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. Author manuscript; available in PMC: 2026 Jun 30.
Published in final edited form as: Neuromodulation. 2025 Dec 13;29(3):483–491. doi: 10.1016/j.neurom.2025.11.006

Toward Individualized Deep Brain Stimulation: A Stereoelectroencephalography-Based Workflow for Neurostimulation Target Identification

Jeremy Saal 1,2,a, Kelly Kadlec 1,3,4,a, Anusha B Allawala 1,2, Lucille Johnston 1,2, Ryan B Leriche 1,2, Ritwik Vatsyayan 1,2, Yiyuan Han 1,2, Audrey Kist 1,4, Tommaso Di Ianni 1,4,5, Heather E Dawes 1,2, Edward F Chang 1,2, A Moses Lee 1,4, Andrew D Krystal 1,4, Khaled Moussawi 1,3,4, Prasad Shirvalkar 1,2,3,6, Kristin K Sellers 1,2
PMCID: PMC13313587  NIHMSID: NIHMS2187141  PMID: 41389045

Abstract

Objectives:

Deep brain stimulation (DBS) is increasingly being used to treat a variety of neuropsychiatric conditions, many of which exhibit idiosyncratic symptom presentations and neural correlates across individuals. Thus, we have used inpatient stereoelectroencephalography (sEEG) to identify personalized therapeutic stimulation sites for long-term implantation of DBS. Informed by our experience, we have developed a statistics-driven framework for stimulation testing to identify therapeutic targets.

Materials and Methods:

Fourteen participants (major depressive disorder = 6, chronic pain = 6, obsessive-compulsive disorder = 2) underwent inpatient testing using sEEG and symptom monitoring to identify personalized stimulation targets for subsequent DBS implantation. We present a structured approach to this sEEG testing, integrating a Stimulation Testing Decision Tree with power analysis and effect size considerations to inform adequately powered results to detect therapeutic stimulation sites with statistical rigor.

Results:

Effect sizes (Hedges’ g) of stimulation-induced symptom score changes ranged from −1.5 to +2.39. The SD of sham trial responses was a strong predictor of stimulation response variability, as confirmed by a leave-one-out cross-validated linear regression (R2 = 0.67, permutation p < 0.001). Thus, early sham trial data could be used to estimate the variability of stimulation responses for power analysis calculations. We show that approximately ten sham trials were needed to robustly estimate sham variability. Power analysis (using a paired t-test) showed that for effect sizes ≥1.1, approximately ten trials should be used per stimulation site for sufficiently powered results.

Conclusions:

The presented workflow is adaptable to multiple indications and is specifically designed to overcome key challenges experienced during stimulation site testing. Through incorporating sham trials, effect size calculations, and tolerability testing, the described approach can be used to identify personalized and clinically efficacious stimulation sites.

Keywords: Clinical workflow, deep brain stimulation, neurostimulation, personalized targets, stereoelectroencephalography

INTRODUCTION

Deep brain stimulation (DBS) is emerging as a promising therapeutic modality for a wide range of indications, particularly neuropsychiatric disorders that involve underlying brain network dysfunctions. Unique perturbations in network function across individuals have led to interest in testing stimulation across brain regions to identify personalized therapeutic sites. To achieve this, our center at the University of California, San Francisco and others use inpatient stereoelectroencephalography (sEEG) to explore stimulation across the disease network, aiming to identify personalized therapeutic targets for long-term implantation with DBS.1-8 Throughout, we use the overarching term “DBS” to refer to both DBS devices and responsive neurostimulation (RNS) using the NeuroPace RNS System (NeuroPace Inc, Mountain View, CA). sEEG inpatient monitoring is the established standard of care for complex cases of refractory epilepsy.9,10 We leverage the existing surgical procedures and specialty inpatient units to care for patients with temporarily implanted sEEG leads. We have conducted sEEG monitoring stays lasting approximately ten days with 14 participants across three clinical indications (major depressive disorder [MDD], chronic pain [CP], and obsessive-compulsive disorder [OCD]). Informed by our experience, we have developed a statistics-driven framework for stimulation testing to identify therapeutic targets.

