit C. J., Colwell K. S., Goddard W. A. I., Skiff W. M.. UFF, a full periodic table force field for molecular mechanics and molecular dynamics simulations. J. Am. Chem. Soc. 1992;114:10024–10035. doi: 10.1021/ja00051a040. [DOI] [Google Scholar]
  20. Mayo S. L., Olafson B. D., Goddard W. A.. DREIDING: a generic force field for molecular simulations. J. Phys. Chem. 1990;94:8897–8909. doi: 10.1021/j100389a010. [DOI] [Google Scholar]
  21. Getman R. B., Bae Y.-S., Wilmer C. E., Snurr R. Q.. Review and analysis of molecular simulations of methane, hydrogen, and acetylene storage in metal–organic frameworks. Chem. Rev. 2012;112:703–723. doi: 10.1021/cr200217c. [DOI] [PubMed] [Google Scholar]
  22. Formalik F., Shi K., Joodaki F., Wang X., Snurr R. Q.. Exploring the Structural, Dynamic, and Functional Properties of Metal-Organic Frameworks through Molecular Modeling. Adv. Funct. Mater. 2024;34:2308130. doi: 10.1002/adfm.202308130. [DOI] [Google Scholar]
  23. Fang H., Demir H., Kamakoti P., Sholl D. S.. Recent developments in first-principles force fields for molecules in nanoporous materials. J. Mater. Chem. A. 2014;2:274–291. doi: 10.1039/C3TA13073H. [DOI] [Google Scholar]
  24. Demir H., Daglar H., Gulbalkan H. C., Aksu G. O., Keskin S.. Recent advances in computational modeling of MOFs: From molecular simulations to machine learning. Coord. Chem. Rev. 2023;484:215112. doi: 10.1016/j.ccr.2023.215112. [DOI] [Google Scholar]
  25. Daglar H., Gulbalkan H. C., Aksu G. O., Keskin S.. Computational simulations of metal-organic frameworks to enhance adsorption applications. Adv. Mater. 2025;37:2405532. doi: 10.1002/adma.202405532. [DOI] [PMC free article] [PubMed] [Google Scholar]
  26. Peng X., Lin L.-C., Sun W., Smit B.. Water adsorption in metal-organic frameworks with open–metal sites. AIChE J. 2015;61:677–687. doi: 10.1002/aic.14707. [DOI] [Google Scholar]
  27. Fischer M., Gomes J. R., Fröba M., Jorge M.. Modeling adsorption in metal-organic frameworks with open metal sites: propane/propylene separations. Langmuir. 2012;28:8537–8549. doi: 10.1021/la301215y. [DOI] [PubMed] [Google Scholar]
  28. Lamia N., Jorge M., Granato M. A., Paz F. A. A., Chevreau H., Rodrigues A. E.. Adsorption of propane, propylene and isobutane on a metal–organic framework: Molecular simulation and experiment. Chem. Eng. Sci. 2009;64:3246–3259. doi: 10.1016/j.ces.2009.04.010. [DOI] [Google Scholar]
  29. Chen L., Grajciar L., Nachtigall P., Düren T.. Accurate prediction of methane adsorption in a metal–organic framework with unsaturated metal sites by direct implementation of an ab initio derived potential energy surface in GCMC simulation. J. Phys. Chem. C. 2011;115:23074–23080. doi: 10.1021/jp2090878. [DOI] [Google Scholar]
  30. Dzubak A. L., Lin L.-C., Kim J., Swisher J. A., Poloni R., Maximoff S. N., Smit B., Gagliardi L.. Ab initio carbon capture in open-site metal–organic frameworks. Nat. Chem. 2012;4:810–816. doi: 10.1038/nchem.1432. [DOI] [PubMed] [Google Scholar]
  31. Haldoupis E., Borycz J., Shi H., Vogiatzis K. D., Bai P., Queen W. L., Gagliardi L., Siepmann J. I.. Ab initio derived force fields for predicting CO2 adsorption and accessibility of metal sites in the metal–organic frameworks M-MOF-74 (M= Mn, Co, Ni, Cu) J. Phys. Chem. C. 2015;119:16058–16071. doi: 10.1021/acs.jpcc.5b03700. [DOI] [Google Scholar]
