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Metallomics: Integrated Biometal Science logoLink to Metallomics: Integrated Biometal Science
. 2024 Nov 22;16(12):mfae052. doi: 10.1093/mtomcs/mfae052

Metals in the gut: microbial strategies to overcome nutritional immunity in the intestinal tract

Marisa S Egan 1,2,3, Raquel de Macedo 4,5,6, Joseph P Zackular 7,8,9,
PMCID: PMC13032037  PMID: 39577845

Abstract

Trace metals are indispensable nutritional factors for all living organisms. During host-pathogen interactions, they serve as crucial resources that dictate infection outcomes. Accordingly, the host uses a defense strategy known as nutritional immunity, which relies on coordinated metal chelation to mitigate bacterial advances. In response, pathogens employ complex strategies to secure these resources at sites of infection. In the gastrointestinal (GI) tract, the microbiota must also acquire metals for survival, making metals a central line of competition in this complex ecosystem. In this minireview, we outline how bacteria secure iron, zinc, and manganese from the host with a focus on the GI tract. We also reflect on how host dietary changes impact disease outcomes and discuss therapeutic opportunities to target bacterial metal uptake systems. Ultimately, we find that recent discoveries on the dynamics of transition metals at the host-pathogen-microbiota interface have reshaped our understanding of enteric infections and provided insights into virulence strategies, microbial cooperation, and antibacterial strategies.

Graphical Abstract

Graphical Abstract.

Graphical Abstract

Introduction

Transition metals are essential nutrients for survival across the tree of life, including multicellular organisms, like humans, to single-celled organisms, like bacteria. These trace metals function within biological systems, serving as cofactors for enzymes and structural components in other noncatalytic proteins [1]. In this minireview, we focus on several important metals that have been shown to be central to host-pathogen interactions in the gut: iron, manganese, and zinc. Iron and manganese are redox-active metals and function as vital cofactors involved in numerous cellular processes [2]. Zinc is a redox-inert metal that predominantly resides within enzymes [2]. Zinc assumes a dual role, acting as both an enzyme cofactor and a structural component in proteins [2]. A major paradox that all living organisms must overcome is the fact that these metals are essential, yet excess levels of these micronutrients can lead to cytotoxic effects, so their concentrations must be tightly controlled.

In the context of host-pathogen interactions, transition metals are central to infection outcomes. While the host can acquire trace metals through diet for metabolic needs, bacterial pathogens must obtain these nutrients from the host environment for survival [3,4]. The competition for metal acquisition thus emerges between the host and the pathogen. Mammalian hosts are among the most free-metal restricted environments on earth, as they employ numerous strategies to modulate access to metals and starve or intoxicate the invading pathogen [3,4]. Broadly, this is referred to as nutritional immunity and represents a potent host defense strategy to counter infections [3,4]. Successful bacterial pathogens have developed tactics to evade or exploit nutritional immunity through dedicated metal acquisition, storage, and detoxification systems [3,4]. These pathogens also coordinate the expression of their systems through regulators that sense and respond to metal levels, including metal-binding transcription factors and even regulatory small RNAs [3,4]. Importantly, recent advances have also demonstrated that the gut microbiota plays a critical role in modulating metal bioavailability in the gastrointestinal (GI) tract, subsequently shaping ecological niches during infection.

In this minireview, we provide an overview of recent literature focused on how bacteria acquire and store nutrient metals in the mammalian host, with a specific emphasis on iron, manganese, and zinc (Fig. 1). We outline how bacteria rely on polymicrobial interactions, dedicated organelles, toxin production, and other variable strategies for survival during metal starvation in the host. We specifically focus on the GI tract, where exciting new studies have begun to shed light on mechanisms by which Gram-negative and Gram-positive bacteria circumvent nutritional immunity and thrive in this complex and dynamic ecosystem.

Figure 1.

Figure 1.

The tug-of-war for transition metals at the host-microbe interface. Iron, zinc, and manganese are fundamental transition metals required for many life forms. These critical nutrients dictate dynamics at the host-pathogen-microbiota interface. As the host limits these resources in an effort to control bacterial growth and colonization, microbes must employ strategies to scavenge for transition metals in host tissues and regulate the storage of these acquired nutrients. Created with BioRender.com.

Bacterial strategies to scavenge and store iron during infection

Iron is a micronutrient that is indispensable for many forms of life; however, excess iron can be toxic to certain organisms. In the host, the biologically relevant forms of iron exist in two oxidation states: ferrous iron (Fe2+) and ferric iron (Fe3+) [2]. Due to the importance of iron for the survival of invading pathogens, the host has evolved mechanisms to limit access to free iron in the body. Within the body, iron is stored in complexes like ferritin molecules, heme, metalloproteins, and iron-sulfur proteins [5]. This strategy allows for deployment of the functional capacity of iron while also protecting the host from toxicity and preventing bacterial poaching of this nutrient [5]. For example, transferrin was the first documented iron-binding protein in human blood plasma [3,6]. In addition, lactoferrin is a member of the transferrin superfamily and acts as a multifunctional iron-binding protein found at high concentrations in secretory fluids, including milk and saliva [7]. These proteins represent key antimicrobial strategies for the host, as they serve to deprive pathogens of host iron [3,6,7]. To counteract these host defense tactics, bacterial pathogens use dedicated strategies to procure iron from host tissues and carry out necessary metabolic functions, detailed below.

Bacterial siderophores for iron capture

Siderophores are high-affinity iron chelators secreted by bacteria to scavenge iron in iron-depleted niches [8]. They bind ferric iron with a higher affinity than some host iron-binding proteins; thus, siderophores can effectively strip iron from host proteins, such as transferrin and lactoferrin [9–11]. Upon binding iron, siderophores produce a ferric-siderophore complex that is then imported by the bacteria [8]. Siderophore biosynthesis is a tightly regulated process, orchestrated by major regulators including the ferric uptake regulator (Fur) [12]. This global transcription factor controls iron homeostasis in bacteria and binds ferrous iron as a corepressor [12]. Under iron starvation conditions, binding of Fur is alleviated, allowing for coordinated production of siderophores [12]. Both Gram-positive and Gram-negative pathogens involve siderophores in their virulence strategies [8]. As a countermeasure, the mammalian host produces proteins like lipocalin-2, also known as neutrophil gelatinase-associated lipocalin or siderocalin, to sequester siderophores and interrupt bacterial iron acquisition [13–15]. In response, some pathogens, including members of the Enterobacteriaceae family, have evolved “stealth siderophores” that are unrecognizable by lipocalin-2 due to structural modifications [16]. This evasion strategy allows pathogens to acquire iron even during inflammatory conditions, during which lipocalin-2 is highly expressed [16–18]. For example, the enteric Gram-negative pathogen Salmonella produces salmochelins, which are stealth siderophores that evade sequestration by lipocalin-2 through glucosylation [16] (Fig. 2A). Salmochelins promote the survival of Salmonella in the inflamed gut, helping the pathogen thrive despite nutritional immunity and competition with resident microbiota [17,18]. Still, the extent of siderophore use in complex microbial communities remains unknown, motivating future studies that clarify the impact of siderophores on pathogen colonization and infection outcomes.