DBS for complex neuropsychiatric disorders has had variable clinical efficacy across individuals and indications. DBS for MDD has primarily targeted the ventral capsule/ventral striatum (VC/VS)11 and the subcallosal cingulate (SCC).12 Although smaller open-label studies and case reports across anatomical targets have shown initial success,13 results from randomized sham-controlled clinical trials have shown considerable heterogeneity.14 Investigations into DBS for CP date back to the 1950s, revealing potential targets including the anterior cingulate cortex, ventral posterolateral and ventral posteromedial nuclei of the thalamus, and the periventricular gray (PVG).15,16 Clinical outcomes of DBS for CP are promising, with some studies reporting that more than half the patients experience >50% pain reduction within 12 months of implantation.17 In the context of OCD, the Food and Drug Administration (FDA) granted a Humanitarian Device Exemption in 2009 for DBS targeting the anterior limb of the internal capsule. Since then, stimulation also has been targeted to the VC/VS, bed nucleus of the stria terminalis, and subthalamic nucleus.18,19 Nevertheless, one-third of patients show no response,20 underscoring the need for individualized targeting. Our staged sEEG-DBS approach aims to improve clinical efficacy by personalizing DBS targets.

Current DBS devices support one to four leads, limiting anatomical coverage. Although revision surgeries to reposition leads are possible, they are costly and increase surgical risk. Hence, optimal implantation site (location of stimulation electrode contacts) selection is crucial, and using sEEG allows investigating the same number of targets that would require the equivalent of three to five revision DBS surgeries to evaluate. Toward this objective, our testing framework is designed with three goals in mind: 1) standardize stimulation procedures for rigorous results; 2) minimize risk and burden caused by the failure of DBS surgery and/or revision surgery to find therapeutically beneficial stimulation sites; and 3) identify ≥one robust therapeutic target.

To address these goals, we present here a Stimulation Testing Decision Tree designed to facilitate the identification of personalized stimulation sites. Importantly, the Decision Tree incorporates power analysis and effect size considerations based on data from participants who underwent stimulation testing with sEEG in three indications (MDD, CP, OCD), to inform the design of stimulation testing that will be adequately powered to detect therapeutic stimulation sites with statistical rigor. We propose this testing framework to avoid pitfalls and obstacles that we have identified during prior sEEG testing periods, including the following:

  1. Trying to (over)optimize one site of stimulation: Without a principled testing approach, on observing therapeutic benefit with stimulation, it can be tempting to adjust stimulation parameters to try and “optimize’’ stimulation at that site. However, this is often performed at the expense of obtaining sufficient trials with stable parameters to statistically power a determination of benefit, testing other sites, or conducting sufficient sham-trial testing.

  2. Over- or underreliance on quantitative metrics to assess therapeutic benefit: Even with training on self-report measures, participants adopt idiosyncratic behavior in responding to symptom surveys, such as only responding within a narrow range of the scale. Thus, overreliance on strict quantitative cutoffs may not fully capture beneficial stimulation. Conversely, basing surgical implant decisions entirely on clinician observations may have personal bias and interrater reliability concerns.

  3. Weighing stimulation benefits and side effects: Even if stimulation is highly beneficial for symptom relief, if it is accompanied by concerning side effects, other sites should be pursued for benefit. Stimulation-induced side effects may prevent participant blinding during randomized controlled trials. These side effects span a range of experiences, including sweaty hands, buzzing or tingling, bladder spasms, dissociation, vertigo, induced smiling, and others.

MATERIALS AND METHODS

Study Participants and Clinical Environment

As part of respective clinical trials, 14 participants were implanted with sEEG for approximately ten days of inpatient monitoring to identify brain regions in which short-term stimulation led to reduction in primary indication symptoms (MDD: n = 6, CP: n = 6, OCD: n = 2). PMT (PMT Corporation, Chanhassen, MN), AdTech (AdTech Medical, Oak Creek, WI), or DIXI (DIXI Medical, Marchaux Chaudefontaine, France) electrodes were implanted bilaterally in regions implicated in the primary indication. Anatomical localization of electrode contacts was conducted by coregistration of preoperative T1 magnetic resonance imaging and postoperative computed tomography scan and automated parcellation and manual verification of the labeling. Contacts within defined regions of interest were selected for subsequent stimulation testing. Electrode tails were connected to cables that interfaced with a 256-channel Nihon Kohden neurophysiology recording and stimulation system. Charge-balanced, biphasic, bipolar stimulation was delivered between one anode and one cathode. The duration of stimulation used for testing ranged across indications on the basis of expected and observed modulation of symptoms (10 seconds–20 minutes of continuous stimulation).