  32. Zang J., Nair S., Sholl D. S.. Prediction of water adsorption in copper-based metal-organic frameworks using force fields derived from dispersion-corrected DFT calculations. J. Phys. Chem. C. 2013;117:7519–7525. doi: 10.1021/jp310497u. [DOI] [Google Scholar]
  33. Mercado R., Vlaisavljevich B., Lin L.-C., Lee K., Lee Y., Mason J. A., Xiao D. J., Gonzalez M. I., Kapelewski M. T., Neaton J. B.. et al. Force field development from periodic density functional theory calculations for gas separation applications using metal-organic frameworks. J. Phys. Chem. C. 2016;120:12590–12604. doi: 10.1021/acs.jpcc.6b03393. [DOI] [Google Scholar]
  34. Jorge M., Fischer M., Gomes J. R., Siquet C., Santos J. C., Rodrigues A. E.. Accurate model for predicting adsorption of olefins and paraffins on MOFs with open metal sites. Ind. Eng. Chem. Res. 2014;53:15475–15487. doi: 10.1021/ie500310c. [DOI] [Google Scholar]
  35. McCready C., Asif K., Blaney R., Gomes J. R., Fletcher A., Jorge M.. Systematic assessment of generic force fields for CO2 adsorption in metal-organic frameworks. Micropor. Mesopor. Mater. 2025;397:113788. doi: 10.1016/j.micromeso.2025.113788. [DOI] [Google Scholar]
  36. Cho Y., Teetz J., Kulik H. J.. Assessing UFF and DFT-Tuned Force Fields for Predicting Experimental Isotherms of MOFs. J. Chem. Inf. Model. 2025;65:3451–3460. doi: 10.1021/acs.jcim.4c02044. [DOI] [PubMed] [Google Scholar]
  37. Schmidt J., Yu K., McDaniel J. G.. Transferable next-generation force fields from simple liquids to complex materials. Acc. Chem. Res. 2015;48:548–556. doi: 10.1021/ar500272n. [DOI] [PubMed] [Google Scholar]
  38. Becker T. M., Heinen J., Dubbeldam D., Lin L.-C., Vlugt T. J.. Polarizable force fields for CO2 and CH4 adsorption in M-MOF-74. J. Phys. Chem. C. 2017;121:4659–4673. doi: 10.1021/acs.jpcc.6b12052. [DOI] [PMC free article] [PubMed] [Google Scholar]
  39. Becker T. M., Luna-Triguero A., Vicent-Luna J. M., Lin L.-C., Dubbeldam D., Calero S., Vlugt T. J.. Potential of polarizable force fields for predicting the separation performance of small hydrocarbons in M-MOF-74. Phys. Chem. Chem. Phys. 2018;20:28848–28859. doi: 10.1039/C8CP05750H. [DOI] [PubMed] [Google Scholar]
  40. Stone, A. The Theory of Intermolecular Forces; Oxford University Press, 2013. [Google Scholar]
  41. Li P., Merz K. M. Jr.. Taking into account the ion-induced dipole interaction in the nonbonded model of ions. J. Chem. Theory Comput. 2014;10:289–297. doi: 10.1021/ct400751u. [DOI] [PMC free article] [PubMed] [Google Scholar]
  42. Li P., Song L. F., Merz K. M. Jr.. Parameterization of highly charged metal ions using the 12–6-4 LJ-type nonbonded model in explicit water. J. Phys. Chem. B. 2015;119:883–895. doi: 10.1021/jp505875v. [DOI] [PMC free article] [PubMed] [Google Scholar]
  43. Li P., Merz K. M. Jr.. Metal ion modeling using classical mechanics. Chem. Rev. 2017;117:1564–1686. doi: 10.1021/acs.chemrev.6b00440. [DOI] [PMC free article] [PubMed] [Google Scholar]
  44. Kantakevičius P., Mathiah C., Johannissen L. O., Hay S.. Chelator-Based Parameterization of the 12–6-4 Lennard-Jones Molecular Mechanics Potential for More Realistic Metal Ion-Protein Interactions. J. Chem. Theory Comput. 2022;18:2367–2374. doi: 10.1021/acs.jctc.1c00898. [DOI] [PMC free article] [PubMed] [Google Scholar]
  45. Wang L., Liu R., Li F., Meng Y., Lu H.. Unveiling the novel characteristics of IGPD polymer and inhibitors binding affinities using 12–6-4 LJ-type nonbonded Mn2+ model. J. Mol. Liq. 2021;322:114992. doi: 10.1016/j.molliq.2020.114992. [DOI] [Google Scholar]
