Skip to main content
Biophysical Journal logoLink to Biophysical Journal
. 2000 Mar;78(3):1349–1358. doi: 10.1016/S0006-3495(00)76689-6

Amino acid residues 4425-4621 localized on the three-dimensional structure of the skeletal muscle ryanodine receptor.

B L Benacquista 1, M R Sharma 1, M Samsó 1, F Zorzato 1, S Treves 1, T Wagenknecht 1
PMCID: PMC1300734  PMID: 10692321

Abstract

We have localized a region contained within the sequence of amino acid residues 4425-4621 on the three-dimensional structure of the skeletal muscle ryanodine receptor (RyR). Mouse monoclonal antibodies raised against a peptide comprising these residues have been complexed with ryanodine receptors and imaged in the frozen-hydrated state by cryoelectron microscopy. These images, along with images of antibody-free ryanodine receptor, were used to compute two-dimensional averaged images and three-dimensional reconstructions. Two-dimensional averages of immunocomplexes in which the ryanodine receptor was in the fourfold symmetrical orientation disclosed four symmetrical regions of density located on the edges of the receptor's cytoplasmic assembly that were absent from control averages of receptor without added antibody. Three-dimensional reconstructions revealed the antibody-binding sites to be on the so-called handle domains of the ryanodine receptor's cytoplasmic assembly, near their junction with the transmembrane assembly. This study is the first to demonstrate epitope mapping on the three-dimensional structure of the ryanodine receptor.

Full Text

The Full Text of this article is available as a PDF (843.3 KB).

