Abstract
We performed spectral diffusion experiments in trehalose-enriched glycerol/buffer-glass on horseradish peroxidase where the heme was replaced by metal-free mesoporphyrin IX, and compared them with the respective behavior in a pure glycerol/buffer-glass (Schlichter et al., J. Chem. Phys. 2000, 112:3045-3050). Trehalose has a significant influence: spectral diffusion broadening speeds up compared to the trehalose-free glass. This speeding up is attributed to a shortening of the correlation time of the frequency fluctuations most probably by preventing water molecules from leaving the protein interior. Superimposed to the frequency fluctuation dynamics is a relaxation dynamics that manifests itself as an aging process in the spectral diffusion broadening. Although the trehalose environment speeds up the fluctuations, it does not have any influence on the relaxation. Both relaxation and fluctuations are governed by power laws in time. The respective exponents do not seem to change with the protein environment. From the spectral dynamics, the mean square displacement in conformation space can be determined. It is governed by anomalous diffusion. The associated frequency correlation time is incredibly long, demonstrating that proteins at low temperatures are truly nonergodic systems.
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- Agmon N. Reactive line-shape narrowing in low-temperature inhomogeneous geminate recombination of CO to myoglobin. Biochemistry. 1988 May 3;27(9):3507–3511. doi: 10.1021/bi00409a057. [DOI] [PubMed] [Google Scholar]
- Ansari A., Berendzen J., Bowne S. F., Frauenfelder H., Iben I. E., Sauke T. B., Shyamsunder E., Young R. D. Protein states and proteinquakes. Proc Natl Acad Sci U S A. 1985 Aug;82(15):5000–5004. doi: 10.1073/pnas.82.15.5000. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Campbell B. F., Chance M. R., Friedman J. M. Linkage of functional and structural heterogeneity in proteins: dynamic hole burning in carboxymyoglobin. Science. 1987 Oct 16;238(4825):373–376. doi: 10.1126/science.3659921. [DOI] [PubMed] [Google Scholar]
- Crowe J. H., Carpenter J. F., Crowe L. M. The role of vitrification in anhydrobiosis. Annu Rev Physiol. 1998;60:73–103. doi: 10.1146/annurev.physiol.60.1.73. [DOI] [PubMed] [Google Scholar]
- Crowe J. H., Leslie S. B., Crowe L. M. Is vitrification sufficient to preserve liposomes during freeze-drying? Cryobiology. 1994 Aug;31(4):355–366. doi: 10.1006/cryo.1994.1043. [DOI] [PubMed] [Google Scholar]
- Frauenfelder H. Complexity in proteins. Nat Struct Biol. 1995 Oct;2(10):821–823. doi: 10.1038/nsb1095-821. [DOI] [PubMed] [Google Scholar]
- Frauenfelder H., Leeson D. T. The energy landscape in non-biological and biological molecules. Nat Struct Biol. 1998 Sep;5(9):757–759. doi: 10.1038/1784. [DOI] [PubMed] [Google Scholar]
- Frauenfelder H., Parak F., Young R. D. Conformational substates in proteins. Annu Rev Biophys Biophys Chem. 1988;17:451–479. doi: 10.1146/annurev.bb.17.060188.002315. [DOI] [PubMed] [Google Scholar]
- Frauenfelder H., Petsko G. A., Tsernoglou D. Temperature-dependent X-ray diffraction as a probe of protein structural dynamics. Nature. 1979 Aug 16;280(5723):558–563. doi: 10.1038/280558a0. [DOI] [PubMed] [Google Scholar]
- Frauenfelder H., Sligar S. G., Wolynes P. G. The energy landscapes and motions of proteins. Science. 1991 Dec 13;254(5038):1598–1603. doi: 10.1126/science.1749933. [DOI] [PubMed] [Google Scholar]
- Fritsch K., Friedrich J., Parak F., Skinner J. L. Spectral diffusion and the energy landscape of a protein. Proc Natl Acad Sci U S A. 1996 Dec 24;93(26):15141–15145. doi: 10.1073/pnas.93.26.15141. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Gajhede M., Schuller D. J., Henriksen A., Smith A. T., Poulos T. L. Crystal structure of horseradish peroxidase C at 2.15 A resolution. Nat Struct Biol. 1997 Dec;4(12):1032–1038. doi: 10.1038/nsb1297-1032. [DOI] [PubMed] [Google Scholar]
- Hagen S. J., Hofrichter J., Eaton W. A. Protein reaction kinetics in a room-temperature glass. Science. 1995 Aug 18;269(5226):959–962. doi: 10.1126/science.7638618. [DOI] [PubMed] [Google Scholar]
- Sastry G. M., Agmon N. Trehalose prevents myoglobin collapse and preserves its internal mobility. Biochemistry. 1997 Jun 10;36(23):7097–7108. doi: 10.1021/bi9626057. [DOI] [PubMed] [Google Scholar]
- Srajer V., Champion P. M. Investigations of optical line shapes and kinetic hole burning in myoglobin. Biochemistry. 1991 Jul 30;30(30):7390–7402. doi: 10.1021/bi00244a005. [DOI] [PubMed] [Google Scholar]
- Steinbach P. J., Ansari A., Berendzen J., Braunstein D., Chu K., Cowen B. R., Ehrenstein D., Frauenfelder H., Johnson J. B., Lamb D. C. Ligand binding to heme proteins: connection between dynamics and function. Biochemistry. 1991 Apr 23;30(16):3988–4001. doi: 10.1021/bi00230a026. [DOI] [PubMed] [Google Scholar]
- TEALE F. W. Cleavage of the haem-protein link by acid methylethylketone. Biochim Biophys Acta. 1959 Oct;35:543–543. doi: 10.1016/0006-3002(59)90407-x. [DOI] [PubMed] [Google Scholar]
- Zwanzig R. Diffusion in a rough potential. Proc Natl Acad Sci U S A. 1988 Apr;85(7):2029–2030. doi: 10.1073/pnas.85.7.2029. [DOI] [PMC free article] [PubMed] [Google Scholar]