  46. MacDermott-Opeskin H., McDevitt C. A., O’Mara M. L.. Comparing Nonbonded Metal Ion Models in the Divalent Cation Binding Protein PsaA. J. Chem. Theory Comput. 2020;16:1913–1923. doi: 10.1021/acs.jctc.9b01180. [DOI] [PubMed] [Google Scholar]
  47. Sengupta A., Li Z., Song L. F., Li P., Merz K. M. Jr.. Parameterization of monovalent ions for the OPC3, OPC, TIP3P-FB, and TIP4P-FB water models. J. Chem. Inf. Model. 2021;61:869–880. doi: 10.1021/acs.jcim.0c01390. [DOI] [PMC free article] [PubMed] [Google Scholar]
  48. Turupcu A., Tirado-Rives J., Jorgensen W. L.. Explicit Representation of Cation- π Interactions in Force Fields with 1/r 4 Nonbonded Terms. J. Chem. Theory Comput. 2020;16:7184–7194. doi: 10.1021/acs.jctc.0c00847. [DOI] [PMC free article] [PubMed] [Google Scholar]
  49. Zuo Z., Liu J.. Assessing the performance of the nonbonded Mg2+ models in a two-metal-dependent ribonuclease. J. Chem. Inf. Model. 2019;59:399–408. doi: 10.1021/acs.jcim.8b00627. [DOI] [PubMed] [Google Scholar]
  50. Panteva M. T., Giambaşu G. M., York D. M.. Comparison of structural, thermodynamic, kinetic and mass transport properties of Mg2+ ion models commonly used in biomolecular simulations. J. Comput. Chem. 2015;36:970–982. doi: 10.1002/jcc.23881. [DOI] [PMC free article] [PubMed] [Google Scholar]
  51. Kottayil A., Prakash M. S., Swathi R. S.. Cation-π Interactions Involving Graphynes: An Intermolecular Force Field Formulation Featuring Ion–Induced Dipole Effects. J. Phys. Chem. C. 2025;129:14130–14144. doi: 10.1021/acs.jpcc.5c02618. [DOI] [Google Scholar]
  52. Moreno Martinez D., Guillaumont D., Guilbaud P.. Force Field Parameterization of Actinyl Molecular Cations Using the 12–6-4 Model. J. Chem. Inf. Model. 2022;62:2432–2445. doi: 10.1021/acs.jcim.2c00153. [DOI] [PubMed] [Google Scholar]
  53. Wu J., Liao C., Li T., Zhou J., Zhang L., Wang J.-Q., Li G., Li X.. Metal-coordinated polybenzimidazole membranes with preferential K+ transport. Nat. Commun. 2023;14:1149. doi: 10.1038/s41467-023-36711-w. [DOI] [PMC free article] [PubMed] [Google Scholar]
  54. Dubbeldam D., Calero S., Ellis D. E., Snurr R. Q.. RASPA: molecular simulation software for adsorption and diffusion in flexible nanoporous materials. Mol. Simul. 2016;42:81–101. doi: 10.1080/08927022.2015.1010082. [DOI] [Google Scholar]
  55. Leem A. Y., Chen H.. Simulating water adsorption in metal-organic frameworks with open metal sites using the 12–6-4 Lennard-Jones potential. Mol. Simul. 2023;49:1135–1142. doi: 10.1080/08927022.2023.2220411. [DOI] [Google Scholar]
  56. Feng D., Wang K., Wei Z., Chen Y.-P., Simon C. M., Arvapally R. K., Martin R. L., Bosch M., Liu T.-F., Fordham S.. et al. Kinetically tuned dimensional augmentation as a versatile synthetic route towards robust metal–organic frameworks. Nat. Commun. 2014;5:5723. doi: 10.1038/ncomms6723. [DOI] [PubMed] [Google Scholar]
  57. Frisch, M. J. ; et al. Gaussiañ16, Revision C.02; Gaussian Inc.: Wallingford, CT, 2016. [Google Scholar]
  58. Zhao Y., Truhlar D. G.. A new local density functional for main-group thermochemistry, transition metal bonding, thermochemical kinetics, and noncovalent interactions. J. Chem. Phys. 2006;125:194101. doi: 10.1063/1.2370993. [DOI] [PubMed] [Google Scholar]