Participants provided frequent symptom reports through visual analog scale (VAS) ratings on a tablet computer. VAS sliders were horizontal and ranged from 0 (no presence of that symptom) to 100 (highest presence of that symptom). VAS symptoms were indication-specific (MDD: depression; CP: pain intensity; OCD: obsessions, compulsions, and OCD-related distress [scores were summed to create an OCD composite score]). Scores were collected before stimulation trials (baseline), during stimulation or sham trials, and during washout. These data were collected and managed using Research Electronic Data Capture (REDCap) hosted at the University of California, San Francisco.21,22 REDCap is a secure, web-based software platform designed to support data capture for research studies providing 1) an intuitive interface for validated data capture; 2) audit trails for tracking data manipulation and export procedures; 3) automated export procedures for seamless data downloads to common statistical packages; and 4) procedures for data integration and interoperability with external sources. Change in VAS score (score during stimulation/sham minus score during the immediately preceding baseline or wash-out period, termed “change score”) was used to quantitatively assess for symptom changes induced by stimulation. We focus our analysis on VAS survey responses because of their utility for momentary symptom tracking. All study activities were approved by the Committee on Human Research at the University of California, San Francisco and covered under FDA Investigational Device Exemptions for each indication (MDD: NCT04004169, CP: NCT04144972, OCD: NCT06347978).

Statistical Analysis

For the retrospective analysis of effect size on data that lacked a paired trial structure, we used Hedges’ g for independent groups.

g=x1¯−x2¯Sp×JJ≈1−34(n1+n2)−9

where

  • x1¯ and x2¯ are the means of the two groups

  • n1 and n2 are the sample sizes of the two groups

  • Sp is the pooled SD of the two groups

A key advantage of the proposed workflow is the paired, block-based design (Supplementary Data Table S1), which will enable paired analyses in future data sets, such as paired t-tests and Cohen’s dz for effect size.

Cohen’s dz is calculated using the formula

dz=M2−M1SD

where SD is the SD of the differences, calculated as

SD=SDsham2+SDstim2−2⋅r⋅SDshamSDstim

where SDsham and SDstim are the SDs of the sham and stimulation data, respectively, and r is the correlation between sham and stimulation data.

One component of the proposed workflow is determining the required number of trials per site through a prospective power analysis. Prospectively calculating this effect size for a power analysis requires estimates for two unknown parameters: the correlation (r) between paired sham and verum stimulation trial change scores and their response variabilities (SDs). We recommend assuming a conservative value for the correlation (eg, 0.2) to avoid overestimating the effect size. Estimating the SDs is more difficult because the identity of the best stimulation site is not known. We hypothesized that the SD from sham trial difference scores could serve as a reliable predictor for SD of change scores at the best stimulation site.

To quantify whether change score (the symptom score during a trial minus the score from the immediately preceding baseline) variability in sham trials is correlated with that of verum stimulation at sites with large effect sizes, we calculated the Pearson correlation. Furthermore, to test whether variability from sham trials could be used to estimate SDs for responses to the best verum stimulation sites, we used a leave-one-out (LOO) cross-validated linear regression. For each of the 14 participants, a linear regression model was trained on the remaining 13 participants and used to predict the held-out participant’s best-site stimulation change score SD from their sham change score SD. The statistical significance of the resulting R2 value was assessed using a permutation test in which stimulation response change score SDs were randomly shuffled 5000 times before the LOO regression was recalculated; the true R2 value was then compared with the resulting null distribution.