Figure 2.

Figure 2.

Bacterial siderophores for transition metal capture. Bacteria utilize high-affinity metal chelators known as siderophores to scavenge transition metals in restrictive host tissues. (A) Salmonella produces the iron-chelating siderophore salmochelin, which is considered to be a “stealth siderophore,” for it evades sequestration by the host protein lipocalin-2. (B) Salmonella secretes the iron-chelating siderophore enterobactin, which is susceptible to lipocalin-2 sequestration. However, the commensal organism Bacteroides thetaiotaomicron produces a siderophore-binding lipoprotein, XusB, that shields enterobactin from lipocalin-2 sequestration. In turn, Bacteroides and Salmonella can utilize enterobactin to scavenge iron. (C) The commensal organism E. coli Nissle produces siderophores to outcompete pathogens like Salmonella. E. coli Nissle uses the siderophore yersiniabactin to scavenge zinc and lipocalin-resistant stealth siderophores to scavenge iron to thrive in the inflamed gut. Created with BioRender.com.

Siderophores are utilized by nonpathogenic commensals and pathogens alike. In fact, some commensals obtain siderophores produced by other microbes, known as xenosiderophores. For example, a member of the human gut microbiota, Bacteroides thetaiotaomicron, capitalizes on siderophore cross-feeding to survive in the inflamed gut, utilizing siderophores produced by commensal and pathogenic Enterobacteriaceae [19]. Recent work revealed that this commensal secretes a siderophore-binding lipoprotein (XusB) to utilize enterobactin, a siderophore produced by Salmonella [20] (Fig. 2B). Thus, XusB allows B. thetaiotaomicron to subsist despite the metal starvation induced by intestinal inflammation during Salmonella infection. Notably, when enterobactin is bound to XusB, the siderophore is protected from lipocalin-2 sequestration, thereby also helping Salmonella evade nutritional immunity [20] (Fig. 2B). However, commensals can also compete with pathogens for iron in the inflamed gut. The probiotic strain E. coli Nissle outcompetes Salmonella in mouse models through iron uptake mechanisms, including the use of stealth siderophores [21] (Fig. 2C). In fact, E. coli Nissle requires these systems to limit Salmonella colonization [21] (Fig. 2C). Future studies are needed to further elucidate the contributions of commensals in defining host microbial niches via iron availability.

Heme as an iron source for bacteria

In vertebrates, the majority of iron is complexed to heme, which associates with hemoglobin in circulating erythrocytes [22]. As an iron reservoir, heme contributes to nutritional immunity by limiting iron availability to bacteria [22]. Still, bacterial pathogens can exploit host heme to acquire iron. While some bacteria are able to synthesize heme de novo, others must acquire it from the host. Several pathogens have developed strategies to use heme as an iron source in the GI tract through hemolysins, heme transporters, among other heme uptake systems. Vibrio cholerae, the causative agent of cholera, induces secretory diarrhea through cholera toxin. In neonatal rabbit models of infection, cholera toxin leads to iron-scarcity in the gut, yet this iron depletion is independent of intestinal inflammation [23]. To overcome this limitation, V. cholerae increases expression of its heme uptake systems and the siderophore vibriobactin during infection, which ultimately confers a fitness advantage for the pathogen [23]. These findings demonstrate that V. cholerae may exploit host heme as a survival tactic in the iron-scarce intestinal niche. Campylobacter jejuni serves as another example of a Gram-negative enteric pathogen that utilizes heme to successfully colonize the mammalian host. This bacterium encodes genes dedicated to heme utilization and regulation, including the heme uptake regulator, heuR [24]. In fact, C. jejuni requires HeuR to colonize the GI tract of chickens and to utilize heme as an iron source [24].

Additionally, the Gram-positive organism Enterococcus faecalis colonizes the human intestinal tract as a commensal and an opportunistic pathogen. E. faecalis cannot synthesize its own heme, but encodes several heme-requiring enzymes, thus this bacterium must scavenge for heme from the environment [25,26]. A recent study found that E. faecalis can internalize and extract iron from heme [27]. In fact, under iron-depleted conditions, heme supplementation restores the growth and virulence of an E. faecalis mutant that lacks iron transport systems [27]. Thus, heme is an important source of iron for E. faecalis. The impact of polymicrobial communities on heme availability in the gut is also important to consider. In a collaborative study, our team recently demonstrated that Enterococcus blooms during Clostridioides difficile infection (CDI) and enhances the virulence of C. difficile [28]. Toxin production by C. difficile damages the colonic epithelium, liberating host heme that can be subsequently leveraged by E. faecalis to perform aerobic respiration and thrive in dysanaerobiosis during CDI [29]. Additional studies have demonstrated that E. faecalis can acquire heme from other bacteria, like Staphylococcus aureus and E. coli, through cross-feeding in vitro [30,31]. These findings further underscore the importance of microbe-microbe interactions on heme acquisition for pathogens like E. faecalis. Notably, C. difficile also contends with host heme through machinery that senses and detoxifies excess heme, including the HatRT and HsmRA systems [32,33]. The HsmRA system even protects C. difficile from oxidative stress by co-opting exogenous heme [33]. Altogether, these studies reflect the importance of bacterial strategies to acquire and repurpose host heme in the inflamed gut for survival.