  59. Weigend F., Ahlrichs R.. Balanced basis sets of split valence, triple zeta valence and quadruple zeta valence quality for H to Rn: Design and assessment of accuracy. Phys. Chem. Chem. Phys. 2005;7:3297. doi: 10.1039/b508541a. [DOI] [PubMed] [Google Scholar]
  60. Grimme S., Antony J., Ehrlich S., Krieg H.. A consistent and accurate ab initio parametrization of density functional dispersion correction (DFT-D) for the 94 elements H-Pu. J. Chem. Phys. 2010;132:154104. doi: 10.1063/1.3382344. [DOI] [PubMed] [Google Scholar]
  61. Nazarian D., Ganesh P., Sholl D. S.. Benchmarking density functional theory predictions of framework structures and properties in a chemically diverse test set of metal-organic frameworks. J. Mater. Chem. A. 2015;3:22432–22440. doi: 10.1039/C5TA03864B. [DOI] [Google Scholar]
  62. Ernst M., Evans J. D., Gryn’ova G.. Host–guest interactions in framework materials: Insight from modeling. Chem. Phys. Rev. 2023;4:041303. doi: 10.1063/5.0144827. [DOI] [Google Scholar]
  63. Smith M., Khatiwada R., Li P.. Exploring Ion Polarizabilities and Their Correlation with van der Waals Radii: A Theoretical Investigation. J. Chem. Theory Comput. 2024;20:8505–8516. doi: 10.1021/acs.jctc.4c00632. [DOI] [PubMed] [Google Scholar]; PMID: 39340455.
  64. Wick C. D., Martin M. G., Siepmann J. I.. Transferable Potentials for Phase Equilibria. 4. United-Atom Description of Linear and Branched Alkenes and Alkylbenzenes. J. Phys. Chem. B. 2000;104:8008–8016. doi: 10.1021/jp001044x. [DOI] [Google Scholar]
  65. Chen B., Potoff J. J., Siepmann J. I.. Monte Carlo Calculations for Alcohols and Their Mixtures with Alkanes. Transferable Potentials for Phase Equilibria. 5. United-Atom Description of Primary, Secondary, and Tertiary Alcohols. J. Phys. Chem. B. 2001;105:3093–3104. doi: 10.1021/jp003882x. [DOI] [Google Scholar]
  66. Potoff J. J., Siepmann J. I.. Vapor–liquid equilibria of mixtures containing alkanes, carbon dioxide, and nitrogen. AIChE J. 2001;47:1676–1682. doi: 10.1002/aic.690470719. [DOI] [Google Scholar]
  67. Zhang L., Siepmann J. I.. Development of the trappe force field for ammonia. Collect. Czech. Chem. Commun. 2010;75:577–591. doi: 10.1135/cccc2009540. [DOI] [Google Scholar]
  68. Jorgensen W. L., Chandrasekhar J., Madura J. D., Impey R. W., Klein M. L.. Comparison of simple potential functions for simulating liquid water. J. Chem. Phys. 1983;79:926–935. doi: 10.1063/1.445869. [DOI] [Google Scholar]
  69. Horn H. W., Swope W. C., Pitera J. W., Madura J. D., Dick T. J., Hura G. L., Head-Gordon T.. Development of an improved four-site water model for biomolecular simulations: TIP4P-Ew. J. Chem. Phys. 2004;120:9665–9678. doi: 10.1063/1.1683075. [DOI] [PubMed] [Google Scholar]
  70. Mahoney M. W., Jorgensen W. L.. A five-site model for liquid water and the reproduction of the density anomaly by rigid, nonpolarizable potential functions. J. Chem. Phys. 2000;112:8910–8922. doi: 10.1063/1.481505. [DOI] [Google Scholar]
  71. Rick S. W.. A reoptimization of the five-site water potential (TIP5P) for use with Ewald sums. J. Chem. Phys. 2004;120:6085–6093. doi: 10.1063/1.1652434. [DOI] [PubMed] [Google Scholar]
  72. Breneman C. M., Wiberg K. B.. Determining atom-centered monopoles from molecular electrostatic potentials. The need for high sampling density in formamide conformational analysis. J. Comput. Chem. 1990;11:361–373. doi: 10.1002/jcc.540110311. [DOI] [Google Scholar]