Number of Trials Calculation

To estimate the required sample size at different clinically relevant effect sizes (0.8–1.7) to achieve sufficiently powered results (power = 0.8), we used the open-source computing tool G*Power.23 Owing to the invasive nature of the study, we are focusing on large effect sizes. Furthermore, this range was chosen to reflect effect sizes observed. Given the paired design proposed for future studies, we conducted this power analysis using a paired one-tailed t-test with a power of 0.8 and α = 0.05 (one-tailed because the desired effect is in one direction only). Bonferroni multiple comparisons correction was applied to this calculation to determine the required sample size when multiple regions were tested (eg, α = 0.05 for one region; α = 0.005 for ten regions). A similar procedure was followed using unpaired t-tests and paired Wilcoxon signed rank to assess sample sizes for unpaired and nonparametric distributions, respectively.

Stability of Sham SD Across Trials

To inform the number of preliminary trials needed to estimate change score response variability, we sought to determine the minimum number of sham trials required for a stable estimation of the full sample change score SD. To this end, we performed a bootstrap analysis on the sham change score SDs after removing outliers (1.5 times interquartile range), starting with two trials and increasing up to the total number of sham trials (10,000 bootstraps, trials sampled with replacement). We then computed the 95% CI of the distribution of 10,000 SD values. Next, we evaluated the half-width of this CI as a representation of the precision of our SD values for estimates using each number of trials. Lastly, to test whether sham change score SD remained stable across the sEEG testing period, we compared the change score SDs of the first and second halves of temporally ordered trials using a paired t-test.

RESULTS

Stimulation Testing Decision Tree for Identifying a Therapeutic Stimulation Site

Using data collected from sEEG monitoring phases with 14 participants, we formalized a Stimulation Testing Decision Tree (Fig. 1). The Decision Tree can be followed for testing an individual participant and is designed to optimize decision-making on the basis of positive evidence while considering key points of identified risk. The key parameter we aim to “map” during inpatient testing is the therapeutic stimulation site. Stimulation intensity is adjusted as needed during testing. To focus on maintaining statistical power for determining an efficacious stimulation location, we recommend initially holding frequency and pulse-width constant. Any adjustments to these parameters at the same anatomical target can then be treated as a distinct “site” for statistical analysis. The different color-coded sections of the decision tree reflect key considerations to reduce biases in decision-making about implantation sites for long-term DBS for therapeutic benefit.

Figure 1. The Stimulation Testing Decision Tree provides a systematic and statistical approach for identifying therapeutic stimulation sites.

Figure 1.

1. The parameter space is too large to exhaustively explore during inpatient testing. Contact pairs for bipolar stimulation (anode and cathode) should be selected within each region of interest (ROI) based on coregistration of magnetic resonance and computed tomography images. If multiple electrode contacts are within an ROI, different contact pairs can be tested for safety and tolerability. To manage the large number of possible stimulation parameters, we recommend initially holding frequency and pulse width constant. This pragmatic trade-off increases statistical power for determining a stimulation location, although a new parameter set at the same anatomical target can simply be treated as a new site for comparison.

2. Initial safety testing recommendation: 1 second and then 3 seconds at 1, 3, and 6 mA using selected fixed stimulation parameters, per electrode contact pair (these parameters may need to be adjusted if using electrodes with small contact sizes or nonstandard pitch).

3. Sufficient amplitude range may differ between cortical and subcortical targets. For both safety and side effects, we recommend rejecting sites if stimulation <1 mA for cortical and 0.8 mA for subcortical sites is necessary. These amplitude ranges may need to be adjusted if using electrodes with small contact sizes or nonstandard pitch.

4. The presence of side effects with stimulation may compromise participant blinding and subsequent double-blind randomized controlled trials.

5. Symptom provocation may include discussion of triggering life events (MDD), exposure to cues (OCD), or physical movement (CP). The specific activity should be tailored to a given participant’s symptom profile and presentation.

6. Symptoms elicited by provocation may dissipate; the time course of evoked symptoms should be measured and then monitored to inform when additional provocation instances are required.

7. A subset of stimulation sites and parameters should be selected from those that survived safety and tolerability testing for preliminary efficacy testing. Estimated effect size is based on both the sham trial SD and a change score value that indicates a clinical level of improvement.

8. The number of sites that can be tested should be determined using Figure 2, which provides sample size based on estimated effect size and number of sites.

9. If the number of trials required for the sites that remain after safety and tolerability testing is not feasible for testing, the number of sites to be tested must be reduced. The main text presents examples of methods to reduce the number of test sites.

