Abstract
Gramicidin A (gA), with four Trp residues per monomer, has an increased conductance compared to its Phe replacement analogs. When the dipole moment of the Trp13 side chain is increased by fluorination at indole position 5 (FgA), the conductance is expected to increase further. gA and FgA conductances to Na+, K+, and H+ were measured in planar diphytanoylphosphatidylcholine (DPhPC) or glycerylmonoolein (GMO) bilayers. In DPhPC bilayers, Na+ and K+ conductances increased upon fluorination, whereas in GMO they decreased. The low ratio in the monoglyceride bilayer was not reversed in GMO-ether bilayers, solvent-inflated or -deflated bilayers, or variable fatty acid chain monoglyceride bilayers. In both GMO and DPhPC bilayers, fluorination decreased conductance to H+ but increased conductance in the mixed solution, 1 M KCl at pH 2.0, where K+ dominates conduction. Eadie-Hofstee plot slopes suggest similar destabilization of K+ binding in both lipids. Channel lifetimes were not affected by fluorination in either lipid. These observations indicate that fluorination does not change the rotameric conformation of the side chain. The expected difference in the rate-limiting step for transport through channels in the two bilayers qualitatively explains all of the above trends.
Full Text
The Full Text of this article is available as a PDF (171.6 KB).
Selected References
These references are in PubMed. This may not be the complete list of references from this article.
- Akeson M., Deamer D. W. Proton conductance by the gramicidin water wire. Model for proton conductance in the F1F0 ATPases? Biophys J. 1991 Jul;60(1):101–109. doi: 10.1016/S0006-3495(91)82034-3. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Andersen O. S., Fuchs M. Potential energy barriers to ion transport within lipid bilayers. Studies with tetraphenylborate. Biophys J. 1975 Aug;15(8):795–830. doi: 10.1016/S0006-3495(75)85856-5. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Andersen O. S. Ion movement through gramicidin A channels. Interfacial polarization effects on single-channel current measurements. Biophys J. 1983 Feb;41(2):135–146. doi: 10.1016/S0006-3495(83)84415-4. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Andersen O. S., Koeppe R. E., 2nd Molecular determinants of channel function. Physiol Rev. 1992 Oct;72(4 Suppl):S89–158. doi: 10.1152/physrev.1992.72.suppl_4.S89. [DOI] [PubMed] [Google Scholar]
- BROCKMAN H. Dipole potential of lipid membranes. Chem Phys Lipids. 1994 Sep 6;73(1-2):57–79. doi: 10.1016/0009-3084(94)90174-0. [DOI] [PubMed] [Google Scholar]
- Bamberg E., Noda K., Gross E., Läuger P. Single-channel parameters of gramicidin A,B, and C. Biochim Biophys Acta. 1976 Jan 21;419(2):223–228. doi: 10.1016/0005-2736(76)90348-5. [DOI] [PubMed] [Google Scholar]
- Becker M. D., Greathouse D. V., Koeppe R. E., 2nd, Andersen O. S. Amino acid sequence modulation of gramicidin channel function: effects of tryptophan-to-phenylalanine substitutions on the single-channel conductance and duration. Biochemistry. 1991 Sep 10;30(36):8830–8839. doi: 10.1021/bi00100a015. [DOI] [PubMed] [Google Scholar]
- Benamar D., Daumas P., Trudelle Y., Calas B., Bennes R., Heitz F. Influence of the nature of the aromatic side-chain on the conductance of the channel of linear gramicidin: study of a series of 9,11,13,15-Tyr(O-protected) derivatives. Eur Biophys J. 1993;22(2):145–150. doi: 10.1007/BF00196918. [DOI] [PubMed] [Google Scholar]
- Busath D. D. The use of physical methods in determining gramicidin channel structure and function. Annu Rev Physiol. 1993;55:473–501. doi: 10.1146/annurev.ph.55.030193.002353. [DOI] [PubMed] [Google Scholar]