Ferrosomes: bacterial iron storage organelles

Once iron has been acquired, storage strategies are essential to mitigate toxicity; however, until lately, very little has been known about metal chaperones and storage strategies in bacteria. Recent studies discovered that the Gram-negative environmental anaerobes Desulfovibrio magneticus, Rhodopseudomonas palustris, and Shewanella putrefaciens harbor iron storage organelles known as ferrosomes [34]. Whether Gram-positive pathogens also generate ferrosomes remained unclear, until a recent finding identified the iron storage system in C. difficile [35]. Importantly, this study uncovered the relevance of ferrosomes in vivo, as these iron granules allow C. difficile to overcome nutritional immunity mediated by the host metal-chelating protein calprotectin [35] (Fig. 3A). Thus, ferrosomes enable the pathogen to survive and persist in the inflamed gut [35]. Future studies are needed to investigate whether ferrosomes and other related bacterial organelles play pivotal roles in the pathogenesis of other enteric bacteria.

Figure 3.

Figure 3.

Bacterial strategies to overcome calprotectin-mediated metal starvation. Calprotectin is a host metal-chelating protein that facilitates nutritional immunity. To overcome this host defense tactic, bacterial pathogens have evolved strategies to import and store nutrient metals despite calprotectin-mediated sequestration. (A) Clostridioides difficile utilizes transport systems like ZupT to import zinc; this pathogen also harbors dedicated iron-storage organelles known as ferrosomes. (B) To import zinc, Acinetobacter baumannii uses the ZnuABCD transport system; to maintain zinc homeostasis, the opportunistic pathogen relies on the metallosensor Zur, which regulates expression of zrlA, coding for a zinc-binding peptidase. (C) Salmonella harbors several metal transport systems, including ZupT for zinc import and SitABCD and MntH for manganese import; this pathogen also uses the manganese superoxide dismutase SodA to detoxify reactive oxygen species (ROS). Created with BioRender.com.

Targeting bacterial iron uptake machinery for therapeutic options

Owing to the importance of iron uptake machinery for pathogen survival in the host, new developments have focused on targeting these systems for therapeutic purposes. In particular, siderophores offer a unique therapeutic opportunity to deliver antibiotics by exploiting siderophore transport machinery. Most recently, a synthetic enterobactin mimetic conjugated to the β-lactam antibiotic ampicillin yielded selective transport of the drug to multiple Gram-negative bacterial pathogens and subsequently enhanced killing of the bacteria [36,37]. Hijacking siderophores as antibiotic delivery vectors represents a promising approach for targeted drug delivery and increased antimicrobial activity [36,37]. Moreover, siderophore-based vaccines offer a compelling approach to target Enterobacteriaceae [38–40]. Recent work revealed that enterobactin immunization protected mice from colonization with adherent-invasive E. coli (AIEC) during colitis [40]. Since AIEC is prevalent in patients suffering from Crohn's disease, this immunization strategy could prove to be a viable alternative to antibiotic use. Ultimately, due to the rise of antimicrobial resistance, future work exploring antibacterial applications of targeting bacterial iron transport systems will be of great interest and importance to the field.

The impact of zinc and manganese on infection outcomes

In addition to iron, bacterial survival hinges on acquiring other micronutrients from the host during infection. These include, but are not limited to, zinc and manganese. To survive oxidative stress as well as iron-deprivation, many bacterial species rely on manganese in critical metalloproteins, including redox-active enzymes [41]. In fact, several pathogens encode manganese-dependent superoxide dismutase (SodA) to detoxify reactive oxygen species (ROS) or leverage free manganese as an ROS detoxification strategy [42–45]. Zinc is the most common enzyme-associated transition metal and serves as an essential cofactor and/or structure component in numerous bacterial proteins, including metalloproteases [2]. To restrict pathogen colonization, the host withholds zinc and manganese using metal transporters and metal chelators [3,4]. As mentioned previously, calprotectin is an antimicrobial protein that binds and sequesters different transition metals, including iron, zinc, and manganese [46–50]. While calprotectin is a secreted protein and acts extracellularly, other host proteins restrict access to transition metal within cellular compartments to combat intracellular pathogens. In macrophages, the natural resistance-associated macrophage protein 1 transports divalent cations, including iron, manganese, cobalt, and magnesium, out of phagosomes in an attempt to starve vacuolar pathogens like Salmonella [51–55]. To combat these host defense maneuvers, bacteria use coordinated responses to acquire manganese and zinc from the host while also avoiding metal intoxication.

Manganese transport systems promote bacterial survival

Though Gram-negative bacteria often have iron-centric metabolisms, they still can rely heavily on manganese, especially in the face of antimicrobials in the host. Salmonella harbors high-affinity manganese transporters, including MntH and SitABCD, and these systems are required for the pathogen to withstand nitrosative stress in vitro [56]. Importantly, these manganese transporters along with a manganese SodA support the growth of Salmonella in vivo [57]. Upon Salmonella infection in mice, manganese is scarce in the gut, a hallmark of nutritional immunity [57]. However, manganese transporters enable Salmonella to withstand inflammatory defenses, including ROS generation and calprotectin-mediated metal sequestration [57] (Fig. 3C). In fact, these transporters help Salmonella outcompete commensal E. coli to gain a competitive advantage, suggesting that manganese is a critical resource that influences host-pathogen-microbiota interactions in the inflamed gut [57]. Gram-positive bacteria also employ high-affinity manganese transporters to secure the nutrient under restrictive host conditions. A recent study revealed the primary manganese acquisition systems in E. faecalis, namely the EfaCBA, MntH1, and MntH2 systems [58]. These transporters promote the growth of E. faecalis in vitro during manganese restriction and augment the virulence of E. faecalis in several animal models of infection [58]. Overall, these studies suggest that manganese uptake is an important component of the virulence strategies for both Gram-negative and Gram-positive pathogens.

