Abstract
Proopiomelanocortin (POMC) is a precursor polypeptide that undergoes extensive, tissue-specific post-translational processing. It is expressed in several tissues, including pituitary gland, hypothalamus, brain stem, and skin. The hypothalamic POMC neurons in the arcuate nucleus are major neuronal populations involved in the regulation of body weight. In these neurons, POMC is processed into several peptides, among them the anorexigenic alpha-melanocyte stimulating hormone. Thus, the POMC neurons in the ARC have been named “satiety” neurons and are highly desirable drug targets. Here, we performed CRISPR/Cas9-mediated insertion of tdTomato reporter at the endogenous POMC locus, enabling direct visualization of POMC expression through tdTomato fluorescence in human pluripotent stem cell (hPSC)-derived hypothalamic neurons. This reporter line enables real-time visualization of POMC neuron differentiation, and selective enrichment of these populations for molecular, functional, and pharmacological studies. This line is readily available as new alternative method (NAM) platform, to support disease modeling and drug discovery in metabolic and neuroendocrine disorders within a human context.
1. Resource utility
These WA09 POMC-tdTomato human PSC reporter lines will serve as a resource for studies involving the differentiation of hPSCs into POMC expressing cell types. We demonstrate differentiation of these reporter cells into hypothalamic arcuate POMC neurons, validate reporter expression and their utility for functional characterization of these POMC neurons (see Table 1.).
Table 1.
Characterization and validation.
| Classification | Test | Result | Data |
|---|---|---|---|
|
| |||
| Morphology | Microscopy Bright-field | Normal |
Fig. 1 panel E Suppl. Fig. 1 panel A |
| Phenotype | Qualitative analysis (Immunocytochemistry) | OCT4, NANOG, SOX2 |
Fig. 1 panel E Suppl. Fig. 1 panel A |
| Quantitative analysis (RT-qPCR) | Oct4, Nanog, Sox2 gene expression | Fig. 1 panel D | |
| Genotype | Karyotype (CGH array) and resolution | 46, XX Resolution: 50–100 kb | Supplemental |
| mtDNA analysis (IF APPLICABLE) | N/A | N/A | |
| Identity | Performed | ||
| STR analysis | 24 sites tested; matched | Submitted in archive with journal. | |
| Mutation analysis (IF APPLICABLE) | Sequencing (Sanger) | Homozygous and Heterozygous |
Fig. 1 panel F Suppl. Fig. 1 panel B |
| Southern Blot OR WGS | N/A | ||
| Off-target nuclease analysis with mismatches | No Mutations found | Suppl. Fig. 1 panel C | |
| Microbiology and virology | Mycoplasma | Mycoplasma testing by luminescence. Negative | Suppl. Fig. 1 panel D |
| Differentiation potential | Directed differentiation | Ectoderm (PAX6), mesoderm (TBXT), endoderm (SOX17), hypothalamic neurons (POMC) |
Fig. 1 panel G Fig. 1 panel H |
| Donor screening (OPTIONAL) | HIV 1 + 2 Hepatitis B, Hepatitis C | N/A | N/A |
| Genotype additional info (OPTIONAL) | Blood group genotyping | N/A | N/A |
| Genotype additional info (OPTIONAL) | HLA tissue typing | N/A | N/A |
2. Resource details
The POMC gene encodes the precursor protein proopiomelanocortin, which undergoes enzymatic cleavage to generate multiple biologically active peptides, most notably adrenocorticotropic hormone (ACTH), melanocyte-stimulating hormones (MSHs), and β-endorphin. These peptides regulate diverse physiological processes, including energy homeostasis, stress and inflammatory responses, pigmentation, and mood modulation (Quarta et al., 2021). Within the hypothalamus, POMC is prominently expressed in the POMC neurons of the arcuate nucleus mediating satiety.