10. Testing should be conducted using blocks within the same session comprising ≥one sham trial and up to one trial at each stimulation site. The sham trial is considered to be paired with each of the stimulation sites tested in that block. If multiple trials of sham are tested within one block, the scores should be averaged (Supplementary Data Table S1).

11. Multiple comparisons should be corrected with, for example, Bonferroni’s method. [Color figure can be viewed at www.neuromodulationjournal.org]

  1. Evidence for therapeutic efficacy (Fig. 1, blue):
    1. Safety testing: All stimulation sites should first undergo safety testing. We recommend 1 second and then 3 seconds at 1, 3, and 6 mA (if using electrodes with 2-mm contacts and 0.8-mm diameter). If afterdischarges are observed, the “Sufficient Safe Dynamic Range” section, later, supplies more details.
    2. Tolerability testing: Ideally, stimulation does not elicit side effects. If any somatic, sensory, or behavioral side effects are reported or observed with stimulation testing, the “Tolerability and Side Effects of Stimulation” section, later, supplies more details.
    3. Spontaneous vs provoked symptoms: If symptoms are not spontaneously present, symptom provocation may be required before stimulation testing can continue. Symptom provocation should be thoroughly discussed with participants before initiation, including allowable or nonallowable topics of discussion or tasks. Although it remains poorly understood whether there is a shared neurobiological substrate for elicited vs spontaneous symptoms, our experience is that stimulation shown to be beneficial in the short term in the inpatient context of symptom provocation for MDD and OCD also is beneficial during long-term DBS in the outpatient setting.8
    4. Symptom baseline: To effectively test for improvement, stimulation trials should only proceed when a participant’s spontaneous symptoms are present above a predetermined, clinically meaningful threshold. If symptoms are below this threshold, testing should be paused until they naturally increase or until provocation is used as described in the previous step.
    5. Variability and effect size estimation: To facilitate designing stimulation testing blocks with statistical power, the expected effect size should first be estimated. Preliminary stimulation blocks can be used to determine the expected variability of symptom responses to stimulation (Supplementary Data Table S1 for suggested trial design). On the basis of our data, variability from sham trials is a strong predictor of the variability of the best stimulation site (R2 = 0.67, permutation p < 0.001). Therefore, an initial set of stimulation blocks should include a higher density of sham trials than does subsequent efficacy testing. This provides the robust data needed to estimate the effect size before finalizing the number of sites for powered testing.
    6. Determine the number of sites and number of trials per site for testing: The estimated effect size from the prior step can then be used to determine the number of trials required per stimulation site being tested.
    7. Select stimulation sites: If there are too many sites remaining after safety and tolerability testing to feasibly acquire the necessary number of trials per site, the number of sites to be tested should be reduced. This can be done using methods appropriate for the particular indication or participant, for example, evaluating tractography, using evoked potentials to evaluate connectivity, performing further stimulation testing to identify sites with strong/rapid behavioral responses, or using prior literature.
    8. Sham-controlled testing: Stimulation parameters should follow what was determined to be safe and tolerable during safety testing.
    9. Calculate symptom change scores: A symptom score will be obtained immediately before and after each stimulation or sham trial to assess changes in symptoms.
    10. Statistical tests: Either a paired t-test or a paired signed rank test can be used to determine the therapeutic effect of a stimulation site compared with sham.
    11. Results interpretation: If the statistical tests indicate significance for a site compared with sham, and this is consistent with clinical observation and participant verbal report, the site can be considered a potential therapeutic target for long-term implantation. If multiple sites are identified as being therapeutic, the most effective site can be determined by ranking therapeutic target change scores. If the statistical test is not significant, other metrics (eg, participant verbal reports, clinician scales) should be investigated for evidence of therapeutic benefit (on the basis of our experience, discrepancies between statistical tests and clinician observations occur in ~15% of cases). Responses should be assessed per individual to determine meaningful clinical benefit. If no clinical benefit is captured by these metrics, no therapeutic site has been identified.
  2. Sufficient safe dynamic range (Fig. 1, green): The presence of afterdischarges with stimulation should warrant extra vigilance at that site. However, safe stimulation may be possible at lower amplitudes (eg, afterdischarges observed at 6 mA do not preclude safe stimulation at 2 mA). The threshold for afterdischarges is dynamic, so further stimulation with lower amplitude at a site that exhibited afterdischarges should be undertaken with caution.