Zinc transport systems promote bacterial survival

Bacteria also harbor high-affinity zinc transport systems to capture zinc from the host environment and survive metal starvation. Members of the Enterobacteriaceae family, including Salmonella, express transport machinery to import zinc, including ZnuABCD and ZupT [46,59–62]. These uptake systems protect Salmonella from oxidative stress in vitro and support the virulence of Salmonella in vivo [59,60,63,64]. Recently, it was observed that E. coli Nissle is more resistant to zinc starvation induced by calprotectin than Salmonella due to an additional zinc-acquisition method [65]. E. coli Nissle uses the metallophore yersiniabactin to scavenge zinc and thrive in the inflamed gut [65] (Fig. 2C). While this siderophore is absent in Salmonella, it is present in other pathogenic Enterobacteriaceae, including Yersinia [65]. Notably, yersiniabactin is one example of a siderophore that can bind metals other than iron. The opportunistic Gram-negative pathogen Acinetobacter baumannii most commonly infects the lung, urinary tract, and blood, where it must overcome zinc restriction. Interestingly, emerging data suggests A. baumannii can colonize and persist in the GI tract [66]. A. baumannii utilizes the ZnuABCD transport system to import zinc and relies on the regulator Zur to maintain zinc homeostasis, for this transcription factor promotes bacterial survival during both zinc-deficient and zinc-replete conditions [49,67,68]. The relevance of Zur was also observed in vivo, as this metallosensor supports the dissemination of A. baumannii during calprotectin-mediated metal sequestration in mouse models of lung infection [49,67,69] (Fig. 3B). Recent work characterized the structure of Zur from A. baumannii while also elucidating its zinc binding affinity and dynamics [70]. The Zur regulon in A. baumannii includes zrlA, which encodes a zinc-binding peptidase that maintains cell envelope integrity [67,71] (Fig. 3B). Although the majority of studies in A. baumannii have focused on the role of metals in lung infection, the emergence of evidence of a potential gut reservoir makes these findings important to consider in the context of the GI tract [66].

Zinc acquisition is similarly critical for Gram-positive bacteria. A recent study demonstrated the ability of the opportunistic Gram-positive pathogen methicillin-resistant Staphylococcus aureus (MRSA) to colonize the GI tract of germ-free mice [72]. Furthermore, intestinal colonization is commonly observed in hospitalized human patients [72]. S. aureus relies on metal-responsive regulators to overcome metal limitation imposed by calprotectin, including Zur and Fur, as well as the ATP-dependent Clp protease [73]. Although much of this work has focused on nasal, skin, and systemic colonization and infection, there is likely an unexplored role for metals in the gut niche of S. aureus. Streptococcus agalactiae (Group B Streptococcus), which colonizes the GI and female reproductive tracts, requires three zinc binding proteins, adcA, adcAII, and lmb, to overcome zinc limitation by calprotectin [74]. The role of these proteins in gut colonization and systemic invasion remains unclear but is a key area of investigation [75]. C. difficile employs the high-affinity metal importer, ZupT, to import zinc during calprotectin-mediated metal starvation, thereby overcoming nutritional immunity during infection [76] (Fig. 3A). In addition, E. faecalis relies on the AdcACB/AdcAII system to maintain zinc homeostasis, particularly during zinc-depletion [77]. This system even contributes to the virulence of E. faecalis, further underscoring the importance of zinc import for bacterial pathogenesis [77]. Notably, common members of the healthy gut microbiota, like Lactobacillaceae, also encounter changes in metal availability. A recent study discovered that Lactobacillaceae harbor genes encoding predicted zinc transporters, motivating future work to uncover the roles of these systems in zinc uptake and homeostasis [78].

However, excess zinc can be toxic to certain bacteria, which the host exploits to limit bacterial invasion. For instance, human macrophages deliver zinc-containing vesicles to intracellular bacteria, such as Salmonella and even nonpathogenic E. coli, to induce zinc toxicity and promote bacterial clearance [79]. A recent study found that zinc overload inhibits iron-sulfur cluster biogenesis in E. coli, suggesting a possible mechanism underlying zinc toxicity in bacteria [80]. Moreover, excess zinc can also impact the gut microbiota, as high zinc levels reduce the growth of Lactobacillus species during in vitro conditions [78]. Additional studies are needed to understand the impact of zinc intoxication on bacteria, particularly in the context of the host and gut ecology.

Dietary zinc and dietary manganese modulate infection outcomes

Since the host typically secures transition metals through diet, a growing body of literature suggests that host dietary changes in metal homeostasis impact susceptibility to infection as well as disease outcomes. In particular, host diet can alter the diversity and structure of the gut microbiota. Dietary iron has lasting impacts on host and microbial metabolites in murine fecal content [81]. Moreover, it was recently observed that excess dietary zinc shifts the gut microbiota in mice [82]. This microbial community often protects the host through colonization resistance, thereby opposing the invasion and expansion of exogenous enteric pathogens. Thus, disruptions of the gut microbiota can prove detrimental to the host. For example, antibiotic use perturbs the gut microbiota and, thus, profoundly increases susceptibility to invading pathogens, like C. difficile. In the context of CDI, alterations to the gut microbiota mediated by excess dietary zinc lower the threshold of antibiotics required to confer susceptibility to C. difficile and worsen infection in mice [82]. Ultimately, excess dietary zinc helps C. difficile overcome calprotectin-mediated host sequestration of zinc, suggesting that dietary considerations may be useful in mitigating CDI [82].

For other pathogens, zinc deficiency is associated with altered susceptibility to infection. Zinc deficiency promotes the virulence of the enteric pathogen enteroaggregative E. coli in mice, while also remodeling the host immune response, resulting in enhanced disease [83,84]. Zinc even impairs the virulence of a related pathogen, enteropathogenic E. coli (EPEC). By damaging the cell membranes of EPEC, zinc induces the RpoE stress response pathway and consequently inhibits the virulence of EPEC in vitro [85,86]. These observations are especially intriguing, given that oral rehydration salts are often given with dietary zinc supplements to treat acute diarrheal infections across the globe. Altogether, this suggests that zinc supplementation can impair the virulence of certain bacterial pathogens while also promoting protective host responses in certain infectious contexts. Beyond dietary zinc, dietary manganese also regulates host-pathogen interactions. For example, high dietary manganese exacerbates S. aureus infection of the heart in mice [87]. Still, the dietary impact of manganese among other transition metals on host-microbe interactions remains understudied and represents a promising area for future research.