In this study, we generated a POMC knock-in reporter line by CRISPR/Cas9-mediated insertion of tdTomato into the endogenous POMC locus (Fig. 1A). Following nucleofection using a pCas9_CD4 (Stratigopoulos et al., 2018) and POMC-P2A-tdTomato targeting vector, cells were plated for recovery. Subsequently, cells were enriched using CD4 beads magnetic purification and plated at clonal density. Single colony picking yielded five independent clonal lines three carrying tdTomato (1G, 1B2, and 10E; Fig. 1B) and two non-edited clones (2A, and 8A; Fig. 1B). PCR using three primer sets (Table 2) was confirmed locus-specific insertion in clones 1G, 1B2 and 10E (Fig. 1C; primer set 1 and 2) and identify homozygous and heterozygous clones 1G, 1B2, and 10E, respectively (Fig. 1C; primer set 3). Clones with validated insertion were further analyzed by RT-qPCR to assess expression of pluripotency markers OCT4, SOX2, and NANOG, normalized to the parental WA09 line and compared against ectoderm-differentiated WA09 as a negative control (Fig. 1D).
Fig. 1. Generation and validation of a POMC-tdTomato knock-in reporter line.

(A) Schematic of CRISPR/Cas9-mediated knock-in strategy for insertion of a tdTomato reporter into the endogenous POMC locus. Primer sets 1–3 are positioned outside the RHA or LHA and within tdTomato where appropriate, as indicated. (B) Transfection of WA09 parental line followed by expansion, single-cell sorting and clonal expansion yielded five independent clonal lines (1G, 1B2, 2A, 8A, and 10E). (C) PCR genotyping using three primer sets confirmed locus-specific insertion and distinguished homozygous (1G, 1B2) from heterozygous (10E) knock-in clones. (D) RT-qPCR analysis of pluripotency markers OCT4, SOX2, and NANOG in validated clones, normalized to the parental WA09 line and compared against ectoderm-differentiated WA09 as a negative control. (E) Immunocytochemistry confirming OCT4, SOX2, and NANOG protein expression in homozygous (1G) clone. (F) Sanger sequencing verifying precise tdTomato reporter integration at the POMC locus. (G) Immunostaining of directly differentiated cultures of clone 1G into three germ layers showing expression of lineage-specific markers: PAX6 (ectoderm), TBXT (mesoderm), and SOX17 (endoderm). (H) Live-cell imaging (Incucyte) of 1G POMC-tdTomato clone at day 21 of hypothalamic neuronal differentiation showing robust tdTomato fluorescence. (I) Representative spontaneous action potential firing of POMC-tdTommato (W09 1G clone)-expressing hypothalamic neuron at −50 mV.
Table 2.
Reagents details.
| Antibodies used for immunocytochemistry/flow-cytometry |
||||
|---|---|---|---|---|
| Antibody | Dilution | Company Cat # | RRID | |
|
| ||||
| Pluripotency Undifferentiation Markers | Mouse anti-OCT4 | 1:100 | Santa Cruz Cat# SC5279 | AB_628051 |