- Busath D., Szabo G. Gramicidin forms multi-state rectifying channels. Nature. 1981 Nov 26;294(5839):371–373. doi: 10.1038/294371a0. [DOI] [PubMed] [Google Scholar]
- Busath D., Szabo G. Low conductance gramicidin A channels are head-to-head dimers of beta 6.3-helices. Biophys J. 1988 May;53(5):689–695. doi: 10.1016/S0006-3495(88)83150-3. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Cseh R., Benz R. The adsorption of phloretin to lipid monolayers and bilayers cannot be explained by langmuir adsorption isotherms alone. Biophys J. 1998 Mar;74(3):1399–1408. doi: 10.1016/S0006-3495(98)77852-X. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Daumas P., Benamar D., Heitz F., Ranjalahy-Rasoloarijao L., Mouden R., Lazaro R., Pullman A. How can the aromatic side-chains modulate the conductance of the gramicidin channel? A new approach using non-coded amino acids. Int J Pept Protein Res. 1991 Sep;38(3):218–228. doi: 10.1111/j.1399-3011.1991.tb01432.x. [DOI] [PubMed] [Google Scholar]
- Daumas P., Heitz F., Ranjalahy-Rasoloarijao L., Lazaro R. Gramicidin A analogs: influence of the substitution of the tryptophans by naphthylalanines. Biochimie. 1989 Jan;71(1):77–81. doi: 10.1016/0300-9084(89)90135-1. [DOI] [PubMed] [Google Scholar]
- Dilger J. P. The thickness of monoolein lipid bilayers as determined from reflectance measurements. Biochim Biophys Acta. 1981 Jul 20;645(2):357–363. doi: 10.1016/0005-2736(81)90208-x. [DOI] [PubMed] [Google Scholar]
- Doyle D. A., Morais Cabral J., Pfuetzner R. A., Kuo A., Gulbis J. M., Cohen S. L., Chait B. T., MacKinnon R. The structure of the potassium channel: molecular basis of K+ conduction and selectivity. Science. 1998 Apr 3;280(5360):69–77. doi: 10.1126/science.280.5360.69. [DOI] [PubMed] [Google Scholar]
- Eisenman G., Sandblom J., Neher E. Interactions in cation permeation through the gramicidin channel. Cs, Rb, K, Na, Li, Tl, H, and effects of anion binding. Biophys J. 1978 May;22(2):307–340. doi: 10.1016/S0006-3495(78)85491-5. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Fields C. G., Fields G. B., Noble R. L., Cross T. A. Solid phase peptide synthesis of 15N-gramicidins A, B, and C and high performance liquid chromatographic purification. Int J Pept Protein Res. 1989 Apr;33(4):298–303. doi: 10.1111/j.1399-3011.1989.tb01285.x. [DOI] [PubMed] [Google Scholar]
- Fields G. B., Fields C. G., Petefish J., Van Wart H. E., Cross T. A. Solid-phase peptide synthesis and solid-state NMR spectroscopy of [Ala3-15N][Val1]gramicidin A. Proc Natl Acad Sci U S A. 1988 Mar;85(5):1384–1388. doi: 10.1073/pnas.85.5.1384. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Flewelling R. F., Hubbell W. L. The membrane dipole potential in a total membrane potential model. Applications to hydrophobic ion interactions with membranes. Biophys J. 1986 Feb;49(2):541–552. doi: 10.1016/S0006-3495(86)83664-5. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Fonseca V., Daumas P., Ranjalahy-Rasoloarijao L., Heitz F., Lazaro R., Trudelle Y., Andersen O. S. Gramicidin channels that have no tryptophan residues. Biochemistry. 1992 Jun 16;31(23):5340–5350. doi: 10.1021/bi00138a014. [DOI] [PubMed] [Google Scholar]
- Gawrisch K., Ruston D., Zimmerberg J., Parsegian V. A., Rand R. P., Fuller N. Membrane dipole potentials, hydration forces, and the ordering of water at membrane surfaces. Biophys J. 1992 May;61(5):1213–1223. doi: 10.1016/S0006-3495(92)81931-8. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Haydon D. A., Myers V. B. Surface charge, surface dipoles and membrane conductance. Biochim Biophys Acta. 1973 May 25;307(3):429–443. doi: 10.1016/0005-2736(73)90289-7. [DOI] [PubMed] [Google Scholar]