  73. Kennedy J., Eberhart R.. Particle swarm optimization. Proceedings of ICNN’95 - International Conference on Neural Networks. 1995;4:1942–1948. doi: 10.1109/ICNN.1995.488968. [DOI] [Google Scholar]
  74. Rosen A. S., Iyer S. M., Ray D., Yao Z., Aspuru-Guzik A., Gagliardi L., Notestein J. M., Snurr R. Q.. Machine learning the quantum-chemical properties of metal-organic frameworks for accelerated materials discovery. Matter. 2021;4:1578–1597. doi: 10.1016/j.matt.2021.02.015. [DOI] [PMC free article] [PubMed] [Google Scholar]
  75. Perdew J. P., Burke K., Ernzerhof M.. Generalized Gradient Approximation Made Simple. Phys. Rev. Lett. 1996;77:3865–3868. doi: 10.1103/PhysRevLett.77.3865. [DOI] [PubMed] [Google Scholar]
  76. Manz T. A.. Introducing DDEC6 atomic population analysis: part 3. Comprehensive method to compute bond orders. RSC Adv. 2017;7:45552–45581. doi: 10.1039/C7RA07400J. [DOI] [Google Scholar]
  77. Peng D.-Y., Robinson D. B.. A new two-constant equation of state. Industrial & Engineering Chemistry Fundamentals. 1976;15:59–64. doi: 10.1021/i160057a011. [DOI] [Google Scholar]
  78. Poling, B. E. ; Prausnitz, J. M. ; John Paul, O. ; Reid, R. C. . The properties of gases and liquids; McGraw-Hill: New York, 2001; Vol. 5. [Google Scholar]
  79. Smith M., Li Z., Landry L., Merz K. M. Jr., Li P.. Consequences of Overfitting the van der Waals Radii of Ions. J. Chem. Theory Comput. 2023;19:2064–2074. doi: 10.1021/acs.jctc.2c01255. [DOI] [PubMed] [Google Scholar]
  80. Wang Q. M., Shen D., Bülow M., Lau M. L., Deng S., Fitch F. R., Lemcoff N. O., Semanscin J.. Metallo-organic molecular sieve for gas separation and purification. Micropor. Mesopor.Mater. 2002;55:217–230. doi: 10.1016/S1387-1811(02)00405-5. [DOI] [Google Scholar]
  81. Liu J., Culp J. T., Natesakhawat S., Bockrath B. C., Zande B., Sankar S., Garberoglio G., Johnson J. K.. Experimental and theoretical studies of gas adsorption in Cu3 (BTC) 2: an effective activation procedure. J. Phys. Chem. C. 2007;111:9305–9313. doi: 10.1021/jp071449i. [DOI] [Google Scholar]
  82. Queen W. L., Hudson M. R., Bloch E. D., Mason J. A., Gonzalez M. I., Lee J. S., Gygi D., Howe J. D., Lee K., Darwish T. A.. et al. Comprehensive study of carbon dioxide adsorption in the metal–organic frameworks M 2 (dobdc)­(M= Mg, Mn, Fe, Co, Ni, Cu, Zn) Chem. Sci. 2014;5:4569–4581. doi: 10.1039/C4SC02064B. [DOI] [Google Scholar]
  83. Glover T. G., Peterson G. W., Schindler B. J., Britt D., Yaghi O.. MOF-74 building unit has a direct impact on toxic gas adsorption. Chem. Eng. Sci. 2011;66:163–170. doi: 10.1016/j.ces.2010.10.002. [DOI] [Google Scholar]
  84. Schoenecker P. M., Carson C. G., Jasuja H., Flemming C. J., Walton K. S.. Effect of water adsorption on retention of structure and surface area of metal-organic frameworks. Ind. Eng. Chem. Res. 2012;51:6513–6519. doi: 10.1021/ie202325p. [DOI] [Google Scholar]
  85. Yang D.-A., Cho H.-Y., Kim J., Yang S.-T., Ahn W.-S.. CO 2 capture and conversion using Mg-MOF-74 prepared by a sonochemical method. Energy Environ. Sci. 2012;5:6465–6473. doi: 10.1039/C1EE02234B. [DOI] [Google Scholar]
  86. Queen W. L., Hudson M. R., Bloch E. D., Mason J. A., Gonzalez M. I., Lee J. S., Gygi D., Howe J. D., Lee K., Darwish T. A.. et al. Comprehensive study of carbon dioxide adsorption in the metal-organic frameworks M 2 (dobdc)­(M= Mg, Mn, Fe, Co, Ni, Cu, Zn) Chem. Sci. 2014;5:4569–4581. doi: 10.1039/C4SC02064B. [DOI] [Google Scholar]