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Brandt N. R., Caswell A. H., Brandt T., Brew K., Mellgren R. L. Mapping of the calpain proteolysis products of the junctional foot protein of the skeletal muscle triad junction. J Membr Biol. 1992 Apr;127(1):35–47. doi: 10.1007/BF00232756. [DOI] [PubMed] [Google Scholar]
  2. Böttcher B., Wynne S. A., Crowther R. A. Determination of the fold of the core protein of hepatitis B virus by electron cryomicroscopy. Nature. 1997 Mar 6;386(6620):88–91. doi: 10.1038/386088a0. [DOI] [PubMed] [Google Scholar]
  3. Chen S. R., MacLennan D. H. Identification of calmodulin-, Ca(2+)-, and ruthenium red-binding domains in the Ca2+ release channel (ryanodine receptor) of rabbit skeletal muscle sarcoplasmic reticulum. J Biol Chem. 1994 Sep 9;269(36):22698–22704. [PubMed] [Google Scholar]
  4. Chen S. R., Zhang L., MacLennan D. H. Antibodies as probes for Ca2+ activation sites in the Ca2+ release channel (ryanodine receptor) of rabbit skeletal muscle sarcoplasmic reticulum. J Biol Chem. 1993 Jun 25;268(18):13414–13421. [PubMed] [Google Scholar]
  5. Chen S. R., Zhang L., MacLennan D. H. Characterization of a Ca2+ binding and regulatory site in the Ca2+ release channel (ryanodine receptor) of rabbit skeletal muscle sarcoplasmic reticulum. J Biol Chem. 1992 Nov 15;267(32):23318–23326. [PubMed] [Google Scholar]
  6. Coronado R., Morrissette J., Sukhareva M., Vaughan D. M. Structure and function of ryanodine receptors. Am J Physiol. 1994 Jun;266(6 Pt 1):C1485–C1504. doi: 10.1152/ajpcell.1994.266.6.C1485. [DOI] [PubMed] [Google Scholar]
  7. Fill M., Mejia-Alvarez R., Zorzato F., Volpe P., Stefani E. Antibodies as probes for ligand gating of single sarcoplasmic reticulum Ca2(+)-release channels. Biochem J. 1991 Jan 15;273(Pt 2):449–457. doi: 10.1042/bj2730449. [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. Fleischer S., Inui M. Biochemistry and biophysics of excitation-contraction coupling. Annu Rev Biophys Biophys Chem. 1989;18:333–364. doi: 10.1146/annurev.bb.18.060189.002001. [DOI] [PubMed] [Google Scholar]
  9. Franzini-Armstrong C., Protasi F. Ryanodine receptors of striated muscles: a complex channel capable of multiple interactions. Physiol Rev. 1997 Jul;77(3):699–729. doi: 10.1152/physrev.1997.77.3.699. [DOI] [PubMed] [Google Scholar]
  10. Grunwald R., Meissner G. Lumenal sites and C terminus accessibility of the skeletal muscle calcium release channel (ryanodine receptor). J Biol Chem. 1995 May 12;270(19):11338–11347. doi: 10.1074/jbc.270.19.11338. [DOI] [PubMed] [Google Scholar]
  11. Guerrini R., Menegazzi P., Anacardio R., Marastoni M., Tomatis R., Zorzato F., Treves S. Calmodulin binding sites of the skeletal, cardiac, and brain ryanodine receptor Ca2+ channels: modulation by the catalytic subunit of cAMP-dependent protein kinase? Biochemistry. 1995 Apr 18;34(15):5120–5129. doi: 10.1021/bi00015a024. [DOI] [PubMed] [Google Scholar]
  12. Inui M., Saito A., Fleischer S. Purification of the ryanodine receptor and identity with feet structures of junctional terminal cisternae of sarcoplasmic reticulum from fast skeletal muscle. J Biol Chem. 1987 Feb 5;262(4):1740–1747. [PubMed] [Google Scholar]
  13. Jayaraman T., Brillantes A. M., Timerman A. P., Fleischer S., Erdjument-Bromage H., Tempst P., Marks A. R. FK506 binding protein associated with the calcium release channel (ryanodine receptor). J Biol Chem. 1992 May 15;267(14):9474–9477. [PubMed] [Google Scholar]
  14. Lai F. A., Erickson H. P., Rousseau E., Liu Q. Y., Meissner G. Purification and reconstitution of the calcium release channel from skeletal muscle. Nature. 1988 Jan 28;331(6154):315–319. doi: 10.1038/331315a0. [DOI] [PubMed] [Google Scholar]
  15. Larini F., Menegazzi P., Baricordi O., Zorzato F., Treves S. A ryanodine receptor-like Ca2+ channel is expressed in nonexcitable cells. Mol Pharmacol. 1995 Jan;47(1):21–28. [PubMed] [Google Scholar]
  16. Liu Q. Y., Lai F. A., Rousseau E., Jones R. V., Meissner G. Multiple conductance states of the purified calcium release channel complex from skeletal sarcoplasmic reticulum. Biophys J. 1989 Mar;55(3):415–424. doi: 10.1016/S0006-3495(89)82835-8. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Marks A. R., Fleischer S., Tempst P. Surface topography analysis of the ryanodine receptor/junctional channel complex based on proteolysis sensitivity mapping. J Biol Chem. 1990 Aug 5;265(22):13143–13149. [PubMed] [Google Scholar]