- Heinemann S. H., Sigworth F. J. Estimation of Na+ dwell time in the gramicidin A channel. Na+ ions as blockers of H+ currents. Biochim Biophys Acta. 1989 Dec 11;987(1):8–14. doi: 10.1016/0005-2736(89)90448-3. [DOI] [PubMed] [Google Scholar]
- Heitz F., Gavach C., Spach G., Trudelle Y. Analysis of the ion transfer through the channel of 9,11,13,15-phenylalanylgramicidin A. Biophys Chem. 1986 Jul;24(2):143–148. doi: 10.1016/0301-4622(86)80007-2. [DOI] [PubMed] [Google Scholar]
- Heitz F., Spach G., Trudelle Y. Single channels of 9, 11, 13, 15-destryptophyl-phenylalanyl-gramicidin A. Biophys J. 1982 Oct;40(1):87–89. doi: 10.1016/S0006-3495(82)84462-7. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Heitz F., Van Mau N., Bennes R., Daumas P., Trudelle Y. Single channels and surface potential of linear gramicidins. Biochimie. 1989 Jan;71(1):83–88. doi: 10.1016/0300-9084(89)90136-3. [DOI] [PubMed] [Google Scholar]
- Hille B., Schwarz W. Potassium channels as multi-ion single-file pores. J Gen Physiol. 1978 Oct;72(4):409–442. doi: 10.1085/jgp.72.4.409. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Hladky S. B., Haydon D. A. Ion transfer across lipid membranes in the presence of gramicidin A. I. Studies of the unit conductance channel. Biochim Biophys Acta. 1972 Aug 9;274(2):294–312. doi: 10.1016/0005-2736(72)90178-2. [DOI] [PubMed] [Google Scholar]
- Hu W., Cross T. A. Tryptophan hydrogen bonding and electric dipole moments: functional roles in the gramicidin channel and implications for membrane proteins. Biochemistry. 1995 Oct 31;34(43):14147–14155. doi: 10.1021/bi00043a020. [DOI] [PubMed] [Google Scholar]
- Hu W., Lazo N. D., Cross T. A. Tryptophan dynamics and structural refinement in a lipid bilayer environment: solid state NMR of the gramicidin channel. Biochemistry. 1995 Oct 31;34(43):14138–14146. doi: 10.1021/bi00043a019. [DOI] [PubMed] [Google Scholar]
- Hu W., Lee K. C., Cross T. A. Tryptophans in membrane proteins: indole ring orientations and functional implications in the gramicidin channel. Biochemistry. 1993 Jul 13;32(27):7035–7047. doi: 10.1021/bi00078a032. [DOI] [PubMed] [Google Scholar]
- Jordan P. C. Electrostatic modeling of ion pores. II. Effects attributable to the membrane dipole potential. Biophys J. 1983 Feb;41(2):189–195. doi: 10.1016/S0006-3495(83)84419-1. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Ketchem R., Roux B., Cross T. High-resolution polypeptide structure in a lamellar phase lipid environment from solid state NMR derived orientational constraints. Structure. 1997 Dec 15;5(12):1655–1669. doi: 10.1016/s0969-2126(97)00312-2. [DOI] [PubMed] [Google Scholar]
- Killian J. A., Burger K. N., de Kruijff B. Phase separation and hexagonal HII phase formation by gramicidins A, B and C in dioleoylphosphatidylcholine model membranes. A study on the role of the tryptophan residues. Biochim Biophys Acta. 1987 Feb 26;897(2):269–284. doi: 10.1016/0005-2736(87)90423-8. [DOI] [PubMed] [Google Scholar]
- Koeppe R. E., 2nd, Killian J. A., Greathouse D. V. Orientations of the tryptophan 9 and 11 side chains of the gramicidin channel based on deuterium nuclear magnetic resonance spectroscopy. Biophys J. 1994 Jan;66(1):14–24. doi: 10.1016/S0006-3495(94)80748-9. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Koeppe R. E., 2nd, Mazet J. L., Andersen O. S. Distinction between dipolar and inductive effects in modulating the conductance of gramicidin channels. Biochemistry. 1990 Jan 16;29(2):512–520. doi: 10.1021/bi00454a027. [DOI] [PubMed] [Google Scholar]
- Lazo N. D., Downing D. T. Amyloid fibrils may be assembled from beta-helical protofibrils. Biochemistry. 1998 Feb 17;37(7):1731–1735. doi: 10.1021/bi971016d. [DOI] [PubMed] [Google Scholar]