| Goat anti-SOX2 | 1:100 | R&D Cat# AF2018 | AB_355110 | |
| Rabbit anti-NANOG | 1:200 | Cell Signaling Technology Cat# 4903 | AB_10559205 | |
| Differentiation Markers | Rabbit anti-PAX6 | 1:100 1:100 | Biolegend Cat# 901,302 | AB_2749901 |
| Rabbit anti-TBXT | 1:1000 | Cell Signaling Technology Cat# 81,694 | AB_2799983 | |
| Rabbit anti-SOX17 | Cell Signaling Technology Cat# 81,778 | AB_2650582 | ||
| Secondary antibodies | Donkey anti-mouse Alexa Fluor 568 | 1:1000 | Thermo Fisher Scientific Cat# A10037, A32849, A21206 | AB_11180865 |
| Donkey anti-goat Alexa Fluor 647 | AB_2762840 | |||
| Donkey anti-rabbit Alexa Fluor 488 | AB_2535792 | |||
| Primers | ||||
|
| ||||
| Target | Size of band | Forward/Reverse primer (5′–3′) | ||
|
| ||||
| Sequencing Primer set 1 | tdTomato insertion | 200 bp | GTAAAACGACGGCC | |
| AGTCGCTACGGCGGT | ||||
| TTCAT/GGAAACAGC | ||||
| TATGACCATGATGA | ||||
| ACTCTTTGATGACC | ||||
| TCCT | ||||
| Sequencing Primer set 2 | tdTomato insertion | 314 bp | GTAAAACGACGGC | |
| CAGTCACCACCTGT | ||||
| TCCTGTACG/GGAAACA | ||||
| GCTATGACCATGATATC | ||||
| CTACCGCATGGAAACC | ||||
| Sequencing Primer set 3 | tdTomato insertion | 1895 bp | GTAAAACGACGG | |
| CCAGTCCATCATCAA | ||||
| GAACGCCTACA/GG | ||||
| AAACAGCTATGACCA | ||||
| TGGTGCCTTCA | ||||
| CCCAAACTATCT | ||||
| gRNA | Targeting POMC C-term | CCTACAAGAA | ||
| GGGCGAGTGA | ||||
| Donor Template | (LHA/P2A/tdTomato/STOP/RHA) | CGACGCTTGACACG | ||
| CCCGACACTGTGCC | ||||
| CTGTGTCCTCGGCAC | ||||
| GTGGCGAGGGCGGC | ||||
| CAGGGCCTAGGCGC | ||||
| AGTGACGGGCGCGG | ||||
| CAGCCGGGCCGGGG | ||||
| TGCGGGGCACGGGC | ||||
| TGCCCTCATGCCCTC | ||||
| GCGTCTTCCCCCAGG | ||||
| AGTGCATCCGGGCCT | ||||
| GCAAGCCCGACCTCT | ||||
| CGGCCGAGACTCCCA | ||||
| TGTTCCCGGGAAATGGC | ||||
| GACGAGCAGCCTCTGAC | ||||
| CGAGAACCCCCGGAA | ||||
| GTACGTCATGGGCCA | ||||
| CTTCCGCTGGGACCG | ||||
| ATTCGGCCGCCGCAA | ||||
| CAGCAGCAGCAGCGG | ||||
| CAGCAGCGGCGCAGG | ||||
| GCAGAAGCGCGAGGA | ||||
| CGTCTCAGCGGGCGA | ||||
| AGACTGCGGCCCGCT | ||||
| GCCTGAGGGCGGCCC | ||||
| CGAGCCCCGCAGCGA | ||||
| TGGTGCCAAGCCGGG | ||||
| CCCGCGCGAGGGCAA | ||||
| GCGCTCCTACTCCATGG | ||||
| AGCACTTCCGCTGGGG | ||||
| CAAGCCGGTGGGCAAG | ||||
| AAGCGGCGCCCAGTGA | ||||
| AGGTGTACCCTAACGG | ||||
| CGCCGAGGACGAGTCG | ||||
| GCCGAGGCCTTCCCCCT | ||||
| GGAGTTCAAGAGGGA | ||||
| GCTGACTGGCCAGC | ||||
| GACTCCGGGAGGGA | ||||
| GATGGCCCCGACGG | ||||
| CCCTGCCGATGAC | ||||
| Antibodies used for immunocytochemistry/flow-cytometry |
||||
| Antibody | Dilution | Company Cat # | RRID | |
|
| ||||
| GGCGCAGGGGCCC | ||||
| AGGCCGACCTGGA | ||||
| GCACAGCCTGCTG | ||||
| GTGGCGGCCGAGA | ||||
| AGAAGGACGAGGG | ||||
| CCCCTACAGGATGG | ||||
| AGCACTTCCGCTGG | ||||
| GGCAGCCCGCCCAA | ||||
| GGACAAGCGCTACG | ||||
| GCGGTTTCATGACCT | ||||
| CCGAGAAGAGCCAG | ||||
| ACGCCCCTGGTGAC | ||||