  18. Meissner G. Ryanodine receptor/Ca2+ release channels and their regulation by endogenous effectors. Annu Rev Physiol. 1994;56:485–508. doi: 10.1146/annurev.ph.56.030194.002413. [DOI] [PubMed] [Google Scholar]
  19. Menegazzi P., Larini F., Treves S., Guerrini R., Quadroni M., Zorzato F. Identification and characterization of three calmodulin binding sites of the skeletal muscle ryanodine receptor. Biochemistry. 1994 Aug 9;33(31):9078–9084. doi: 10.1021/bi00197a008. [DOI] [PubMed] [Google Scholar]
  20. Moore C. P., Rodney G., Zhang J. Z., Santacruz-Toloza L., Strasburg G., Hamilton S. L. Apocalmodulin and Ca2+ calmodulin bind to the same region on the skeletal muscle Ca2+ release channel. Biochemistry. 1999 Jun 29;38(26):8532–8537. doi: 10.1021/bi9907431. [DOI] [PubMed] [Google Scholar]
  21. Ogawa Y. Role of ryanodine receptors. Crit Rev Biochem Mol Biol. 1994;29(4):229–274. doi: 10.3109/10409239409083482. [DOI] [PubMed] [Google Scholar]
  22. Orlova E. V., Serysheva I. I., van Heel M., Hamilton S. L., Chiu W. Two structural configurations of the skeletal muscle calcium release channel. Nat Struct Biol. 1996 Jun;3(6):547–552. doi: 10.1038/nsb0696-547. [DOI] [PubMed] [Google Scholar]
  23. Penczek P. A., Grassucci R. A., Frank J. The ribosome at improved resolution: new techniques for merging and orientation refinement in 3D cryo-electron microscopy of biological particles. Ultramicroscopy. 1994 Mar;53(3):251–270. doi: 10.1016/0304-3991(94)90038-8. [DOI] [PubMed] [Google Scholar]
  24. Radermacher M., Rao V., Grassucci R., Frank J., Timerman A. P., Fleischer S., Wagenknecht T. Cryo-electron microscopy and three-dimensional reconstruction of the calcium release channel/ryanodine receptor from skeletal muscle. J Cell Biol. 1994 Oct;127(2):411–423. doi: 10.1083/jcb.127.2.411. [DOI] [PMC free article] [PubMed] [Google Scholar]
  25. Radermacher M., Wagenknecht T., Grassucci R., Frank J., Inui M., Chadwick C., Fleischer S. Cryo-EM of the native structure of the calcium release channel/ryanodine receptor from sarcoplasmic reticulum. Biophys J. 1992 Apr;61(4):936–940. doi: 10.1016/S0006-3495(92)81900-8. [DOI] [PMC free article] [PubMed] [Google Scholar]
  26. Samsó M., Trujillo R., Gurrola G. B., Valdivia H. H., Wagenknecht T. Three-dimensional location of the imperatoxin A binding site on the ryanodine receptor. J Cell Biol. 1999 Jul 26;146(2):493–499. doi: 10.1083/jcb.146.2.493. [DOI] [PMC free article] [PubMed] [Google Scholar]
  27. Samsó M., Wagenknecht T. Contributions of electron microscopy and single-particle techniques to the determination of the ryanodine receptor three-dimensional structure. J Struct Biol. 1998;121(2):172–180. doi: 10.1006/jsbi.1997.3955. [DOI] [PubMed] [Google Scholar]
  28. Serysheva I. I., Orlova E. V., Chiu W., Sherman M. B., Hamilton S. L., van Heel M. Electron cryomicroscopy and angular reconstitution used to visualize the skeletal muscle calcium release channel. Nat Struct Biol. 1995 Jan;2(1):18–24. doi: 10.1038/nsb0195-18. [DOI] [PubMed] [Google Scholar]
  29. Sharma M. R., Penczek P., Grassucci R., Xin H. B., Fleischer S., Wagenknecht T. Cryoelectron microscopy and image analysis of the cardiac ryanodine receptor. J Biol Chem. 1998 Jul 17;273(29):18429–18434. doi: 10.1074/jbc.273.29.18429. [DOI] [PubMed] [Google Scholar]
  30. Shoshan-Barmatz V., Ashley R. H. The structure, function, and cellular regulation of ryanodine-sensitive Ca2+ release channels. Int Rev Cytol. 1998;183:185–270. doi: 10.1016/s0074-7696(08)60145-x. [DOI] [PubMed] [Google Scholar]
  31. Shoshan-Barmatz V., Zarka A. A simple, fast, one-step method for the purification of the skeletal-muscle ryanodine receptor. Biochem J. 1992 Jul 1;285(Pt 1):61–64. doi: 10.1042/bj2850061. [DOI] [PMC free article] [PubMed] [Google Scholar]
  32. Smith J. S., Imagawa T., Ma J., Fill M., Campbell K. P., Coronado R. Purified ryanodine receptor from rabbit skeletal muscle is the calcium-release channel of sarcoplasmic reticulum. J Gen Physiol. 1988 Jul;92(1):1–26. doi: 10.1085/jgp.92.1.1. [DOI] [PMC free article] [PubMed] [Google Scholar]
