Skip to main content
Biophysical Journal logoLink to Biophysical Journal
. 1998 Jul;75(1):538–544. doi: 10.1016/S0006-3495(98)77543-5

ATP-Induced phosphorylation of the sarcoplasmic reticulum Ca2+ ATPase: molecular interpretation of infrared difference spectra.

A Barth 1, W Mäntele 1
PMCID: PMC1299728  PMID: 9649416

Abstract

Time-resolved infrared difference spectra of the ATP-induced phosphorylation of the sarcoplasmic reticulum Ca2+-ATPase have been recorded in H2O and 2H2O at pH 7.0 and 1 degrees C. The reaction was induced by ATP release from P3-1-(2-nitro)phenylethyladenosine 5'-triphosphate (caged ATP) and from [gamma-18O3]caged ATP. A band at 1546 cm-1, not observed with the deuterated enzyme, can be assigned to the amide II mode of the protein backbone and indicates that a conformational change associated with ATPase phosphorylation takes place after ATP binding. This is also indicated between 1700 and 1610 cm-1, where bandshifts of up to 10 cm-1 observed upon protein deuteration suggest that amide I modes of the protein backbone dominate the difference spectrum. From the band positions it is deduced that alpha-helical, beta-sheet, and probably beta-turn structures are affected in the phosphorylation reaction. Model spectra of acetyl phosphate, acetate, ATP, and ADP suggest the tentative assignment of some of the bands of the phosphorylation spectrum to the molecular groups of ATP and Asp351, which participate directly in the phosphate transfer reaction: a positive band at 1719 cm-1 to the C==O group of aspartyl phosphate, a negative band at 1239 cm-1 to the nuas(PO2-) modes of the bound ATP molecule, and a positive band at 1131 cm-1 to the nuas(PO32-) mode of the phosphoenzyme phosphate group, the latter assignment being supported by the band's sensitivity toward isotopic substitution in the gamma-phosphate of ATP. Band positions and shapes of these bands indicate that the alpha- and/or beta-phosphate(s) of the bound ATP molecule become partly dehydrated when ATP binds to the ATPase, that the phosphoenzyme phosphate group is unprotonated at pH 7.0, and that the C==O group of aspartyl phosphate does not interact with bulk water. The Ca2+ binding sites seem to be largely undisturbed by the phosphorylation reaction, and a functional role of the side chains of Asn, Gln, and Arg residues was not detected.

Full Text

The Full Text of this article is available as a PDF (93.2 KB).