| GCTGTTCAAAAACG | ||||
| CCATCATCAAGAAC | ||||
| GCCTACAAGAAGGG | ||||
| CGAGGGATCCGGAGC | ||||
| CACGAACTTCTCTCTG | ||||
| TTAAAGCAAGCAGGAG | ||||
| ACGTGGAAGAAAACCC | ||||
| CGGTCCTATGGTGAGC | ||||
| AAGGGCGAGGAGGTCAT | ||||
| CAAAGAGTTCATGCGCT | ||||
| TCAAGGTGCGCATGGA | ||||
| GGGCTCCATGAACGGC | ||||
| CACGAGTTCGAGATCG | ||||
| AGGGCGAGGGCGAGGG | ||||
| CCGCCCCTACGAGGGC | ||||
| ACCCAGACCGCCAAGCT | ||||
| GAAGGTGACCAAGGGCG | ||||
| GCCCCCTGCCCTTCGCC | ||||
| TGGGACATCCTGTCCC | ||||
| CCCAGTTCATGTACGG | ||||
| CTCCAAGGCGTACGTG | ||||
| AAGCACCCCGCCGACA | ||||
| TCCCCGATTACAAGAAG | ||||
| CTGTCCTTCCCCGAGGG | ||||
| CTTCAAGTGGGAGCGCG | ||||
| TGATGAACTTCGAGGAC | ||||
| GGCGGTCTGGTGACC | ||||
| GTGACCCAGGACTCC | ||||
| TCCCTGCAGGACGG | ||||
| CACGCTGATCTACA | ||||
| AGGTGAAGATGCG | ||||
| CGGCACCAACTTCC | ||||
| CCCCCGACGGCCCC | ||||
| GTAATGCAGAAGAA | ||||
| GACCATGGGCTGGG | ||||
| AGGCCTCCACCGAG | ||||
| CGCCTGTACCCCCG | ||||
| CGACGGCGTGCTGA | ||||
| AGGGCGAGATCCAC | ||||
| CAGGCCCTGAAGCTG | ||||
| AAGGACGGCGGCCAC | ||||
| TACCTGGTGGAGTTC | ||||
| AAGACCATCTACATG | ||||
| GCCAAGAAGCCCGTG | ||||
| CAACTGCCCGGCTAC | ||||
| TACTACGTGGACACC | ||||
| AAGCTGGACATCACC | ||||
| TCCCACAACGAGGAC | ||||
| TACACCATCGTGGAA | ||||
| CAGTACGAGCGCTCC | ||||
| GAGGGCCGCCACCAC | ||||
| CTGTTCCTGGGGCAT | ||||
| GGCACCGGCAGCAC | ||||
| CGGCAGCGGCAGCT | ||||
| CCGGCACCGCCTCC | ||||
| TCCGAGGACAACAA | ||||
| CATGGCCGTCATCA | ||||
| AAGAGTTCATGCGC | ||||
| TTCAAGGTGCGCAT | ||||
| GGAGGGCTCCATGAAC | ||||
| GGCCACGAGTTCGA | ||||
| GATCGAGGGCGAGG | ||||
| GCGAGGGCCGCCCC | ||||
| TACGAGGGCACCCA | ||||
| GACCGCCAAGCTGA | ||||
| AGGTGACCAAGGGC | ||||
| GGCCCCCTGCCCTT | ||||
| CGCCTGGGACATCC | ||||
| TGTCCCCCCAGTTC | ||||
| ATGTACGGCTCCA | ||||
| AGGCGTACGTGAA | ||||
| GCACCCCGCCGAC | ||||
| ATCCCCGATTACA | ||||
| AGAAGCTGTCCTT | ||||
| CCCCGAGGGCTT | ||||
| CAAGTGGGAGCG | ||||
| CGTGATGAACTT | ||||
| CGAGGACGGCG | ||||
| GTCTGGTGACCG | ||||
| TGACCCAGGAC | ||||
| TCCTCCCTGCAG | ||||
| GACGGCACGCTG | ||||
| ATCTACAAGGTGAA | ||||
| GATGCGCGGCA | ||||
| CCAACTTCCCCCC | ||||
| CGACGGCCCCGTA | ||||
| ATGCAGAAGAAGA | ||||
| CCATGGGCTGGGAGG | ||||
| CCTCCACCGAGCGCC | ||||
| TGTACCCCCGCGACG | ||||
| GCGTGCTGAAGGGCG | ||||
| AGATCCACCAGGCCC | ||||
| TGAAGCTGAAGGACG | ||||
| GCGGCCACTACCTGG | ||||
| TGGAGTTCAAGACCA | ||||
| TCTACATGGCCAAGA | ||||
| AGCCCGTGCAACTGCC | ||||
| CGGCTACTACTACGT | ||||
| GGACACCAAGCTGGA | ||||
| CATCACCTCCCACAA | ||||
| CGAGGACTACACCA | ||||
| TCGTGGAACAGTAC | ||||
| GAGCGCTCCGAGGG | ||||
| CCGCCACCACCTGTT | ||||
| CCTGTACGGCATGG | ||||
| ACGAGCTGTACAAGTGAGGGCACAGCGGGG | ||||
| CCCCAGGGCTACCC | ||||
| TCCCCCAGGAGGTC | ||||
| GACCCCAAAGCCCCT | ||||
| TGCTCTCCCCTGCCC | ||||
| TGCTGCCGCCTCCCA | ||||
| GCCTGGGGGGTCGTGG | ||||
| CAGATAATCAGCCTCTT | ||||
| AAAGCTGCCTGTAGTTA | ||||