  3. Tolerability and side effects of stimulation (Fig. 1, orange): Stimulation-induced side effects can generally be categorized as unpleasant or neutral/pleasant. For example, sensory thalamus stimulation in patients with CP has been shown to induce pleasant paresthesias,24 and PVG stimulation has coincided with a warm sensation.25,26 Unpleasant side effects must be avoided, and the site only remains viable if the side effect is not present with reduced stimulation amplitude. Unwanted behavioral side effects also should be avoided, for example, stimulation-evoked anger or mania. The threshold for side effects is dynamic, so sufficient amplitude range without side effects must be present during short-term testing. If participant blinding is necessary, as is the case for many clinical trials, sites should only be advanced if amplitude can be decreased to the point of no perceptible side effects, even if side effects are neutral or positive. If blinding is not needed, clinicians/researchers should carefully evaluate together with participants whether the presence of neutral or positive side effects would be distracting or maladaptive in daily life. Another consideration in evaluating tolerability is that some side effects, particularly those that are transient and correspond to stimulation onset/offset, may be present during testing but can be avoided in the outpatient setting.

Empirical Determination of Sample Size

Across all participants and all stimulation sites, Hedges’ g values ranged from −1.5 to +2.39 (Fig. 2a). We were interested in the greatest positive effect size stimulation site within each participant, which indicates an alleviation of symptoms due to stimulation (range of 0.1–2.39 across the 14 participants). Each participant’s sham change score SD vs their best-site change score SD revealed a strong positive relationship (r = 0.86, p < 0.001), as illustrated in Figure 2b. Participants with higher variability in sham trials (eg, those with sham SD >20) tended to have equally large best-site variability (eg, 30+), suggesting trait-level characteristics in the variability of score reporting. To more robustly test the predictive power of this relationship, we performed an LOO cross-validated regression. This analysis confirmed that sham change score SD was a strong out-of-sample predictor of best-site stimulation change score SD (R2 = 0.67, p < 0.001). Thus, we can assume a similar SD of change scores for both the sham and verum stimulation trials. Leveraging this fact, change scores from sham from preliminary stimulation testing blocks can be used to estimate the SD of the best stimulation site (detailed in block trial design, later). This estimate can then be used to estimate the expected Cohen’s dz (Fig. 2c).

Figure 2.

Figure 2.

Effect size across participants and sample size estimation for statistical power. a. Hedges’ g (verum stimulation vs sham) for all stimulation sites tested in P1 to P14. Red points indicate each participant’s largest positive effect size, and blue points indicate effect sizes for all other stimulation sites tested. The dashed line at g = 0 represents no difference from sham. Hedges’ g > 0 indicates alleviated symptoms relative to sham, whereas g < 0 indicates symptom worsening. b. Strong positive correlation between each participant’s sham change score SD and the change score SD at their best stimulation site (r = 0.86, p < 0.001). LOO linear regression further supported that sham change score SD is a strong predictor of best-site verum stimulation change score SD (R2 = 0.67, permutation p < 0.001). c.Cohen’s dz formula and corresponding variables. The table provides three example calculations. d. Number of trials required for statistical significance as a function of the number of brain regions, based on a paired t-test. Each line corresponds to a different effect size. Larger effect sizes require fewer trials to reach significance, whereas smaller effect sizes require more trials. P, participant. [Color figure can be viewed at www.neuromodulationjournal.org]

Using the statistical power analysis tool G*power,22 we computed the number of trials required for different effect sizes and numbers of stimulation sites. For Cohen’s dz ≥1.1, approximately ten samples per site are needed for statistically powered results (Fig. 2d). The same analysis performed for the case of an unpaired t-test shows a substantial increase in the number of samples required per site, emphasizing the importance of a paired design with matched trials for sham and stimulation site (Supplementary Data Fig. S1a). This increase in required samples per site does not occur when using a paired nonparametric test for nonnormally distributed data (Supplementary Data Fig. S1b).