  87. Yu D., Yazaydin A. O., Lane J. R., Dietzel P. D., Snurr R. Q.. A combined experimental and quantum chemical study of CO 2 adsorption in the metal-organic framework CPO-27 with different metals. Chem. Sci. 2013;4:3544–3556. doi: 10.1039/c3sc51319j. [DOI] [Google Scholar]
  88. Haldoupis E., Borycz J., Shi H., Vogiatzis K. D., Bai P., Queen W. L., Gagliardi L., Siepmann J. I.. Ab initio derived force fields for predicting CO2 adsorption and accessibility of metal sites in the metal–organic frameworks M-MOF-74 (M= Mn, Co, Ni, Cu) J. Phys. Chem. C. 2015;119:16058–16071. doi: 10.1021/acs.jpcc.5b03700. [DOI] [Google Scholar]
  89. Dietzel P. D., Besikiotis V., Blom R.. Application of metal-organic frameworks with coordinatively unsaturated metal sites in storage and separation of methane and carbon dioxide. J. Mater. Chem. 2009;19:7362–7370. doi: 10.1039/b911242a. [DOI] [Google Scholar]
  90. Goeminne R., Vanduyfhuys L., Van Speybroeck V., Verstraelen T.. DFT-Quality adsorption simulations in metal–organic frameworks enabled by machine learning Potentials. J. Chem. Theory Comput. 2023;19:6313–6325. doi: 10.1021/acs.jctc.3c00495. [DOI] [PubMed] [Google Scholar]
  91. Hou X.-J., He P., Li H., Wang X.. Understanding the adsorption mechanism of C2H2, CO2, and CH4 in isostructural metal–organic frameworks with coordinatively unsaturated metal sites. J. Phys. Chem. C. 2013;117:2824–2834. doi: 10.1021/jp310517r. [DOI] [Google Scholar]
  92. Tayfuroglu O., Keskin S.. Modeling CO2 Adsorption in Flexible MOFs with Open Metal Sites via Fragment-Based Neural Network Potentials. J. Chem. Phys. 2025;163:054704. doi: 10.1063/5.0280741. [DOI] [PubMed] [Google Scholar]
  93. Liang Z., Marshall M., Chaffee A. L.. Comparison of Cu-BTC and zeolite 13X for adsorbent based CO2 separation. Energy Procedia. 2009;1:1265–1271. doi: 10.1016/j.egypro.2009.01.166. [DOI] [Google Scholar]
  94. Millward A. R., Yaghi O. M.. Metal- organic frameworks with exceptionally high capacity for storage of carbon dioxide at room temperature. J. Am. Chem. Soc. 2005;127:17998–17999. doi: 10.1021/ja0570032. [DOI] [PubMed] [Google Scholar]
  95. Rios R. B., Correia L. S., Bastos-Neto M., Torres A. E. B., Hatimondi S. A., Ribeiro A. M., Rodrigues A. E., Cavalcante C. L. Jr., de Azevedo D. C.. Evaluation of carbon dioxide-nitrogen separation through fixed bed measurements and simulations. Adsorption. 2014;20:945–957. doi: 10.1007/s10450-014-9639-3. [DOI] [Google Scholar]
  96. Yazaydın A. O., Benin A. I., Faheem S. A., Jakubczak P., Low J. J., Willis R. R., Snurr R. Q.. Enhanced CO2 adsorption in metal-organic frameworks via occupation of open-metal sites by coordinated water molecules. Chem. Mater. 2009;21:1425–1430. doi: 10.1021/cm900049x. [DOI] [Google Scholar]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

ci5c02893_si_001.pdf (30.7MB, pdf)
ci5c02893_si_002.zip (36.2KB, zip)

Data Availability Statement

The modified RASPA/RASPA2 force-field scripts used in this study are available at https://github.com/haoyuanchen/RASPA-tools/tree/master/LJ1264Potential. The FFEnergy package for classical force-field binding-energy calculations, together with the PSO optimization codes, can be accessed at https://github.com/haoyuanchen/FFEnergy. All representative input files and structural models employed in this work are provided in the Supporting Information.


Articles from Journal of Chemical Information and Modeling are provided here courtesy of American Chemical Society

RESOURCES