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Andersen J. P. Dissection of the functional domains of the sarcoplasmic reticulum Ca(2+)-ATPase by site-directed mutagenesis. Biosci Rep. 1995 Oct;15(5):243–261. doi: 10.1007/BF01788358. [DOI] [PubMed] [Google Scholar]
  2. Andersen J. P., Lassen K., Møller J. V. Changes in Ca2+ affinity related to conformational transitions in the phosphorylated state of soluble monomeric Ca2+-ATPase from sarcoplasmic reticulum. J Biol Chem. 1985 Jan 10;260(1):371–380. [PubMed] [Google Scholar]
  3. Andersen J. P. Monomer-oligomer equilibrium of sarcoplasmic reticulum Ca-ATPase and the role of subunit interaction in the Ca2+ pump mechanism. Biochim Biophys Acta. 1989 Jan 18;988(1):47–72. doi: 10.1016/0304-4157(89)90003-8. [DOI] [PubMed] [Google Scholar]
  4. Arrondo J. L., Goñi F. M., Macarulla J. M. Infrared spectroscopy of phosphatidylcholines in aqueous suspension. A study of the phosphate group vibrations. Biochim Biophys Acta. 1984 Jun 6;794(1):165–168. doi: 10.1016/0005-2760(84)90310-2. [DOI] [PubMed] [Google Scholar]
  5. Arrondo J. L., Muga A., Castresana J., Goñi F. M. Quantitative studies of the structure of proteins in solution by Fourier-transform infrared spectroscopy. Prog Biophys Mol Biol. 1993;59(1):23–56. doi: 10.1016/0079-6107(93)90006-6. [DOI] [PubMed] [Google Scholar]
  6. Barth A., Kreutz W., Mäntele W. Ca2+ release from the phosphorylated and the unphosphorylated sarcoplasmic reticulum Ca2+ ATPase results in parallel structural changes. An infrared spectroscopic study. J Biol Chem. 1997 Oct 10;272(41):25507–25510. doi: 10.1074/jbc.272.41.25507. [DOI] [PubMed] [Google Scholar]
  7. Barth A., Kreutz W., Mäntele W. Changes of protein structure, nucleotide microenvironment, and Ca(2+)-binding states in the catalytic cycle of sarcoplasmic reticulum Ca(2+)-ATPase: investigation of nucleotide binding, phosphorylation and phosphoenzyme conversion by FTIR difference spectroscopy. Biochim Biophys Acta. 1994 Aug 24;1194(1):75–91. doi: 10.1016/0005-2736(94)90205-4. [DOI] [PubMed] [Google Scholar]
  8. Barth A., Kreutz W., Mäntele W. Molecular changes in the sarcoplasmic reticulum calcium ATPase during catalytic activity. A Fourier transform infrared (FTIR) study using photolysis of caged ATP to trigger the reaction cycle. FEBS Lett. 1990 Dec 17;277(1-2):147–150. doi: 10.1016/0014-5793(90)80830-c. [DOI] [PubMed] [Google Scholar]
  9. Barth A., Mäntele W., Kreutz W. Infrared spectroscopic signals arising from ligand binding and conformational changes in the catalytic cycle of sarcoplasmic reticulum calcium ATPase. Biochim Biophys Acta. 1991 Mar 1;1057(1):115–123. doi: 10.1016/s0005-2728(05)80091-x. [DOI] [PubMed] [Google Scholar]
  10. Barth A., von Germar F., Kreutz W., Mäntele W. Time-resolved infrared spectroscopy of the Ca2+-ATPase. The enzyme at work. J Biol Chem. 1996 Nov 29;271(48):30637–30646. doi: 10.1074/jbc.271.48.30637. [DOI] [PubMed] [Google Scholar]
  11. Brown E. B., Peticolas W. L. Conformational geometry and vibrational frequencies of nucleic acid chains. Biopolymers. 1975 Jun;14(6):1259–1271. doi: 10.1002/bip.1975.360140614. [DOI] [PubMed] [Google Scholar]
  12. Buchet R., Jona I., Martonosi A. Ca2+ release from caged-Ca2+ alters the FTIR spectrum of sarcoplasmic reticulum. Biochim Biophys Acta. 1991 Nov 4;1069(2):209–217. doi: 10.1016/0005-2736(91)90126-s. [DOI] [PubMed] [Google Scholar]
  13. Buchet R., Jona I., Martonosi A. The effect of dicyclohexylcarbodiimide and cyclopiazonic acid on the difference FTIR spectra of sarcoplasmic reticulum induced by photolysis of caged-ATP and caged-Ca2+. Biochim Biophys Acta. 1992 Feb 17;1104(1):207–214. doi: 10.1016/0005-2736(92)90152-c. [DOI] [PubMed] [Google Scholar]
  14. Buchet R., Varga S., Seidler N. W., Molnar E., Martonosi A. Polarized infrared attenuated total reflectance spectroscopy of the Ca(2+)-ATPase of sarcoplasmic reticulum. Biochim Biophys Acta. 1991 Sep 30;1068(2):201–216. doi: 10.1016/0005-2736(91)90211-p. [DOI] [PubMed] [Google Scholar]