Conclusions and perspectives

Transition metals act as coveted resources at the host-pathogen-microbiota interface. The GI tract serves as a dynamic stage that showcases the tug-of-war between the host and microbes over these micronutrients. While the host strives to limit bacterial expansion by controlling metal availability, bacteria have developed strategies to extract these commodities from host tissues and survive in the face of nutritional immunity. In this minireview, we have highlighted a select few recent studies that illustrate how both Gram-negative and Gram-positive bacteria secure iron, zinc, and manganese from the host, employing strategies that hinge on polymicrobial interactions, dedicated storage organelles, and versatile transport systems. These tactics are finely tuned by bacterial regulators and downstream factors that sense and respond to metal concentrations. Altogether, these findings motivate future work aimed at deciphering the complexities of bacterial metal acquisition in the gut. For example, it remains unknown how transition metals shape the early life gut ecosystem and little is known about the role that metal competition plays in succession of the microbiome early in life. Furthermore, it is unclear how microbe-microbe competition for metals in the GI tract influences the health of the host, microbial community composition, colonization resistance, and ultimately infection outcomes. Recent observations also suggest that there are compelling opportunities to target bacterial metal uptake pathways for therapeutic purposes, including novel antibiotics and vaccine strategies. Further investigations exploring the potential of exploiting the machinery that enteric pathogens dedicate to overcoming nutritional immunity could prove useful to combatting GI infections. In conclusion, nutrient metals shape infection dynamics, impacting microbial ecosystems, host responses, and even bacterial gene regulation and physiology. Understanding how individual microbes, pathogens, and commensals alike, confront metal starvation in the host is critical to our understanding of human health and disease. Future studies that continue to define bacterial maneuvers to endure nutritional immunity will yield critical insights that could eventually be leveraged to treat enteric infections and improve disease outcomes.

Contributor Information

Marisa S Egan, Division of Protective Immunity, Children's Hospital of Philadelphia, Philadelphia, PA 19104, USA; Department of Pathology and Laboratory Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA; Department of Biology, Swarthmore College, Swarthmore, PA 19081, USA.

Raquel de Macedo, Division of Protective Immunity, Children's Hospital of Philadelphia, Philadelphia, PA 19104, USA; Department of Pathology and Laboratory Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA; Department of Microbiology, Faculdade de Ciências Médicas da Santa Casa de São Paulo, São Paulo, SP 01224-001, Brazil.

Joseph P Zackular, Division of Protective Immunity, Children's Hospital of Philadelphia, Philadelphia, PA 19104, USA; Department of Pathology and Laboratory Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA; The Center for Microbial Medicine, Children's Hospital of Philadelphia, Philadelphia, PA 19104, USA.

Data availability

No new data were generated or analyzed in support of this research.