We propose a blocked trial design in which each block has ≥one sham trial plus any number of different verum stimulation sites within a given testing session (Supplementary Data Table S1). Before sham-controlled efficacy testing, preliminary testing blocks with a higher concentration of sham trials can provide an estimate for sham change score SD and thus effect size. To determine the number of preliminary sham trials needed to robustly estimate the change score SD, we performed a bootstrap analysis on data from three participants with a sufficient number of sham trials. Of these, two participants each had a single statistical outlier trial, which was removed from this analysis. For participants with low and moderate variability, the change score SD estimate improved rapidly and then began to level off after approximately ten trials (Supplementary Data Fig. S1c), whereas the participant with high variability scores did not reach a plateau.

Of important note is that even small changes in SD can substantially influence effect size calculations. Bootstrap analysis can be used to generate an upper and lower bound for SD estimates to inform a more conservative estimate for effect size calculation. As a final confirmation of the stability of sham change score SD across days, a paired-samples t-test revealed no significant difference in sham response variability between the first and second half of trials (t(13) = 0.756, p = 0.463), supporting the stability of sham trial variability for estimating stimulation response SD (Supplementary Data Fig. S1d). This said, the results of our bootstrap analysis illustrate a known characteristic of SD, which is that acquiring more samples will allow more precise estimation. Thus, it is important that as sham-controlled testing progresses, the SD is continuously evaluated to ensure adjustments to expected effect size are performed if necessary.

DISCUSSION

We propose an empirically derived and generalizable sEEG-based workflow to identify therapeutic sites for long-term implantation of DBS electrodes to treat a variety of neuropsychiatric conditions. Using lessons learned from 14 participants who underwent an sEEG trial period, this workflow involves clear decision-making rationale for both inpatient testing and post hoc analyses. Our sEEG-based decision tree and workflow offer a prospective method to systematically reduce bias while enhancing both personalization and standardization in long-term DBS implantation site selection. By leveraging trait-level variability in symptom score reporting, we can estimate effect sizes from sham trials during preliminary stimulation testing and determine the number of trials needed per stimulation site to provide statistically powered results.

One foundational assumption of our sEEG-based workflow is that short-term, stimulation-induced symptom relief will predict long-term clinical outcomes from long-term DBS. Prior work has revealed that short-term stimulation during an sEEG period does lead to sustained benefit in treatment-resistant depression, CP, and OCD.3,6-8 However, it is important to note that our methods are used to seek targets in which short-term stimulation is a sufficient condition for therapeutic benefit. The proposed workflow may miss effective sites that require longer periods of long-term stimulation.27 Therefore, our workflow should be considered a tool for identifying rapid-response brain stimulation targets, rather than an exhaustive survey of all potential therapeutic sites.

Despite its advantages, this workflow has several limitations. For instance, microlesion effects caused by the implant and/or explant surgeries can alter symptom intensity and may contribute to changes observed during inpatient mapping. It is important to monitor symptoms after the sEEG leads are removed; persistent relief of symptoms may indicate a microlesion effect, which should be considered when considering permanent DBS implantation. Although sham trials and wash-out periods help mitigate carry-over concerns, available time may remain insufficient for complete symptom reversion. Untested parameters at a “ruled-out” site could theoretically outperform the chosen implantation site. The proposed framework does not guarantee the identification of a therapeutic target. Rather, it provides testing guidelines that, on the basis of real participant data, are likely to provide sufficient statistical power to identify a therapeutic target if it exists within the regions tested. In future studies, data-driven methods based on Bayesian optimization or machine-learning models could be integrated with our framework to effectively optimize over a larger parameter space.28-30 Moreover, this framework does not specifically facilitate the assessment of state-dependent effects of stimulation, given testing is aggregated across multiple days and states.

Although these guidelines are designed to be generalized because they are based on multiple indications, it is important to note that this is limited by the small number of participants and will have to be evaluated in larger studies. Long-term outcomes from the workflow also remain not known but will be critical to evaluate when blinded testing with long-term implanted devices is concluded. Another limitation of this workflow is the current reliance on VAS as the primary measure of therapeutic effect. Although VASs have been shown to correspond with validated clinical measures,31,32 there remains a need for improved measurements of acute fluctuations in symptoms.