| GGAAATAAAACCTTT | ||||
| CAAATTTCACATCC | ||||
| ACCTCTGACTTTGA | ||||
| ATGTAAACTGTGTG | ||||
| AATAAAGTAAAAAT | ||||
| ACGTAGCCGTCAA | ||||
| ATAACAGCAGCA | ||||
| TGGATCGGAGGA | ||||
| GCACAGTGGTTT | ||||
| CCATGCGGTAGG | ||||
| ATATTTCACAGG | ||||
| ACTTAGTGAGCGT | ||||
| GAAAGGAAAATGT | ||||
| GCTTCCTGCCCCCA | ||||
| CCCCCAAATGGATC | ||||
| TTCGAGGGATCAG | ||||
| ATAGTTTGGGTGAA | ||||
| GGCACAGGGTGGCT | ||||
| CCAGCACCTCTAGG | ||||
| ATGGCCGTATTTTCC | ||||
| ACACACTCCACTGAG | ||||
| TGGGAGACTGCTCAG | ||||
| CTAGCACACGTGTAA | ||||
| AGGCAGGATTCCTG | ||||
| CAAGAGTGACCCCGGG | ||||
| CGCTCAGGGGCTCC | ||||
| CCGGCTCCGGTCCA | ||||
| CCTCCAAAAGCCAG | ||||
| TTGGACAGGTTGAG | ||||
| GCCTACCCACGCCT | ||||
| GGGAGTGCTCTGGA | ||||
| CTGTCAGGTGAGAA | ||||
| GTCTTGGTAATGTCT | ||||
| CCGGGGAACTGCTCG | ||||
| TAGCAATCCATGGGA | ||||
| CCTTAGGCAAGTC | ||||
| Primers for top off-target mutagenesis predicted site sequencing (for all CRISP/Cas9, ZNF and TALENS) | ||||
|
| ||||
| Target | Size of band | Forward/Reverse primer (5′–3′) | ||
|
| ||||
| Off-target Primer Set 1 | Chr5 | 685 | TCCCAAAGTGCTG | |
| GGATTAC/GATGCT | ||||
| GAGGTTTAGGGTACAA | ||||
| Off-target Primer Set 2 | Chr4 | 274 | TGCTATGCCCGGCT | |
| AATTT/GCCGTCTTG | ||||
| GCTCTTCTTTA | ||||
| Off-target Primer Set 3 | Chr13 | 460 | CATTCTGCCTGTCTC | |
| TCATTCT/CTGTGACCCT | ||||
| GACTCTCTATTTG | ||||
| Off-target Primer Set 4 | Chr8 | 467 | CCGGAGTGAATGATGGA | |
| GATAAG/TGCACACCC | ||||
| AAGATCCTTTAG | ||||
Among these, clones 1G and 1B2 (homozygous knock-in), and heterozygous clone 10E exhibited typical pluripotent morphology and robust expression of OCT4, SOX2, and NANOG proteins, as confirmed by immunocytochemistry (Fig. 1E and Appendix A). Sanger sequencing verified accurate reporter integration (Fig. 1F and Appendix A), and clone 1G was prioritized for downstream studies due to its homozygous insertion. All reporter lines were karyotyped, and short tandem repeat (STR) profiled (GenePrint 24 System, Promega; see STR analysis), and were free of Mycoplasma contamination (Appendix A).
The pluripotent differentiation potential of the 1G POMC-tdTomato line was validated by directed differentiation into the three germ layers, with expression of lineage markers PAX6 (ectoderm), TBXT (mesoderm), and SOX17 (endoderm) (Fig. 1G). Using our established differentiation protocol (Jovanovic et al., 2024), clone 1G was further directed into hypothalamic arcuate neurons. Live imaging at day 21 of differentiation revealed strong tdTomato fluorescence (Fig. 1H) with an average of 36.57 % of cells expressing tdTomato reporter (95 % confidence interval, margin of error +/− 1.413), and by day 28, td Tomato positive neurons exhibited spontaneous action potentials as demonstrated by patch-clamp electrophysiology recording (Fig. 1I).