  15. Byler D. M., Susi H. Examination of the secondary structure of proteins by deconvolved FTIR spectra. Biopolymers. 1986 Mar;25(3):469–487. doi: 10.1002/bip.360250307. [DOI] [PubMed] [Google Scholar]
  16. Chirgadze Y. N., Brazhnikov E. V. Intensities and other spectral parameters of infrared amide bands of polypeptides in the alpha-helical form. Biopolymers. 1974;13(9):1701–1712. doi: 10.1002/bip.1974.360130902. [DOI] [PubMed] [Google Scholar]
  17. Chirgadze Y. N., Fedorov O. V., Trushina N. P. Estimation of amino acid residue side-chain absorption in the infrared spectra of protein solutions in heavy water. Biopolymers. 1975 Apr;14(4):679–694. doi: 10.1002/bip.1975.360140402. [DOI] [PubMed] [Google Scholar]
  18. Chirgadze Y. N., Shestopalov B. V., Venyaminov S. Y. Intensities and other spectral parameters of infrared amide bands of polypeptides in the beta- and random forms. Biopolymers. 1973 Jun;12(6):1337–1351. doi: 10.1002/bip.1973.360120610. [DOI] [PubMed] [Google Scholar]
  19. Fernandez-Belda F., Kurzmack M., Inesi G. A comparative study of calcium transients by isotopic tracer, metallochromic indicator, and intrinsic fluorescence in sarcoplasmic reticulum ATPase. J Biol Chem. 1984 Aug 10;259(15):9687–9698. [PubMed] [Google Scholar]
  20. Georg H., Barth A., Kreutz W., Siebert F., Mäntele W. Structural changes of sarcoplasmic reticulum Ca(2+)-ATPase upon Ca2+ binding studied by simultaneous measurement of infrared absorbance changes and changes of intrinsic protein fluorescence. Biochim Biophys Acta. 1994 Nov 1;1188(1-2):139–150. doi: 10.1016/0005-2728(94)90032-9. [DOI] [PubMed] [Google Scholar]
  21. Goormaghtigh E., Cabiaux V., Ruysschaert J. M. Determination of soluble and membrane protein structure by Fourier transform infrared spectroscopy. III. Secondary structures. Subcell Biochem. 1994;23:405–450. doi: 10.1007/978-1-4615-1863-1_10. [DOI] [PubMed] [Google Scholar]
  22. Green N. M., Taylor W. R., Brandl C., Korczak B., MacLennan D. H. Structural and mechanistic implications of the amino acid sequence of calcium-transporting ATPases. Ciba Found Symp. 1986;122:93–114. doi: 10.1002/9780470513347.ch7. [DOI] [PubMed] [Google Scholar]
  23. Haris P. I., Chapman D. Does Fourier-transform infrared spectroscopy provide useful information on protein structures? Trends Biochem Sci. 1992 Sep;17(9):328–333. doi: 10.1016/0968-0004(92)90305-s. [DOI] [PubMed] [Google Scholar]
  24. Inesi G., Chen L., Sumbilla C., Lewis D., Kirtley M. E. Ca2+ binding and translocation by the sarcoplasmic reticulum ATPase: functional and structural considerations. Biosci Rep. 1995 Oct;15(5):327–339. doi: 10.1007/BF01788365. [DOI] [PubMed] [Google Scholar]
  25. Inesi G. Sequential mechanism of calcium binding and translocation in sarcoplasmic reticulum adenosine triphosphatase. J Biol Chem. 1987 Dec 5;262(34):16338–16342. [PubMed] [Google Scholar]
  26. Jackson M., Mantsch H. H. The use and misuse of FTIR spectroscopy in the determination of protein structure. Crit Rev Biochem Mol Biol. 1995;30(2):95–120. doi: 10.3109/10409239509085140. [DOI] [PubMed] [Google Scholar]
  27. MacLennan D. H., Brandl C. J., Korczak B., Green N. M. Calcium ATPaseS: contribution of molecular genetics to our understanding of structure and function. Soc Gen Physiol Ser. 1987;41:287–300. [PubMed] [Google Scholar]
  28. MacLennan D. H. Molecular tools to elucidate problems in excitation-contraction coupling. Biophys J. 1990 Dec;58(6):1355–1365. doi: 10.1016/S0006-3495(90)82482-6. [DOI] [PMC free article] [PubMed] [Google Scholar]
  29. McCray J. A., Trentham D. R. Properties and uses of photoreactive caged compounds. Annu Rev Biophys Biophys Chem. 1989;18:239–270. doi: 10.1146/annurev.bb.18.060189.001323. [DOI] [PubMed] [Google Scholar]
  30. Mintz E., Guillain F. Ca2+ transport by the sarcoplasmic reticulum ATPase. Biochim Biophys Acta. 1997 Jan 16;1318(1-2):52–70. doi: 10.1016/s0005-2728(96)00132-6. [DOI] [PubMed] [Google Scholar]
