Skip to main content
Biophysical Journal logoLink to Biophysical Journal
. 1998 Aug;75(2):734–744. doi: 10.1016/S0006-3495(98)77563-0

Phospholipid component volumes: determination and application to bilayer structure calculations.

R S Armen 1, O D Uitto 1, S E Feller 1
PMCID: PMC1299748  PMID: 9675175

Abstract

We present a new method for the determination of bilayer structure based on a combination of computational studies and laboratory experiments. From molecular dynamics simulations, the volumes of submolecular fragments of saturated and unsaturated phosphatidylcholines in the liquid crystalline state have been extracted with a precision not available experimentally. Constancy of component volumes, both among different lipids and as a function of membrane position for a given lipid, have been examined. The component volumes were then incorporated into the liquid crystallographic method described by Wiener and White (1992. Biophys. J. 61:434-447, and references therein) for determining the structure of a fluid-phase dioleoylphosphatidylcholine bilayer from x-ray and neutron diffraction experiments.

Full Text

The Full Text of this article is available as a PDF (111.5 KB).

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Feller S. E., Yin D., Pastor R. W., MacKerell A. D., Jr Molecular dynamics simulation of unsaturated lipid bilayers at low hydration: parameterization and comparison with diffraction studies. Biophys J. 1997 Nov;73(5):2269–2279. doi: 10.1016/S0006-3495(97)78259-6. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. Hoover WG. Canonical dynamics: Equilibrium phase-space distributions. Phys Rev A Gen Phys. 1985 Mar;31(3):1695–1697. doi: 10.1103/physreva.31.1695. [DOI] [PubMed] [Google Scholar]
  3. Koenig B. W., Strey H. H., Gawrisch K. Membrane lateral compressibility determined by NMR and x-ray diffraction: effect of acyl chain polyunsaturation. Biophys J. 1997 Oct;73(4):1954–1966. doi: 10.1016/S0006-3495(97)78226-2. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. McIntosh T. J., Simon S. A. Area per molecule and distribution of water in fully hydrated dilauroylphosphatidylethanolamine bilayers. Biochemistry. 1986 Aug 26;25(17):4948–4952. doi: 10.1021/bi00365a034. [DOI] [PubMed] [Google Scholar]
  5. Nagle J. F. Area/lipid of bilayers from NMR. Biophys J. 1993 May;64(5):1476–1481. doi: 10.1016/S0006-3495(93)81514-5. [DOI] [PMC free article] [PubMed] [Google Scholar]
  6. Nagle J. F., Wilkinson D. A. Lecithin bilayers. Density measurement and molecular interactions. Biophys J. 1978 Aug;23(2):159–175. doi: 10.1016/S0006-3495(78)85441-1. [DOI] [PMC free article] [PubMed] [Google Scholar]
  7. Nagle J. F., Zhang R., Tristram-Nagle S., Sun W., Petrache H. I., Suter R. M. X-ray structure determination of fully hydrated L alpha phase dipalmitoylphosphatidylcholine bilayers. Biophys J. 1996 Mar;70(3):1419–1431. doi: 10.1016/S0006-3495(96)79701-1. [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. Petrache H. I., Feller S. E., Nagle J. F. Determination of component volumes of lipid bilayers from simulations. Biophys J. 1997 May;72(5):2237–2242. doi: 10.1016/S0006-3495(97)78867-2. [DOI] [PMC free article] [PubMed] [Google Scholar]
  9. Seelig A., Seelig J. The dynamic structure of fatty acyl chains in a phospholipid bilayer measured by deuterium magnetic resonance. Biochemistry. 1974 Nov 5;13(23):4839–4845. doi: 10.1021/bi00720a024. [DOI] [PubMed] [Google Scholar]
  10. Small D. M. Phase equilibria and structure of dry and hydrated egg lecithin. J Lipid Res. 1967 Nov;8(6):551–557. [PubMed] [Google Scholar]
  11. Sun W, Suter RM, Knewtson MA, Worthington CR, Tristram-Nagle S, Zhang R, Nagle JF. Order and disorder in fully hydrated unoriented bilayers of gel-phase dipalmitoylphosphatidylcholine. Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 1994 May;49(5):4665–4676. doi: 10.1103/physreve.49.4665. [DOI] [PubMed] [Google Scholar]
  12. White S. H., Jacobs R. E., King G. I. Partial specific volumes of lipid and water in mixtures of egg lecithin and water. Biophys J. 1987 Oct;52(4):663–665. doi: 10.1016/S0006-3495(87)83259-9. [DOI] [PMC free article] [PubMed] [Google Scholar]
  13. Wiener M. C., King G. I., White S. H. Structure of a fluid dioleoylphosphatidylcholine bilayer determined by joint refinement of x-ray and neutron diffraction data. I. Scaling of neutron data and the distributions of double bonds and water. Biophys J. 1991 Sep;60(3):568–576. doi: 10.1016/S0006-3495(91)82086-0. [DOI] [PMC free article] [PubMed] [Google Scholar]
  14. Wiener M. C., Tristram-Nagle S., Wilkinson D. A., Campbell L. E., Nagle J. F. Specific volumes of lipids in fully hydrated bilayer dispersions. Biochim Biophys Acta. 1988 Feb 18;938(2):135–142. doi: 10.1016/0005-2736(88)90153-8. [DOI] [PubMed] [Google Scholar]
  15. Wiener M. C., White S. H. Fluid bilayer structure determination by the combined use of x-ray and neutron diffraction. I. Fluid bilayer models and the limits of resolution. Biophys J. 1991 Jan;59(1):162–173. doi: 10.1016/S0006-3495(91)82208-1. [DOI] [PMC free article] [PubMed] [Google Scholar]
  16. Wiener M. C., White S. H. Fluid bilayer structure determination by the combined use of x-ray and neutron diffraction. II. "Composition-space" refinement method. Biophys J. 1991 Jan;59(1):174–185. doi: 10.1016/S0006-3495(91)82209-3. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Wiener M. C., White S. H. Structure of a fluid dioleoylphosphatidylcholine bilayer determined by joint refinement of x-ray and neutron diffraction data. II. Distribution and packing of terminal methyl groups. Biophys J. 1992 Feb;61(2):428–433. doi: 10.1016/S0006-3495(92)81848-9. [DOI] [PMC free article] [PubMed] [Google Scholar]
  18. Wiener M. C., White S. H. Structure of a fluid dioleoylphosphatidylcholine bilayer determined by joint refinement of x-ray and neutron diffraction data. III. Complete structure. Biophys J. 1992 Feb;61(2):434–447. doi: 10.1016/S0006-3495(92)81849-0. [DOI] [PMC free article] [PubMed] [Google Scholar]

Articles from Biophysical Journal are provided here courtesy of The Biophysical Society

RESOURCES