Together, the WA09 POMC-tdTomato knock-in reporter line provides a renewable, well-characterized resource for the differentiation, identification, and functional interrogation of POMC-expressing cell types. Knock-in of the P2A sequence at the C-terminus of POMC may alter its stability and interactions leading to haploinsufficiency and/or alterations in functional response, however, this has not been assessed in this study and may require further characterization. This tool will facilitate studies of hypothalamic development, enable disease modeling in metabolic disorders, and allow live cell tracking and selective enrichment of POMC neurons for downstream experimental applications.
3. Materials and methods
3.1. Cell culture and gene editing
Cells were single-cell dissociated with Accutase (Gibco) for 5 min, and 2 × 106 cells were mixed in nucleofection buffer (Cell Nucleofector Kit 2; Cat # VPH-5022) with 7.5 μg plasmid pGS-gRNA POMC (gRNA CCTACAAGAAGGGCGAGTGA), 2.5 Âμg plasmid Cas9_CD4, and 10 μg POMC-P2A-tdTomato targeting vector followed by nucleofection using an Amaxa Nucleofector II (Program A-023) with the Human Stem Cell Nucleofector Kit 2 according to the manufacturer’s instructions. Nucleofected cells were plated onto Geltrex (Gibco)-coated plates in mTeSR Plus (STEMCELL Technologies) with RevitaCell (Gibco). Following 2 days of recovery, CD4-expressing cells were selected using human CD4 MicroBeads (Cat # 130–045-101; MS Column, Cat # 130–042-20; MACS Miltenyi Biotec) and re-plated at clonal density in 10 cm2 culture plates. After 7–12 days, colonies were picked into 96-well plates. Clonal analysis was done by PCR for tdTomato, and positive clones were expanded for further analysis. Subsequent culture was done on vitronectin (VTN)-coated plates in Essential 8 medium (E8; Gibco) and cryopreserved using E8 medium with 10 % DMSO and CEPT4. All cells were maintained at 37 °C, 5 % CO2 and assayed at passage 32.
3.2. Directed differentiation
Ectoderm, mesoderm and endoderm were induced as previously described (Chen et al., 2021).
Cell lines were differentiated into hypothalamic arcuate neurons as previously described (Jovanovic, et al., 2024). Briefly, WA09 POMC-tdTomato cells were plated on VTN-coated plates in E8. The next day, medium was replaced with Arc-1. On day 7, cells were single cell dissociated and plated onto AggreWell plates. The cells were maintained in Arc-2 medium until day 11. On day 11, medium was replaced with Arc-3. Spheres were dissociated on day 14 and plated on Geltrex-coated plates in Arc-3 medium until day 28, when POMC-tdTomato expression was assessed.
3.3. Immunocytochemistry
POMC-tdTomato cells were fixed with 4 % paraformaldehyde and stained in Perm-block buffer (0.1 % Triton X-100 and 5 % Bovine Serum Albumin in DPBS) using primary antibodies overnight and secondary antibodies for 2 h at RT (Table 2). Nuclei were stained using Hoechst 33,342 (ThermoFisher). Images were captured using a Leica DMi8 epifluorescence microscope.
3.4. Mycoplasma detection
The MycoAlert PLUS Mycoplasma Detection Kit (Lonza) was used to verify that WA09 POMC-tdTomato cell lines were mycoplasma-free.
3.5. tdTomato knock-in validation
Genomic DNA was extracted using the DNeasy Blood & Tissue Kit (Qiagen). PCR reactions were performed using appropriate primers (Table 2). PCR products were Sanger sequenced.
3.6. Short tandem repeat (STR) and karyotype analysis
STR profiling and karyotyping were performed by Cell Line Genetics (Madison, WI).
3.7. Patch-clamp electrophysiology
POMC-tdTomato (1G clone)-expressing hypothalamic neurons were plated on 12 mm glass coverslips (Carolina Biological Supply) coated with Poly-l-Ornithine (Sigma Aldrich) and iMatrix-511 SILK (Amsbio). D28-D35 tdTomato-expressing Arc neurons were visually identified by fluorescence for patch-clamp electrophysiology recordings. Extracellular media contained BrainPhys media (STEMCELL Technologies). Intracellular solution contained (in mM): 135 K-gluconate, 5 KCl, 5 MgATP, 0.5 Na2GTP, 5 HEPES, 2 MgCl2, 5 EGTA, 0.5 CaCl2, pH 7.4. Recordings were made using an Axopatch 200B (Molecular Devices) amplifier at a sampling rate of 10 kHz and a 2 kHz Bessel low-pass filter. Data was digitized using a Digidata 1550B with pClamp11 (Molecular Devices). Whole-cell configuration was obtained in voltage clamp mode, and switched to current clamp mode after waiting 3 min for the membrane potential to stabilize. Spontaneous action potentials were recorded at a − 50 mV.