References

  • 1. Andreini  C, Bertini  I, Cavallaro  G  et al.  Metal ions in biological catalysis: from enzyme databases to general principles. J Biol Inorg Chem  2008;13:1205–18. 10.1007/s00775-008-0404-5 [DOI] [PubMed] [Google Scholar]
  • 2. Maret  W. Metalloproteomics, metalloproteomes, and the annotation of metalloproteins. Metallomics  2010;2:117–25. 10.1039/B915804A [DOI] [PubMed] [Google Scholar]
  • 3. Antelo  GT, Vila  AJ, Giedroc  DP  et al.  Molecular evolution of transition metal bioavailability at the host—pathogen interface. Trends Microbiol  2021;29:441–57. 10.1016/j.tim.2020.08.001 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 4. Murdoch  CC, Skaar  EP. Nutritional immunity: the battle for nutrient metals at the host—pathogen interface. Nat Rev Micro  2022;20:657–70. 10.1038/s41579-022-00745-6 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 5. Monteith  AJ, Skaar  EP. The impact of metal availability on immune function during infection. Trends Endocrinol Metab  2021;32:916–28. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 6. Sheldon  JR, Laakso  HA, Heinrichs  DE. Iron acquisition strategies of bacterial pathogens. Kudva  IT,, Cornick  NA (eds.). Microbiol Spectr  2016;4:4.2.05. 10.1128/microbiolspec.VMBF-0010-2015 [DOI] [PubMed] [Google Scholar]
  • 7. Kell  DB, Heyden  EL, Pretorius  E. The biology of lactoferrin, an iron-binding protein that can help defend against viruses and bacteria. Front Immunol  2020;11:1221. 10.3389/fimmu.2020.01221 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 8. Crosa  JH, Walsh  CT. Genetics and assembly line enzymology of siderophore biosynthesis in bacteria. Microbiol Mol Biol Rev  2002;66:223–49. 10.1128/MMBR.66.2.223-249.2002 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 9. Ford  S, Cooper  RA, Evans  RW  et al.  Domain preference in iron removal from human transferrin by the bacterial siderophores aerobactin and enterochelin. Eur J Biochem  1988;178:477–81. 10.1111/j.1432-1033.1988.tb14473.x [DOI] [PubMed] [Google Scholar]
  • 10. Mazurier  J, Spik  G. Comparative study of the iron-binding properties of human transferrinsI. Complete and sequential iron saturation and desaturation of the lactotransferrin. Biochim Biophys Acta (BBA) Gen Subj  1980;629:399–408. 10.1016/0304-4165(80)90112-9 [DOI] [PubMed] [Google Scholar]
  • 11. Garibaldi  JA, Neilands  JB. Formation of iron-binding compounds by micro-organisms. Nature  1956;177:526–7. 10.1038/177526a0 [DOI] [PubMed] [Google Scholar]
  • 12. Troxell  B, Hassan  HM. Transcriptional regulation by Ferric Uptake Regulator (Fur) in pathogenic bacteria. Front Cell Infect Microbiol  2013;3:59, 10.3389/fcimb.2013.00059 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 13. Flo  TH, Smith  KD, Sato  S  et al.  Lipocalin 2 mediates an innate immune response to bacterial infection by sequestrating iron. Nature  2004;432:917–21. 10.1038/nature03104 [DOI] [PubMed] [Google Scholar]
  • 14. Bao  G-H, Ho  C-T, Barasch  J. The ligands of neutrophil gelatinase-associated lipocalin. RSC Adv  2015;5:104363–74. 10.1039/C5RA18736B [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 15. Holmes  MA, Paulsene  W, Jide  X  et al.  Siderocalin (Lcn 2) also binds carboxymycobactins, potentially defending against mycobacterial infections through iron sequestration. Structure  2005;13:29–41. 10.1016/j.str.2004.10.009 [DOI] [PubMed] [Google Scholar]
  • 16. Fischbach  MA, Lin  H, Zhou  L  et al.  The pathogen-associated iroA gene cluster mediates bacterial evasion of lipocalin 2. Proc Natl Acad Sci USA  2006;103:16502–7. 10.1073/pnas.0604636103 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 17. Raffatellu  M, George  MD, Akiyama  Y  et al.  Lipocalin-2 resistance confers an advantage to Salmonella enterica serotype Typhimurium for growth and survival in the inflamed intestine. Cell Host Microbe  2009;5:476–86. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 18. Crouch  MV, Castor  M, Karlinsey  JE  et al.  Biosynthesis and IroC-dependent export of the siderophore salmochelin are essential for virulence of Salmonella enterica serovar Typhimurium. Mol Microbiol  2008;67:971–83. 10.1111/j.1365-2958.2007.06089.x [DOI] [PubMed] [Google Scholar]
  • 19. Zhu  W, Winter  MG, Spiga  L  et al.  Xenosiderophore utilization promotes Bacteroides thetaiotaomicron resilience during colitis. Cell Host Microbe  2020;27:376–88.e8. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 20. Spiga  L, Fansler  RT, Perera  YR  et al.  Iron acquisition by a commensal bacterium modifies host nutritional immunity during Salmonella infection. Cell Host Microbe  2023;31:1639–54.e10. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 21. Deriu  E, Liu  JZ, Pezeshki  M  et al.  Probiotic bacteria reduce Salmonella typhimurium intestinal colonization by competing for iron. Cell Host Microbe  2013;14:26–37. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 22. Cassat  JE, Skaar  EP. Iron in infection and immunity. Cell Host Microbe  2013;13:509–19. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 23. Rivera-Chávez  F, Mekalanos  JJ. Cholera toxin promotes pathogen acquisition of host-derived nutrients. Nature  2019;572:244–8. 10.1038/s41586-019-1453-3 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 24. Johnson  JG, Gaddy  JA, DiRita  VJ. The PAS domain-containing protein HeuR regulates heme uptake in Campylobacter jejuni. Henderson  JP,, Hultgren  SJ (eds.). mBio  2016;7:e01691–16. 10.1128/mBio.01691-16 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 25. Fiore  E, Van Tyne  D, Gilmore  MS. Pathogenicity of Enterococci. Fischetti  VA, Novick  RP,, Ferretti  JJ  et al. (eds.). Microbiol Spectr  2019;7:7.4.9. 10.1128/microbiolspec.GPP3-0053-2018 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 26. Baureder  M, Hederstedt  L. Heme proteins in lactic acid bacteria. Advances in Microbial Physiology. Vol; 62. Elsevier, 2013; 1–43. [DOI] [PubMed] [Google Scholar]
  • 27. Brunson  DN, Colomer-Winter  C, Lam  LN  et al.  Identification of multiple iron uptake mechanisms in Enterococcus faecalis and their relationship to virulence. Raffatellu  M (ed.). Infect Immun  2023;91:e00496–22. 10.1128/iai.00496-22 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 28. Smith  AB, Jenior  ML, Keenan  O  et al.  Enterococci enhance Clostridioides difficile pathogenesis. Nature  2022;611:780–6. 10.1038/s41586-022-05438-x [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 29. Smith  AB, Specker  JT, Hewlett  KK  et al.  Liberation of host heme by Clostridioides difficile- mediated damage enhances Enterococcus faecalis fitness during infection. Kline  KA (ed.). mBio  2024;15:e01656–23. 10.1128/mbio.01656-23 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 30. Ch'ng  J-H, Muthu  M, Chong  KKL  et al.  Heme cross-feeding can augment Staphylococcus aureus and Enterococcus faecalis dual species biofilms. ISME J  2022;16:2015–26. 10.1038/s41396-022-01248-1 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 31. Saillant  V, Lipuma  D, Ostyn  E  et al.  A novel Enterococcus faecalis Heme Transport Regulator (FhtR) senses host heme to control its intracellular homeostasis. Dunny  GM (ed.). mBio  2021;12:e03392–20. 10.1128/mBio.03392-20 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 32. Knippel  RJ, Zackular  JP, Moore  JL  et al.  