- Martínez G., Sancho M. Electrostatic interactions in gramicidin channels. Three-dielectric model. Eur Biophys J. 1993;22(4):301–307. doi: 10.1007/BF00180264. [DOI] [PubMed] [Google Scholar]
- McGill P., Schumaker M. F. Boundary conditions for- single-ion diffusion. Biophys J. 1996 Oct;71(4):1723–1742. doi: 10.1016/S0006-3495(96)79374-8. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Nielsen C., Goulian M., Andersen O. S. Energetics of inclusion-induced bilayer deformations. Biophys J. 1998 Apr;74(4):1966–1983. doi: 10.1016/S0006-3495(98)77904-4. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Roeske R. W., Hrinyo-Pavlina T. P., Pottorf R. S., Bridal T., Jin X. Z., Busath D. Synthesis and channel properties of [Tau 16]gramicidin A. Biochim Biophys Acta. 1989 Jul 10;982(2):223–227. doi: 10.1016/0005-2736(89)90058-8. [DOI] [PubMed] [Google Scholar]
- Russell E. W., Weiss L. B., Navetta F. I., Koeppe R. E., 2nd, Andersen O. S. Single-channel studies on linear gramicidins with altered amino acid side chains. Effects of altering the polarity of the side chain at position 1 in gramicidin A. Biophys J. 1986 Mar;49(3):673–686. doi: 10.1016/S0006-3495(86)83694-3. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Sancho M., Martínez G. Electrostatic modeling of dipole-ion interactions in gramicidinlike channels. Biophys J. 1991 Jul;60(1):81–88. doi: 10.1016/S0006-3495(91)82032-X. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Seoh S. A., Busath D. Gramicidin tryptophans mediate formamidinium-induced channel stabilization. Biophys J. 1995 Jun;68(6):2271–2279. doi: 10.1016/S0006-3495(95)80409-1. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Simon S. A., McIntosh T. J. Magnitude of the solvation pressure depends on dipole potential. Proc Natl Acad Sci U S A. 1989 Dec;86(23):9263–9267. doi: 10.1073/pnas.86.23.9263. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Takeuchi H., Nemoto Y., Harada I. Environments and conformations of tryptophan side chains of gramicidin A in phospholipid bilayers studied by Raman spectroscopy. Biochemistry. 1990 Feb 13;29(6):1572–1579. doi: 10.1021/bi00458a031. [DOI] [PubMed] [Google Scholar]
- Urban B. W., Hladky S. B., Haydon D. A. Ion movements in gramicidin pores. An example of single-file transport. Biochim Biophys Acta. 1980 Nov 4;602(2):331–354. doi: 10.1016/0005-2736(80)90316-8. [DOI] [PubMed] [Google Scholar]
- Urban B. W., Hladky S. B., Haydon D. A. The kinetics of ion movements in the gramicidin channel. Fed Proc. 1978 Oct;37(12):2628–2632. [PubMed] [Google Scholar]
- Waldbillig R. C., Szabo G. Planar bilayer membranes from pure lipids. Biochim Biophys Acta. 1979 Nov 2;557(2):295–305. doi: 10.1016/0005-2736(79)90328-6. [DOI] [PubMed] [Google Scholar]
- Woolf T. B., Roux B. The binding site of sodium in the gramicidin A channel: comparison of molecular dynamics with solid-state NMR data. Biophys J. 1997 May;72(5):1930–1945. doi: 10.1016/S0006-3495(97)78839-8. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Woolley G. A., Wallace B. A. Model ion channels: gramicidin and alamethicin. J Membr Biol. 1992 Aug;129(2):109–136. doi: 10.1007/BF00219508. [DOI] [PubMed] [Google Scholar]
- Yoder M. D., Lietzke S. E., Jurnak F. Unusual structural features in the parallel beta-helix in pectate lyases. Structure. 1993 Dec 15;1(4):241–251. doi: 10.1016/0969-2126(93)90013-7. [DOI] [PubMed] [Google Scholar]
- de Planque M. R., Greathouse D. V., Koeppe R. E., 2nd, Schäfer H., Marsh D., Killian J. A. Influence of lipid/peptide hydrophobic mismatch on the thickness of diacylphosphatidylcholine bilayers. A 2H NMR and ESR study using designed transmembrane alpha-helical peptides and gramicidin A. Biochemistry. 1998 Jun 30;37(26):9333–9345. doi: 10.1021/bi980233r. [DOI] [PubMed] [Google Scholar]