Supplementary Material
Resource Table:
| Unique stem cell line identifier | WAe009-A-3I WAe009-A-3 J WAe009-A-3 K |
| Alternative name(s) of stem cell line | WA09 POMC-tdTomato (homozygous clone 1G) WA09 POMC-tdTomato (homozygous clone 1B2) WA09 POMC-tdTomato (heterozygous clone 10E) |
| Institution |
National Center for Advancing
Translational Sciences, National Institutes of Health, Rockville, MD, USA Department of Pathology and Cell Biology, Columbia University, New York, NY, USA |
| Contact information of the reported cell line distributor | Carlos Tristan carlos.tristan@nih.gov |
| Type of cell line | ESC |
| Origin | Human embryonic stem cell line (WA09; H9) |
| Additional origin info (applicable for human ESC or iPSC) |
Age:
Sex: Female Ethnicity: Unknown |
| Cell Source | WA09 (H9) (WiCell Research Institute, Inc.) |
| Method of reprogramming | Not applicable |
| Clonality | Clonal |
| Evidence of the reprogramming transgene loss (including genomic copy if applicable) | Not applicable |
| The cell culture system used | Essential 8 medium on vitronectin |
| Type of the Genetic Modification | CRISPR Cas9 mediated insertion of tdTomato at the POMC locus. |
| Associated disease | N/A |
| Gene/locus modified in the reported transgenic line | POMC |
| Method of modification / user-customizable nucleases (UCN) used, the resource used for design optimization | CRISPR Cas9 |
| User-customizable nuclease (UCN) delivery method | Nucleofection |
| All double-stranded DNA genetic material molecules introduced into the cells | Not applicable |
| Evidence of the absence of random integration of any plasmids or DS DNA introduced into the cells. | Not applicable |
| Analysis of the nuclease-targeted allele status | Sanger sequencing of target region. |
| Homozygous allele status validation | PCR spanning the editing site, followed by Sanger sequencing. |
| Method of the off-target nuclease activity prediction and surveillance | Cas-OFFinder with 3 mismatches. PCR across four off-target sites. |
| Descriptive name of the transgene | POMC-tdTomato |
| Eukaryotic selective agent resistance cassettes (including inducible, gene/cell type-specific) | Not applicable |
| Inducible/constitutive expression system details | Not applicable |
| Date archived/stock creation date | 4/24/25 |
| Cell line repository/bank | Not applicable |
| Ethical/GMO work approvals | Not applicable |
| Addgene/public access repository recombinant DNA sources’ disclaimers (if applicable) | Not applicable |
Acknowledgments
This research was supported in part by the Intramural Research Program of the National Center for Advancing Translational Sciences (NCATS), NIH. The contribution of the NIH authors was made as part of their official duties as NIH federal employees, are in compliance with agency policy requirements, and are considered Works of the United States Government. However, the findings and conclusions presented in this paper are those of the authors and do not necessarily reflect the views of the NIH of the U.S. Department of Health and Human Services. CAD is supported by New York Obesity Research Center, P30 DK026687 and DK135938.
Appendix A. Supplementary data
Supplementary data to this article can be found online at https://doi.org/10.1016/j.scr.2026.103905.
Footnotes
Declaration of competing interest
The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.
CRediT authorship contribution statement
Vukasin M. Jovanovic: Writing – review & editing, Writing – original draft, Visualization, Validation, Supervision, Resources, Project administration, Methodology, Investigation, Funding acquisition, Formal analysis, Data curation, Conceptualization. Rick Rausch: Data curation. Maria Caterina DeRosa: Data curation. David Castellano: Data curation. Cody McKee:. Chaitali Sen: Data curation. Fiona Daly: Data curation. Claudia A. Doege: Writing – review & editing, Writing – original draft, Visualization, Validation, Supervision, Resources, Project administration, Methodology, Investigation, Funding acquisition, Formal analysis, Data curation, Conceptualization. Carlos A. Tristan:.
Data availability
Data will be made available on request.
References
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Data Availability Statement
Data will be made available on request.