Heme sensing and detoxification by HatRT contributes to pathogenesis during Clostridium difficile infection. Koehler  TM (ed.). PLoS Pathog  2018;14:e1007486. 10.1371/journal.ppat.1007486 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 33. Knippel  RJ, Wexler  AG, Miller  JM  et al.  Clostridioides difficile senses and hijacks host heme for incorporation into an oxidative stress defense system. Cell Host Microbe  2020;28:411–21.e6. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 34. Grant  CR, Amor  M, Trujillo  HA  et al.  Distinct gene clusters drive formation of ferrosome organelles in bacteria. Nature  2022;606:160–4. 10.1038/s41586-022-04741-x [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 35. Pi  H, Sun  R, McBride  JR  et al.  Clostridioides difficile ferrosome organelles combat nutritional immunity. Nature  2023;623:1009–16. 10.1038/s41586-023-06719-9 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 36. Guo  C, Nolan  EM. Exploring the antibacterial activity and cellular fates of enterobactin—drug conjugates that target gram-negative bacterial pathogens. Acc Chem Res  2024;57:1046–56. 10.1021/acs.accounts.3c00814 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 37. Motz  RN, Guo  C, Sargun  A  et al.  Conjugation to native and nonnative triscatecholate siderophores enhances delivery and antibacterial activity of a β-lactam to gram-negative bacterial pathogens. J Am Chem Soc  2024;146:7708–22. 10.1021/jacs.3c14490 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 38. Mike  LA, Smith  SN, Sumner  CA  et al.  Siderophore vaccine conjugates protect against uropathogenic Escherichia coli urinary tract infection. Proc Natl Acad Sci USA  2016;113:13468–73. 10.1073/pnas.1606324113 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 39. Sassone-Corsi  M, Chairatana  P, Zheng  T  et al.  Siderophore-based immunization strategy to inhibit growth of enteric pathogens. Proc Natl Acad Sci USA  2016;113:13462–7. 10.1073/pnas.1606290113 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 40. Gerner  RR, Hossain  S, Sargun  A  et al.  Siderophore immunization restricted colonization of adherent-invasive Escherichia coli and ameliorated experimental colitis. Heran Darwin  K (ed.). mBio  2022;13:e02184–22. 10.1128/mbio.02184-22 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 41. Čapek  J, Večerek  B. Why is manganese so valuable to bacterial pathogens?  Front Cell Infect Microbiol  2023;13:943390. 10.3389/fcimb.2023.943390 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 42. Hassett  DJ, Schweizer  HP, Ohman  DE. Pseudomonas aeruginosa sodA and sodB mutants defective in manganese- and iron-cofactored superoxide dismutase activity demonstrate the importance of the iron-cofactored form in aerobic metabolism. J Bacteriol  1995;177:6330–7. 10.1128/jb.177.22.6330-6337.1995 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 43. Wasselin  V, Staerck  C, Rincé  I  et al.  Characterisation of the manganese superoxide dismutase of Enterococcus faecium. Res Microbiol  2021;172:103876. 10.1016/j.resmic.2021.103876 [DOI] [PubMed] [Google Scholar]
  • 44. Keele  BB, McCord  JM, Fridovich  I. Superoxide dismutase from Escherichia coli B. A new manganese-containing enzyme. J Biol Chem  1970;245:6176–81. 10.1016/S0021-9258(18)62675-4 [DOI] [PubMed] [Google Scholar]
  • 45. Tsolis  RM, Bäumler  AJ, Heffron  F. Role of Salmonella typhimurium Mn-superoxide dismutase (SodA) in protection against early killing by J774 macrophages. Infect Immun  1995;63:1739–44. 10.1128/iai.63.5.1739-1744.1995 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 46. Liu  JZ, Jellbauer  S, Poe  AJ  et al.  Zinc Sequestration by the neutrophil protein calprotectin enhances Salmonella growth in the inflamed gut. Cell Host Microbe  2012;11:227–39. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 47. Gaddy  JA, Radin  JN, Loh  JT  et al.  The host protein calprotectin modulates the Helicobacter pylori cag Type IV secretion system via zinc sequestration. Salama  NR (ed.). PLoS Pathog  2014;10:e1004450. 10.1371/journal.ppat.1004450 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 48. Kehl-Fie  TE, Chitayat  S, Hood  MI  et al.  Nutrient metal sequestration by calprotectin inhibits bacterial superoxide defense, enhancing neutrophil killing of Staphylococcus aureus. Cell Host Microbe  2011;10:158–64. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 49. Hood  MI, Mortensen  BL, Moore  JL  et al.  Identification of an Acinetobacter baumannii zinc acquisition system that facilitates resistance to calprotectin-mediated zinc sequestration. Isberg  RR (ed.). PLoS Pathog  2012;8:e1003068. 10.1371/journal.ppat.1003068 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 50. Zackular  JP, Chazin  WJ, Skaar  EP. Nutritional immunity: S100 proteins at the host-pathogen interface. J Biol Chem  2015;290:18991–8. 10.1074/jbc.R115.645085 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 51. Gruenheid  S, Pinner  E, Desjardins  M  et al.  Natural resistance to infection with intracellular pathogens: the Nramp1 protein is recruited to the membrane of the phagosome. J Exp Med  1997;185:717–30. 10.1084/jem.185.4.717 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 52. Forbes  JR, Gros  P. Iron, manganese, and cobalt transport by Nramp1 (Slc11a1) and Nramp2 (Slc11a2) expressed at the plasma membrane. Blood  2003;102:1884–92. 10.1182/blood-2003-02-0425 [DOI] [PubMed] [Google Scholar]
  • 53. Cuellar-Mata  P, Jabado  N, Liu  J  et al.  Nramp1 modifies the fusion of Salmonella typhimurium-containing vacuoles with cellular endomembranes in macrophages. J Biol Chem  2002;277:2258–65. 10.1074/jbc.M105508200 [DOI] [PubMed] [Google Scholar]
  • 54. Vidal  S, Tremblay  ML, Govoni  G  et al.  The Ity/Lsh/Bcg locus: natural resistance to infection with intracellular parasites is abrogated by disruption of the Nramp1 gene. J Exp Med  1995;182:655–66. 10.1084/jem.182.3.655 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 55. Ehrnstorfer  IA, Geertsma  ER, Pardon  E  et al.  Crystal structure of a SLC11 (NRAMP) transporter reveals the basis for transition-metal ion transport. Nat Struct Mol Biol  2014;21:990–6. 10.1038/nsmb.2904 [DOI] [PubMed] [Google Scholar]
  • 56. Yousuf  S, Karlinsey  JE, Neville  SL  et al.  Manganese import protects Salmonella enterica serovar Typhimurium against nitrosative stress. Metallomics  2020;12:1791–801. 10.1039/d0mt00178c [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 57. Diaz-Ochoa  VE, Lam  D, Lee  CS  et al.  Salmonella mitigates oxidative stress and thrives in the inflamed gut by evading calprotectin-mediated manganese sequestration. Cell Host Microbe  2016;19:814–25. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 58. Colomer-Winter  C, Flores-Mireles  AL, Baker  SP  et al.  Manganese acquisition is essential for virulence of Enterococcus faecalis. Skaar  EP (ed.). PLoS Pathog  2018;14:e1007102. 10.1371/journal.ppat.1007102 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 59. Ammendola  S, Pasquali  P, Pistoia  C  et al.  High-affinity Zn2+ uptake system ZnuABC is required for bacterial zinc homeostasis in intracellular environments and contributes to the virulence of Salmonella enterica. Infect Immun  2007;75:5867–76. 10.1128/IAI.00559-07 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 60. Campoy  S, Jara  M, Busquets  N  et al.  Role of the high-affinity zinc uptake znuABC system in Salmonella enterica Serovar Typhimurium virulence. Infect Immun  2002;70:4721–5. 10.1128/IAI.70.8.4721-4725.2002 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 61. Grass  G, Franke  S, Taudte  N  et al.  The metal permease ZupT from Escherichia coli is a transporter with a broad substrate spectrum. J Bacteriol  2005;187:1604–11. 10.1128/JB.187.5.1604-1611.2005 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 62. Taudte  N, Grass  G. Point mutations change specificity and kinetics of metal uptake by ZupT from Escherichia coli. Biometals  2010;23:643–56. 10.1007/s10534-010-9319-z [DOI] [PubMed] [Google Scholar]