  33. Sorrentino V., Volpe P. Ryanodine receptors: how many, where and why? Trends Pharmacol Sci. 1993 Mar;14(3):98–103. doi: 10.1016/0165-6147(93)90072-r. [DOI] [PubMed] [Google Scholar]
  34. Takeshima H., Nishimura S., Matsumoto T., Ishida H., Kangawa K., Minamino N., Matsuo H., Ueda M., Hanaoka M., Hirose T. Primary structure and expression from complementary DNA of skeletal muscle ryanodine receptor. Nature. 1989 Jun 8;339(6224):439–445. doi: 10.1038/339439a0. [DOI] [PubMed] [Google Scholar]
  35. Timerman A. P., Ogunbumni E., Freund E., Wiederrecht G., Marks A. R., Fleischer S. The calcium release channel of sarcoplasmic reticulum is modulated by FK-506-binding protein. Dissociation and reconstitution of FKBP-12 to the calcium release channel of skeletal muscle sarcoplasmic reticulum. J Biol Chem. 1993 Nov 5;268(31):22992–22999. [PubMed] [Google Scholar]
  36. Treves S., Chiozzi P., Zorzato F. Identification of the domain recognized by anti-(ryanodine receptor) antibodies which affect Ca(2+)-induced Ca2+ release. Biochem J. 1993 May 1;291(Pt 3):757–763. doi: 10.1042/bj2910757. [DOI] [PMC free article] [PubMed] [Google Scholar]
  37. Tripathy A., Xu L., Mann G., Meissner G. Calmodulin activation and inhibition of skeletal muscle Ca2+ release channel (ryanodine receptor). Biophys J. 1995 Jul;69(1):106–119. doi: 10.1016/S0006-3495(95)79880-0. [DOI] [PMC free article] [PubMed] [Google Scholar]
  38. Wagenknecht T., Berkowitz J., Grassucci R., Timerman A. P., Fleischer S. Localization of calmodulin binding sites on the ryanodine receptor from skeletal muscle by electron microscopy. Biophys J. 1994 Dec;67(6):2286–2295. doi: 10.1016/S0006-3495(94)80714-3. [DOI] [PMC free article] [PubMed] [Google Scholar]
  39. Wagenknecht T., Grassucci R., Frank J., Saito A., Inui M., Fleischer S. Three-dimensional architecture of the calcium channel/foot structure of sarcoplasmic reticulum. Nature. 1989 Mar 9;338(6211):167–170. doi: 10.1038/338167a0. [DOI] [PubMed] [Google Scholar]
  40. Wagenknecht T., Radermacher M., Grassucci R., Berkowitz J., Xin H. B., Fleischer S. Locations of calmodulin and FK506-binding protein on the three-dimensional architecture of the skeletal muscle ryanodine receptor. J Biol Chem. 1997 Dec 19;272(51):32463–32471. doi: 10.1074/jbc.272.51.32463. [DOI] [PubMed] [Google Scholar]
  41. Wagenknecht T., Radermacher M. Ryanodine receptors: structure and macromolecular interactions. Curr Opin Struct Biol. 1997 Apr;7(2):258–265. doi: 10.1016/s0959-440x(97)80034-6. [DOI] [PubMed] [Google Scholar]
  42. Wagenknecht T., Radermacher M. Three-dimensional architecture of the skeletal muscle ryanodine receptor. FEBS Lett. 1995 Aug 1;369(1):43–46. doi: 10.1016/0014-5793(95)00581-s. [DOI] [PubMed] [Google Scholar]
  43. Yang H. C., Reedy M. M., Burke C. L., Strasburg G. M. Calmodulin interaction with the skeletal muscle sarcoplasmic reticulum calcium channel protein. Biochemistry. 1994 Jan 18;33(2):518–525. doi: 10.1021/bi00168a017. [DOI] [PubMed] [Google Scholar]
  44. Yu X., Shibata T., Egelman E. H. Identification of a defined epitope on the surface of the active RecA-DNA filament using a monoclonal antibody and three-dimensional reconstruction. J Mol Biol. 1998 Nov 13;283(5):985–992. doi: 10.1006/jmbi.1998.2141. [DOI] [PubMed] [Google Scholar]
  45. Zorzato F., Chu A., Volpe P. Antibodies to junctional sarcoplasmic reticulum proteins: probes for the Ca2+-release channel. Biochem J. 1989 Aug 1;261(3):863–870. doi: 10.1042/bj2610863. [DOI] [PMC free article] [PubMed] [Google Scholar]
  46. Zorzato F., Fujii J., Otsu K., Phillips M., Green N. M., Lai F. A., Meissner G., MacLennan D. H. Molecular cloning of cDNA encoding human and rabbit forms of the Ca2+ release channel (ryanodine receptor) of skeletal muscle sarcoplasmic reticulum. J Biol Chem. 1990 Feb 5;265(4):2244–2256. [PubMed] [Google Scholar]
  47. Zorzato F., Menegazzi P., Treves S., Ronjat M. Role of malignant hyperthermia domain in the regulation of Ca2+ release channel (ryanodine receptor) of skeletal muscle sarcoplasmic reticulum. J Biol Chem. 1996 Sep 13;271(37):22759–22763. doi: 10.1074/jbc.271.37.22759. [DOI] [PubMed] [Google Scholar]

Articles from Biophysical Journal are provided here courtesy of The Biophysical Society

RESOURCES