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European Stroke Journal logoLink to European Stroke Journal
. 2026 May 6;11(Suppl 1):i254. doi: 10.1093/esj/aakag023.438

ABSTRACT NUMBER: ESOC2026A809 AUTOMATIC CEREBRAL MICROBLEED DETECTION AND LOCALIZATION ON SWI USING 3D ATTENTION U-NET WITH MARS REGION-BASED EVALUATION

Pattarawut Charatpangoon 1, Kazbek Barakhanov 2, Arun Kathuveetil 3, Jianhai Zhang 4, Cody Doolan 5, Muhammad Mahajna 6, Feryal Saad 7, M Ethan MacDonald 8, Aravind Ganesh 9
PMCID: PMC13146921

Abstract

Background and aims

Cerebral microbleeds (CMBs) on susceptibility-weighted imaging (SWI) are important markers of cerebral small-vessel disease associated with future intracerebral hemorrhage and cognitive decline and inform decisions regarding antithrombotic and anti-amyloid therapies. However, CMB assessment remains challenging in routine practice due to variability in reader expertise. To address this gap, we developed an automated CMB detection pipeline for SWI.

Methods

Pooled SWI sequences from an Albertan population-based stroke-TIA cohort (ACTIVATION, n=952) and the Alteplase compared to Tenecteplase (AcT) stroke trial (n=134) with expert CMB annotations were split 70/15/15 into training, validation, and test sets. Preprocessing generated three image channels (SWI, vessel-removed SWI, and fast radial symmetry transform [FRST] maps), which were input to a 3D attention U-Net with four encoder-decoder. Test-set performance was evaluated at the case-level (CMB present), cluster-level (lesion detection), and by Magnetic Resonance Anatomical Region Segmentation (MARS) territories.

Results

In the test set (n=163), 41% were CMB-positive, with a median of 3 CMBs per positive case (IQR1-7). Case-level sensitivity/specificity were 80.6%/81.3%. Cluster-level sensitivity/precision were 80.1%/75.1%, with 0.56 false-positive clusters per case. Territory-level performance (MAE-bias and sensitivity-specificity) is summarized in Figure1, showing a location-based trade-off between sensitivity and specificity/MAE, with both sensitivity/MAE highest for lobar. An example case is shown in Figure2.

Conclusions

The results demonstrated stable automated CMB screening on SWI, achieving >80% sensitivity at both case and cluster levels. MARS region-based evaluation identified higher sensitivity and MAE in lobar. With further refinement and validation, this approach may support large-scale cohort studies and clinical workflows.

Conflict of interest

All authors: nothing to disclose

Figure 1 - belongs to Results

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Articles from European Stroke Journal are provided here courtesy of Oxford University Press

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