  • 63. Cerasi  M, Liu  JZ, Ammendola  S  et al.  The ZupT transporter plays an important role in zinc homeostasis and contributes to Salmonella enterica virulence. Metallomics  2014;6:845–53. 10.1039/C3MT00352C [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 64. Karlinsey  JE, Maguire  ME, Becker  LA  et al.  The phage shock protein PspA facilitates divalent metal transport and is required for virulence of Salmonella enterica sv. Typhimurium. Mol Microbiol  2010;78:669–85. 10.1111/j.1365-2958.2010.07357.x [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 65. Behnsen  J, Zhi  H, Aron  AT  et al.  Siderophore-mediated zinc acquisition enhances enterobacterial colonization of the inflamed gut. Nat Commun  2021;12:7016. 10.1038/s41467-021-27297-2 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 66. Ketter  PM, Yu  J-J, Guentzel  MN  et al.  Acinetobacter baumannii gastrointestinal colonization is facilitated by secretory IgA which is reductively dissociated by. Bacterial Thioredoxin A., Ballard  JD (ed.). mBio  2018;9:e01298–18. 10.1128/mBio.01298-18 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 67. Mortensen  BL, Rathi  S, Chazin  WJ  et al.  Acinetobacter baumannii response to host-mediated zinc limitation requires the transcriptional regulator zur. J Bacteriol  2014;196:2616–26. 10.1128/JB.01650-14 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 68. Hesse  LE, Lonergan  ZR, Beavers  WN  et al.  The Acinetobacter baumannii Znu system overcomes host-imposed nutrient zinc limitation. Whiteley  M (ed.). Infect Immun  2019;87:e00746–19. 10.1128/IAI.00746-19 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 69. Wang  J, Lonergan  ZR, Gonzalez-Gutierrez  G  et al.  Multi-metal restriction by calprotectin impacts de novo flavin biosynthesis in Acinetobacter baumannii. Cell Chem Biol  2019;26:745–755.e7.e7. 10.1016/j.chembiol.2019.02.011 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 70. Kim  M, Le  MT, Fan  L  et al.  Characterization of the Zinc Uptake Repressor (Zur) from Acinetobacter baumannii. Biochemistry  2024;63:660–70. 10.1021/acs.biochem.3c00679 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 71. Lonergan  ZR, Nairn  BL, Wang  J  et al.  An Acinetobacter baumannii, zinc-regulated peptidase maintains cell wall integrity during immune-mediated nutrient sequestration. Cell Rep  2019;26:2009–2018.e6.e6. 10.1016/j.celrep.2019.01.089 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 72. Zhou  C, Pawline  MB, Pironti  A  et al.  Microbiota and metabolic adaptation shape Staphylococcus aureus virulence and antimicrobial resistance during intestinal colonization. 2024; bioRxiv. 10.1101/2024.05.11.593044 [DOI] [Google Scholar]
  • 73. Reyes Ruiz  VM, Freiberg  JA, Weiss  A  et al.  Coordinated adaptation of Staphylococcus aureus to calprotectin-dependent metal sequestration. Kline  KA (ed.). mBio  2024;15:e01389–24. 10.1128/mbio.01389-24 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 74. Burcham  LR, Le Breton  Y, Radin  JN  et al.  Identification of zinc-dependent mechanisms used by Group B Streptococcus to overcome calprotectin-mediated stress. Cook  L,, McDaniel  LS (eds.). mBio  2020;11:e02302–20. 10.1128/mBio.02302-20 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 75. Ling  J, Hryckowian  AJ. Re-framing the importance of Group B Streptococcus as a gut-resident pathobiont. Richardson  AR (ed.). Infect Immun  2024;92:e00478–23. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 76. Zackular  JP, Knippel  RJ, Lopez  CA  et al.  ZupT facilitates Clostridioides difficile resistance to host-mediated nutritional immunity. Young  VB (ed.). mSphere  2020;5:e00061–20. 10.1128/mSphere.00061-20 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 77. Lam  LN, Brunson  DN, Molina  JJ  et al.  The AdcACB/AdcAII system is essential for zinc homeostasis and an important contributor of Enterococcus faecalis virulence. Virulence  2022;13:592–608. 10.1080/21505594.2022.2056965 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 78. Huynh  U, Nguyen  HN, Trinh  BK  et al.  A bioinformatic analysis of zinc transporters in intestinal Lactobacillaceae. Metallomics  2023;15:mfad044. 10.1093/mtomcs/mfad044 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 79. Kapetanovic  R, Bokil  NJ, Achard  MES  et al.  Salmonella employs multiple mechanisms to subvert the TLR-inducible zinc-mediated antimicrobial response of human macrophages. FASEB J  2016;30:1901–12. 10.1096/fj.201500061 [DOI] [PubMed] [Google Scholar]
  • 80. Li  J, Ren  X, Fan  B  et al.  Zinc toxicity and iron-sulfur cluster biogenesis in Escherichia coli. Stams  AJM (ed.). Appl Environ Microb  2019;85:e01967–18. 10.1128/AEM.01967-18 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 81. Kostenko  A, Zuffa  S, Zhi  H  et al.  Dietary iron intake has long-term effects on the fecal metabolome and microbiome. Metallomics  2024;16:mfae033. 10.1093/mtomcs/mfae033 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 82. Zackular  JP, Moore  JL, Jordan  AT  et al.  Dietary zinc alters the microbiota and decreases resistance to Clostridium difficile infection. Nat Med  2016;22:1330–4. 10.1038/nm.4174 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 83. Medeiros  P, Bolick  DT, Roche  JK  et al.  The micronutrient zinc inhibits EAEC strain 042 adherence, biofilm formation, virulence gene expression, and epithelial cytokine responses benefiting the infected host. Virulence  2013;4:624–33. 10.4161/viru.26120 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 84. Bolick  DT, Kolling  GL, Moore  JH  et al.  Zinc deficiency alters host response and pathogen virulence in a mouse model of enteroaggregative Escherichia coli -induced diarrhea. Gut Microbes  2014;5:618–27. 10.4161/19490976.2014.969642 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 85. Xue  Y, Osborn  J, Panchal  A  et al.  The RpoE stress response pathway mediates reduction of the virulence of enteropathogenic Escherichia coli by zinc. Elkins  CA (ed.). Appl Environ Microb  2015;81:3766–74. 10.1128/AEM.00507-15 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 86. Mellies  JL, Thomas  K, Turvey  M  et al.  Zinc—induced envelope stress diminishes type III secretion in enteropathogenic Escherichia coli. BMC Microbiol  2012;12:123. 10.1186/1471-2180-12-123 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 87. Juttukonda  LJ, Berends  ETM, Zackular  JP  et al.  Dietary manganese promotes staphylococcal infection of the heart. Cell Host Microbe  2017;22:531–42.e8. [DOI] [PMC free article] [PubMed] [Google Scholar]

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