  31. Mintz E., Guillain F. How do Ca2+ ions pass through the sarcoplasmic reticulum membrane. Biosci Rep. 1995 Oct;15(5):377–385. doi: 10.1007/BF01788369. [DOI] [PubMed] [Google Scholar]
  32. Nakamura Y., Tonomura Y. Changes in affinity for calcium ions with the formation of two kinds of phosphoenzyme in the Ca2+,Mg2+-dependent ATPase of sarcoplasmic reticulum. J Biochem. 1982 Feb;91(2):449–461. doi: 10.1093/oxfordjournals.jbchem.a133717. [DOI] [PubMed] [Google Scholar]
  33. Pribić R., van Stokkum I. H., Chapman D., Haris P. I., Bloemendal M. Protein secondary structure from Fourier transform infrared and/or circular dichroism spectra. Anal Biochem. 1993 Nov 1;214(2):366–378. doi: 10.1006/abio.1993.1511. [DOI] [PubMed] [Google Scholar]
  34. Raussens V., Ruysschaert J. M., Goormaghtigh E. Fourier transform infrared spectroscopy study of the secondary structure of the gastric H+,K+-ATPase and of its membrane-associated proteolytic peptides. J Biol Chem. 1997 Jan 3;272(1):262–270. doi: 10.1074/jbc.272.1.262. [DOI] [PubMed] [Google Scholar]
  35. Shigekawa M., Wakabayashi S., Nakamura H. Effect of divalent cation bound to the ATPase of sarcoplasmic reticulum. Activation of phosphoenzyme hydrolysis by Mg2+. J Biol Chem. 1983 Dec 10;258(23):14157–14161. [PubMed] [Google Scholar]
  36. Susi H., Timasheff S. N., Stevens L. Infrared spectra and protein conformations in aqueous solutions. I. The amide I band in H2O and D2O solutions. J Biol Chem. 1967 Dec 10;242(23):5460–5466. [PubMed] [Google Scholar]
  37. Suzuki H., Nakamura S., Kanazawa T. Effects of divalent cations bound to the catalytic site on ATP-induced conformational changes in the sarcoplasmic reticulum Ca(2+)-ATPase: stopped-flow analysis of the fluorescence of N-acetyl-N'-(5-sulfo-1-naphthyl)ethylenediamine attached to cysteine-674. Biochemistry. 1994 Jul 12;33(27):8240–8246. doi: 10.1021/bi00193a010. [DOI] [PubMed] [Google Scholar]
  38. Troullier A., Gerwert K., Dupont Y. A time-resolved Fourier transformed infrared difference spectroscopy study of the sarcoplasmic reticulum Ca(2+)-ATPase: kinetics of the high-affinity calcium binding at low temperature. Biophys J. 1996 Dec;71(6):2970–2983. doi: 10.1016/S0006-3495(96)79537-1. [DOI] [PMC free article] [PubMed] [Google Scholar]
  39. Venyaminov SYu, Kalnin N. N. Quantitative IR spectrophotometry of peptide compounds in water (H2O) solutions. I. Spectral parameters of amino acid residue absorption bands. Biopolymers. 1990;30(13-14):1243–1257. doi: 10.1002/bip.360301309. [DOI] [PubMed] [Google Scholar]
  40. Venyaminov SYu, Kalnin N. N. Quantitative IR spectrophotometry of peptide compounds in water (H2O) solutions. II. Amide absorption bands of polypeptides and fibrous proteins in alpha-, beta-, and random coil conformations. Biopolymers. 1990;30(13-14):1259–1271. doi: 10.1002/bip.360301310. [DOI] [PubMed] [Google Scholar]
  41. Vilsen B. Structure-function relationships in the Ca(2+)-ATPase of sarcoplasmic reticulum studied by use of the substrate analogue CrATP and site-directed mutagenesis. Comparison with the Na+,K(+)-ATPase. Acta Physiol Scand Suppl. 1995;624:1–146. [PubMed] [Google Scholar]
  42. de Jongh H. H., Goormaghtigh E., Ruysschaert J. M. Amide-proton exchange of water-soluble proteins of different structural classes studied at the submolecular level by infrared spectroscopy. Biochemistry. 1997 Nov 4;36(44):13603–13610. doi: 10.1021/bi971337p. [DOI] [PubMed] [Google Scholar]
  43. de Jongh H. H., Goormaghtigh E., Ruysschaert J. M. Monitoring structural stability of trypsin inhibitor at the submolecular level by amide-proton exchange using Fourier transform infrared spectroscopy: a test case for more general application. Biochemistry. 1997 Nov 4;36(44):13593–13602. doi: 10.1021/bi971336x. [DOI] [PubMed] [Google Scholar]

Articles from Biophysical Journal are provided here courtesy of The Biophysical Society

RESOURCES