Use of this workflow will provide statistically rigorous results that can improve future sEEG targeting and testing. To this end, we are working to understand the mechanisms engaged by therapeutic vs nontherapeutic stimulation by combining models of the volume of activated tissue with tractography to estimate the white matter tracts implicated in stimulation. This will be a critical part of further personalizing target selection. It is worth noting that although this workflow provides needed guidelines for standardizing testing in participants who undergo sEEG ahead of long-term DBS implant, this type of testing may not be scalable if DBS becomes a more widely adopted treatment for psychiatric conditions. For this reason, it also will be critical to extend the neurophysiologic insight gained from this method to nonsurgical methods in the future.

CONCLUSION

To summarize, we have proposed a data-driven workflow that leverages sEEG-based stimulation to address key challenges in personalizing DBS. The proposed approach allows the identification of therapeutic sites by integrating rigorous trial design, effect size analysis, and sham comparisons. Although this approach should be further validated, our framework provides a pragmatic method for optimizing DBS targets and parameters across diverse neuropsychiatric conditions, thus laying the groundwork for more precise and effective neuromodulation therapies.

Supplementary Material

1

To access the supplementary material accompanying this article, visit the online version of Neuromodulation: Technology at the Neural Interface at www.neuromodulationjournal.org and at https://doi.org/10.1016/j.neurom.2025.11.006.

COMMENTS.

Saal et al share and detail rigorous methods to evaluate the therapeutic value of novel neurostimulation targets in patients who undergo sEEG-based mapping of diseased brain networks. The sEEG-based workflow has been invaluable to the field of neuromodulation to both elucidate the pathophysiology of disease and evaluate the short-term therapeutic efficacy of various targets, thereby identifying patient-specific targets for long-term neuromodulation. Although sEEG-guided neuromodulation is no doubt an invaluable tool to advance our field, the challenge of designing, testing, and interpreting short-term effects of stimulation is immense, especially in a rigorous way that minimizes bias. Given the inherent challenges, the detailed methods and statistical approach reported by the authors provide a framework that can generally be replicated and built on. The utility of the methods across treatment-resistant depression, OCD, and CP in addition to across tasks is valuable and encouraging but does not ensure generalizability across all diseases, brain networks, and stimulation sites, or stimulation paradigms. Moreover, the relationship between short- and long-term therapeutic stimulation remains unclear, and may vary across diseases and brain networks, again potentially limiting generalizability. Still, the methods are an extremely valuable framework that has clearly emerged from the unique experience of this large multidisciplinary research group and should be carefully considered and integrated into future trial designs that consider sEEG-guided approaches for developing novel central neuromodulation strategies.

Nader Pouratian, MD, PhD Dallas, TX USA

***

This manuscript presents an innovative, statistics-driven framework using sEEG electrodes to personalize DBS target selection for neuropsychiatric disorders. The authors incorporate a structured workflow with sham trials, effect size estimation, and power analysis to guide data-driven implantation decisions. Despite a small heterogeneous sample, these methods set a new site of view for target selection in DBS surgery.

Atilla Yilmaz, MD Istanbul, Turkey

Source(s) of financial support:

This work was supported by the Ray and Dagmar Dolby Family Fund through the Department of Psychiatry at UCSF, Foundation for OCD Research, the National Institute of Mental Health under Award Number R21MH130914, the National Institute of Neurological Disorders and Stroke of the National Institutes of Health under Award Number UH3NS123310, the National Institute of Health HEAL Initiative Grant UH3NS115631, and the UCSF Weill Institute for Neurosciences. The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institutes of Health.

Footnotes

For more information on author guidelines, an explanation of our peer review process, and conflict of interest informed consent policies, please see the journal’s Guide for Authors.

Conflict of Interest

Prasad Shirvalkar receives consulting income from Presidio Medical and Ketamine Research Foundation; and holds two pending patents related to DBS and SCS for chronic pain. Given his role on the Neuromodulation editorial board, Prasad Shirvalkar was not involved in the peer review of this article and has no access to information regarding its peer review. Full responsibility for the editorial process for this article was delegated to another journal editor. The remaining authors reported no conflict of interest.

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